CmaCh08G009540 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh08G009540
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr08 : 5960856 .. 5961372 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTATTAAAATATGTTTATAAATATATTTGCCTTTGAAAATTGAAACCCTACATCAAAACAGCCCTAATCAAAGATCCAATTGTTTGTTGTATTCAAGAGGCATGAACAAACTTCCCATATTCTTTTTTTTGCTTCTTTCAATCATTATTACACTAAGTTTCTTCCTCTTCTTCTATTTTCCATCCTCCTCCGAGAGTTCAAAGCATCGAAACTCCGTCCTTCAATTGTACGAAATCATTCGGGTAGTGAAATCGAGTCGTGGGTCGGCGTTTCTTGCATTTAACGCCATCATGCTCATCCTTTTTGGCGAGAAGTTTAAGCAATCACTGAGTGAAGAAGAGGAGATAGGAGAACAGGTAGAGAGCTATAAAGATCATGATAGACGTGACGATGAACTCATCACTCATAATATTTATGTTTATGATAGCTGTGATGAAGACGGTGATGAAAGGTTTCAAGATGATTTAGAGAAGAAAGCTCAAGAGTTTATTGAGATGATGTACTCTTTTTAG

mRNA sequence

ATGAATTTCTTCCTCTTCTTCTATTTTCCATCCTCCTCCGAGAGTTCAAAGCATCGAAACTCCGTCCTTCAATTGTACGAAATCATTCGGGTAGTGAAATCGAGTCGTGGGTCGGCGTTTCTTGCATTTAACGCCATCATGCTCATCCTTTTTGGCGAGAAGTTTAAGCAATCACTGAGTGAAGAAGAGGAGATAGGAGAACAGGTAGAGAGCTATAAAGATCATGATAGACGTGACGATGAACTCATCACTCATAATATTTATGTTTATGATAGCTGTGATGAAGACGGTGATGAAAGGTTTCAAGATGATTTAGAGAAGAAAGCTCAAGAGTTTATTGAGATGATGTACTCTTTTTAG

Coding sequence (CDS)

ATGAATTTCTTCCTCTTCTTCTATTTTCCATCCTCCTCCGAGAGTTCAAAGCATCGAAACTCCGTCCTTCAATTGTACGAAATCATTCGGGTAGTGAAATCGAGTCGTGGGTCGGCGTTTCTTGCATTTAACGCCATCATGCTCATCCTTTTTGGCGAGAAGTTTAAGCAATCACTGAGTGAAGAAGAGGAGATAGGAGAACAGGTAGAGAGCTATAAAGATCATGATAGACGTGACGATGAACTCATCACTCATAATATTTATGTTTATGATAGCTGTGATGAAGACGGTGATGAAAGGTTTCAAGATGATTTAGAGAAGAAAGCTCAAGAGTTTATTGAGATGATGTACTCTTTTTAG

Protein sequence

MNFFLFFYFPSSSESSKHRNSVLQLYEIIRVVKSSRGSAFLAFNAIMLILFGEKFKQSLSEEEEIGEQVESYKDHDRRDDELITHNIYVYDSCDEDGDERFQDDLEKKAQEFIEMMYSF
Homology
[Close]
BLAST of CmaCh08G009540 vs. TrEMBL
Match: A0A0A0K9S4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G077350 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.1e-13
Identity = 60/108 (55.56%), Postives = 70/108 (64.81%), Query Frame = 1 

Query: 15  SSKHRNSVLQLYEIIRVVKSSRGSAFLAFNAIMLILFGEKFKQSLSEEEEIGEQVESYKD 74
           S  HRN V Q  EI+ VVKSSR S FLA N I+LILFG+K KQ LS +EE  E+ +    
Sbjct: 3   SFTHRNVVNQSMEIVLVVKSSRASIFLASNTIILILFGKKLKQ-LSSKEEEEERCKDCCS 62

Query: 75  HDRRDDELITHN-IYVYDSCDEDGDER--FQDDLEKKAQEFIEMMYSF 120
               D EL ++  I V DSCDED  E    QDDLEKKAQEFI+MM +F
Sbjct: 63  GCSDDHELNSYEMICVEDSCDEDYCEEGMIQDDLEKKAQEFIDMMNAF 109

[Close]
BLAST of CmaCh08G009540 vs. NCBI nr
Match: gi|700191034|gb|KGN46238.1| (hypothetical protein Csa_6G077350 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 4.4e-13
Identity = 60/108 (55.56%), Postives = 70/108 (64.81%), Query Frame = 1 

