Cp4.1LG17g03930 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG17g03930
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Cell number regulator 6
Location	Cp4.1LG17 : 2958879 .. 2964087 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGTATATTTGCATAATTTAAGATTTTTATTTCTAACGAAGCAATGCAATAAATTATCTAAAGTTCAATTTTTTTTTTTTTTTTTAATAAACTATATTATTTTGATATCATTAGTTTCTTTGGAACCGGTTTGATTGGGTTTAATTTAAAAAAAACCACGGTTCAGTTAGGTTTGTGTTGGCAGTCGGTTCAATTGAATCGGTCACGTCATCTTCTTCTTCCCCAAAATAGGGGAAGAAGTTCACGGACGTGTGTTCCTTGCCCTAATACTCGGTTTCTCCAACTCTCTACCATGACTTTCTCCCCTCCATTTCTTCATGGAACATCGAGATTGTGTTGCAAGGAAGACGTAAGGGTTGGATTCATATCTTTTCGTGAATCAAAATTTTCACGTTTTAAAACAAAAACATAAATACATTCTAAATTCAAATTAAAGTTTGAATACATTTGACACGATAAACAAAACAATTAAAATATTGAAACAGTTGAAAACGGTATAGCTTTGTATGGCACCTGCTCCTAATCTGCGTCTATCATTAACCAACTCCTTCTTGTCACCTAAAAAATATGAGAGAATCTGAGTGACTACAAAGAGTCACTGAGTAACCTACTTGTAGGCTCTTAATCGTGTTCTTAAGTGTGCTAAGGTACCACACTCTTTCTTATCATGTTCTTCTTTTTTACATGAAAGCTTAAGCTCTTAACTTCTGTTCTTGAATTATGAGTTCTTGTCCTGATCTTTCCCCAAAGACCTTGGTCTTAGGTTCTAATTTCTTAATCTTGGCGGCCTAAGGGCTTAGTTCCAAGGTTCTAGGTTCTGAGTTTTGAGAACTTGGATCTTGATCCATGTCCTAATCCTTATTCTTGGTTCTTAGTTATTGCTCTTGGTTCTTGCCCTTAGTTCTTGTTTCTCGTTTTGTTCCCTAAGACACTCCTCCTAAGATTTATGATATTGGACATGAACCTGACAACCTATGCCAAAGGCTTCATGTGTGTTCACGCGACATAGTCTTAACTTACGTCCAAGACTTCATGTGTTCCAAGTATGTAATTTGAACTTGTATCAAGGACTTCGTGTGTTCTCTACTATACAGTTTGAAACCTACAACCAAGACATCTTACATTCTAAGCCGTATGCCCAAAGCTTCATACATTCCAAGTGCCATAGTCTGAATACCTACGTCCAATGCTTCATACTTTTGAAGTGGCATAGTCTGGAACCAACATATAAGGTTTCTTACATTGCAAGTGATGCAGTCTGAGTCATGAACATATTGTATCATGGGAGGTTTATGGATTTCTTTGGTTTCTGAGTCTTATAACCTTGGTTATTTGTTCTTAGCATTCTTTATATCTTAGCATTCTTAGGCTAGGGTACTTTAGGGTATGGGTGTGTCCTAAGCTTACTTCGCACATGTTCTTGAGATGGCCTCCTGATTACTTAAAGATTAATGGCTCACCTGGAGTTCATCTTAATTTATGGAAGCATCCTAATTACTTAAAAATCTCAAACTAGCTTAAAGCTTATCATGAGATAACAACCTGATTGCTTAAAAATCAAGTGCTAACTTTGAGCTCCACTTAGGTTAGTGTAGTCTCCTAATTGCTTTAAAACCAAGGACTATCCTAAAGCTTAACATGAGATAGAATCATAATGACTTAGAAATCCAGGGCTATCTTTGAGCCATCTTGAGCTAGGATAGCCTCCAATTGCTTAAAAACCAAGGACAAACCTAAAGTTTATCTGAGGTAACTCCTCATTGCTTAACAATTAGGGATTTACTTAGAATTCATCTTGACACATGGTAGTCTCCTAATTACTTAAAAAATTCAGGTCATTATAGGCAATGCAATGACGATGAATAGTGGAAAGGGATGCAGTCGCTACAACATGGAAGGCAAAGGTCGTGGGCATTGCTATGGTTGTGGCTTCATACCTAGCAATAGAAGAGGTCGTAACAATATCTCATAAACCCATTATGATGTCAACCTGCAAAAAGGACAAGAGCATGATGTTACTCTTGTAAAAATACTAAACTATGTGGCGGAGTGCAGGAACAAGAAGTGCATGAAGAGGCAAACATCACATTCACATATGACCAAGAGCCTGCACTGATGTTGCCCAAGAGCACGTTAACTTTCATTGAAGAGTAGACTATGACAAACCTCTTCAAGAAAAAAATAAAATCAAGTGGAGACTATGACCGGAGTTCAAGCAAAGTTTGGTGACAGATCATTCGTACTGATCCAAGGAAAAAGATCCATCATATTCCAATTCAATAACAACGATCAACATCTACGGATGTAGTTGATCTATTGATTTAGTTAATATTATCAATCTTGGTTAAATGACAGAAGAAGACAGTAGAGCGGAGTTAGTAGGTTCGTTTCTTAAAATGTTCGACAGAAATGCAGTCTTGTTGATGAAAGTCAACCCGTCACAAAACCACCTATACAAGATACTATTGTAGACCTGCCAGCCCGCCTCTCTATTGACGGCATTACAGACCCAACTTGACTATGACATGCAAGACTTGTGCACGGCCCCAAAATCATACCCTCAAACCAATATAATCCTTTTTAAATTTGGTGTATATTTTTACCTTACAAATTACTCAGCATATGTTACATTTGTGTAGTCCTACCCTGTCCCTTGGCTCCCTTCTTCAACCTCTCAAAATTTTTCCCAAAGCTTTTTTTGGAATTCCGAAAGCCTCTCATGGCCAATCATCAAATCCCTTAGCATAGTCAATATCTAAAATTAGGGAACAATGGTTTAATGTTCCAAAATTTCTCTTATTCCAGAGTCTATATTTAGCATGGTGTTCATGCCTTTGATTTAAGATAGCATTAGTTTCCATCCCCATTAAACAATTCTTAGCTCTTAAAACTCACCCTTTTCTCTACAAAATTGTAATAAAAACCCTAAAATCTTCTACACTTCCAACAAAACCCTGGGAGTTTCTTATACTTTACAAAAACCAATGAGTTATAGACCTCCACAAAAGGGGTTCTCTACGCCAATTTTGATGTGTTAATCCACACATTACCCTCATAGGATGAAAATATTAACAAAATAATATTAGGGTTACAAAAATTGGTTGAAGATTTTGATTTGGCACATTGTTTGTTTTGATTTTGGAGAAAGATGGGTGACGGTAATATGCAATCAAGGTATGTGAGATTGACAAAAGATCAGGCGCCATTGGAGGATATCACCCCTGGAGAGCTGAATCAACCTATTCAAGTGCCTCAGGTCACCTTTTCTTTTTTTCTTCTACTATATATCAACAATTGATGTTGTGTGTTGAATATTGATATACAATGACTTGCAACAAACAGTTGATTGTTCATAGATGTGAGGAGTGTGGGCAGCCGCTACCGGAAAGCTATCAGCCACCAGCCGATGAAGATTGGACCACTGGCATTTGTGGTTGTCTTCAAGATACCCAGAGTTGTAAGACTGTTGCTAATAGAGTTTATGTTCAAAGTTGATAATATCATACTACGAGTCTAGTGATTGATTTTGATGTGGTGCAGGCTGGAGAGGAATGTTGTGCCCATGTGTGTTGTTTGGGGAAAATGTAGAGACACTGAAAGAGGAGATACCGTGGCAAAATGCATGTGTTTGCCATGCAATGTGTGTGGAAGGAGGAATGGCAGTGGCGGCGGCAACGGCACTTATACATGGCATTGATCCCCAAACTTCTTTTTTGATATCTGAAAGCCTCTTGTTTGCTTGGTGGATGTGTGGTATCTATACTGGTTTGTTTCGCCAGTCCTTGCAGAAGAAATATCATCTTAAGGTCACACACACAACCTTTTATTTCTCTCATTATTCTTTCTCGGATCTATTATAATAAAACAATTTTGTGTCTAACAATTTTGTGTCTAATAACGATGACCCACATCGATTAGGGAGAAAAACGAAAACATTCTTTATGAGTGTGTGGAAACTTCTCCACGCGTCTTATAAACCTTGACGAGAAGCCTGAAAAGAAAACTCAAAGAGCCAATATTGGCAACTGTGGACTTGGGCTGGCGATTTGCTCATATGGATTGGGGTCCCGCATCAATTGGAGAAGGAAATGAGTGTCAACGAGGATACTGGGCCTTAAAGATGGGTGGATTGTGAGATTCCACATCAGTTCTCGCTCTTCCCTGAAAGAGAACATTTTTGTTACCCATAAAATGGGAATGAGCTAGGGTTAGGTTATGAACTTATAATCTATAATATTACGATCGAGTTGATTCCGTGATTATAAGTTCATTCCATATTAGGGTTGACTCATGATTATAAGTTCATTTCATACTAGGTCAGACCAGAATAGGGCTGGTTACATTTCTACAAATGAATTATAATCTGATAATCGGGTCGATTTCATGATTATAAGTTCATTCCATATCGGGCCAGATCGGAATAGGAATAGGTTACACTTTTACAAATGAATCGGGGTGGATTGTGAGATCCCACATTGGTTCTCACTAAGAGGACATTTCTAAAAATGAAAGGTGGATTGTGAGATCCCACAACGGTTCTCACTAGGCCTCGAAAGAGGATACTTTTAAATGAATCGGGGCAGATTGTGGAATCCCACATTGGTTCCCGCCAGGCCTCGAAAGAGAACAATTCTACAAATGATTCTAAAAATGAATCGAGATCCCACATCTGATCTCGCTGGTCCGCAAAAGAGGACACTTCTAATGAATCGAGATCCCACATCTGATCTCGCTGGTCCGCAAAAGAGGACACTTCTAAAAATCAACCTACATATTGATTGAAATTATTTATTTGGGTTGGTATTTTGATGTTATTTATCAAAATTATGGTTAGGTTTTTAGTAAGCCCTAATATTTGGTGTACCTTCTTAGAACTCTCCATGCGATCCATGTCTGGTGCATTGCTGCATGCATTGGTGTGCGCTATGTCAAGAGCATAGAGAAATGAGGAACCATCTTTCTGATAACGTTGCCATGCAAATGACAGTCATCAGCCCTCCTGCCCTTCAGGCGATGAACATCCACCAGAATGAATCTGCACCGTCCACTTCATCTCTGCCATCTCAAGAACTAGCCATCACGACGATTTAGAACTCACTAACTCCTTCATGGGCCTTGGAGAGTTAGGAACTTTTATAAGGAATGACAATATTTTAGGAATCTTTGTTTTTAGTTCAGTGTTTTTGAATCTGTAACGTTATTACC

