Cp4.1LG15g08070 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG15g08070
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionZinc finger CCCH domain-containing protein
LocationCp4.1LG15 : 8117133 .. 8118224 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCAGTGTTTGTGCTGAGCAACAGAAATTTCAGTTTCAATTTCAACTGCCTTCTTCTTGTTCTAAGATTCTTGAGGACATTAACGGTGAAATGTGCTCTGATTCGCCGCGATTTTCGTTTGCTGTCGAATCTCTTTTGCAGAAATTTTTGCCGTTCAACGGCGAGGATGTAGCGGAGGAAGACGGTGATCCGTATTCGTCCGATCATTTTCGGATGTATGAGTTTAAGGTGTGGAGGTGTACTCGTAGTCGGAGCCATGACTGGACGGATTGTCCGTTTGCTCATCCTGGAGAGAAGGCGCGGCGACGAGATCCTCGTCGGTTTCATTACTCTGGCACGATGTGTCCGGATTTTCGACGCGGCGGTTGTGACCGTGGTGATGGATGTGAGTTCGCTCATGGAGTTTTCGAGTGTTGGCTTCATCCAGCGAGATATCGGACTGAGGCTTGTAAAGATGGAAAGAACTGTAAGAGGAAGGTTTGTTTCTTTGCTCATTCGCCTCGTGAGCTTCGTCTTTTACCGCCGGTGAGTAATTTTCAAGGCGGCTCTTGTTCTTCGCCGAATAAGAGGAGTTCTACTCTCAGATCGGCCGCCGCTGGTTCGAACCACGGCTGTTTATTTTGCCATTGCGGCGGAGCCGCGACTTCCTCGCCGACATCGACGCTTATCGGAATGTCTCATCTCTCTCCGCCACTCTCTCCGCCACTCTCGCCTGTAAAACCTCAGTCGCTAAATGGATTTTCACCGATTTCAAGGTACAATCCAGATCCGTCTAAGTTAAATGGAGTAATAAGCTATAAAGATTCAATGACCGAGCTCATGAACTCAATTGAATCCATGAATATCGACGAATTGAACGCCGCTTTAGCCGCCTCCGCCTCAAGACAGACGATTCCTTGGATCGACGTTTCGTCTCTCAACACTGAAGATCAACTCCAGTTTGTTCTCTCACCTTCCACTCCAAATGTCTCCGCCGCATCGGTTAACTTTTCCGTCAATAACAAAGGTAACGCCGACAATGGCTGGGCCTCCGCCTCTGCCTCCGCCTCCGATCCAGATCTCGGATGGGTTAACGATCTTCTGATGTAA

mRNA sequence

ATGAGCAGTGTTTGTGCTGAGCAACAGAAATTTCAGTTTCAATTTCAACTGCCTTCTTCTTGTTCTAAGATTCTTGAGGACATTAACGGTGAAATGTGCTCTGATTCGCCGCGATTTTCGTTTGCTGTCGAATCTCTTTTGCAGAAATTTTTGCCGTTCAACGGCGAGGATGTAGCGGAGGAAGACGGTGATCCGTATTCGTCCGATCATTTTCGGATGTATGAGTTTAAGGTGTGGAGGTGTACTCGTAGTCGGAGCCATGACTGGACGGATTGTCCGTTTGCTCATCCTGGAGAGAAGGCGCGGCGACGAGATCCTCGTCGGTTTCATTACTCTGGCACGATGTGTCCGGATTTTCGACGCGGCGGTTGTGACCGTGGTGATGGATGTGAGTTCGCTCATGGAGTTTTCGAGTGTTGGCTTCATCCAGCGAGATATCGGACTGAGGCTTGTAAAGATGGAAAGAACTGTAAGAGGAAGGTTTGTTTCTTTGCTCATTCGCCTCGTGAGCTTCGTCTTTTACCGCCGGTGAGTAATTTTCAAGGCGGCTCTTGTTCTTCGCCGAATAAGAGGAGTTCTACTCTCAGATCGGCCGCCGCTGGTTCGAACCACGGCTGTTTATTTTGCCATTGCGGCGGAGCCGCGACTTCCTCGCCGACATCGACGCTTATCGGAATGTCTCATCTCTCTCCGCCACTCTCTCCGCCACTCTCGCCTGTAAAACCTCAGTCGCTAAATGGATTTTCACCGATTTCAAGGTACAATCCAGATCCGTCTAAGTTAAATGGAGTAATAAGCTATAAAGATTCAATGACCGAGCTCATGAACTCAATTGAATCCATGAATATCGACGAATTGAACGCCGCTTTAGCCGCCTCCGCCTCAAGACAGACGATTCCTTGGATCGACGTTTCGTCTCTCAACACTGAAGATCAACTCCAGTTTGTTCTCTCACCTTCCACTCCAAATGTCTCCGCCGCATCGGTTAACTTTTCCGTCAATAACAAAGGTAACGCCGACAATGGCTGGGCCTCCGCCTCTGCCTCCGCCTCCGATCCAGATCTCGGATGGGTTAACGATCTTCTGATGTAA

Coding sequence (CDS)

ATGAGCAGTGTTTGTGCTGAGCAACAGAAATTTCAGTTTCAATTTCAACTGCCTTCTTCTTGTTCTAAGATTCTTGAGGACATTAACGGTGAAATGTGCTCTGATTCGCCGCGATTTTCGTTTGCTGTCGAATCTCTTTTGCAGAAATTTTTGCCGTTCAACGGCGAGGATGTAGCGGAGGAAGACGGTGATCCGTATTCGTCCGATCATTTTCGGATGTATGAGTTTAAGGTGTGGAGGTGTACTCGTAGTCGGAGCCATGACTGGACGGATTGTCCGTTTGCTCATCCTGGAGAGAAGGCGCGGCGACGAGATCCTCGTCGGTTTCATTACTCTGGCACGATGTGTCCGGATTTTCGACGCGGCGGTTGTGACCGTGGTGATGGATGTGAGTTCGCTCATGGAGTTTTCGAGTGTTGGCTTCATCCAGCGAGATATCGGACTGAGGCTTGTAAAGATGGAAAGAACTGTAAGAGGAAGGTTTGTTTCTTTGCTCATTCGCCTCGTGAGCTTCGTCTTTTACCGCCGGTGAGTAATTTTCAAGGCGGCTCTTGTTCTTCGCCGAATAAGAGGAGTTCTACTCTCAGATCGGCCGCCGCTGGTTCGAACCACGGCTGTTTATTTTGCCATTGCGGCGGAGCCGCGACTTCCTCGCCGACATCGACGCTTATCGGAATGTCTCATCTCTCTCCGCCACTCTCTCCGCCACTCTCGCCTGTAAAACCTCAGTCGCTAAATGGATTTTCACCGATTTCAAGGTACAATCCAGATCCGTCTAAGTTAAATGGAGTAATAAGCTATAAAGATTCAATGACCGAGCTCATGAACTCAATTGAATCCATGAATATCGACGAATTGAACGCCGCTTTAGCCGCCTCCGCCTCAAGACAGACGATTCCTTGGATCGACGTTTCGTCTCTCAACACTGAAGATCAACTCCAGTTTGTTCTCTCACCTTCCACTCCAAATGTCTCCGCCGCATCGGTTAACTTTTCCGTCAATAACAAAGGTAACGCCGACAATGGCTGGGCCTCCGCCTCTGCCTCCGCCTCCGATCCAGATCTCGGATGGGTTAACGATCTTCTGATGTAA

