Cp4.1LG16g08370 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG16g08370
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Imidazole glycerol phosphate synthase subunit HisH
Location	Cp4.1LG16 : 8095738 .. 8098153 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGTCTCTTTCCTTCTCCACTTACCCGCCTTCTCCCCCTTCCAGCAGCCGTCCGATCCCCACTCTCTACTACGCGACCCCAGCGCCACTTTTCTTTCTCCTCTTCTTATTTCACTCTCTGCTGCAACCTTACGCCGCCACGCCAACCCCATCTTCTGCTGCAGCCCCCCATCAATCGGTCGGCTACCTTCAAAACTTGCTTGGATCATTTTTTTTTTTATATTTTTTTTTTTTTCTTCGATTCAACCAAATTTGGTTTAAAATATGATGAATTTTGAATTAGGCCAGTTTTGATTCAAAATTCTGCCAAATTTGATCTATTTTGGATGGAGATTTCTTTGTTTATCCCTTTCTTTCCCGCAGTTTGTTTTCAATTTTATCTTGTGTTCTGTTTTCTATCTGTTTTTTCCCTTGGTATCGTCATTTATTCTTCTTGACCTCGAAGTTCTTTGCTTCTCAGTGATAAGATGCATTCCAGAGATAAAAGTGCAAAAGCGGGATCATCTAGGAACTCGACGGATGTGGAACCTGTAATGAACATGAGAAATATCAAGAAAGAAATTGAATTCCTCAGTAATTTCTCTTTTCCCCCTCAGAATTCAGCTCATTATTTGTGCATAAATCTTTAGAGGGAGTTTCATTATTTCAATCGACGTTAAGAGACTAGTTTCTTTCTGAAATTATAGAGTATGTATGAAAGCCTTGGGTTTAATTTTCTCCTATTTTCTGGTTTTATGTGCCTTTTGATACGCGTGGAGTTTTACATTTGAAGAAAATATACTACAAATCTTATATGTGATGCCATATTGTATTAACGACACACATTGCTTTTTCTTTTTTGTGTACACTGATGGAAAACACAGAAACTATTTTATTTCAACGAAATCAATGGATTAATTATTTCTTTCAATTGAGAATCTTTATATATTATTAGACTTTTATCAAAGAAGGATATGGTAGAGAATGAATCTTCTGAGCCTGTTAGAAATGTATGTCTGTACTAATTATTGTAGTGCTGGTGTAATATACTGAAGAGCTTTGGTAGTTTGGCTTTAGTGGACGCTCATACTTGAGATTTGAGTCAAGCTCCAAAGGAACTGAATAGATGTTGCAACTGTATGTAACTTGCATCCTCGCATTTCCTTTCAGATTCCATTTGTGTACAAGCTACTTTTTAAACATCTTCATGATCACACCTTTCCATAAGGTAGCTTCCCTCGCTTTGACTTCAGATCCCTCTTCTGGTCTTATACCAATATGTATTGACCAAAATGTTTAGTAATTGGTTTGAATGATGTTTGATTGTAAAGCCTCACCCTTTGTTTGGGGAAAATTTATAGTGCTATGATGTTCTTCATACTCATGTCATTCCGTATTTGTCATGTCATAGACGATGTATTACTTCATTTAATAGACTTAGACCCCACACCATTCTTAAATGCTTATGTTATGGCAAATATGCAAACAATGAATGGAGGTAGTTTGGAAAATTTCCATACTACCCTAGACTGTAGTACTAGAAAATTTCCCTTTGTGTGTGCAGTTTTTGGGTAATGAATATAAAAGGAGCAAGTATGAAGTAGCTAATTTGGTGTTTTGTTCTTTATATCAGCCTCCTCTCATATGTCATGGAAAGACAAAAAGGAGATTGAGAGTAGGAAAATTGTTTCTTTGGGTGGAAAGGTACGATTACAAACTATGGATATGTTATTATGGTAAGCTGAATGAATGTAATTTTTAAAGCTTACATCTGACTCTTGTGTTTACCATGGTGCAGCCTCAAAAGAAACAAAGATTGCCTCTAAGTGTAGCACGACCAATCATGAAGAAGCAGAAGGAAAGAGAACAAAAGATGGTACAAGAGGTAAGGAAATCCATAAGATGGGTTACTTTGCTTTTTTCTTTTCTTTTGCCTACATCCACTCGTGTTGTTTGCAGCATTGGAATGTTAGTCAATTTGGCGGGATGGCTAGTAGTAACCACTCTAGAAACTCGTTGGGGAAACGCAAGCCCGAGAACCAGGTTCTTAAGTCGAGTGAAGGCTTTTTCAAACATGGCGTGCTTGATGTCAACCATCTACTACGCCCAGCTCCTTCTAGGAATAGTGACTTCGGAAACGAAATGGCCGGCAAAGGTAGAAGAAAAGGAGGGAAAAAGAAGAATAACAAAAGTAACAAAAAGGGTGGCGGTAAGAAGCGCCATTGAAATCATTCATCACCTACAACGTTCCTGTTTTACAATGGAATATGGATATCCTTTTGTCATATCACATGCAAATTCAATGAAATCTTGCATACCCTTGTTTTGCATATAAATTTATTACGTCCATCTATCCATTGAATGAAATTTTGATTTTGATTTTGTTTTTGTTTTTTTGTTGGATTGGAACCCATTCGTACTTTTCGGCTTCATCTTGC

mRNA sequence

TAGTCTCTTTCCTTCTCCACTTACCCGCCTTCTCCCCCTTCCAGCAGCCGTCCGATCCCCACTCTCTACTACGCGACCCCAGCGCCACTTTTCTTTCTCCTCTTCTTATTTCACTCTCTGCTGCAACCTTACGCCGCCACGCCAACCCCATCTTCTGCTGCAGCCCCCCATCAATCGTGATAAGATGCATTCCAGAGATAAAAGTGCAAAAGCGGGATCATCTAGGAACTCGACGGATGTGGAACCTGTAATGAACATGAGAAATATCAAGAAAGAAATTGAATTCCTCACCTCCTCTCATATGTCATGGAAAGACAAAAAGGAGATTGAGAGTAGGAAAATTGTTTCTTTGGGTGGAAAGCCTCAAAAGAAACAAAGATTGCCTCTAAGTGTAGCACGACCAATCATGAAGAAGCAGAAGGAAAGAGAACAAAAGATGGTACAAGAGCATTGGAATGTTAGTCAATTTGGCGGGATGGCTAGTAGTAACCACTCTAGAAACTCGTTGGGGAAACGCAAGCCCGAGAACCAGGTTCTTAAGTCGAGTGAAGGCTTTTTCAAACATGGCGTGCTTGATGTCAACCATCTACTACGCCCAGCTCCTTCTAGGAATAGTGACTTCGGAAACGAAATGGCCGGCAAAGGTAGAAGAAAAGGAGGGAAAAAGAAGAATAACAAAAGTAACAAAAAGGGTGGCGGTAAGAAGCGCCATTGAAATCATTCATCACCTACAACGTTCCTGTTTTACAATGGAATATGGATATCCTTTTGTCATATCACATGCAAATTCAATGAAATCTTGCATACCCTTGTTTTGCATATAAATTTATTACGTCCATCTATCCATTGAATGAAATTTTGATTTTGATTTTGTTTTTGTTTTTTTGTTGGATTGGAACCCATTCGTACTTTTCGGCTTCATCTTGC

Coding sequence (CDS)

ATGCATTCCAGAGATAAAAGTGCAAAAGCGGGATCATCTAGGAACTCGACGGATGTGGAACCTGTAATGAACATGAGAAATATCAAGAAAGAAATTGAATTCCTCACCTCCTCTCATATGTCATGGAAAGACAAAAAGGAGATTGAGAGTAGGAAAATTGTTTCTTTGGGTGGAAAGCCTCAAAAGAAACAAAGATTGCCTCTAAGTGTAGCACGACCAATCATGAAGAAGCAGAAGGAAAGAGAACAAAAGATGGTACAAGAGCATTGGAATGTTAGTCAATTTGGCGGGATGGCTAGTAGTAACCACTCTAGAAACTCGTTGGGGAAACGCAAGCCCGAGAACCAGGTTCTTAAGTCGAGTGAAGGCTTTTTCAAACATGGCGTGCTTGATGTCAACCATCTACTACGCCCAGCTCCTTCTAGGAATAGTGACTTCGGAAACGAAATGGCCGGCAAAGGTAGAAGAAAAGGAGGGAAAAAGAAGAATAACAAAAGTAACAAAAAGGGTGGCGGTAAGAAGCGCCATTGA