mRNA sequence

ATGTATATGGGTGACGGTAATATGCAATCAAGGTATGTGAGATTGACAAAAGATCAGGCGCCATTGGAGGATATCACCCCTGGAGAGCTGAATCAACCTATTCAAGTGCCTCAGACACTGAAAGAGGAGATACCGTGGCAAAATGCATGTGTTTGCCATGCAATGTGTGTGGAAGGAGGAATGGCAGTGGCGGCGGCAACGGCACTTATACATGGCATTGATCCCCAAACTTCTTTTTTGATATCTGAAAGCCTCTTGTTTGCTTGGTGGATGTGTGGTATCTATACTGGTTTGTTTCGCCAGTCCTTGCAGAAGAAATATCATCTTAAGAACTCTCCATGCGATCCATGTCTGGTGCATTGCTGCATGCATTGGTGTGCGCTATGTCAAGAGCATAGAGAAATGAGGAACCATCTTTCTGATAACGTTGCCATGCAAATGACAGTCATCAGCCCTCCTGCCCTTCAGGCGATGAACATCCACCAGAATGAATCTGCACCGTCCACTTCATCTCTGCCATCTCAAGAACTAGCCATCACGACGATTTAGAACTCACTAACTCCTTCATGGGCCTTGGAGAGTTAGGAACTTTTATAAGGAATGACAATATTTTAGGAATCTTTGTTTTTAGTTCAGTGTTTTTGAATCTGTAACGTTATTACC

Coding sequence (CDS)

ATGTATATGGGTGACGGTAATATGCAATCAAGGTATGTGAGATTGACAAAAGATCAGGCGCCATTGGAGGATATCACCCCTGGAGAGCTGAATCAACCTATTCAAGTGCCTCAGACACTGAAAGAGGAGATACCGTGGCAAAATGCATGTGTTTGCCATGCAATGTGTGTGGAAGGAGGAATGGCAGTGGCGGCGGCAACGGCACTTATACATGGCATTGATCCCCAAACTTCTTTTTTGATATCTGAAAGCCTCTTGTTTGCTTGGTGGATGTGTGGTATCTATACTGGTTTGTTTCGCCAGTCCTTGCAGAAGAAATATCATCTTAAGAACTCTCCATGCGATCCATGTCTGGTGCATTGCTGCATGCATTGGTGTGCGCTATGTCAAGAGCATAGAGAAATGAGGAACCATCTTTCTGATAACGTTGCCATGCAAATGACAGTCATCAGCCCTCCTGCCCTTCAGGCGATGAACATCCACCAGAATGAATCTGCACCGTCCACTTCATCTCTGCCATCTCAAGAACTAGCCATCACGACGATTTAG

Protein sequence

MYMGDGNMQSRYVRLTKDQAPLEDITPGELNQPIQVPQTLKEEIPWQNACVCHAMCVEGGMAVAAATALIHGIDPQTSFLISESLLFAWWMCGIYTGLFRQSLQKKYHLKNSPCDPCLVHCCMHWCALCQEHREMRNHLSDNVAMQMTVISPPALQAMNIHQNESAPSTSSLPSQELAITTI

Homology

[Close]

BLAST of Cp4.1LG17g03930 vs. Swiss-Prot
Match: CNR6_MAIZE (Cell number regulator 6 OS=Zea mays GN=CNR6 PE=2 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 3.2e-47
Identity = 75/123 (60.98%), Postives = 100/123 (81.30%), Query Frame = 1


