Cp4.1LG16g06890 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG16g06890
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	CBS domain-containing protein
Location	Cp4.1LG16 : 7194951 .. 7198892 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTTTGAAATTTACACTTATTTTAGTTCATCAAAACTTGAAAATAATTTTAGATATTATATTTATTTAAAAGATAAATTAAAAAAATCGCAATCACATAAAAAAAAAAAGAAAAAAAAAAAGAAATTAATACTAAAGATGGATGAGAAAAGCAAGAACAGCGGTGGGGAAACAAAGTGTGTCCAAAAAGAAAAAGAAAAACGAAAGAATCGAGAGATAAAATCGGGTCTAACAGTTCCATATCCGTGAGCTTTTCCTTCCAATAGGTTTCGTTATCTGTACCTCACTAAGCCGTCACTCTTTTTGGTTCTCCACTTCCTTCGTGAATCGAGAGGTTTTCTTCCGGATCTTCATCAGGTATATCTCTAATTTTCTCCATTTCATCCTCATTTTGTTATCCAATCGTCTGAATCTTATCGTTTTCCTGCGATCAACGTTGAACTCTGTGAGGTATTTGGATTTTATTTATCTTCGTCTTCTCTTGCTGGTAGCGACGATTGATTTTTCGCTCGCTCTTCATTTTAATGCGTTCGTCTAGCTCTGCTCGACTGATTGATTGTTTTTCCTTACTGATGTGCTGATCGATTCCTTTTTCTTCTTCCGTTCTTTTGTACTCAGTATATTTAGTGTACTGATCTCGGTTTTAGCGAGCTGGATCGAGTTTGAATCCTGTTTTGTATTACGGACGTTTAATTCGTCATCGATTGCATTAATTAATGGAACTGTGGTGGCTTTGACCAACGCCGGTGGATTCAATAATTGTTCATCTGCGTGTGTAATTAATTGATTTTCTTCATCCGCACTTTCCCCTACACGTTTGTCTGCATTAGATCTTCATATTCATGGACTAAATTACTACGGATAAGGTAAGTAGTTTAATACAGATGAGCTGAGTAATTTATTTCGTAAATGAAGTCTAGCAACTAACTCAGTGGAAAGAGGAAAAATTAGTCATCTCACGTCATGTTAGGAATTTCTGTACATACATTATTGTGCATCAATTGTCAAGGTTCTTCCAGGCTGTTGTTTCTTGTTTTTTTGCTAGGTGGATTTCTAGAGGTAAATTATAAATTAATTGTTAAATTACACTATAAATTTTGAGGTATGTATCTATTTGTCCTCTAAATTTTCAAAAGAATCTTATGTCTAAATTTTTAATTTGTGTCTAAAAGTTTCTTACAAAATTCAAATTTTTGTAAAATTAGTTGATATAATTTTACTTCCTATGAAGCCTTAGACTTCATGATTTTTTTAGAAAATTGAAAGTTTAGTGACCAAGCTTGAAATTTAGAAACTAAATAAAACAGATCTTACACTCTAGTAACTAGAATTCTAATTTAATGTGATAATTTACTAATGTTTTAAATCATCATCAAGGGTGTATTTGTAACGGACTGCTGTTTTCTGATATGGTACGCTCTTCAAAGAGAGCTTATTGTACACATTTTTAAGCGTTTGCTTGAACAGGTGAAGATGCAAGGTGCTGTGCGATCATTTCTATCACATGGAAACATTGTGAAAACTGCTGTTCTGCAACAACTTCGTGTAGCAAACCCCTGTATGAGGCCTGCAATGCTTTCACGCTTTACAACATCAACAAGTTCCGCAAACATTGAAGAGCATGGCTTTGAAAGCACTACGATTGATGACATCTTGAAAGCAAAAGGCAAAAGTGCTGACGGATCATGGCTTTGGTGCACCACAGATGACACAGTTTATGATGCCGTTCAGTCGGTACGCTTCCTTTTGGGAGTTGTTTCTCTTGAACATTTTTATATTTTTTTCATTATTTTGATTAGAACTTGTTAAAAAAAAAAATTGTTTTCTTCTGCTGTTCTTGCTTACACACACTCCCCCTTTTTTTACATAAAAAAGATGACCCAGCACAATGTTGGAGCCTTGGTGGTTGTTAAACCTGCGGAGCAAAATTCAATAGCTGGTATTATAACAGAGAGAGGTACGTGATACAATAAGCTCTGAATAAATGGTTTCAACTACAAAATCTATGGTTCTATCCTAATTTAGAATGAAGAGATTCATTTATACTGTAGTTTGGGACAACTAGCAAATATATGTACTCAGAAATCTTTAGGTTCCAGCATTCTGCAATTGGCTGATTTTTGGAAATTCATACTTCTGATCAGTTCCCATTACGATTGCTAGTCTTTTATTGGTTTTTCGGTGGAGATTTCAAAGTGAGCTGGTTTTTTTTTTTTTAATGTTGTTGTTGGGTGGAGTAAATTTGCATTATTTCCGTAGTTTTGGGTACCCAAAATGGTTTCTACTTGTGATTGTGCCGTGTAGAACTAAAACCCATGTAGAGATTACTCCTACATCGTGGCTTTTCCTCTATTTTTTGTCATTTCTCCTCATGTTCTCCTTCAGTTTTTCTTGTACTATAACCATAGAAGGTTAGTTCTAAGCTTTAGGTCCAATGAAGGCATCTTTCTTGTCTTTTGGAATGTAATATCTGAATTCTGAGCCTTTCTTTTCACACATTTCTAGATTATCTGGAATGTAATATCTGAATTCTGAGCTTTTCTTTTCACACATTTCTAGATTATCTGAGAAAGATTATAGTGCAAGGCAGGTCCTCCAAGTCTACCAAAGTTGGGGATATCATGACTGAGGAGGTATAAACCTGTCACCTTTATATGTCAGCCAGCCTTATTTCTCTACTAGTTGCGTGAGCAATGACGGAAATTAGATGCTTTCAATCAAAAATAAAATTTAAGCCGAAATATCAACAATTTCATTCTATTTTCGTTTATTTGTGTTTGATTTCTTTTAAAATAGTTTCAATTAGCATTTCATTTATAAAATTTAAGCCGAAATATCAACAATTTCATTCTATTTTCGTTTATTTGTGGTTGATTTCTTTTAAAATAGTTTCAATTAGCATTTCATTTATAAATTTTGGAAATGTATTTACAAATAATGTCTTTTCTTGCATGAAGTTAATATGGCTGCACAAAAGATCGACTCTTCCAAGTTCGAATAGCAATGACAAATTCCTTTAATTTTGCAGAACAAACTTATCACTGTGACACCTGACACCAAGGTTTTGCGAGCTATGCAACTTATGACTGGTATTACCTTACTTTACTGTTTAGGTTAAATTATAAAAAAAACACCTCTCAATTTTACTTTTGTTTCGTTACGAAAAATGTTAATTACTCTTGGGAGTAGAAATTCTTTTATTATTTCCAAATGGAAGTCGGGACTTGGAGGGTGGAATGATGTAGTTGCAATCTAGAACGGAAACTTTTGTACAAAATTCTAAAGAATTTCTACTTCAAAGATAATTTTGAAACATTTATAAAACACCCCGAGTAAAATTGCAACTTTTGAAAGAATATGTTCAACGGGCTTTTTTTTTCCTCGTTAAAGAAAAGGTTGTTTTTTTCAGTCTAGCTGCAATGTATATTTATCACTACACCATGAAATGTAACATGGAGTACTCTTGCTTGGTGGGCAGATAATCGAATTAGGCACATACCGGTCATCGATGACAAGGGTATGAAAGGCATGGTATCGATTGGAGACGTGGTTCGGGCTGTGGTGAGCGAGCACCGGGAGGAGCTAAACCGCCTGAATGCTTTCATTCAGGGAGGTTATTGAATTGCTGCTAATGACTTTGCTTTGCTTGCTTGTTTGCTTTGTGATGTTTGGAAAACCAGATGGCTTCAGCTCTTGTACATATGGCCTGGTATGCGCACACTCTCTTATTATATGGTTGTGCTTAATGTTTCTGATACAATAACGGACCGACGATGTATTAATAGACGGTTACTTTCCTCTGCGAAATTTCGCCCTAATTTTCAAACTTCAATGATGATATCTAAAGTCTCCCTTGAGTTTGAGGGACACTCTTGCACCGATCTTTATTATTATTATTATTATTATTATTATTTTATGAATAATTAAAGCATTTTTTGGGGT