Protein sequence

MHSRDKSAKAGSSRNSTDVEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGMASSNHSRNSLGKRKPENQVLKSSEGFFKHGVLDVNHLLRPAPSRNSDFGNEMAGKGRRKGGKKKNNKSNKKGGGKKRH

Homology

[Close]

BLAST of Cp4.1LG16g08370 vs. TrEMBL
Match: A0A0A0KEY3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G429080 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 2.2e-71
Identity = 154/188 (81.91%), Postives = 162/188 (86.17%), Query Frame = 1


Query: 1   MHSRDKSAKAGSSRNSTDVEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKP 60
           MHSRDK AKAGSSR+STD+E  M MRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKP
Sbjct: 1   MHSRDKRAKAGSSRDSTDMETQMKMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKP 60

Query: 61  QKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGMASSNHSRNSLGKRKPENQVLKS 120
           QKKQRLPLSVARPIMKKQKEREQKMVQEH +V QFGGMASS++SR S GKR+PE QVLKS
Sbjct: 61  QKKQRLPLSVARPIMKKQKEREQKMVQEHSSVRQFGGMASSSNSRKSSGKRRPEEQVLKS 120

Query: 121 SEGFFKHGVLDVNHLLRPA------------PSRNSDFGNEMAGKGRRKGGKKKNNKSNK 177
           SEGFFKHGVLDV HLLRP+            P RN+DFGNEM G GRRKGGKKKNNKS K
Sbjct: 121 SEGFFKHGVLDVKHLLRPSSSRNNGHSRNSDPFRNTDFGNEMGGLGRRKGGKKKNNKSKK 180

[Close]

BLAST of Cp4.1LG16g08370 vs. TrEMBL
Match: A0A0B2PZK2_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_027159 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 4.1e-38
Identity = 100/176 (56.82%), Postives = 127/176 (72.16%), Query Frame = 1


Query: 1   MHSRDKSAKA-GSSRNSTDV-EPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGG 60
           MH   K A   G+ R  TD+ E  M++R I K++E  + SHMSWK++K+IE+R +VSLGG
Sbjct: 4   MHKNRKQAGGHGTPREETDMQEQEMDIRKIMKDVENFSYSHMSWKERKKIENRNVVSLGG 63

Query: 61  KPQKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGMASSNHSRNSLGKRKPENQVL 120
           KPQK QRLPLSVARP+MKKQKEREQKM+QE   + QFGG    + S+ S GK KPEN+ L
Sbjct: 64  KPQKNQRLPLSVARPMMKKQKEREQKMLQERLILGQFGGKLGGS-SKRSAGKHKPENRGL 123

Query: 121 KSSEGFFKHGVLDVNHLLRPAPSRNSDFGNEMAGKGRRKGGKKKNNKSNKKGGGKK 175
           KSSEG F++G+L+V HLL  APSR+ + G  M+   + KGGKKKN   + KGGGKK
Sbjct: 124 KSSEGHFRNGILNVKHLLNSAPSRDRETGTNMSNAWKGKGGKKKN---SNKGGGKK 175

[Close]

BLAST of Cp4.1LG16g08370 vs. TrEMBL
Match: I1J561_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_01G027700 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 4.1e-38
Identity = 100/176 (56.82%), Postives = 127/176 (72.16%), Query Frame = 1


Query: 1   MHSRDKSAKA-GSSRNSTDV-EPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGG 60
           MH   K A   G+ R  TD+ E  M++R I K++E  + SHMSWK++K+IE+R +VSLGG
Sbjct: 4   MHKNRKQAGGHGTPREETDMQEQEMDIRKIMKDVENFSYSHMSWKERKKIENRNVVSLGG 63