Query: 38  QTLKEEIPWQNACVCHAMCVEGGMAVAAATALIHGIDPQTSFLISESLLFAWWMCGIYTG 97
           + ++E+IPW   CVCHA+ VEGG+ +A  TA+ HG+DP+TSFLI E L+F+WW+C  YTG
Sbjct: 95  EAVREDIPWTTPCVCHAVFVEGGITLAILTAIFHGVDPRTSFLIGEGLVFSWWLCATYTG 154

Query: 98  LFRQSLQKKYHLKNSPCDPCLVHCCMHWCALCQEHREMRNHLSDNVAMQMTVISPPALQA 157
           +FRQ LQ+KYHLKNSPCDPC+VHCC+HWCA CQEHRE    L++N A+ MTV++PP +Q 
Sbjct: 155 IFRQGLQRKYHLKNSPCDPCMVHCCLHWCANCQEHRERTGRLAENNAVPMTVVNPPPVQE 214

Query: 158 MNI 161
           M++
Sbjct: 215 MSM 217

[Close]

BLAST of Cp4.1LG17g03930 vs. Swiss-Prot
Match: PCR10_ARATH (Protein PLANT CADMIUM RESISTANCE 10 OS=Arabidopsis thaliana GN=PCR10 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.6e-06
Identity = 24/62 (38.71%), Postives = 39/62 (62.90%), Query Frame = 1


Query: 99  FRQSLQKKYHLKNSPCDPCLVHCCMHWCALCQEHREMRNHLSDN--VAMQMTVISPPALQ 158
           +R+SL+ KY+L+ +PC   + H   H CA+CQE+RE+R   S +  + M+M + + P  Q
Sbjct: 125 YRKSLRAKYNLQEAPCGDFVTHFFCHLCAICQEYREIREQSSGSYPLDMKMAITNAPLAQ 184

[Close]

BLAST of Cp4.1LG17g03930 vs. TrEMBL
Match: A0A0A0KDV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G108550 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 1.4e-70
Identity = 128/146 (87.67%), Postives = 136/146 (93.15%), Query Frame = 1


Query: 38  QTLKEEIPWQNACVCHAMCVEGGMAVAAATALIHGIDPQTSFLISESLLFAWWMCGIYTG 97
           +TL+EEIPWQNACVCHAMCVEGGMAVAAATAL HGIDPQTSFLISE+LLFAWWMCGIYTG
Sbjct: 91  ETLREEIPWQNACVCHAMCVEGGMAVAAATALFHGIDPQTSFLISETLLFAWWMCGIYTG 150

Query: 98  LFRQSLQKKYHLKNSPCDPCLVHCCMHWCALCQEHREMRNHLSDNVAMQMTVISPPALQA 157
           LFRQSLQKKYHLKNSPCDPCLVHCCMHWCALCQE+REMRNHLSDN+ MQMTVI PPALQA
Sbjct: 151 LFRQSLQKKYHLKNSPCDPCLVHCCMHWCALCQENREMRNHLSDNITMQMTVIDPPALQA 210

Query: 158 MNIH-QNESAPSTSSLPSQELAITTI 183
           MN +  NE  PS+S +PSQELAIT I
Sbjct: 211 MNTNDDNEFPPSSSVVPSQELAITPI 236

[Close]

BLAST of Cp4.1LG17g03930 vs. TrEMBL
Match: W1NZK6_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00106p00154260 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 5.0e-63
Identity = 122/224 (54.46%), Postives = 140/224 (62.50%), Query Frame = 1


Query: 3   MGDGNMQSRYVRLTKDQ-APLEDITPGELNQPIQVPQT---------------------- 62
           MGD  +QSRYV+LTK+Q AP++DITPGELNQP+QVPQ                       
Sbjct: 1   MGDDTLQSRYVKLTKEQDAPVDDITPGELNQPLQVPQLVVHRCRECGQPLPDSYEHPADE 60

Query: 63  ---------------------------------LKEEIPWQNACVCHAMCVEGGMAVAAA 122
                                            +KEEIPW   C CHA+ VEGG+A+AAA
Sbjct: 61  PWTTGIFGCAEDTDSCWLGLFCPCVLFGRNVERIKEEIPWTRPCTCHAIFVEGGIALAAA 120

Query: 123 TALIHGIDPQTSFLISESLLFAWWMCGIYTGLFRQSLQKKYHLKNSPCDPCLVHCCMHWC 171
           TA+ HG+DP+TSFLI E L FAWWMCGIYTGLFRQ LQKKYHLKNSPCDPCLVHCCMHWC
Sbjct: 121 TAIFHGVDPRTSFLIGEGLFFAWWMCGIYTGLFRQELQKKYHLKNSPCDPCLVHCCMHWC 180

[Close]

BLAST of Cp4.1LG17g03930 vs. TrEMBL
Match: A0A067K997_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14621 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.6e-61
Identity = 109/134 (81.34%), Postives = 121/134 (90.30%), Query Frame = 1