Protein sequence

MSSVCAEQQKFQFQFQLPSSCSKILEDINGEMCSDSPRFSFAVESLLQKFLPFNGEDVAEEDGDPYSSDHFRMYEFKVWRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTMCPDFRRGGCDRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLLPPVSNFQGGSCSSPNKRSSTLRSAAAGSNHGCLFCHCGGAATSSPTSTLIGMSHLSPPLSPPLSPVKPQSLNGFSPISRYNPDPSKLNGVISYKDSMTELMNSIESMNIDELNAALAASASRQTIPWIDVSSLNTEDQLQFVLSPSTPNVSAASVNFSVNNKGNADNGWASASASASDPDLGWVNDLLM
Homology
[Close]
BLAST of Cp4.1LG15g08070 vs. Swiss-Prot
Match: C3H2_ARATH (Zinc finger CCCH domain-containing protein 2 OS=Arabidopsis thaliana GN=At1g03790 PE=2 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 4.6e-77
Identity = 174/339 (51.33%), Postives = 213/339 (62.83%), Query Frame = 1 

Query: 61  EDGDPYSSDHFRMYEFKVWRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTMCPDFR 120
           +  DPY+SDHFRM+EFK+ RCTRSRSHDWTDCPFAHPGEKARRRDPRRF YSG +CP+FR
Sbjct: 73  DSDDPYASDHFRMFEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFQYSGEVCPEFR 132

Query: 121 RGG-CDRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLLPPVSN 180
           RGG C RGD CEFAHGVFECWLHP RYRTEACKDGK+CKRKVCFFAHSPR+LR+LPP  N
Sbjct: 133 RGGDCSRGDDCEFAHGVFECWLHPIRYRTEACKDGKHCKRKVCFFAHSPRQLRVLPP-EN 192

Query: 181 FQGGSCSSPNKRSSTLRSAAAGSNHGCLFCHCGGAATSSPTSTLIG-MSHL--SPPLSPP 240
             G S S           + A  N  CLFC      +SSPTSTL+G +SHL  SP LSPP
Sbjct: 193 VSGVSAS----------PSPAAKNPCCLFC------SSSPTSTLLGNLSHLSRSPSLSPP 252

Query: 241 LSPV-KPQSLNGFSPISRYNPDPSKLNGVISYKDSMTELMNSIESMNIDELNAALAASAS 300
           +SP  K  + +     +      +   G ++YKD ++EL+NS++SM++ E  A  A+S+S
Sbjct: 253 MSPANKAAAFSRLRNRAASAVSAAAAAGSMNYKDVLSELVNSLDSMSLAE--ALQASSSS 312

Query: 301 RQTIP-----WIDVSSLNTEDQ------------LQFVLSPSTPN--VSAASVNFSVNN- 360
             T P         SS    +Q            LQF LSPSTP+   ++   NF  ++ 
Sbjct: 313 PVTTPVSAAAAAFASSCGLSNQRLHLQQQQPSSPLQFALSPSTPSYLTNSPQANFFSDDF 372

Query: 361 --KGNADNGWASASA----------SASDPDLGWVNDLL 363
             +    N + + +A          S  DPDLGWVNDLL
Sbjct: 373 TPRRRQMNDFTAMTAVRENTNIEDGSCGDPDLGWVNDLL 392

[Close]
BLAST of Cp4.1LG15g08070 vs. Swiss-Prot
Match: C3H61_ARATH (Zinc finger CCCH domain-containing protein 61 OS=Arabidopsis thaliana GN=At5g44260 PE=2 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 8.6e-68
Identity = 136/240 (56.67%), Postives = 171/240 (71.25%), Query Frame = 1 

Query: 64  DPYSSDHFRMYEFKVWRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTMCPDF-RRG 123
           DPY+ DHFRMYEFK+ RCTRSRSHDWTDCPF+HPGEKARRRDPRRFHY+G +CP+F R G
Sbjct: 54  DPYAGDHFRMYEFKIRRCTRSRSHDWTDCPFSHPGEKARRRDPRRFHYTGEVCPEFSRHG 113

Query: 124 GCDRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLLP--PVSNF 183
            C RGD C FAHGVFECWLHP+RYRTEACKDGK+CKRKVCFFAHSPR+LR+LP  P ++ 
Sbjct: 114 DCSRGDECGFAHGVFECWLHPSRYRTEACKDGKHCKRKVCFFAHSPRQLRVLPPSPENHI 173

Query: 184 QGGSCSSPNKRSSTLRSAAAGSNHGCLFCHCGGAATSSPTSTLIGMSHLSPPLSPPLSPV 243
            GG   SP+   +++ S    +N  CLFC      + SPTSTL+ +S  SP  SPPLSP 
Sbjct: 174 SGGCGGSPSSSPASVLSNK--NNRCCLFC------SHSPTSTLLNLSR-SPSSSPPLSPA 233

Query: 244 KPQSLNGFSPISRYNPDPSKLNGVISYKDSMTELMNSIESMNIDELNAALAASASRQTIP 301
                + FS +SR      +   V++      EL++S++S+++ E  A  A+S+S  T+P
Sbjct: 234 --DKADAFSRLSR------RRTAVLN------ELISSLDSLSLTE--ALAASSSSPVTMP 268

[Close]
BLAST of Cp4.1LG15g08070 vs. Swiss-Prot
Match: C3H2_ORYSJ (Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica GN=Os01g0192000 PE=2 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 1.6e-58
Identity = 119/210 (56.67%), Postives = 137/210 (65.24%), Query Frame = 1 

Query: 43  VESLLQKFLPFN----GEDVAEEDG------DPYSSDHFRMYEFKVWRCTRSRSHDWTDC 102
           V + L+ +LP N    G D  EE        D Y+ D FRMYEFKV RC R RSHDWT+C
Sbjct: 39  VIAALRDYLPANDVGVGADEEEEAAAMAAAVDAYACDEFRMYEFKVRRCARGRSHDWTEC 98

Query: 103 PFAHPGEKARRRDPRRFHYSGTMCPDFRRGGCDRGDGCEFAHGVFECWLHPARYRTEACK 162
           PFAHPGEKARRRDPR++HYSGT CPDFR+GGC RGD CE+AHGVFECWLHPARYRT+ CK
Sbjct: 99  PFAHPGEKARRRDPRKYHYSGTACPDFRKGGCKRGDACEYAHGVFECWLHPARYRTQPCK 158

Query: 163 DGKNCKRKVCFFAHSPRELRLLPPVSNFQGGSCSSPNKRS---STLRSAAAGSNHGCLFC 222
           DG  C+R+VCFFAH+P +LR+LP   +      SSP   S   S LR  A  S       
Sbjct: 159 DGTACRRRVCFFAHTPDQLRVLPAQQSSPRSVASSPLAESYDGSPLRRQAFES------Y 218

