Cla006957 (gene) Watermelon (97103) v1

Overview
NameCla006957
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr6 : 361219 .. 361668 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAACTTCAAGCATTTTTTCTTTGCATCATCATTGCATCCAGTTTCTTCCTTTCCTTCTTCTTCTTCTCCTGTTTCTTGCCCCCCTTGGTGAGTTCCAAGCACCGAAACATCGTCCTTCAATTGGTCGAAATCATTCGGGTGGTGAAATCGAGTCGTGCATCGGTATTCCTTGCATCTAATGCCATCATTTTCATCCTGTTCAGCGAGAAGTTTAAGCGGTTATTGAGCAAAGGAGAAGGGATAGAAGAACTGGTAGAAAGCTGTAAAGATTGTAGTAGACATAGCAATGAGATGAATAGTAGTGATGAAATTTGTATTGATGATAGTTTTGAAGAAGATTGTGAAGAAGGGCTTCAAGATGATATAGAGAAGAAGGCTCAAGAGTTTATCGACATGATGAATGCTTTTTGGAGGGAAGAATTGATTTGTGATAGGTTTCTTTAG

mRNA sequence

ATGAAGAAACTTCAAGCATTTTTTCTTTGCATCATCATTGCATCCAGTTTCTTCCTTTCCTTCTTCTTCTTCTCCTGTTTCTTGCCCCCCTTGGTGAGTTCCAAGCACCGAAACATCGTCCTTCAATTGGTCGAAATCATTCGGGTGGTGAAATCGAGTCGTGCATCGGTATTCCTTGCATCTAATGCCATCATTTTCATCCTGTTCAGCGAGAAGTTTAAGCGGTTATTGAGCAAAGGAGAAGGGATAGAAGAACTGGTAGAAAGCTGTAAAGATTGTAGTAGACATAGCAATGAGATGAATAGTAGTGATGAAATTTGTATTGATGATAGTTTTGAAGAAGATTGTGAAGAAGGGCTTCAAGATGATATAGAGAAGAAGGCTCAAGAGTTTATCGACATGATGAATGCTTTTTGGAGGGAAGAATTGATTTGTGATAGGTTTCTTTAG

Coding sequence (CDS)

ATGAAGAAACTTCAAGCATTTTTTCTTTGCATCATCATTGCATCCAGTTTCTTCCTTTCCTTCTTCTTCTTCTCCTGTTTCTTGCCCCCCTTGGTGAGTTCCAAGCACCGAAACATCGTCCTTCAATTGGTCGAAATCATTCGGGTGGTGAAATCGAGTCGTGCATCGGTATTCCTTGCATCTAATGCCATCATTTTCATCCTGTTCAGCGAGAAGTTTAAGCGGTTATTGAGCAAAGGAGAAGGGATAGAAGAACTGGTAGAAAGCTGTAAAGATTGTAGTAGACATAGCAATGAGATGAATAGTAGTGATGAAATTTGTATTGATGATAGTTTTGAAGAAGATTGTGAAGAAGGGCTTCAAGATGATATAGAGAAGAAGGCTCAAGAGTTTATCGACATGATGAATGCTTTTTGGAGGGAAGAATTGATTTGTGATAGGTTTCTTTAG

Protein sequence

MKKLQAFFLCIIIASSFFLSFFFFSCFLPPLVSSKHRNIVLQLVEIIRVVKSSRASVFLASNAIIFILFSEKFKRLLSKGEGIEELVESCKDCSRHSNEMNSSDEICIDDSFEEDCEEGLQDDIEKKAQEFIDMMNAFWREELICDRFL
Homology
[Close]
BLAST of Cla006957 vs. TrEMBL
Match: A0A0A0K9S4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G077350 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.2e-31
Identity = 77/121 (63.64%), Postives = 93/121 (76.86%), Query Frame = 1 

Query: 31  LVSSKHRNIVLQLVEIIRVVKSSRASVFLASNAIIFILFSEKFKRLLSKGEGIEELVESC 90
           +VS  HRN+V Q +EI+ VVKSSRAS+FLASN II ILF +K K+L SK E  E   + C
Sbjct: 1   MVSFTHRNVVNQSMEIVLVVKSSRASIFLASNTIILILFGKKLKQLSSKEEEEERCKDCC 60

Query: 91  KDCSRHSNEMNSSDEICIDDSFEED-CEEG-LQDDIEKKAQEFIDMMNAFWREELICDRF 150
             CS   +E+NS + IC++DS +ED CEEG +QDD+EKKAQEFIDMMNAFWREELI DRF
Sbjct: 61  SGCS-DDHELNSYEMICVEDSCDEDYCEEGMIQDDLEKKAQEFIDMMNAFWREELIHDRF 120

