Cp4.1LG17g02490 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG17g02490
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG17 : 2130171 .. 2130608 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAACTTCCCATATTCTTTTTTATGCTTCTTTCAATCATTATTACACTAAGTTTCTTCCTCTTCTTCTATGAGAGTTCGAACCATCGAAACACCGTCCTTCAACTGTACGAAATCATTCGGGTAGTGAAATCGAGTCGTGGGTCGGCGTTTCTTGCATTTAACGCCATCATGTTCATCCTCTTTGGCGAGAAGTTTAAGCAGTCACCGAGTGAAGAAAAGGAGATAGGAGAACAGGTAGAGAGCTATAAAGATCATGATAGACGTGACGATGAACTGATCACTCATCATATTTATGTTTATGATAGTTGCGATGAAGACGGTGATAAAAGGTTTCAAGATGATTTAGAGAAGAAAGCTCAAGAGTTTATTGAGACGATGTACTCTTTTTGGAGGGAAGAATTGGTTTGTGACAGATTTCTCAAGGTTCATTGA

mRNA sequence

ATGAAGAAACTTCCCATATTCTTTTTTATGCTTCTTTCAATCATTATTACACTAAGTTTCTTCCTCTTCTTCTATGAGAGTTCGAACCATCGAAACACCGTCCTTCAACTGTACGAAATCATTCGGGTAGTGAAATCGAGTCGTGGGTCGGCGTTTCTTGCATTTAACGCCATCATGTTCATCCTCTTTGGCGAGAAGTTTAAGCAGTCACCGAGTGAAGAAAAGGAGATAGGAGAACAGGTAGAGAGCTATAAAGATCATGATAGACGTGACGATGAACTGATCACTCATCATATTTATGTTTATGATAGTTGCGATGAAGACGGTGATAAAAGGTTTCAAGATGATTTAGAGAAGAAAGCTCAAGAGTTTATTGAGACGATGTACTCTTTTTGGAGGGAAGAATTGGTTTGTGACAGATTTCTCAAGGTTCATTGA

Coding sequence (CDS)

ATGAAGAAACTTCCCATATTCTTTTTTATGCTTCTTTCAATCATTATTACACTAAGTTTCTTCCTCTTCTTCTATGAGAGTTCGAACCATCGAAACACCGTCCTTCAACTGTACGAAATCATTCGGGTAGTGAAATCGAGTCGTGGGTCGGCGTTTCTTGCATTTAACGCCATCATGTTCATCCTCTTTGGCGAGAAGTTTAAGCAGTCACCGAGTGAAGAAAAGGAGATAGGAGAACAGGTAGAGAGCTATAAAGATCATGATAGACGTGACGATGAACTGATCACTCATCATATTTATGTTTATGATAGTTGCGATGAAGACGGTGATAAAAGGTTTCAAGATGATTTAGAGAAGAAAGCTCAAGAGTTTATTGAGACGATGTACTCTTTTTGGAGGGAAGAATTGGTTTGTGACAGATTTCTCAAGGTTCATTGA

Protein sequence

MKKLPIFFFMLLSIIITLSFFLFFYESSNHRNTVLQLYEIIRVVKSSRGSAFLAFNAIMFILFGEKFKQSPSEEKEIGEQVESYKDHDRRDDELITHHIYVYDSCDEDGDKRFQDDLEKKAQEFIETMYSFWREELVCDRFLKVH
Homology
[Close]
BLAST of Cp4.1LG17g02490 vs. TrEMBL
Match: A0A0A0K9S4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G077350 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.0e-18
Identity = 65/119 (54.62%), Postives = 78/119 (65.55%), Query Frame = 1 

Query: 27  SSNHRNTVLQLYEIIRVVKSSRGSAFLAFNAIMFILFGEKFKQSPSEEKEIGEQVESYKD 86
           S  HRN V Q  EI+ VVKSSR S FLA N I+ ILFG+K KQ  S+E+E  E+ +    
Sbjct: 3   SFTHRNVVNQSMEIVLVVKSSRASIFLASNTIILILFGKKLKQLSSKEEE-EERCKDCCS 62

Query: 87  HDRRDDELITHH-IYVYDSCDED--GDKRFQDDLEKKAQEFIETMYSFWREELVCDRFL 143
               D EL ++  I V DSCDED   +   QDDLEKKAQEFI+ M +FWREEL+ DRFL
Sbjct: 63  GCSDDHELNSYEMICVEDSCDEDYCEEGMIQDDLEKKAQEFIDMMNAFWREELIHDRFL 120