Query: 223 HCGGAATSSPTSTLIGMSHLSPPLSPPLSP 240
                 +SSPTSTL+      P  SPPLSP
Sbjct: 219 LTKTIMSSSPTSTLMSPPKSPPSESPPLSP 242

[Close]
BLAST of Cp4.1LG15g08070 vs. Swiss-Prot
Match: C3H20_ARATH (Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana GN=At2g19810 PE=2 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.2e-56
Identity = 100/166 (60.24%), Postives = 117/166 (70.48%), Query Frame = 1 

Query: 18  PSSCSKILEDINGEMCSDSPRFSFAVESLLQKFLPFNGEDVAEEDG--------DPYSSD 77
           P S    + DI G     S       E  LQ++LP N  D   +          D Y+ D
Sbjct: 20  PLSEDLTVSDIYGSPDGGSSMMEALAE--LQRYLPSNEPDPDSDPDLSGPDSPIDAYTCD 79

Query: 78  HFRMYEFKVWRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTMCPDFRRGGCDRGDG 137
           HFRMYEFKV RC R RSHDWT+CP+AHPGEKARRRDPR+FHYSGT CP+FR+G C RGD 
Sbjct: 80  HFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPEFRKGCCKRGDA 139

Query: 138 CEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLLP 176
           CEF+HGVFECWLHPARYRT+ CKDG NC+R+VCFFAHSP ++R+LP
Sbjct: 140 CEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPDQIRVLP 183

[Close]
BLAST of Cp4.1LG15g08070 vs. Swiss-Prot
Match: C3H49_ARATH (Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana GN=At4g29190 PE=2 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 2.6e-56
Identity = 94/136 (69.12%), Postives = 107/136 (78.68%), Query Frame = 1 

Query: 47  LQKFLPFNGEDVA--------EEDGDPYSSDHFRMYEFKVWRCTRSRSHDWTDCPFAHPG 106
           LQ++LP N  D          +   D YS DHFRMY+FKV RC R RSHDWT+CP+AHPG
Sbjct: 48  LQRYLPSNEPDPESYPDLLGPDSPIDAYSCDHFRMYDFKVRRCARGRSHDWTECPYAHPG 107

Query: 107 EKARRRDPRRFHYSGTMCPDFRRGGCDRGDGCEFAHGVFECWLHPARYRTEACKDGKNCK 166
           EKARRRDPR++HYSGT CPDFR+GGC +GD CEFAHGVFECWLHPARYRT+ CKDG NC 
Sbjct: 108 EKARRRDPRKYHYSGTACPDFRKGGCKKGDSCEFAHGVFECWLHPARYRTQPCKDGGNCL 167

Query: 167 RKVCFFAHSPRELRLL 175
           RK+CFFAHSP +LR L
Sbjct: 168 RKICFFAHSPDQLRFL 183

[Close]
BLAST of Cp4.1LG15g08070 vs. TrEMBL
Match: A0A0A0K2E3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G049250 PE=4 SV=1)

HSP 1 Score: 579.3 bits (1492), Expect = 3.2e-162
Identity = 304/390 (77.95%), Postives = 319/390 (81.79%), Query Frame = 1 

Query: 2   SSVCAEQQ-------KFQFQFQLPSSCSKILEDING-------EMCSDSPRFSFAVESLL 61
           SSVCA+ Q        FQ      S  S  L  IN        EM SDSPRFS+AVESLL
Sbjct: 3   SSVCADHQHNKSPFSSFQSSSSSSSCSSSFLHHINLPPTKNHLEMSSDSPRFSYAVESLL 62

Query: 62  QKFLPFNGEDVAEEDGDPYSSDHFRMYEFKVWRCTRSRSHDWTDCPFAHPGEKARRRDPR 121
           QKFLPFNGED  EEDGDPYSSDHFRMYEFKV RCTRSRSHDWTDCPFAHPGEKARRRDPR
Sbjct: 63  QKFLPFNGEDELEEDGDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPR 122

Query: 122 RFHYSGTMCPDFRRGGCDRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHS 181
           RFHYSGTMCP+FRRGGC RGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHS
Sbjct: 123 RFHYSGTMCPEFRRGGCGRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHS 182

Query: 182 PRELRLLPPVSNFQGGSCSSPNKR--SSTLR--SAAAGSNHGCLFCHCGGAA-TSSPTST 241
           PRELRLLPPVSNFQ GSCSSPN +  SS+LR  S A+ SNH CLFCHCGGAA TSSPTST
Sbjct: 183 PRELRLLPPVSNFQTGSCSSPNNKRSSSSLRSPSTASASNHCCLFCHCGGAAVTSSPTST 242

Query: 242 LIGMSHLSPPLSPPLSPVKPQSLNGFSPISRYNPDPSKLNGVISYKDSMTELMNSIESMN 301
           L GMSHLSPP SPP SP KP  +NGFSPISRYNPD SKLNGV+SYKD++TELM+SIESMN
Sbjct: 243 LFGMSHLSPPHSPPHSPGKP--INGFSPISRYNPDQSKLNGVLSYKDALTELMSSIESMN 302

Query: 302 IDELNAALAASAS-----RQTIPWIDVSSLNTEDQLQFVLSPSTPNVSAASVNFSVNNKG 361
           +D+ NA LAA+A+     RQTIPWIDVSSLN EDQLQFVLSPSTPNVS ASV FSV N  
Sbjct: 303 MDDANATLAAAAAAASGPRQTIPWIDVSSLNNEDQLQFVLSPSTPNVSTASVKFSVENNN 362

Query: 362 NADNGW----ASASASASDPDLGWVNDLLM 364
           N  NGW    ASAS SASDPDLGWVNDLLM
Sbjct: 363 N--NGWASAYASASTSASDPDLGWVNDLLM 388

[Close]
BLAST of Cp4.1LG15g08070 vs. TrEMBL
Match: U5FMC6_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0017s04510g PE=4 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 5.6e-106
Identity = 223/397 (56.17%), Postives = 271/397 (68.26%), Query Frame = 1 

Query: 1   MSSVCAEQQKFQFQFQL--PSSCSKILEDINGEMCSDSPRFSFA----VESLLQKFLPFN 60
           MS++CAEQ K     QL  P    + LE + G++ +             E+ LQ+FLP+N
Sbjct: 1   MSTICAEQHKPYTPHQLLSPKRPFRDLEILPGKLLTKKTHQETLDMSPYETNLQRFLPYN 60

Query: 61  ---GEDVAEEDGDPYSSDHFRMYEFKVWRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHY 120
               E V + + DPYSSDHFRMYEFKV RCTRSRSHDWTDCPFAHPGEKARRRDPRRFHY
Sbjct: 61  DYSNEKVLDGELDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHY 120

Query: 121 SGTMCPDFRRGGCDRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPREL 180
           SGT+CP+F+RGGC RG+ CEF+HGVFECWLHP+RYRTEACKDGKNCKRKVCFFAHSPR+L
Sbjct: 121 SGTVCPEFKRGGCSRGENCEFSHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSPRQL 180