Query: 38  QTLKEEIPWQNACVCHAMCVEGGMAVAAATALIHGIDPQTSFLISESLLFAWWMCGIYTG 97
           +TL+++IPW NACVCHAMCVEGG+A+AAATA  HGIDP+TSFLI E LLFAWWMCGIYTG
Sbjct: 91  ETLRDDIPWSNACVCHAMCVEGGLALAAATAFFHGIDPKTSFLICEGLLFAWWMCGIYTG 150

Query: 98  LFRQSLQKKYHLKNSPCDPCLVHCCMHWCALCQEHREMRNHLSDNVAMQMTVISPPALQA 157
           LFRQSLQKKYHLKNSPCDPCLVHCCMHWCALCQEHREMRNHLSDN AMQMTV++PP  Q 
Sbjct: 151 LFRQSLQKKYHLKNSPCDPCLVHCCMHWCALCQEHREMRNHLSDNAAMQMTVVNPPPAQQ 210

Query: 158 MNIHQN-ESAPSTS 171
           MN  ++ ESA ST+
Sbjct: 211 MNSGESQESAASTA 224

[Close]

BLAST of Cp4.1LG17g03930 vs. TrEMBL
Match: B9RD43_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1609360 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.4e-60
Identity = 107/135 (79.26%), Postives = 119/135 (88.15%), Query Frame = 1


Query: 38  QTLKEEIPWQNACVCHAMCVEGGMAVAAATALIHGIDPQTSFLISESLLFAWWMCGIYTG 97
           +TL+E+IPW NACVCHAMCVEGG+A+AAATA  HGIDP+TSFLI E L FAWWMCGIYTG
Sbjct: 91  ETLREDIPWANACVCHAMCVEGGLALAAATAFFHGIDPKTSFLICEGLFFAWWMCGIYTG 150

Query: 98  LFRQSLQKKYHLKNSPCDPCLVHCCMHWCALCQEHREMRNHLSDNVAMQMTVISPPALQA 157
           LFRQSLQKKYHLKNSPCDPCLVHCCMHWCALCQEHREM+NHLSDN  MQMTV++PP +Q 
Sbjct: 151 LFRQSLQKKYHLKNSPCDPCLVHCCMHWCALCQEHREMKNHLSDNSHMQMTVVNPPPVQQ 210

Query: 158 MNIHQN-ESAPSTSS 172
           MN  ++ ESAP   S
Sbjct: 211 MNTDESQESAPDAQS 225

[Close]

BLAST of Cp4.1LG17g03930 vs. TrEMBL
Match: W9R3S9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021797 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 4.4e-59
Identity = 105/138 (76.09%), Postives = 121/138 (87.68%), Query Frame = 1


Query: 38  QTLKEEIPWQNACVCHAMCVEGGMAVAAATALIHGIDPQTSFLISESLLFAWWMCGIYTG 97
           +TL+E+IPW NACVCHA+CVEGGMAVAAA ALI+GIDP T+FLI ESL+FAWWMCGIYTG
Sbjct: 91  ETLREDIPWTNACVCHAVCVEGGMAVAAAAALINGIDPHTTFLICESLVFAWWMCGIYTG 150

Query: 98  LFRQSLQKKYHLKNSPCDPCLVHCCMHWCALCQEHREMRNHLSDNVAMQMTVISPPALQA 157
           LFRQSLQKKYHLKNSPCDPCLVHCCMHWCALCQEHREM+NHLSD+ A QMT+++PP +Q 
Sbjct: 151 LFRQSLQKKYHLKNSPCDPCLVHCCMHWCALCQEHREMKNHLSDSAASQMTIVNPPPVQE 210

Query: 158 MNIHQNESAPSTSSLPSQ 176
           M  H +E+     S PS+
Sbjct: 211 M--HSDENKDPERSAPSK 226

[Close]

BLAST of Cp4.1LG17g03930 vs. TAIR10
Match: AT2G45010.1 (AT2G45010.1 PLAC8 family protein)

HSP 1 Score: 205.3 bits (521), Expect = 3.2e-53
Identity = 90/135 (66.67%), Postives = 106/135 (78.52%), Query Frame = 1


Query: 38  QTLKEEIPWQNACVCHAMCVEGGMAVAAATALIHG-IDPQTSFLISESLLFAWWMCGIYT 97
           + ++EEIPW   CVCHA+CVEGGMA+AA TAL  G IDPQT+ +I E L FAWWMCGIY+
Sbjct: 92  EAVREEIPWTQPCVCHAVCVEGGMALAAVTALFSGYIDPQTTVVICEGLFFAWWMCGIYS 151

Query: 98  GLFRQSLQKKYHLKNSPCDPCLVHCCMHWCALCQEHREMRNHLSDNVAMQMTVISPPALQ 157
           GLFRQ LQKKYHLKN+PCD C+VHCC+HWCALCQEHREM+NHLSD  A   T + PP +Q
Sbjct: 152 GLFRQELQKKYHLKNAPCDHCMVHCCLHWCALCQEHREMKNHLSDTEASSSTTMDPPPVQ 211