mRNA sequence

AATTTTGAAATTTACACTTATTTTAGTTCATCAAAACTTGAAAATAATTTTAGATATTATATTTATTTAAAAGATAAATTAAAAAAATCGCAATCACATAAAAAAAAAAAGAAAAAAAAAAAGAAATTAATACTAAAGATGGATGAGAAAAGCAAGAACAGCGGTGGGGAAACAAAGTGTGTCCAAAAAGAAAAAGAAAAACGAAAGAATCGAGAGATAAAATCGGGTCTAACAGTTCCATATCCGTGAGCTTTTCCTTCCAATAGGTTTCGTTATCTGTACCTCACTAAGCCGTCACTCTTTTTGGTTCTCCACTTCCTTCGTGAATCGAGAGGTTTTCTTCCGGATCTTCATCAGGTGAAGATGCAAGGTGCTGTGCGATCATTTCTATCACATGGAAACATTGTGAAAACTGCTGTTCTGCAACAACTTCGTGTAGCAAACCCCTGTATGAGGCCTGCAATGCTTTCACGCTTTACAACATCAACAAGTTCCGCAAACATTGAAGAGCATGGCTTTGAAAGCACTACGATTGATGACATCTTGAAAGCAAAAGGCAAAAGTGCTGACGGATCATGGCTTTGGTGCACCACAGATGACACAGTTTATGATGCCGTTCAGTCGATTATAGTGCAAGGCAGGTCCTCCAAGTCTACCAAAGTTGGGGATATCATGACTGAGGAGAACAAACTTATCACTGTGACACCTGACACCAAGGTTTTGCGAGCTATGCAACTTATGACTGATAATCGAATTAGGCACATACCGGTCATCGATGACAAGGGTATGAAAGGCATGGTATCGATTGGAGACGTGGTTCGGGCTGTGGTGAGCGAGCACCGGGAGGAGCTAAACCGCCTGAATGCTTTCATTCAGGGAGGTTATTGAATTGCTGCTAATGACTTTGCTTTGCTTGCTTGTTTGCTTTGTGATGTTTGGAAAACCAGATGGCTTCAGCTCTTGTACATATGGCCTGGTATGCGCACACTCTCTTATTATATGGTTGTGCTTAATGTTTCTGATACAATAACGGACCGACGATGTATTAATAGACGGTTACTTTCCTCTGCGAAATTTCGCCCTAATTTTCAAACTTCAATGATGATATCTAAAGTCTCCCTTGAGTTTGAGGGACACTCTTGCACCGATCTTTATTATTATTATTATTATTATTATTATTTTATGAATAATTAAAGCATTTTTTGGGGT

Coding sequence (CDS)

ATGCAAGGTGCTGTGCGATCATTTCTATCACATGGAAACATTGTGAAAACTGCTGTTCTGCAACAACTTCGTGTAGCAAACCCCTGTATGAGGCCTGCAATGCTTTCACGCTTTACAACATCAACAAGTTCCGCAAACATTGAAGAGCATGGCTTTGAAAGCACTACGATTGATGACATCTTGAAAGCAAAAGGCAAAAGTGCTGACGGATCATGGCTTTGGTGCACCACAGATGACACAGTTTATGATGCCGTTCAGTCGATTATAGTGCAAGGCAGGTCCTCCAAGTCTACCAAAGTTGGGGATATCATGACTGAGGAGAACAAACTTATCACTGTGACACCTGACACCAAGGTTTTGCGAGCTATGCAACTTATGACTGATAATCGAATTAGGCACATACCGGTCATCGATGACAAGGGTATGAAAGGCATGGTATCGATTGGAGACGTGGTTCGGGCTGTGGTGAGCGAGCACCGGGAGGAGCTAAACCGCCTGAATGCTTTCATTCAGGGAGGTTATTGA

Protein sequence

MQGAVRSFLSHGNIVKTAVLQQLRVANPCMRPAMLSRFTTSTSSANIEEHGFESTTIDDILKAKGKSADGSWLWCTTDDTVYDAVQSIIVQGRSSKSTKVGDIMTEENKLITVTPDTKVLRAMQLMTDNRIRHIPVIDDKGMKGMVSIGDVVRAVVSEHREELNRLNAFIQGGY

Homology

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BLAST of Cp4.1LG16g06890 vs. Swiss-Prot
Match: CBSX3_ARATH (CBS domain-containing protein CBSX3, mitochondrial OS=Arabidopsis thaliana GN=CBSX3 PE=1 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 8.6e-66
Identity = 134/206 (65.05%), Postives = 152/206 (73.79%), Query Frame = 1


Query: 1   MQGAVRSFLSHGNIVKTAVLQQLRVANPCMRPAMLSRFTTSTSSANIEEHGFESTTIDDI 60
           MQG +RSF+S GN+VK +VLQ LRV NP ++P++    + ST  A +EE GFESTTI D+
Sbjct: 1   MQGVIRSFVSGGNVVKGSVLQHLRVINPAIQPSVFCSRSESTQPARMEESGFESTTISDV 60

Query: 61  LKAKGKSADGSWLWCTTDDTVYDAVQS----------IIVQG------------------ 120
           +K+KGKSADGSWLWCTTDDTVYDAV+S          ++  G                  
Sbjct: 61  MKSKGKSADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQQALAGIITERDYLRKI 120

Query: 121 ----RSSKSTKVGDIMTEENKLITVTPDTKVLRAMQLMTDNRIRHIPVIDDKGMKGMVSI 175
               RSSKSTKVGDIMTEENKLITVTP+TKVLRAMQLMTDNRIRHIPVI DKGM GMVSI
Sbjct: 121 IVQGRSSKSTKVGDIMTEENKLITVTPETKVLRAMQLMTDNRIRHIPVIKDKGMIGMVSI 180

[Close]

BLAST of Cp4.1LG16g06890 vs. TrEMBL
Match: A0A0A0KG88_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G134340 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 7.6e-77
Identity = 162/226 (71.68%), Postives = 171/226 (75.66%), Query Frame = 1


Query: 1   MQGAVRSFLSHGNIVKTAVLQQLRVANPCMRPAMLSRFTTSTSSANIEEHGFESTTIDDI 60
           MQGAVRSFLSHGN+VKTAVLQQ+RVANP MRPAMLSRF+TS SSANIEEHGFESTTIDDI
Sbjct: 1   MQGAVRSFLSHGNVVKTAVLQQIRVANPHMRPAMLSRFSTSASSANIEEHGFESTTIDDI 60

Query: 61  LKAKGKSADGSWLWCTTDDTVYDAVQSI-------------------------------- 120
           LKAKGKSADGSWLWCTT+D+VYDAVQS+                                
Sbjct: 61  LKAKGKSADGSWLWCTTEDSVYDAVQSMTQHNVGALVVVKPAEQNSIAGIITERDYLRKI 120

Query: 121 IVQGRSSKSTKVGDIMTEE--------------------NKLITVTPDTKVLRAMQLMTD 175
           IVQGRSSKSTKVGDIMTEE                    NKLITVTPDTKVL AMQLMTD
Sbjct: 121 IVQGRSSKSTKVGDIMTEEPHKTWERRMAMTICFGLCLQNKLITVTPDTKVLLAMQLMTD 180

[Close]

BLAST of Cp4.1LG16g06890 vs. TrEMBL
Match: A0A067DW69_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028667mg PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.0e-73
Identity = 152/206 (73.79%), Postives = 163/206 (79.13%), Query Frame = 1


Query: 1   MQGAVRSFLSHGNIVKTAVLQQLRVANPCMRPAMLSRFTTSTSSANIEEHGFESTTIDDI 60
           MQGA++SFLSHGNIVK+AVLQ++R+ NP +RP + SRF  S SSA +EEHGFESTTI DI
Sbjct: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFE-SVSSARMEEHGFESTTISDI 60

Query: 61  LKAKGKSADGSWLWCTTDDTVYDAVQS--------------------------------I 120
           LKAKGK ADGSWLWCTTDDTVYDAV+S                                I
Sbjct: 61  LKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 120

Query: 121 IVQGRSSKSTKVGDIMTEENKLITVTPDTKVLRAMQLMTDNRIRHIPVIDDKGMKGMVSI 175
           IVQGRSSKSTKVGDIMTEENKLITV+PDTKVLRAMQLMTDNRIRHIPVIDDKGM GMVSI
Sbjct: 121 IVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSI 180

[Close]

BLAST of Cp4.1LG16g06890 vs. TrEMBL
Match: V4T1P0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003449mg PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 6.6e-73
Identity = 151/205 (73.66%), Postives = 162/205 (79.02%), Query Frame = 1


Query: 1   MQGAVRSFLSHGNIVKTAVLQQLRVANPCMRPAMLSRFTTSTSSANIEEHGFESTTIDDI 60
           MQGA++SFLSHGNIVK+AVLQ++R+ NP +RP + SRF  S SSA +EEHGFESTTI DI
Sbjct: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFE-SVSSARMEEHGFESTTISDI 60

Query: 61  LKAKGKSADGSWLWCTTDDTVYDAVQS--------------------------------I 120
           LKAKGK ADGSWLWCTTDDTVYDAV+S                                I
Sbjct: 61  LKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 120

Query: 121 IVQGRSSKSTKVGDIMTEENKLITVTPDTKVLRAMQLMTDNRIRHIPVIDDKGMKGMVSI 174
           IVQGRSSKSTKVGDIMTEENKLITV+PDTKVLRAMQLMTDNRIRHIPVIDDKGM GMVSI
Sbjct: 121 IVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSI 180

[Close]