Query: 181 RLLPPVSNFQGGSCSSPNKRSSTLRSAAAGSNHG--CLFCHCGGAATSSPTSTLIGMSHL 240
           R+LP VS+           R+ +L S  +  NH   C+ CH   + TSSPTSTL+GMSH+
Sbjct: 181 RILPEVSS-----------RNKSLASPCSSLNHSHCCVVCH---SMTSSPTSTLLGMSHM 240

Query: 241 SPP----LSPPLSPVKPQSLNGFSPISRYNPDPSKLN-GVISYKDSMTELMNSIESMNID 300
           SPP    LSPPLSPVK QSL+GFSPISRYN   SK   GV+SYKD ++ELM+S+E+MN +
Sbjct: 241 SPPLSPSLSPPLSPVKHQSLSGFSPISRYNETLSKFRAGVVSYKDVLSELMSSLEAMNFN 300

Query: 301 E---LNAALAASAS-----RQTIPW-IDVSSLNTEDQLQFVLSPSTPNVSAASVN----- 360
           E   +++ ++ S +       T PW IDV S + EDQ QF+LSPSTP  S+   N     
Sbjct: 301 EGASVSSPMSLSTNHNRNVNSTTPWNIDV-SFSGEDQPQFILSPSTPTPSSKFFNGDCSS 360

Query: 361 ---FSVNNKGNADNGWASAS-ASASDPDLGWVNDLLM 364
                V++K N  N       A  SDPDLGWVN+LLM
Sbjct: 361 NKGLFVDDKINDHNNIGDGGLACTSDPDLGWVNELLM 382

[Close]
BLAST of Cp4.1LG15g08070 vs. TrEMBL
Match: A0A059DH66_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01839 PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 1.4e-101
Identity = 197/339 (58.11%), Postives = 244/339 (71.98%), Query Frame = 1 

Query: 44  ESLLQKFLPFN-GEDVAEEDGDPYSSDHFRMYEFKVWRCTRSRSHDWTDCPFAHPGEKAR 103
           E+ LQ+FLPFN G D  +ED DPYSSDHFRM+EFKV RCTRSRSHDWTDCPFAHPGEKAR
Sbjct: 36  ETPLQRFLPFNNGGDDEDEDSDPYSSDHFRMFEFKVRRCTRSRSHDWTDCPFAHPGEKAR 95

Query: 104 RRDPRRFHYSGTMCPDFRRGGCDRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVC 163
           RRDPR++HYSGT+C ++RRG C RGD CEFAHGVFECWLHP++YRTEACKDGKNCKRKVC
Sbjct: 96  RRDPRKYHYSGTVCAEYRRGSCSRGDNCEFAHGVFECWLHPSKYRTEACKDGKNCKRKVC 155

Query: 164 FFAHSPRELRLLPPVSNFQGGSCSSPNKRSSTLRSAAAGSN--HGCLFCHCGGAATSSPT 223
           FFAHS R+LRLLP  S  +  S    N   S   S  + S+  H CLFCH      SSPT
Sbjct: 156 FFAHSTRQLRLLPAQS--EPNSPQEINLEKSKFHSPVSPSSLPHCCLFCH--SFTASSPT 215

Query: 224 STLIGMSHLSPP------LSPPLSPVKPQSLNGFSPISRY--NPDPSKLNGVISYKDSMT 283
           STL+GMSHLSPP      LSPPLSP+K +SL+GFSPISRY    +PS L+  +SYKD + 
Sbjct: 216 STLLGMSHLSPPLSPSQSLSPPLSPLKGRSLSGFSPISRYADRLEPSCLSQGMSYKDVLN 275

Query: 284 ELMNSIESMNIDEL-----NAALAASASRQTIPWIDVSSLNTEDQLQFVLSPSTPNVSAA 343
           E+M S++ M + E+     ++ L++  +R  +PW+DV++   E+Q QF+LSPSTPN    
Sbjct: 276 EIMTSLDVMKMSEVSPPPHSSPLSSVKNRTAMPWVDVTTSVNEEQTQFILSPSTPNYPQV 335

Query: 344 SVNFSVNNKGNADNGWA---SASASASDPDLGWVNDLLM 364
             NF  ++  + +  +A   +   S  DPD+GWVN+LLM
Sbjct: 336 PKNFFGSDPSSNEGIFADKVNEGNSCDDPDIGWVNELLM 370

[Close]
BLAST of Cp4.1LG15g08070 vs. TrEMBL
Match: A0A068V4M8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00042287001 PE=4 SV=1)

HSP 1 Score: 376.7 bits (966), Expect = 3.2e-101
Identity = 201/355 (56.62%), Postives = 246/355 (69.30%), Query Frame = 1 

Query: 29  NGEMCSDSPRFSFAVESLLQKFLPFNGEDVAEEDGDPYSSDHFRMYEFKVWRCTRSRSHD 88
           +G+M  DSP+   A E+LLQKFLP+N  D  ++D DPYSSDHFRMYEFKV +CTRSRSHD
Sbjct: 176 SGDMFMDSPK---AEEALLQKFLPYNNID--DDDADPYSSDHFRMYEFKVRKCTRSRSHD 235

Query: 89  WTDCPFAHPGEKARRRDPRRFHYSGTMCPDFRRGGCDRGDGCEFAHGVFECWLHPARYRT 148
           WTDCPFAHPGEKARRRDPRR+HYSGT+C +FRRG C RGD CE+AHGVFECWLHP+RYRT
Sbjct: 236 WTDCPFAHPGEKARRRDPRRYHYSGTVCSEFRRGNCSRGDNCEYAHGVFECWLHPSRYRT 295

Query: 149 EACKDGKNCKRKVCFFAHSPRELRLLPPVSNFQGGSCSSPNKRSSTLRSAAAGSNHGCLF 208
           EACKDGKNCKRKVCFFAHSPR+LR+LP  +N    + S  N      +      NH C++
Sbjct: 296 EACKDGKNCKRKVCFFAHSPRQLRVLP--ANCHETASSPVNSPVEKQQQHHRNVNHCCMY 355

Query: 209 CHCGGAATSSPTSTLIGMSHLSPPLSPPLS-PVKPQSLNGFSPISRYNPDPSKLN----- 268
           CH   +  +SPTSTL+GMSHLSPPLSPPLS P+ P     FSP+SRY    + +      
Sbjct: 356 CH---SVAASPTSTLMGMSHLSPPLSPPLSPPISPAKAAQFSPVSRYKDHFASVEPCGMA 415

Query: 269 -------GVISYKDSMTELMNSIESMNIDELNAALAASASRQTIPWIDVSSLNTEDQLQF 328
                  G +SYKD++ ELM+SIE+M ++E ++  AAS +  ++PWIDV + N +DQ QF
Sbjct: 416 QFGSGGMGGMSYKDALAELMSSIEAMRVNESSSRAAASNNGISLPWIDV-NFNGDDQQQF 475