Query: 61  KPQKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGMASSNHSRNSLGKRKPENQVL 120
           KPQK QRLPLSVARP+MKKQKEREQKM+QE   + QFGG    + S+ S GK KPEN+ L
Sbjct: 64  KPQKNQRLPLSVARPMMKKQKEREQKMLQERLILGQFGGKLGGS-SKRSAGKHKPENRGL 123

Query: 121 KSSEGFFKHGVLDVNHLLRPAPSRNSDFGNEMAGKGRRKGGKKKNNKSNKKGGGKK 175
           KSSEG F++G+L+V HLL  APSR+ + G  M+   + KGGKKKN   + KGGGKK
Sbjct: 124 KSSEGHFRNGILNVKHLLNSAPSRDRETGTNMSNAWKGKGGKKKN---SNKGGGKK 175

[Close]

BLAST of Cp4.1LG16g08370 vs. TrEMBL
Match: A0A067JAC0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21177 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.1e-35
Identity = 91/169 (53.85%), Postives = 125/169 (73.96%), Query Frame = 1


Query: 12  SSRNSTDVEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVA 71
           +S +  D +   + R I K+IE   +SHM+WK++KE E+RK+VSLGGKP KKQRLPLSVA
Sbjct: 7   ASYSMDDKDHKWDFRQIMKDIELFGASHMTWKERKERENRKVVSLGGKPLKKQRLPLSVA 66

Query: 72  RPIMKKQKEREQKMVQEHWNVSQFGGMASSNHSRNSLGKRKPENQVLKSSEGFFKHGVLD 131
           RP MKKQKERE+KM+QE+  + +FGG   S  ++ S  KRKPE++VL+SSEG+F++GVLD
Sbjct: 67  RPRMKKQKEREEKMLQENLILGRFGGKLGSG-AKRSAEKRKPEDRVLRSSEGYFRNGVLD 126

Query: 132 VNHLLRPAPSRNSDFGNEMAGKGRRKGGKKK----NNKSNKKGGGKKRH 177
           V H++  AP +N+D  ++MA KG++K  KKK     N+   KGGG+KRH
Sbjct: 127 VKHMVHQAPYKNNDSTDQMASKGKKKKKKKKGFGNKNRGKNKGGGRKRH 174

[Close]

BLAST of Cp4.1LG16g08370 vs. TrEMBL
Match: V7CN87_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G255800g PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.5e-35
Identity = 97/178 (54.49%), Postives = 125/178 (70.22%), Query Frame = 1


Query: 3   SRDKSAKAGSSRNSTDV-EPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQ 62
           +R KS + GSSR  TD  EP M++R I K++E  + SHM+WK++K+IE R IVSLGGK  
Sbjct: 48  NRKKSGRHGSSREHTDTQEPEMDIRKIMKDVENFSYSHMTWKERKKIEDRNIVSLGGKAP 107

Query: 63  KKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGMASSNHSRNSLGKRKPENQVLKSS 122
           K QRLPLSVARP+MKKQKEREQ M+QE   + +FGG    + +R S GK KPEN+ LK S
Sbjct: 108 KNQRLPLSVARPMMKKQKEREQIMLQERLIMGKFGGKLGGSSTR-SAGKHKPENKGLKLS 167

Query: 123 EGFFKHGVLDVNHLLRPAPSRNSDFGNEMAGKGRRKGGKK---KNNKSNKKGGGKKRH 177
           EG F++G+L+V HLL  APSR+ + G  M+   + KGG K    N K +KKGGGKK +
Sbjct: 168 EGHFRNGILNVKHLLNSAPSRDRETGTNMSNTWKGKGGNKGRGGNMKHDKKGGGKKHN 224

[Close]

BLAST of Cp4.1LG16g08370 vs. TAIR10
Match: AT2G44820.2 (AT2G44820.2 unknown protein)

HSP 1 Score: 131.7 bits (330), Expect = 4.3e-31
Identity = 88/194 (45.36%), Postives = 119/194 (61.34%), Query Frame = 1


Query: 1   MHSRDKSAKAGSSRNSTDVEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKP 60
           ++ R    K      ST ++  ++ +NI K++    SSHM+WKDKK +E +K+ +LGGK 
Sbjct: 2   VYKRKSMEKKKEGMGST-IDQNLSFKNIMKDVALFGSSHMTWKDKKALEDKKVTALGGKA 61