[Close]
BLAST of Cla006957 vs. NCBI nr
Match: gi|700191034|gb|KGN46238.1| (hypothetical protein Csa_6G077350 [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 4.5e-31
Identity = 77/121 (63.64%), Postives = 93/121 (76.86%), Query Frame = 1 

Query: 31  LVSSKHRNIVLQLVEIIRVVKSSRASVFLASNAIIFILFSEKFKRLLSKGEGIEELVESC 90
           +VS  HRN+V Q +EI+ VVKSSRAS+FLASN II ILF +K K+L SK E  E   + C
Sbjct: 1   MVSFTHRNVVNQSMEIVLVVKSSRASIFLASNTIILILFGKKLKQLSSKEEEEERCKDCC 60

Query: 91  KDCSRHSNEMNSSDEICIDDSFEED-CEEG-LQDDIEKKAQEFIDMMNAFWREELICDRF 150
             CS   +E+NS + IC++DS +ED CEEG +QDD+EKKAQEFIDMMNAFWREELI DRF
Sbjct: 61  SGCS-DDHELNSYEMICVEDSCDEDYCEEGMIQDDLEKKAQEFIDMMNAFWREELIHDRF 120

The following BLAST results are available for this feature:
BLAST of Cla006957 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9S4_CUCSA3.2e-3163.64Uncharacterized protein OS=Cucumis sativus GN=Csa_6G077350 PE=4 SV=1[more]
BLAST of Cla006957 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191034|gb|KGN46238.1|4.5e-3163.64hypothetical protein Csa_6G077350 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla006957Cla006957.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROFILEPS51257PROKAR_LIPOPROTEINcoord: 1..26
score:

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla006957Cla97C06G109620Watermelon (97103) v2wmwmbB407
Cla006957Csa6G077350Cucumber (Chinese Long) v2cuwmB537
Cla006957ClCG06G000360Watermelon (Charleston Gray)wcgwmB345
Cla006957CSPI06G05840Wild cucumber (PI 183967)cpiwmB556
Cla006957CmaCh08G009540Cucurbita maxima (Rimu)cmawmB874
Cla006957Lsi09G018990Bottle gourd (USVL1VR-Ls)lsiwmB041
Cla006957Cp4.1LG17g02490Cucurbita pepo (Zucchini)cpewmB342
Cla006957CsGy6G005820Cucumber (Gy14) v2cgybwmB501
Cla006957CsaV3_6G006150Cucumber (Chinese Long) v3cucwmB562
Cla006957Bhi12G002305Wax gourdwgowmB099
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla006957Cucumber (Gy14) v1cgywmB666
Cla006957Cucurbita maxima (Rimu)cmawmB251
Cla006957Cucurbita maxima (Rimu)cmawmB326
Cla006957Cucurbita maxima (Rimu)cmawmB353
Cla006957Cucurbita maxima (Rimu)cmawmB810
Cla006957Cucurbita moschata (Rifu)cmowmB241
Cla006957Cucurbita moschata (Rifu)cmowmB320
Cla006957Cucurbita moschata (Rifu)cmowmB348
Cla006957Cucurbita moschata (Rifu)cmowmB801
Cla006957Cucurbita moschata (Rifu)cmowmB862
Cla006957Melon (DHL92) v3.5.1mewmB140
Cla006957Melon (DHL92) v3.5.1mewmB484
Cla006957Melon (DHL92) v3.5.1mewmB488
Cla006957Watermelon (Charleston Gray)wcgwmB309
Cla006957Watermelon (Charleston Gray)wcgwmB314
Cla006957Cucumber (Chinese Long) v2cuwmB276
Cla006957Cucurbita pepo (Zucchini)cpewmB157
Cla006957Cucurbita pepo (Zucchini)cpewmB625
Cla006957Cucurbita pepo (Zucchini)cpewmB854
Cla006957Bottle gourd (USVL1VR-Ls)lsiwmB385
Cla006957Cucumber (Gy14) v2cgybwmB259
Cla006957Melon (DHL92) v3.6.1medwmB138
Cla006957Melon (DHL92) v3.6.1medwmB473
Cla006957Silver-seed gourdcarwmB0221
Cla006957Silver-seed gourdcarwmB0619
Cla006957Silver-seed gourdcarwmB1079
Cla006957Cucumber (Chinese Long) v3cucwmB285
Cla006957Cucumber (Chinese Long) v3cucwmB291
Cla006957Watermelon (97103) v2wmwmbB398
Cla006957Watermelon (97103) v2wmwmbB405
Cla006957Wax gourdwgowmB107
Cla006957Wax gourdwgowmB162
Cla006957Watermelon (97103) v1wmwmB137
Cla006957Watermelon (97103) v1wmwmB140
Cla006957Cucumber (Gy14) v1cgywmB484