Query: 329 VLSPSTPNVSAA--------SVNFSVNNKGNADNGWASASASASDPDLGWVNDLL 363
           +LSPSTP+   +        S NF   NK   +NG A        PDL WVNDLL
Sbjct: 476 ILSPSTPSPGTSKFLSRNFPSRNFIEENK-FTENGLAG-------PDLEWVNDLL 511

[Close]
BLAST of Cp4.1LG15g08070 vs. TrEMBL
Match: A0A061E548_THECC (Zinc finger C-x8-C-x5-C-x3-H type family protein, putative OS=Theobroma cacao GN=TCM_008158 PE=4 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 5.6e-98
Identity = 211/378 (55.82%), Postives = 254/378 (67.20%), Query Frame = 1 

Query: 1   MSSVCAEQQKFQFQF-QLPSSCSKILED---INGEMCSDSPRFSFAVESLLQKFLPFNGE 60
           MS+ CAEQ KFQ    QLP    +I      ++     ++       E+ LQ++LP N  
Sbjct: 1   MSTACAEQHKFQPSHPQLPFKDIEIPPRKLLLSHNHFQENATMQIPFEASLQQYLPSNRN 60

Query: 61  DVAEE--DGDPYSSDHFRMYEFKVWRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGT 120
           +  +E  D D Y++DHFRMYEFKV RCTRSRSHDWTDCPFAHP EKARRRDPRRF YS T
Sbjct: 61  NAEDEGNDADRYATDHFRMYEFKVRRCTRSRSHDWTDCPFAHPNEKARRRDPRRFRYSST 120

Query: 121 MCPDFRR-GGCDRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRL 180
           +C DFRR GGC RGD C+FAHGVFECWLHP RYRTEACKDGKNCKRK+CFFAHS RELRL
Sbjct: 121 VCSDFRRGGGCPRGDDCDFAHGVFECWLHPTRYRTEACKDGKNCKRKICFFAHSSRELRL 180

Query: 181 LPPVS--NFQGGSCSSPNKRSSTLRSAAAGSNHGCLFCHCGGAATSSPTSTLIGMSHL-- 240
           LP  S      GSCSS         S    ++H CLFCH   + TSSPTSTL+G+SHL  
Sbjct: 181 LPDGSPKYKNSGSCSS---------SPMNKNDHCCLFCH---SVTSSPTSTLLGLSHLSR 240

Query: 241 SPPLSPPLSPVKPQ-SLNGFSPISRYNPDPSKL-NGVISYKDSMTELMNSIESMNIDELN 300
           SP LSPPLSPVK + SLNGFSP+SRY    SK    ++SYKD+  ELM+S+E+MN  E++
Sbjct: 241 SPSLSPPLSPVKQRASLNGFSPVSRYGDRLSKFGTEMMSYKDAFNELMSSLETMNFCEVS 300

Query: 301 AALA-ASASRQTIPWIDVSSLNTEDQLQFVLSPSTPNVSAASVNFSVNNK-GNADNGWAS 360
           + +A  +     I W+D +S N EDQ QFVLSPS P+ S +   F    + G  +N   +
Sbjct: 301 SPVAGVNNLNANISWLD-ASFNGEDQQQFVLSPSRPSPSESGEYFGATKEIGGYENLNEN 360

Query: 361 ASASASDPDLGWVNDLLM 364
             A+  DPDLGWVN+LLM
Sbjct: 361 GVATDPDPDLGWVNELLM 365

[Close]
BLAST of Cp4.1LG15g08070 vs. TAIR10
Match: AT1G03790.1 (AT1G03790.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 289.7 bits (740), Expect = 2.6e-78
Identity = 174/339 (51.33%), Postives = 213/339 (62.83%), Query Frame = 1 

Query: 61  EDGDPYSSDHFRMYEFKVWRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTMCPDFR 120
           +  DPY+SDHFRM+EFK+ RCTRSRSHDWTDCPFAHPGEKARRRDPRRF YSG +CP+FR
Sbjct: 73  DSDDPYASDHFRMFEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFQYSGEVCPEFR 132

Query: 121 RGG-CDRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLLPPVSN 180
           RGG C RGD CEFAHGVFECWLHP RYRTEACKDGK+CKRKVCFFAHSPR+LR+LPP  N
Sbjct: 133 RGGDCSRGDDCEFAHGVFECWLHPIRYRTEACKDGKHCKRKVCFFAHSPRQLRVLPP-EN 192

Query: 181 FQGGSCSSPNKRSSTLRSAAAGSNHGCLFCHCGGAATSSPTSTLIG-MSHL--SPPLSPP 240
             G S S           + A  N  CLFC      +SSPTSTL+G +SHL  SP LSPP
Sbjct: 193 VSGVSAS----------PSPAAKNPCCLFC------SSSPTSTLLGNLSHLSRSPSLSPP 252

Query: 241 LSPV-KPQSLNGFSPISRYNPDPSKLNGVISYKDSMTELMNSIESMNIDELNAALAASAS 300
           +SP  K  + +     +      +   G ++YKD ++EL+NS++SM++ E  A  A+S+S
Sbjct: 253 MSPANKAAAFSRLRNRAASAVSAAAAAGSMNYKDVLSELVNSLDSMSLAE--ALQASSSS 312

Query: 301 RQTIP-----WIDVSSLNTEDQ------------LQFVLSPSTPN--VSAASVNFSVNN- 360
             T P         SS    +Q            LQF LSPSTP+   ++   NF  ++ 
Sbjct: 313 PVTTPVSAAAAAFASSCGLSNQRLHLQQQQPSSPLQFALSPSTPSYLTNSPQANFFSDDF 372

Query: 361 --KGNADNGWASASA----------SASDPDLGWVNDLL 363
             +    N + + +A          S  DPDLGWVNDLL
Sbjct: 373 TPRRRQMNDFTAMTAVRENTNIEDGSCGDPDLGWVNDLL 392

[Close]
BLAST of Cp4.1LG15g08070 vs. TAIR10
Match: AT5G44260.1 (AT5G44260.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 258.8 bits (660), Expect = 4.9e-69
Identity = 136/240 (56.67%), Postives = 171/240 (71.25%), Query Frame = 1 

Query: 64  DPYSSDHFRMYEFKVWRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTMCPDF-RRG 123
           DPY+ DHFRMYEFK+ RCTRSRSHDWTDCPF+HPGEKARRRDPRRFHY+G +CP+F R G
Sbjct: 54  DPYAGDHFRMYEFKIRRCTRSRSHDWTDCPFSHPGEKARRRDPRRFHYTGEVCPEFSRHG 113

Query: 124 GCDRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLLP--PVSNF 183
            C RGD C FAHGVFECWLHP+RYRTEACKDGK+CKRKVCFFAHSPR+LR+LP  P ++ 
Sbjct: 114 DCSRGDECGFAHGVFECWLHPSRYRTEACKDGKHCKRKVCFFAHSPRQLRVLPPSPENHI 173