Query: 61  QKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGMASSNHSRNSLGKRKPENQVLKS 120
           QK  RLPLSVAR  MKKQK+RE+KM++++  + +FGG  SS+  + +  KR PE +VLKS
Sbjct: 62  QKMHRLPLSVARVQMKKQKDREEKMLEQNVILGRFGGGGSSSR-KPAERKRTPEERVLKS 121

Query: 121 SEGFFKHGVLDVNHLLRPAPSRNSD-------------------FGNEMAGKGRRKGGKK 176
           + G FK GVLDV HLLR  PS +SD                    G  +  KG++KGGK 
Sbjct: 122 TGGIFKGGVLDVKHLLRSGPSSSSDRDFKTKKPSRVEKNLGGGGDGGGIKSKGKKKGGKN 181

[Close]

BLAST of Cp4.1LG16g08370 vs. NCBI nr
Match: gi|659097445|ref|XP_008449630.1| (PREDICTED: serine/arginine-rich splicing factor 4 [Cucumis melo])

HSP 1 Score: 279.3 bits (713), Expect = 4.8e-72
Identity = 155/188 (82.45%), Postives = 163/188 (86.70%), Query Frame = 1


Query: 1   MHSRDKSAKAGSSRNSTDVEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKP 60
           MHSRDK AKAGSSR+STD+E  M MRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKP
Sbjct: 1   MHSRDKRAKAGSSRDSTDMETQMKMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKP 60

Query: 61  QKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGMASSNHSRNSLGKRKPENQVLKS 120
           QKKQRLPLSVARPIMKKQKEREQKMVQEH +V QFGGMASS++SR S GKR+PE QVLKS
Sbjct: 61  QKKQRLPLSVARPIMKKQKEREQKMVQEHSSVRQFGGMASSSNSRKSSGKRRPEEQVLKS 120

Query: 121 SEGFFKHGVLDVNHLLRPA------------PSRNSDFGNEMAGKGRRKGGKKKNNKSNK 177
           SEGFFKHGVLDV HLLRP+            P RN+DFGNEM GKGRRKGGKKKNNKS K
Sbjct: 121 SEGFFKHGVLDVKHLLRPSSSRNNGPSRNSDPFRNTDFGNEMGGKGRRKGGKKKNNKSKK 180

[Close]

BLAST of Cp4.1LG16g08370 vs. NCBI nr
Match: gi|449444843|ref|XP_004140183.1| (PREDICTED: uncharacterized protein LOC101203308 [Cucumis sativus])

HSP 1 Score: 276.6 bits (706), Expect = 3.1e-71
Identity = 154/188 (81.91%), Postives = 162/188 (86.17%), Query Frame = 1


Query: 1   MHSRDKSAKAGSSRNSTDVEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKP 60
           MHSRDK AKAGSSR+STD+E  M MRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKP
Sbjct: 1   MHSRDKRAKAGSSRDSTDMETQMKMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKP 60

Query: 61  QKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGMASSNHSRNSLGKRKPENQVLKS 120
           QKKQRLPLSVARPIMKKQKEREQKMVQEH +V QFGGMASS++SR S GKR+PE QVLKS
Sbjct: 61  QKKQRLPLSVARPIMKKQKEREQKMVQEHSSVRQFGGMASSSNSRKSSGKRRPEEQVLKS 120

Query: 121 SEGFFKHGVLDVNHLLRPA------------PSRNSDFGNEMAGKGRRKGGKKKNNKSNK 177
           SEGFFKHGVLDV HLLRP+            P RN+DFGNEM G GRRKGGKKKNNKS K
Sbjct: 121 SEGFFKHGVLDVKHLLRPSSSRNNGHSRNSDPFRNTDFGNEMGGLGRRKGGKKKNNKSKK 180

[Close]

BLAST of Cp4.1LG16g08370 vs. NCBI nr
Match: gi|356497496|ref|XP_003517596.1| (PREDICTED: uncharacterized protein LOC100819044 [Glycine max])

HSP 1 Score: 166.0 bits (419), Expect = 5.9e-38
Identity = 100/176 (56.82%), Postives = 127/176 (72.16%), Query Frame = 1