Query: 158 AMNIHQNESAPSTSS 172
            MN  +   A S+SS
Sbjct: 212 EMNTEERRDASSSSS 226

[Close]

BLAST of Cp4.1LG17g03930 vs. TAIR10
Match: AT5G51400.1 (AT5G51400.1 PLAC8 family protein)

HSP 1 Score: 183.0 bits (463), Expect = 1.7e-46
Identity = 81/140 (57.86%), Postives = 105/140 (75.00%), Query Frame = 1


Query: 35  QVPQTLK-EEIPWQNACVCHAMCVEGGMAVAAATALIHGIDPQTSFLISESLLFAWWMCG 94
           +V +TL  EE  W+ AC+CH++ VEGG+  A+  A + GIDP TS LI E LLF WWMCG
Sbjct: 89  RVYETLSDEETSWKKACICHSIVVEGGLTAASMLACVPGIDPHTSLLIWEGLLFVWWMCG 148

Query: 95  IYTGLFRQSLQKKYHLKNSPCDPCLVHCCMHWCALCQEHREMRNHLSDNVAMQMTVISPP 154
           IYTG  RQ+LQ+KYHL+N+PCDPC+VHCC+H+CA+CQEHREM+N LSDN  M MTVI+PP
Sbjct: 149 IYTGNVRQTLQRKYHLQNAPCDPCMVHCCLHFCAVCQEHREMKNRLSDNFVMPMTVINPP 208

Query: 155 ALQAMNIHQNESAPSTSSLP 174
            +Q M+   +      +S+P
Sbjct: 209 PVQEMSASGDRDQHHHNSVP 228

[Close]

BLAST of Cp4.1LG17g03930 vs. TAIR10
Match: AT2G40935.1 (AT2G40935.1 PLAC8 family protein)

HSP 1 Score: 53.1 bits (126), Expect = 2.0e-07
Identity = 24/62 (38.71%), Postives = 39/62 (62.90%), Query Frame = 1


Query: 99  FRQSLQKKYHLKNSPCDPCLVHCCMHWCALCQEHREMRNHLSDN--VAMQMTVISPPALQ 158
           +R+SL+ KY+L+ +PC   + H   H CA+CQE+RE+R   S +  + M+M + + P  Q
Sbjct: 125 YRKSLRAKYNLQEAPCGDFVTHFFCHLCAICQEYREIREQSSGSYPLDMKMAITNAPLAQ 184

[Close]

BLAST of Cp4.1LG17g03930 vs. NCBI nr
Match: gi|449445702|ref|XP_004140611.1| (PREDICTED: cell number regulator 6 [Cucumis sativus])

HSP 1 Score: 273.9 bits (699), Expect = 2.1e-70
Identity = 128/146 (87.67%), Postives = 136/146 (93.15%), Query Frame = 1


Query: 38  QTLKEEIPWQNACVCHAMCVEGGMAVAAATALIHGIDPQTSFLISESLLFAWWMCGIYTG 97
           +TL+EEIPWQNACVCHAMCVEGGMAVAAATAL HGIDPQTSFLISE+LLFAWWMCGIYTG
Sbjct: 91  ETLREEIPWQNACVCHAMCVEGGMAVAAATALFHGIDPQTSFLISETLLFAWWMCGIYTG 150

Query: 98  LFRQSLQKKYHLKNSPCDPCLVHCCMHWCALCQEHREMRNHLSDNVAMQMTVISPPALQA 157
           LFRQSLQKKYHLKNSPCDPCLVHCCMHWCALCQE+REMRNHLSDN+ MQMTVI PPALQA
Sbjct: 151 LFRQSLQKKYHLKNSPCDPCLVHCCMHWCALCQENREMRNHLSDNITMQMTVIDPPALQA 210

Query: 158 MNIH-QNESAPSTSSLPSQELAITTI 183
           MN +  NE  PS+S +PSQELAIT I
Sbjct: 211 MNTNDDNEFPPSSSVVPSQELAITPI 236

[Close]

BLAST of Cp4.1LG17g03930 vs. NCBI nr
Match: gi|659120414|ref|XP_008460181.1| (PREDICTED: cell number regulator 6 [Cucumis melo])

HSP 1 Score: 271.2 bits (692), Expect = 1.3e-69
Identity = 126/146 (86.30%), Postives = 136/146 (93.15%), Query Frame = 1


Query: 38  QTLKEEIPWQNACVCHAMCVEGGMAVAAATALIHGIDPQTSFLISESLLFAWWMCGIYTG 97
           +TL+EEIPWQNACVCHAMCVEGGMAVAAATAL HGIDPQTSFLISE+L+FAWWMCGIYTG
Sbjct: 91  ETLREEIPWQNACVCHAMCVEGGMAVAAATALFHGIDPQTSFLISETLMFAWWMCGIYTG 150