Query: 184 QGGSCSSPNKRSSTLRSAAAGSNHGCLFCHCGGAATSSPTSTLIGMSHLSPPLSPPLSPV 243
            GG   SP+   +++ S    +N  CLFC      + SPTSTL+ +S  SP  SPPLSP 
Sbjct: 174 SGGCGGSPSSSPASVLSNK--NNRCCLFC------SHSPTSTLLNLSR-SPSSSPPLSPA 233

Query: 244 KPQSLNGFSPISRYNPDPSKLNGVISYKDSMTELMNSIESMNIDELNAALAASASRQTIP 301
                + FS +SR      +   V++      EL++S++S+++ E  A  A+S+S  T+P
Sbjct: 234 --DKADAFSRLSR------RRTAVLN------ELISSLDSLSLTE--ALAASSSSPVTMP 268

[Close]
BLAST of Cp4.1LG15g08070 vs. TAIR10
Match: AT2G19810.1 (AT2G19810.1 CCCH-type zinc finger family protein)

HSP 1 Score: 221.9 bits (564), Expect = 6.6e-58
Identity = 100/166 (60.24%), Postives = 117/166 (70.48%), Query Frame = 1 

Query: 18  PSSCSKILEDINGEMCSDSPRFSFAVESLLQKFLPFNGEDVAEEDG--------DPYSSD 77
           P S    + DI G     S       E  LQ++LP N  D   +          D Y+ D
Sbjct: 20  PLSEDLTVSDIYGSPDGGSSMMEALAE--LQRYLPSNEPDPDSDPDLSGPDSPIDAYTCD 79

Query: 78  HFRMYEFKVWRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTMCPDFRRGGCDRGDG 137
           HFRMYEFKV RC R RSHDWT+CP+AHPGEKARRRDPR+FHYSGT CP+FR+G C RGD 
Sbjct: 80  HFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPEFRKGCCKRGDA 139

Query: 138 CEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLLP 176
           CEF+HGVFECWLHPARYRT+ CKDG NC+R+VCFFAHSP ++R+LP
Sbjct: 140 CEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPDQIRVLP 183

[Close]
BLAST of Cp4.1LG15g08070 vs. TAIR10
Match: AT4G29190.1 (AT4G29190.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 220.7 bits (561), Expect = 1.5e-57
Identity = 94/136 (69.12%), Postives = 107/136 (78.68%), Query Frame = 1 

Query: 47  LQKFLPFNGEDVA--------EEDGDPYSSDHFRMYEFKVWRCTRSRSHDWTDCPFAHPG 106
           LQ++LP N  D          +   D YS DHFRMY+FKV RC R RSHDWT+CP+AHPG
Sbjct: 48  LQRYLPSNEPDPESYPDLLGPDSPIDAYSCDHFRMYDFKVRRCARGRSHDWTECPYAHPG 107

Query: 107 EKARRRDPRRFHYSGTMCPDFRRGGCDRGDGCEFAHGVFECWLHPARYRTEACKDGKNCK 166
           EKARRRDPR++HYSGT CPDFR+GGC +GD CEFAHGVFECWLHPARYRT+ CKDG NC 
Sbjct: 108 EKARRRDPRKYHYSGTACPDFRKGGCKKGDSCEFAHGVFECWLHPARYRTQPCKDGGNCL 167

Query: 167 RKVCFFAHSPRELRLL 175
           RK+CFFAHSP +LR L
Sbjct: 168 RKICFFAHSPDQLRFL 183

[Close]
BLAST of Cp4.1LG15g08070 vs. TAIR10
Match: AT2G25900.1 (AT2G25900.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 212.2 bits (539), Expect = 5.2e-55
Identity = 100/176 (56.82%), Postives = 119/176 (67.61%), Query Frame = 1 

Query: 64  DPYSSDHFRMYEFKVWRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTMCPDFRRGG 123
           D +SSD FR+YEFK+ RC R RSHDWT+CPFAHPGEKARRRDPR+FHYSGT CP+FR+G 
Sbjct: 84  DSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFHYSGTACPEFRKGS 143

Query: 124 CDRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLLPPVSNFQGG 183
           C RGD CEF+HGVFECWLHP+RYRT+ CKDG +C+R++CFFAH+  +LR+LP   +   G
Sbjct: 144 CRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQLRVLPCSLDPDLG 203

Query: 184 SCSSPNKRSSTLRSAAAGSNHGCLFCHCGGAATSSPTSTLIGMSHLSPPLSPPLSP 240
             S                          G AT SPTS L+  S   P  SPPLSP
Sbjct: 204 FFS--------------------------GLAT-SPTSILVSPSFSPPSESPPLSP 232

[Close]
BLAST of Cp4.1LG15g08070 vs. NCBI nr
Match: gi|449438127|ref|XP_004136841.1| (PREDICTED: zinc finger CCCH domain-containing protein 2 [Cucumis sativus])

HSP 1 Score: 579.3 bits (1492), Expect = 4.6e-162
Identity = 304/390 (77.95%), Postives = 319/390 (81.79%), Query Frame = 1 

Query: 2   SSVCAEQQ-------KFQFQFQLPSSCSKILEDING-------EMCSDSPRFSFAVESLL 61
           SSVCA+ Q        FQ      S  S  L  IN        EM SDSPRFS+AVESLL
Sbjct: 3   SSVCADHQHNKSPFSSFQSSSSSSSCSSSFLHHINLPPTKNHLEMSSDSPRFSYAVESLL 62

Query: 62  QKFLPFNGEDVAEEDGDPYSSDHFRMYEFKVWRCTRSRSHDWTDCPFAHPGEKARRRDPR 121
           QKFLPFNGED  EEDGDPYSSDHFRMYEFKV RCTRSRSHDWTDCPFAHPGEKARRRDPR
Sbjct: 63  QKFLPFNGEDELEEDGDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPR 122

Query: 122 RFHYSGTMCPDFRRGGCDRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHS 181
           RFHYSGTMCP+FRRGGC RGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHS
Sbjct: 123 RFHYSGTMCPEFRRGGCGRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHS 182

Query: 182 PRELRLLPPVSNFQGGSCSSPNKR--SSTLR--SAAAGSNHGCLFCHCGGAA-TSSPTST 241
           PRELRLLPPVSNFQ GSCSSPN +  SS+LR  S A+ SNH CLFCHCGGAA TSSPTST
Sbjct: 183 PRELRLLPPVSNFQTGSCSSPNNKRSSSSLRSPSTASASNHCCLFCHCGGAAVTSSPTST 242

Query: 242 LIGMSHLSPPLSPPLSPVKPQSLNGFSPISRYNPDPSKLNGVISYKDSMTELMNSIESMN 301
           L GMSHLSPP SPP SP KP  +NGFSPISRYNPD SKLNGV+SYKD++TELM+SIESMN
Sbjct: 243 LFGMSHLSPPHSPPHSPGKP--INGFSPISRYNPDQSKLNGVLSYKDALTELMSSIESMN 302