Query: 15  SSKHRNSVLQLYEIIRVVKSSRGSAFLAFNAIMLILFGEKFKQSLSEEEEIGEQVESYKD 74
           S  HRN V Q  EI+ VVKSSR S FLA N I+LILFG+K KQ LS +EE  E+ +    
Sbjct: 3   SFTHRNVVNQSMEIVLVVKSSRASIFLASNTIILILFGKKLKQ-LSSKEEEEERCKDCCS 62

Query: 75  HDRRDDELITHN-IYVYDSCDEDGDER--FQDDLEKKAQEFIEMMYSF 120
               D EL ++  I V DSCDED  E    QDDLEKKAQEFI+MM +F
Sbjct: 63  GCSDDHELNSYEMICVEDSCDEDYCEEGMIQDDLEKKAQEFIDMMNAF 109

The following BLAST results are available for this feature:
BLAST of CmaCh08G009540 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh08G009540 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9S4_CUCSA3.1e-1355.56Uncharacterized protein OS=Cucumis sativus GN=Csa_6G077350 PE=4 SV=1[more]
BLAST of CmaCh08G009540 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh08G009540 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191034|gb|KGN46238.1|4.4e-1355.56hypothetical protein Csa_6G077350 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh08G009540.1CmaCh08G009540.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh08G009540Cla006957Watermelon (97103) v1cmawmB874
CmaCh08G009540Csa6G077350Cucumber (Chinese Long) v2cmacuB895
CmaCh08G009540ClCG06G000360Watermelon (Charleston Gray)cmawcgB801
CmaCh08G009540CSPI06G05840Wild cucumber (PI 183967)cmacpiB915
CmaCh08G009540Cp4.1LG17g02490Cucurbita pepo (Zucchini)cmacpeB916
CmaCh08G009540CsaV3_6G006150Cucumber (Chinese Long) v3cmacucB1065
CmaCh08G009540Cla97C06G109620Watermelon (97103) v2cmawmbB918
CmaCh08G009540Bhi12G002305Wax gourdcmawgoB1095
CmaCh08G009540CsGy6G005820Cucumber (Gy14) v2cgybcmaB864
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh08G009540Watermelon (97103) v2cmawmbB915
CmaCh08G009540Cucurbita maxima (Rimu)cmacmaB299
CmaCh08G009540Cucurbita maxima (Rimu)cmacmaB373
CmaCh08G009540Cucurbita maxima (Rimu)cmacmaB359
CmaCh08G009540Cucurbita maxima (Rimu)cmacmaB556
CmaCh08G009540Cucumber (Gy14) v1cgycmaB0733
CmaCh08G009540Cucumber (Gy14) v1cgycmaB1013
CmaCh08G009540Cucurbita moschata (Rifu)cmacmoB885
CmaCh08G009540Cucurbita moschata (Rifu)cmacmoB886
CmaCh08G009540Cucurbita moschata (Rifu)cmacmoB887
CmaCh08G009540Cucurbita moschata (Rifu)cmacmoB911
CmaCh08G009540Cucurbita moschata (Rifu)cmacmoB912
CmaCh08G009540Wild cucumber (PI 183967)cmacpiB906
CmaCh08G009540Cucumber (Chinese Long) v2cmacuB888
CmaCh08G009540Melon (DHL92) v3.5.1cmameB822
CmaCh08G009540Melon (DHL92) v3.5.1cmameB851
CmaCh08G009540Melon (DHL92) v3.5.1cmameB853
CmaCh08G009540Watermelon (Charleston Gray)cmawcgB798
CmaCh08G009540Watermelon (97103) v1cmawmB870
CmaCh08G009540Watermelon (97103) v1cmawmB872
CmaCh08G009540Cucurbita pepo (Zucchini)cmacpeB895
CmaCh08G009540Bottle gourd (USVL1VR-Ls)cmalsiB818
CmaCh08G009540Bottle gourd (USVL1VR-Ls)cmalsiB836
CmaCh08G009540Cucumber (Gy14) v2cgybcmaB459
CmaCh08G009540Cucumber (Gy14) v2cgybcmaB463
CmaCh08G009540Melon (DHL92) v3.6.1cmamedB920
CmaCh08G009540Melon (DHL92) v3.6.1cmamedB951
CmaCh08G009540Melon (DHL92) v3.6.1cmamedB954
CmaCh08G009540Silver-seed gourdcarcmaB0321
CmaCh08G009540Silver-seed gourdcarcmaB0879
CmaCh08G009540Silver-seed gourdcarcmaB1495
CmaCh08G009540Cucumber (Chinese Long) v3cmacucB1053
CmaCh08G009540Cucumber (Chinese Long) v3cmacucB1060