BLAST of Cp4.1LG16g06890 vs. TrEMBL
Match: B7FJN7_MEDTR (Cystathionine beta-synthase (CBS) family protein OS=Medicago truncatula GN=MTR_5g076080 PE=2 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 3.4e-69
Identity = 142/206 (68.93%), Postives = 158/206 (76.70%), Query Frame = 1


Query: 1   MQGAVRSFLSHGNIVKTAVLQQLRVANPCMRPAMLSRFTTSTSSANIEEHGFESTTIDDI 60
           MQG +RSFLS+GN++K AVLQ++R+ NP ++P   SRF ++T  A IEEHGFESTTI DI
Sbjct: 1   MQGGLRSFLSNGNVIKNAVLQRVRMVNPLLQPVAFSRFESATP-ARIEEHGFESTTISDI 60

Query: 61  LKAKGKSADGSWLWCTTDDTVYDAVQS--------------------------------I 120
           LK KGK ADGSWLWCTTDDTVYDAV+S                                I
Sbjct: 61  LKGKGKGADGSWLWCTTDDTVYDAVKSMTQNNVGALVVVKPGEEKSIAGIITERDYLRKI 120

Query: 121 IVQGRSSKSTKVGDIMTEENKLITVTPDTKVLRAMQLMTDNRIRHIPVIDDKGMKGMVSI 175
           IVQGRSSKSTKVGDIMTEENKLITVTPDTKVLRAMQLMTDNRIRHIPVI+DKGM GMVSI
Sbjct: 121 IVQGRSSKSTKVGDIMTEENKLITVTPDTKVLRAMQLMTDNRIRHIPVINDKGMLGMVSI 180

[Close]

BLAST of Cp4.1LG16g06890 vs. TrEMBL
Match: G7K5X3_MEDTR (Cystathionine beta-synthase (CBS) family protein OS=Medicago truncatula GN=MTR_5g076080 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 3.4e-69
Identity = 142/206 (68.93%), Postives = 158/206 (76.70%), Query Frame = 1


Query: 1   MQGAVRSFLSHGNIVKTAVLQQLRVANPCMRPAMLSRFTTSTSSANIEEHGFESTTIDDI 60
           MQG +RSFLS+GN++K AVLQ++R+ NP ++P   SRF ++T  A IEEHGFESTTI DI
Sbjct: 50  MQGGLRSFLSNGNVIKNAVLQRVRMVNPLLQPVAFSRFESATP-ARIEEHGFESTTISDI 109

Query: 61  LKAKGKSADGSWLWCTTDDTVYDAVQS--------------------------------I 120
           LK KGK ADGSWLWCTTDDTVYDAV+S                                I
Sbjct: 110 LKGKGKGADGSWLWCTTDDTVYDAVKSMTQNNVGALVVVKPGEEKSIAGIITERDYLRKI 169

Query: 121 IVQGRSSKSTKVGDIMTEENKLITVTPDTKVLRAMQLMTDNRIRHIPVIDDKGMKGMVSI 175
           IVQGRSSKSTKVGDIMTEENKLITVTPDTKVLRAMQLMTDNRIRHIPVI+DKGM GMVSI
Sbjct: 170 IVQGRSSKSTKVGDIMTEENKLITVTPDTKVLRAMQLMTDNRIRHIPVINDKGMLGMVSI 229

[Close]

BLAST of Cp4.1LG16g06890 vs. TAIR10
Match: AT5G10860.1 (AT5G10860.1 Cystathionine beta-synthase (CBS) family protein)

HSP 1 Score: 251.1 bits (640), Expect = 4.9e-67
Identity = 134/206 (65.05%), Postives = 152/206 (73.79%), Query Frame = 1


Query: 1   MQGAVRSFLSHGNIVKTAVLQQLRVANPCMRPAMLSRFTTSTSSANIEEHGFESTTIDDI 60
           MQG +RSF+S GN+VK +VLQ LRV NP ++P++    + ST  A +EE GFESTTI D+
Sbjct: 1   MQGVIRSFVSGGNVVKGSVLQHLRVINPAIQPSVFCSRSESTQPARMEESGFESTTISDV 60

Query: 61  LKAKGKSADGSWLWCTTDDTVYDAVQS----------IIVQG------------------ 120
           +K+KGKSADGSWLWCTTDDTVYDAV+S          ++  G                  
Sbjct: 61  MKSKGKSADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQQALAGIITERDYLRKI 120

Query: 121 ----RSSKSTKVGDIMTEENKLITVTPDTKVLRAMQLMTDNRIRHIPVIDDKGMKGMVSI 175
               RSSKSTKVGDIMTEENKLITVTP+TKVLRAMQLMTDNRIRHIPVI DKGM GMVSI
Sbjct: 121 IVQGRSSKSTKVGDIMTEENKLITVTPETKVLRAMQLMTDNRIRHIPVIKDKGMIGMVSI 180