Query: 98  LFRQSLQKKYHLKNSPCDPCLVHCCMHWCALCQEHREMRNHLSDNVAMQMTVISPPALQA 157
           LFRQSLQKKYHLKNSPCDPCLVHCCMHWCALCQE+REMRNHLSDN+ MQMTVI PPALQA
Sbjct: 151 LFRQSLQKKYHLKNSPCDPCLVHCCMHWCALCQENREMRNHLSDNLTMQMTVIDPPALQA 210

Query: 158 MNIH-QNESAPSTSSLPSQELAITTI 183
           MN +  NE  PS+S +PS+ELAIT I
Sbjct: 211 MNTNDDNEPPPSSSIVPSRELAITPI 236

[Close]

BLAST of Cp4.1LG17g03930 vs. NCBI nr
Match: gi|1009122246|ref|XP_015877901.1| (PREDICTED: cell number regulator 6-like [Ziziphus jujuba])

HSP 1 Score: 251.5 bits (641), Expect = 1.1e-63
Identity = 125/227 (55.07%), Postives = 149/227 (65.64%), Query Frame = 1


Query: 3   MGDGNMQSRYVRLTKDQAPLEDITPGELNQPIQVPQ------------------------ 62
           M DG   SRYV+LTKDQAP+EDI PGELNQPI+VPQ                        
Sbjct: 1   MADGTGNSRYVKLTKDQAPVEDIRPGELNQPIEVPQVLPTRWQPLPESFEPPADEPWTTG 60

Query: 63  ---------------------------TLKEEIPWQNACVCHAMCVEGGMAVAAATALIH 122
                                      +L+E+ PW   C+CHA+C+EGGMAVAAATA+IH
Sbjct: 61  IFGCTEDRDSCWTGLFCPCVLFGRNVESLREDTPWTTPCMCHAVCIEGGMAVAAATAIIH 120

Query: 123 GIDPQTSFLISESLLFAWWMCGIYTGLFRQSLQKKYHLKNSPCDPCLVHCCMHWCALCQE 176
           G+DP+TSFLI E LLFAWWMCGIYTGL RQSLQKKYHLKNSPCDPCLVHCC+HWCALCQE
Sbjct: 121 GVDPRTSFLICEGLLFAWWMCGIYTGLVRQSLQKKYHLKNSPCDPCLVHCCLHWCALCQE 180

[Close]

BLAST of Cp4.1LG17g03930 vs. NCBI nr
Match: gi|1009122056|ref|XP_015877797.1| (PREDICTED: cell number regulator 6-like isoform X2 [Ziziphus jujuba])

HSP 1 Score: 250.0 bits (637), Expect = 3.2e-63
Identity = 125/231 (54.11%), Postives = 149/231 (64.50%), Query Frame = 1


Query: 3   MGDGNMQSRYVRLTKDQAPLEDITPGELNQPIQVPQ------------------------ 62
           M DG   SRYV+LTKDQAP+EDI PGELNQPI+VPQ                        
Sbjct: 1   MADGTGNSRYVKLTKDQAPVEDIRPGELNQPIEVPQLNVRKCNECGQPLPESFEPPADEP 60

Query: 63  -------------------------------TLKEEIPWQNACVCHAMCVEGGMAVAAAT 122
                                          +L+E+ PW   C+CHA+C+EGGMAVAAAT
Sbjct: 61  WTTGIFGCTEDRDSCWTGLFCPCVLFGRNVESLREDTPWTTPCMCHAVCIEGGMAVAAAT 120

Query: 123 ALIHGIDPQTSFLISESLLFAWWMCGIYTGLFRQSLQKKYHLKNSPCDPCLVHCCMHWCA 176
           A+IHG+DP+TSFLI E LLFAWWMCGIYTGL RQSLQKKYHLKNSPCDPCLVHCC+HWCA
Sbjct: 121 AIIHGVDPRTSFLICEGLLFAWWMCGIYTGLVRQSLQKKYHLKNSPCDPCLVHCCLHWCA 180

[Close]

BLAST of Cp4.1LG17g03930 vs. NCBI nr
Match: gi|586674892|ref|XP_006838215.1| (PREDICTED: cell number regulator 6 [Amborella trichopoda])

HSP 1 Score: 248.8 bits (634), Expect = 7.2e-63
Identity = 122/224 (54.46%), Postives = 140/224 (62.50%), Query Frame = 1


Query: 3   MGDGNMQSRYVRLTKDQ-APLEDITPGELNQPIQVPQT---------------------- 62
           MGD  +QSRYV+LTK+Q AP++DITPGELNQP+QVPQ                       
Sbjct: 1   MGDDTLQSRYVKLTKEQDAPVDDITPGELNQPLQVPQLVVHRCRECGQPLPDSYEHPADE 60

Query: 63  ---------------------------------LKEEIPWQNACVCHAMCVEGGMAVAAA 122
                                            +KEEIPW   C CHA+ VEGG+A+AAA
Sbjct: 61  PWTTGIFGCAEDTDSCWLGLFCPCVLFGRNVERIKEEIPWTRPCTCHAIFVEGGIALAAA 120