Query: 1   MHSRDKSAKA-GSSRNSTDV-EPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGG 60
           MH   K A   G+ R  TD+ E  M++R I K++E  + SHMSWK++K+IE+R +VSLGG
Sbjct: 4   MHKNRKQAGGHGTPREETDMQEQEMDIRKIMKDVENFSYSHMSWKERKKIENRNVVSLGG 63

Query: 61  KPQKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGMASSNHSRNSLGKRKPENQVL 120
           KPQK QRLPLSVARP+MKKQKEREQKM+QE   + QFGG    + S+ S GK KPEN+ L
Sbjct: 64  KPQKNQRLPLSVARPMMKKQKEREQKMLQERLILGQFGGKLGGS-SKRSAGKHKPENRGL 123

Query: 121 KSSEGFFKHGVLDVNHLLRPAPSRNSDFGNEMAGKGRRKGGKKKNNKSNKKGGGKK 175
           KSSEG F++G+L+V HLL  APSR+ + G  M+   + KGGKKKN   + KGGGKK
Sbjct: 124 KSSEGHFRNGILNVKHLLNSAPSRDRETGTNMSNAWKGKGGKKKN---SNKGGGKK 175

[Close]

BLAST of Cp4.1LG16g08370 vs. NCBI nr
Match: gi|698524074|ref|XP_009758841.1| (PREDICTED: uncharacterized protein LOC104211479 [Nicotiana sylvestris])

HSP 1 Score: 160.6 bits (405), Expect = 2.5e-36
Identity = 90/157 (57.32%), Postives = 122/157 (77.71%), Query Frame = 1


Query: 20  EPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQK 79
           EP M+ ++I KE+E+L S+HM+WK+KKE+E++KIVSLGGKPQKKQRLPLSVAR +MKKQK
Sbjct: 5   EPKMDFKSILKEVEYLGSAHMTWKEKKELENKKIVSLGGKPQKKQRLPLSVARVMMKKQK 64

Query: 80  EREQKMVQEHWNVSQFGGMASSNHSRNSLGKRKPENQVLKSSEGFFKHGVLDVNHLLRPA 139
           ERE+K+ +E+  + +FGG   S+ SR + G+R+PE++VLKS+EG F++GVLDV  LL+P+
Sbjct: 65  EREEKIQEENLILGRFGGNNGSS-SRKAAGRRRPEDRVLKSTEGHFRNGVLDVKDLLKPS 124

Query: 140 PSRNSDFGNEMAGKGRRKGGKKKNNKSNKKGGGKKRH 177
             +  D     A KG++K G KKN    KKG GKKRH
Sbjct: 125 APKAFDSEQSFASKGKKKKGGKKNKGKKKKGPGKKRH 160

[Close]

BLAST of Cp4.1LG16g08370 vs. NCBI nr
Match: gi|802779039|ref|XP_012091301.1| (PREDICTED: uncharacterized protein LOC105649300 [Jatropha curcas])

HSP 1 Score: 157.9 bits (398), Expect = 1.6e-35
Identity = 91/169 (53.85%), Postives = 125/169 (73.96%), Query Frame = 1


Query: 12  SSRNSTDVEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVA 71
           +S +  D +   + R I K+IE   +SHM+WK++KE E+RK+VSLGGKP KKQRLPLSVA
Sbjct: 7   ASYSMDDKDHKWDFRQIMKDIELFGASHMTWKERKERENRKVVSLGGKPLKKQRLPLSVA 66

Query: 72  RPIMKKQKEREQKMVQEHWNVSQFGGMASSNHSRNSLGKRKPENQVLKSSEGFFKHGVLD 131
           RP MKKQKERE+KM+QE+  + +FGG   S  ++ S  KRKPE++VL+SSEG+F++GVLD
Sbjct: 67  RPRMKKQKEREEKMLQENLILGRFGGKLGSG-AKRSAEKRKPEDRVLRSSEGYFRNGVLD 126

Query: 132 VNHLLRPAPSRNSDFGNEMAGKGRRKGGKKK----NNKSNKKGGGKKRH 177
           V H++  AP +N+D  ++MA KG++K  KKK     N+   KGGG+KRH
Sbjct: 127 VKHMVHQAPYKNNDSTDQMASKGKKKKKKKKGFGNKNRGKNKGGGRKRH 174