[Close]

BLAST of Cp4.1LG16g06890 vs. TAIR10
Match: AT1G47271.1 (AT1G47271.1 Cystathionine beta-synthase (CBS) family protein)

HSP 1 Score: 116.3 bits (290), Expect = 1.9e-26
Identity = 66/158 (41.77%), Postives = 93/158 (58.86%), Query Frame = 1


Query: 49  EHGFESTTIDDILKAKGKSADGSWLWCTTDDTVYDAVQS--------------------- 108
           E G E+ T+ D+L  K    D +W+ C T+DTV DAV++                     
Sbjct: 37  EKGLENLTVADVLSTKDTDID-TWISCRTNDTVSDAVKNMAKHNIGSLVVLEPGDQQYIA 96

Query: 109 -----------IIVQGRSSKSTKVGDIMTEENKLITVTPDTKVLRAMQLMTDNRIRHIPV 168
                      II  GRSSK TKVG++MT+E+KL+TV+  T +++AMQLM++N IRH+PV
Sbjct: 97  GIVTERDYMKKIIGAGRSSKLTKVGEVMTDESKLVTVSSGTNIIKAMQLMSENHIRHVPV 156

Query: 169 IDDKGMKGMVSIGDVVRAVVSEHREELNRLNAFIQGGY 175
           ID K + G++S+ DVV+A+V     EL RLN FI+G Y
Sbjct: 157 IDGK-IVGLISMVDVVKAIVDHQNGELKRLNEFIKGDY 192

[Close]

BLAST of Cp4.1LG16g06890 vs. NCBI nr
Match: gi|659112534|ref|XP_008456267.1| (PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Cucumis melo])

HSP 1 Score: 310.8 bits (795), Expect = 1.5e-81
Identity = 164/206 (79.61%), Postives = 172/206 (83.50%), Query Frame = 1


Query: 1   MQGAVRSFLSHGNIVKTAVLQQLRVANPCMRPAMLSRFTTSTSSANIEEHGFESTTIDDI 60
           MQGAVRSFLSHGN+VKTAVLQQ+RVANP MRPAMLSRF+TS SSANIEEHGFESTTIDDI
Sbjct: 1   MQGAVRSFLSHGNVVKTAVLQQIRVANPHMRPAMLSRFSTSASSANIEEHGFESTTIDDI 60

Query: 61  LKAKGKSADGSWLWCTTDDTVYDAVQSI-------------------------------- 120
           LKAKGKSADGSWLWCTT+D+VYDAVQS+                                
Sbjct: 61  LKAKGKSADGSWLWCTTEDSVYDAVQSMTQHNVGALVVVKPAEQNSIAGIITERDYLRKI 120

Query: 121 IVQGRSSKSTKVGDIMTEENKLITVTPDTKVLRAMQLMTDNRIRHIPVIDDKGMKGMVSI 175
           IVQGRSSKSTKVGDIMTEENKLITVTPDTKVLRAMQLMTDNRIRHIPVIDDKGMKGMVSI
Sbjct: 121 IVQGRSSKSTKVGDIMTEENKLITVTPDTKVLRAMQLMTDNRIRHIPVIDDKGMKGMVSI 180

[Close]

BLAST of Cp4.1LG16g06890 vs. NCBI nr
Match: gi|778712976|ref|XP_004139921.2| (PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Cucumis sativus])

HSP 1 Score: 306.6 bits (784), Expect = 2.8e-80
Identity = 162/206 (78.64%), Postives = 171/206 (83.01%), Query Frame = 1


Query: 1   MQGAVRSFLSHGNIVKTAVLQQLRVANPCMRPAMLSRFTTSTSSANIEEHGFESTTIDDI 60
           MQGAVRSFLSHGN+VKTAVLQQ+RVANP MRPAMLSRF+TS SSANIEEHGFESTTIDDI
Sbjct: 64  MQGAVRSFLSHGNVVKTAVLQQIRVANPHMRPAMLSRFSTSASSANIEEHGFESTTIDDI 123

Query: 61  LKAKGKSADGSWLWCTTDDTVYDAVQSI-------------------------------- 120
           LKAKGKSADGSWLWCTT+D+VYDAVQS+                                
Sbjct: 124 LKAKGKSADGSWLWCTTEDSVYDAVQSMTQHNVGALVVVKPAEQNSIAGIITERDYLRKI 183