[Close]
BLAST of Cp4.1LG17g02490 vs. NCBI nr
Match: gi|700191034|gb|KGN46238.1| (hypothetical protein Csa_6G077350 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 4.3e-18
Identity = 65/119 (54.62%), Postives = 78/119 (65.55%), Query Frame = 1 

Query: 27  SSNHRNTVLQLYEIIRVVKSSRGSAFLAFNAIMFILFGEKFKQSPSEEKEIGEQVESYKD 86
           S  HRN V Q  EI+ VVKSSR S FLA N I+ ILFG+K KQ  S+E+E  E+ +    
Sbjct: 3   SFTHRNVVNQSMEIVLVVKSSRASIFLASNTIILILFGKKLKQLSSKEEE-EERCKDCCS 62

Query: 87  HDRRDDELITHH-IYVYDSCDED--GDKRFQDDLEKKAQEFIETMYSFWREELVCDRFL 143
               D EL ++  I V DSCDED   +   QDDLEKKAQEFI+ M +FWREEL+ DRFL
Sbjct: 63  GCSDDHELNSYEMICVEDSCDEDYCEEGMIQDDLEKKAQEFIDMMNAFWREELIHDRFL 120

The following BLAST results are available for this feature:
BLAST of Cp4.1LG17g02490 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG17g02490 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9S4_CUCSA3.0e-1854.62Uncharacterized protein OS=Cucumis sativus GN=Csa_6G077350 PE=4 SV=1[more]
BLAST of Cp4.1LG17g02490 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG17g02490 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191034|gb|KGN46238.1|4.3e-1854.62hypothetical protein Csa_6G077350 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g02490.1Cp4.1LG17g02490.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG17g02490CmaCh08G009540Cucurbita maxima (Rimu)cmacpeB916
Cp4.1LG17g02490Cla006957Watermelon (97103) v1cpewmB342
Cp4.1LG17g02490Csa6G077350Cucumber (Chinese Long) v2cpecuB323
Cp4.1LG17g02490ClCG06G000360Watermelon (Charleston Gray)cpewcgB300
Cp4.1LG17g02490CSPI06G05840Wild cucumber (PI 183967)cpecpiB324
Cp4.1LG17g02490Lsi09G018990Bottle gourd (USVL1VR-Ls)cpelsiB250
Cp4.1LG17g02490CsaV3_6G006150Cucumber (Chinese Long) v3cpecucB0405
Cp4.1LG17g02490Bhi12G002305Wax gourdcpewgoB0393
Cp4.1LG17g02490CsGy6G005820Cucumber (Gy14) v2cgybcpeB785
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG17g02490Cucurbita pepo (Zucchini)cpecpeB174
Cp4.1LG17g02490Cucurbita pepo (Zucchini)cpecpeB232
Cp4.1LG17g02490Cucumber (Gy14) v1cgycpeB0677
Cp4.1LG17g02490Cucumber (Gy14) v1cgycpeB0954
Cp4.1LG17g02490Cucurbita maxima (Rimu)cmacpeB393
Cp4.1LG17g02490Cucurbita maxima (Rimu)cmacpeB825
Cp4.1LG17g02490Cucurbita moschata (Rifu)cmocpeB357
Cp4.1LG17g02490Cucurbita moschata (Rifu)cmocpeB778
Cp4.1LG17g02490Cucurbita moschata (Rifu)cmocpeB853
Cp4.1LG17g02490Wild cucumber (PI 183967)cpecpiB315
Cp4.1LG17g02490Cucumber (Chinese Long) v2cpecuB313
Cp4.1LG17g02490Bottle gourd (USVL1VR-Ls)cpelsiB271
Cp4.1LG17g02490Watermelon (97103) v1cpewmB332
Cp4.1LG17g02490Melon (DHL92) v3.5.1cpemeB286
Cp4.1LG17g02490Melon (DHL92) v3.5.1cpemeB317
Cp4.1LG17g02490Cucumber (Gy14) v2cgybcpeB357
Cp4.1LG17g02490Melon (DHL92) v3.6.1cpemedB334
Cp4.1LG17g02490Melon (DHL92) v3.6.1cpemedB372
Cp4.1LG17g02490Silver-seed gourdcarcpeB0323
Cp4.1LG17g02490Silver-seed gourdcarcpeB0883
Cp4.1LG17g02490Silver-seed gourdcarcpeB1503
Cp4.1LG17g02490Cucumber (Chinese Long) v3cpecucB0384
Cp4.1LG17g02490Cucumber (Chinese Long) v3cpecucB0389
Cp4.1LG17g02490Wax gourdcpewgoB0387