Query: 123 TALIHGIDPQTSFLISESLLFAWWMCGIYTGLFRQSLQKKYHLKNSPCDPCLVHCCMHWC 171
           TA+ HG+DP+TSFLI E L FAWWMCGIYTGLFRQ LQKKYHLKNSPCDPCLVHCCMHWC
Sbjct: 121 TAIFHGVDPRTSFLIGEGLFFAWWMCGIYTGLFRQELQKKYHLKNSPCDPCLVHCCMHWC 180

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g03930 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CNR6_MAIZE	3.2e-47	60.98	Cell number regulator 6 OS=Zea mays GN=CNR6 PE=2 SV=1	[more]
PCR10_ARATH	3.6e-06	38.71	Protein PLANT CADMIUM RESISTANCE 10 OS=Arabidopsis thaliana GN=PCR10 PE=2 SV=1	[more]

BLAST of Cp4.1LG17g03930 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDV6_CUCSA	1.4e-70	87.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G108550 PE=4 SV=1	[more]
W1NZK6_AMBTC	5.0e-63	54.46	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00106p00154260 PE=4 SV=...	[more]
A0A067K997_JATCU	1.6e-61	81.34	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14621 PE=4 SV=1	[more]
B9RD43_RICCO	1.4e-60	79.26	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1609360 PE=4 SV=1	[more]
W9R3S9_9ROSA	4.4e-59	76.09	Uncharacterized protein OS=Morus notabilis GN=L484_021797 PE=4 SV=1	[more]

BLAST of Cp4.1LG17g03930 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G45010.1	3.2e-53	66.67	PLAC8 family protein	[more]
AT5G51400.1	1.7e-46	57.86	PLAC8 family protein	[more]
AT2G40935.1	2.0e-07	38.71	PLAC8 family protein	[more]

BLAST of Cp4.1LG17g03930 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445702\|ref\|XP_004140611.1\|	2.1e-70	87.67	PREDICTED: cell number regulator 6 [Cucumis sativus]	[more]
gi\|659120414\|ref\|XP_008460181.1\|	1.3e-69	86.30	PREDICTED: cell number regulator 6 [Cucumis melo]	[more]
gi\|1009122246\|ref\|XP_015877901.1\|	1.1e-63	55.07	PREDICTED: cell number regulator 6-like [Ziziphus jujuba]	[more]
gi\|1009122056\|ref\|XP_015877797.1\|	3.2e-63	54.11	PREDICTED: cell number regulator 6-like isoform X2 [Ziziphus jujuba]	[more]
gi\|586674892\|ref\|XP_006838215.1\|	7.2e-63	54.46	PREDICTED: cell number regulator 6 [Amborella trichopoda]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006461	PLAC_motif_containing

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g03930.1	Cp4.1LG17g03930.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006461	PLAC8 motif-containing protein	PFAM	PF04749	PLAC8	coord: 50..134 score: 3.1
IPR006461	PLAC8 motif-containing protein	TIGRFAMs	TIGR01571	TIGR01571	coord: 51..136 score: 1.1
None	No IPR available	PANTHER	PTHR15907	FAMILY NOT NAMED	coord: 7..171 score: 2.9
None	No IPR available	PANTHER	PTHR15907:SF35	GENE1000 PROTEIN-RELATED	coord: 7..171 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG17g03930	Cucsa.120690	Cucumber (Gy14) v1	cgycpeB0295
Cp4.1LG17g03930	CmaCh08G008590	Cucurbita maxima (Rimu)	cmacpeB916
Cp4.1LG17g03930	Cla006675	Watermelon (97103) v1	cpewmB335
Cp4.1LG17g03930	Csa6G108550	Cucumber (Chinese Long) v2	cpecuB328
Cp4.1LG17g03930	MELO3C022235	Melon (DHL92) v3.5.1	cpemeB285
Cp4.1LG17g03930	ClCG06G002950	Watermelon (Charleston Gray)	cpewcgB299
Cp4.1LG17g03930	CSPI06G08700	Wild cucumber (PI 183967)	cpecpiB329
Cp4.1LG17g03930	Lsi09G016370	Bottle gourd (USVL1VR-Ls)	cpelsiB248
Cp4.1LG17g03930	MELO3C022235.2	Melon (DHL92) v3.6.1	cpemedB333
Cp4.1LG17g03930	CsaV3_6G009070	Cucumber (Chinese Long) v3	cpecucB0410
Cp4.1LG17g03930	Bhi12G001924	Wax gourd	cpewgoB0381
Cp4.1LG17g03930	CsGy6G008800	Cucumber (Gy14) v2	cgybcpeB790
Cp4.1LG17g03930	Carg13873	Silver-seed gourd	carcpeB0851

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG17g03930	Cucurbita pepo (Zucchini)	cpecpeB159
Cp4.1LG17g03930	Cucurbita maxima (Rimu)	cmacpeB378
Cp4.1LG17g03930	Cucurbita moschata (Rifu)	cmocpeB341
Cp4.1LG17g03930	Cucurbita moschata (Rifu)	cmocpeB853