Query: 302 IDELNAALAASAS-----RQTIPWIDVSSLNTEDQLQFVLSPSTPNVSAASVNFSVNNKG 361
           +D+ NA LAA+A+     RQTIPWIDVSSLN EDQLQFVLSPSTPNVS ASV FSV N  
Sbjct: 303 MDDANATLAAAAAAASGPRQTIPWIDVSSLNNEDQLQFVLSPSTPNVSTASVKFSVENNN 362

Query: 362 NADNGW----ASASASASDPDLGWVNDLLM 364
           N  NGW    ASAS SASDPDLGWVNDLLM
Sbjct: 363 N--NGWASAYASASTSASDPDLGWVNDLLM 388

[Close]
BLAST of Cp4.1LG15g08070 vs. NCBI nr
Match: gi|659110543|ref|XP_008455280.1| (PREDICTED: zinc finger CCCH domain-containing protein 2-like [Cucumis melo])

HSP 1 Score: 572.4 bits (1474), Expect = 5.6e-160
Identity = 288/346 (83.24%), Postives = 305/346 (88.15%), Query Frame = 1 

Query: 32  MCSDSPRFSFAVESLLQKFLPFNGEDVAEEDGDPYSSDHFRMYEFKVWRCTRSRSHDWTD 91
           MCSDSPRFSFAVESLLQKFLPFNGED +EEDGDPYSSDHFRMYEFKV RCTRSRSHDWTD
Sbjct: 1   MCSDSPRFSFAVESLLQKFLPFNGEDKSEEDGDPYSSDHFRMYEFKVRRCTRSRSHDWTD 60

Query: 92  CPFAHPGEKARRRDPRRFHYSGTMCPDFRRGGCDRGDGCEFAHGVFECWLHPARYRTEAC 151
           CPFAHPGEKARRRDPRRFHYSGTMCP+FRRGGC RGDGCEFAHGVFECWLHPARYRTEAC
Sbjct: 61  CPFAHPGEKARRRDPRRFHYSGTMCPEFRRGGCGRGDGCEFAHGVFECWLHPARYRTEAC 120

Query: 152 KDGKNCKRKVCFFAHSPRELRLLPPVSNFQGGSCSSPNKR--SSTLRSA--AAGSNHGCL 211
           KDGKNCKRKVCFFAHSPRELRLLPPVSN+Q GSCSSPN +  SS+LRSA  A+ SNH CL
Sbjct: 121 KDGKNCKRKVCFFAHSPRELRLLPPVSNYQSGSCSSPNNKRSSSSLRSASTASASNHCCL 180

Query: 212 FCHCGG-AATSSPTSTLIGMSHLSPPLSPPLSPVKPQSLNGFSPISRYNPDPSKLNGVIS 271
           FCHCGG AATSSPTSTL GMSHLSPP SPP SP KP  +NGFSPISRYNPD SKLNGV+S
Sbjct: 181 FCHCGGAAATSSPTSTLFGMSHLSPPHSPPHSPGKP--INGFSPISRYNPDQSKLNGVLS 240

Query: 272 YKDSMTELMNSIESMNIDELNAALAASAS---------RQTIPWIDVSSLNTEDQLQFVL 331
           YKD++TELM+SIESMN+D+ NA LAA+A+         RQTIPWIDVSSLN EDQLQFVL
Sbjct: 241 YKDALTELMSSIESMNMDDANATLAAAAAAATAAASGPRQTIPWIDVSSLNNEDQLQFVL 300

Query: 332 SPSTPNVSAASVNFSVNNKGNADNGWASASASASDPDLGWVNDLLM 364
           SPSTPNVS ASVNFSV+     +NGW    ASASDPDLGWVNDLLM
Sbjct: 301 SPSTPNVSTASVNFSVDQN---NNGW----ASASDPDLGWVNDLLM 337

[Close]
BLAST of Cp4.1LG15g08070 vs. NCBI nr
Match: gi|1009174943|ref|XP_015868612.1| (PREDICTED: zinc finger CCCH domain-containing protein 2-like isoform X1 [Ziziphus jujuba])

HSP 1 Score: 411.0 bits (1055), Expect = 2.2e-111
Identity = 233/409 (56.97%), Postives = 269/409 (65.77%), Query Frame = 1 

Query: 2   SSVCAEQQKFQFQFQLPSSCSKILEDIN-----------------GEMCSDSPRFSFAVE 61
           SSVC++      Q    S  + +L DI+                  EM S+SPRFS A E
Sbjct: 3   SSVCSDHHHHHHQLFPSSKKTLLLRDIDIPPRKLLLTRRAHQDPAAEMYSNSPRFSSAEE 62

Query: 62  SLLQKFLPFNGEDVAEEDGD---PYSSDHFRMYEFKVWRCTRSRSHDWTDCPFAHPGEKA 121
           +LLQKFLPFN      +D D   PYSSDHFRMYEFK+ RCTRSRSHDWTDCPF HPGEKA
Sbjct: 63  TLLQKFLPFNNSSAENDDDDSDDPYSSDHFRMYEFKIRRCTRSRSHDWTDCPFVHPGEKA 122

Query: 122 RRRDPRRFHYSGTMCPDFRRGGCDRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKV 181
           RRRDPRR HYSGT+CP++RRGGC RGD CEFAHGVFECWLHPARYRTEACKDGKNCKRKV
Sbjct: 123 RRRDPRRHHYSGTVCPEYRRGGCSRGDSCEFAHGVFECWLHPARYRTEACKDGKNCKRKV 182

Query: 182 CFFAHSPRELRLLPPVSNFQGGSCS-SP----NKRSSTL-----RSAAAGSNHGCLFCHC 241
           CFFAH+PR+LR+LPP  + Q  S   SP    NK  S L      +AAAGSNH C+FC C
Sbjct: 183 CFFAHTPRQLRVLPPSLHSQTSSPEISPVGYKNKYLSHLSPTAAAAAAAGSNHCCMFC-C 242

Query: 242 GGAATSSPTSTLIGMSHLSPPLSPPLSPVKPQSLNGFSPISRYNPDPSKLNG------VI 301
             + TSSPTSTL+GM HLSPPLSPPLSP       GFSP+SRY  D     G       +
Sbjct: 243 -HSVTSSPTSTLLGMCHLSPPLSPPLSPAAKH--GGFSPVSRYGLDRMHHGGGGGGGVNV 302

Query: 302 SYKDSMTELMNSIESMNIDELNAALAASASRQTIPWIDVSSLNTEDQLQFVLSPSTPNVS 361
           SYKD +T+LM S+E+MN  E +   +A+   Q +PWIDVS  N + Q QF+LSPSTPN S
Sbjct: 303 SYKDVLTDLMCSLEAMNFSETSPVSSATNYHQNLPWIDVSFNNDDQQQQFILSPSTPNPS 362

Query: 362 ---------AASVNFSVNNKGNADNGWASA--SASASDPDLGWVNDLLM 364
                     +S N S NN  N D+   +   S S SDPDLGWVN+LLM
Sbjct: 363 GSGNFFGGDCSSSNKSFNN-NNIDHKQLNVNNSGSCSDPDLGWVNELLM 406

[Close]
BLAST of Cp4.1LG15g08070 vs. NCBI nr
Match: gi|1000968413|ref|XP_015573898.1| (PREDICTED: zinc finger CCCH domain-containing protein 2 [Ricinus communis])