Query: 121 IVQGRSSKSTKVGDIMTEENKLITVTPDTKVLRAMQLMTDNRIRHIPVIDDKGMKGMVSI 175
           IVQGRSSKSTKVGDIMTEENKLITVTPDTKVL AMQLMTDNRIRHIPVID+KGMKGMVSI
Sbjct: 184 IVQGRSSKSTKVGDIMTEENKLITVTPDTKVLLAMQLMTDNRIRHIPVIDEKGMKGMVSI 243

[Close]

BLAST of Cp4.1LG16g06890 vs. NCBI nr
Match: gi|700191572|gb|KGN46776.1| (hypothetical protein Csa_6G134340 [Cucumis sativus])

HSP 1 Score: 294.7 bits (753), Expect = 1.1e-76
Identity = 162/226 (71.68%), Postives = 171/226 (75.66%), Query Frame = 1


Query: 1   MQGAVRSFLSHGNIVKTAVLQQLRVANPCMRPAMLSRFTTSTSSANIEEHGFESTTIDDI 60
           MQGAVRSFLSHGN+VKTAVLQQ+RVANP MRPAMLSRF+TS SSANIEEHGFESTTIDDI
Sbjct: 1   MQGAVRSFLSHGNVVKTAVLQQIRVANPHMRPAMLSRFSTSASSANIEEHGFESTTIDDI 60

Query: 61  LKAKGKSADGSWLWCTTDDTVYDAVQSI-------------------------------- 120
           LKAKGKSADGSWLWCTT+D+VYDAVQS+                                
Sbjct: 61  LKAKGKSADGSWLWCTTEDSVYDAVQSMTQHNVGALVVVKPAEQNSIAGIITERDYLRKI 120

Query: 121 IVQGRSSKSTKVGDIMTEE--------------------NKLITVTPDTKVLRAMQLMTD 175
           IVQGRSSKSTKVGDIMTEE                    NKLITVTPDTKVL AMQLMTD
Sbjct: 121 IVQGRSSKSTKVGDIMTEEPHKTWERRMAMTICFGLCLQNKLITVTPDTKVLLAMQLMTD 180

[Close]

BLAST of Cp4.1LG16g06890 vs. NCBI nr
Match: gi|568820965|ref|XP_006464969.1| (PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Citrus sinensis])

HSP 1 Score: 284.3 bits (726), Expect = 1.5e-73
Identity = 152/206 (73.79%), Postives = 163/206 (79.13%), Query Frame = 1


Query: 1   MQGAVRSFLSHGNIVKTAVLQQLRVANPCMRPAMLSRFTTSTSSANIEEHGFESTTIDDI 60
           MQGA++SFLSHGNIVK+AVLQ++R+ NP +RP + SRF  S SSA +EEHGFESTTI DI
Sbjct: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFE-SVSSARMEEHGFESTTISDI 60

Query: 61  LKAKGKSADGSWLWCTTDDTVYDAVQS--------------------------------I 120
           LKAKGK ADGSWLWCTTDDTVYDAV+S                                I
Sbjct: 61  LKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 120

Query: 121 IVQGRSSKSTKVGDIMTEENKLITVTPDTKVLRAMQLMTDNRIRHIPVIDDKGMKGMVSI 175
           IVQGRSSKSTKVGDIMTEENKLITV+PDTKVLRAMQLMTDNRIRHIPVIDDKGM GMVSI
Sbjct: 121 IVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSI 180

[Close]

BLAST of Cp4.1LG16g06890 vs. NCBI nr
Match: gi|567878943|ref|XP_006432030.1| (hypothetical protein CICLE_v10003449mg [Citrus clementina])

HSP 1 Score: 281.6 bits (719), Expect = 9.5e-73
Identity = 151/205 (73.66%), Postives = 162/205 (79.02%), Query Frame = 1


Query: 1   MQGAVRSFLSHGNIVKTAVLQQLRVANPCMRPAMLSRFTTSTSSANIEEHGFESTTIDDI 60
           MQGA++SFLSHGNIVK+AVLQ++R+ NP +RP + SRF  S SSA +EEHGFESTTI DI
Sbjct: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFE-SVSSARMEEHGFESTTISDI 60

Query: 61  LKAKGKSADGSWLWCTTDDTVYDAVQS--------------------------------I 120
           LKAKGK ADGSWLWCTTDDTVYDAV+S                                I
Sbjct: 61  LKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 120

Query: 121 IVQGRSSKSTKVGDIMTEENKLITVTPDTKVLRAMQLMTDNRIRHIPVIDDKGMKGMVSI 174
           IVQGRSSKSTKVGDIMTEENKLITV+PDTKVLRAMQLMTDNRIRHIPVIDDKGM GMVSI
Sbjct: 121 IVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSI 180

The following BLAST results are available for this feature:

BLAST of Cp4.1LG16g06890 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CBSX3_ARATH	8.6e-66	65.05	CBS domain-containing protein CBSX3, mitochondrial OS=Arabidopsis thaliana GN=CB...	[more]

BLAST of Cp4.1LG16g06890 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KG88_CUCSA	7.6e-77	71.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G134340 PE=4 SV=1	[more]
A0A067DW69_CITSI	1.0e-73	73.79	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028667mg PE=4 SV=1	[more]
V4T1P0_9ROSI	6.6e-73	73.66	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003449mg PE=4 SV=1	[more]
B7FJN7_MEDTR	3.4e-69	68.93	Cystathionine beta-synthase (CBS) family protein OS=Medicago truncatula GN=MTR_5...	[more]
G7K5X3_MEDTR	3.4e-69	68.93	Cystathionine beta-synthase (CBS) family protein OS=Medicago truncatula GN=MTR_5...	[more]

BLAST of Cp4.1LG16g06890 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G10860.1	4.9e-67	65.05	Cystathionine beta-synthase (CBS) family protein	[more]
AT1G47271.1	1.9e-26	41.77	Cystathionine beta-synthase (CBS) family protein	[more]

BLAST of Cp4.1LG16g06890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112534\|ref\|XP_008456267.1\|	1.5e-81	79.61	PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Cucumis melo]	[more]
gi\|778712976\|ref\|XP_004139921.2\|	2.8e-80	78.64	PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Cucumis sativus]	[more]
gi\|700191572\|gb\|KGN46776.1\|	1.1e-76	71.68	hypothetical protein Csa_6G134340 [Cucumis sativus]	[more]
gi\|568820965\|ref\|XP_006464969.1\|	1.5e-73	73.79	PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Citrus sinensis]	[more]
gi\|567878943\|ref\|XP_006432030.1\|	9.5e-73	73.66	hypothetical protein CICLE_v10003449mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000644	CBS_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0045454	cell redox homeostasis
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005829	cytosol
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0050897	cobalt ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG16g06890.1	Cp4.1LG16g06890.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000644	CBS domain	PFAM	PF00571	CBS	coord: 100..156 score: 3.0
IPR000644	CBS domain	SMART	SM00116	cbs_1	coord: 109..156 score: 1.3
IPR000644	CBS domain	PROFILE	PS51371	CBS	coord: 104..162 score: 1
None	No IPR available	GENE3D	G3DSA:3.10.580.10		coord: 88..157 score: 1.0
None	No IPR available	PANTHER	PTHR11911	INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED	coord: 56..174 score: 5.5
None	No IPR available	unknown	SSF54631	CBS-domain pair	coord: 80..170 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG16g06890	Cucsa.118770	Cucumber (Gy14) v1	cgycpeB0290
Cp4.1LG16g06890	CmaCh20G002940	Cucurbita maxima (Rimu)	cmacpeB564
Cp4.1LG16g06890	CmaCh02G006880	Cucurbita maxima (Rimu)	cmacpeB624
Cp4.1LG16g06890	CmoCh02G006800	Cucurbita moschata (Rifu)	cmocpeB574
Cp4.1LG16g06890	CmoCh20G003200	Cucurbita moschata (Rifu)	cmocpeB517
Cp4.1LG16g06890	Cla013432	Watermelon (97103) v1	cpewmB303
Cp4.1LG16g06890	Csa6G134340	Cucumber (Chinese Long) v2	cpecuB282
Cp4.1LG16g06890	MELO3C019601	Melon (DHL92) v3.5.1	cpemeB247
Cp4.1LG16g06890	ClCG02G018900	Watermelon (Charleston Gray)	cpewcgB266
Cp4.1LG16g06890	CSPI06G10840	Wild cucumber (PI 183967)	cpecpiB284
Cp4.1LG16g06890	Lsi10G014960	Bottle gourd (USVL1VR-Ls)	cpelsiB219
Cp4.1LG16g06890	MELO3C019601.2	Melon (DHL92) v3.6.1	cpemedB301
Cp4.1LG16g06890	CsaV3_6G013290	Cucumber (Chinese Long) v3	cpecucB0349
Cp4.1LG16g06890	Bhi10G000709	Wax gourd	cpewgoB0353
Cp4.1LG16g06890	CsGy6G010950	Cucumber (Gy14) v2	cgybcpeB756
Cp4.1LG16g06890	Carg03409	Silver-seed gourd	carcpeB0465

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG16g06890	Cp4.1LG05g10120	Cucurbita pepo (Zucchini)	cpecpeB308

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG16g06890	Cucurbita maxima (Rimu)	cmacpeB625
Cp4.1LG16g06890	Silver-seed gourd	carcpeB1473