The following BLAST results are available for this feature:

BLAST of Cp4.1LG16g08370 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG16g08370 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEY3_CUCSA	2.2e-71	81.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G429080 PE=4 SV=1	[more]
A0A0B2PZK2_GLYSO	4.1e-38	56.82	Uncharacterized protein OS=Glycine soja GN=glysoja_027159 PE=4 SV=1	[more]
I1J561_SOYBN	4.1e-38	56.82	Uncharacterized protein OS=Glycine max GN=GLYMA_01G027700 PE=4 SV=1	[more]
A0A067JAC0_JATCU	1.1e-35	53.85	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21177 PE=4 SV=1	[more]
V7CN87_PHAVU	2.5e-35	54.49	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G255800g PE=4 SV=1	[more]

BLAST of Cp4.1LG16g08370 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G44820.2	4.3e-31	45.36	unknown protein	[more]

BLAST of Cp4.1LG16g08370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659097445\|ref\|XP_008449630.1\|	4.8e-72	82.45	PREDICTED: serine/arginine-rich splicing factor 4 [Cucumis melo]	[more]
gi\|449444843\|ref\|XP_004140183.1\|	3.1e-71	81.91	PREDICTED: uncharacterized protein LOC101203308 [Cucumis sativus]	[more]
gi\|356497496\|ref\|XP_003517596.1\|	5.9e-38	56.82	PREDICTED: uncharacterized protein LOC100819044 [Glycine max]	[more]
gi\|698524074\|ref\|XP_009758841.1\|	2.5e-36	57.32	PREDICTED: uncharacterized protein LOC104211479 [Nicotiana sylvestris]	[more]
gi\|802779039\|ref\|XP_012091301.1\|	1.6e-35	53.85	PREDICTED: uncharacterized protein LOC105649300 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027973	DUF4602

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG16g08370.1	Cp4.1LG16g08370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027973	Protein of unknown function DUF4602	PFAM	PF15375	DUF4602	coord: 4..105 score: 1.8
None	No IPR available	PANTHER	PTHR28096	FAMILY NOT NAMED	coord: 3..176 score: 3.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG16g08370	Cucsa.086830	Cucumber (Gy14) v1	cgycpeB0160
Cp4.1LG16g08370	CmaCh20G001240	Cucurbita maxima (Rimu)	cmacpeB564
Cp4.1LG16g08370	CmoCh20G001330	Cucurbita moschata (Rifu)	cmocpeB517
Cp4.1LG16g08370	Cla008592	Watermelon (97103) v1	cpewmB287
Cp4.1LG16g08370	Csa6G429080	Cucumber (Chinese Long) v2	cpecuB281
Cp4.1LG16g08370	MELO3C014544	Melon (DHL92) v3.5.1	cpemeB278
Cp4.1LG16g08370	ClCG02G022680	Watermelon (Charleston Gray)	cpewcgB255
Cp4.1LG16g08370	CSPI06G23670	Wild cucumber (PI 183967)	cpecpiB283
Cp4.1LG16g08370	Lsi10G011090	Bottle gourd (USVL1VR-Ls)	cpelsiB227
Cp4.1LG16g08370	MELO3C014544.2	Melon (DHL92) v3.6.1	cpemedB324
Cp4.1LG16g08370	CsaV3_6G038800	Cucumber (Chinese Long) v3	cpecucB0348
Cp4.1LG16g08370	Bhi10G000178	Wax gourd	cpewgoB0354
Cp4.1LG16g08370	CsGy6G023010	Cucumber (Gy14) v2	cgybcpeB755
Cp4.1LG16g08370	Carg06865	Silver-seed gourd	carcpeB0733

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG16g08370	Cucurbita pepo (Zucchini)	cpecpeB310
Cp4.1LG16g08370	Cucurbita maxima (Rimu)	cmacpeB627
Cp4.1LG16g08370	Cucurbita moschata (Rifu)	cmocpeB576
Cp4.1LG16g08370	Melon (DHL92) v3.6.1	cpemedB323
Cp4.1LG16g08370	Silver-seed gourd	carcpeB1273