HSP 1 Score: 396.0 bits (1016), Expect = 7.2e-107
Identity = 230/402 (57.21%), Postives = 269/402 (66.92%), Query Frame = 1 

Query: 1   MSSVCAEQQKFQFQFQL--PSSCSKILEDINGEMCS------DSP-RFSFAVESLLQKFL 60
           MS+VCAEQ K      L  P+   K L+    ++ S       SP   S   ES L KFL
Sbjct: 1   MSTVCAEQHKLYPSHPLFSPNKSFKDLDIPPRKLLSKKTFQESSPDMLSSPFESHLHKFL 60

Query: 61  PFN------------GEDVAEEDGDPYSSDHFRMYEFKVWRCTRSRSHDWTDCPFAHPGE 120
           P N            G D  ++D DPYSSDHFRMYEFKV RCTRSRSHDWTDCPFAHPGE
Sbjct: 61  PCNDLISSDNNHDQRGSD--DQDLDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGE 120

Query: 121 KARRRDPRRFHYSGTMCPDFRRGGCDRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKR 180
           KA RRDPR++HYSG +CP+FRRGGC RGD CEFAHGVFECWLHP+RYRTEACKDGKNCKR
Sbjct: 121 KALRRDPRKYHYSGAICPEFRRGGCSRGDSCEFAHGVFECWLHPSRYRTEACKDGKNCKR 180

Query: 181 KVCFFAHSPRELRLLPPVSNFQGGSCSSPNKRSSTLRSAAAGSNHGCLFCHCGGAATSSP 240
           KVCFFAHSPR+LR+LP VS      C + NK      S        CL CH   +  SSP
Sbjct: 181 KVCFFAHSPRQLRILPEVS------CGAINKYDKHTHSC-------CLACH---SVISSP 240

Query: 241 TSTLIGMSHLSPP----LSPPLSPVKPQSLNGFSPISRYNPDPSKL-NGVISYKDSMTEL 300
           TSTL+GMSH+SPP    LSPPLSPVK +SL+GFSPI RYN   SKL +G++SYKD +TEL
Sbjct: 241 TSTLLGMSHVSPPLSPSLSPPLSPVKQRSLSGFSPIYRYNDRLSKLRSGIVSYKDVLTEL 300

Query: 301 MNSIESMNIDELNAALA-ASAS------RQTIPWIDVSSLNTED--QLQFVLSPSTPNVS 360
           M+S+E+MN  E  AA +  SAS        TIPWID++SLN ED  Q QF+LSPSTPN S
Sbjct: 301 MSSLEAMNFSEAAAATSPVSASTINRHINGTIPWIDIASLNGEDYQQQQFILSPSTPNGS 360

Query: 361 AASVNFSVNNKG----NADNGWASASASASDPDLGWVNDLLM 364
             S + S +NKG    + D    + +   +DPD+GWVN+LLM
Sbjct: 361 FFSGDCSSSNKGFINNDTDPDKINNNGGVADPDIGWVNELLM 384

[Close]
BLAST of Cp4.1LG15g08070 vs. NCBI nr
Match: gi|566211356|ref|XP_006372730.1| (zinc finger family protein [Populus trichocarpa])

HSP 1 Score: 392.5 bits (1007), Expect = 8.0e-106
Identity = 223/397 (56.17%), Postives = 271/397 (68.26%), Query Frame = 1 

Query: 1   MSSVCAEQQKFQFQFQL--PSSCSKILEDINGEMCSDSPRFSFA----VESLLQKFLPFN 60
           MS++CAEQ K     QL  P    + LE + G++ +             E+ LQ+FLP+N
Sbjct: 1   MSTICAEQHKPYTPHQLLSPKRPFRDLEILPGKLLTKKTHQETLDMSPYETNLQRFLPYN 60

Query: 61  ---GEDVAEEDGDPYSSDHFRMYEFKVWRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHY 120
               E V + + DPYSSDHFRMYEFKV RCTRSRSHDWTDCPFAHPGEKARRRDPRRFHY
Sbjct: 61  DYSNEKVLDGELDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHY 120

Query: 121 SGTMCPDFRRGGCDRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPREL 180
           SGT+CP+F+RGGC RG+ CEF+HGVFECWLHP+RYRTEACKDGKNCKRKVCFFAHSPR+L
Sbjct: 121 SGTVCPEFKRGGCSRGENCEFSHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSPRQL 180

Query: 181 RLLPPVSNFQGGSCSSPNKRSSTLRSAAAGSNHG--CLFCHCGGAATSSPTSTLIGMSHL 240
           R+LP VS+           R+ +L S  +  NH   C+ CH   + TSSPTSTL+GMSH+
Sbjct: 181 RILPEVSS-----------RNKSLASPCSSLNHSHCCVVCH---SMTSSPTSTLLGMSHM 240

Query: 241 SPP----LSPPLSPVKPQSLNGFSPISRYNPDPSKLN-GVISYKDSMTELMNSIESMNID 300
           SPP    LSPPLSPVK QSL+GFSPISRYN   SK   GV+SYKD ++ELM+S+E+MN +
Sbjct: 241 SPPLSPSLSPPLSPVKHQSLSGFSPISRYNETLSKFRAGVVSYKDVLSELMSSLEAMNFN 300

Query: 301 E---LNAALAASAS-----RQTIPW-IDVSSLNTEDQLQFVLSPSTPNVSAASVN----- 360
           E   +++ ++ S +       T PW IDV S + EDQ QF+LSPSTP  S+   N     
Sbjct: 301 EGASVSSPMSLSTNHNRNVNSTTPWNIDV-SFSGEDQPQFILSPSTPTPSSKFFNGDCSS 360

Query: 361 ---FSVNNKGNADNGWASAS-ASASDPDLGWVNDLLM 364
                V++K N  N       A  SDPDLGWVN+LLM
Sbjct: 361 NKGLFVDDKINDHNNIGDGGLACTSDPDLGWVNELLM 382

The following BLAST results are available for this feature:
BLAST of Cp4.1LG15g08070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
C3H2_ARATH4.6e-7751.33Zinc finger CCCH domain-containing protein 2 OS=Arabidopsis thaliana GN=At1g0379... [more]
C3H61_ARATH8.6e-6856.67Zinc finger CCCH domain-containing protein 61 OS=Arabidopsis thaliana GN=At5g442... [more]
C3H2_ORYSJ1.6e-5856.67Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica GN=... [more]
C3H20_ARATH1.2e-5660.24Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana GN=At2g198... [more]
C3H49_ARATH2.6e-5669.12Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana GN=At4g291... [more]
BLAST of Cp4.1LG15g08070 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K2E3_CUCSA3.2e-16277.95Uncharacterized protein OS=Cucumis sativus GN=Csa_7G049250 PE=4 SV=1[more]
U5FMC6_POPTR5.6e-10656.17Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0017s04510g PE=4 SV=1[more]
A0A059DH66_EUCGR1.4e-10158.11Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01839 PE=4 SV=1[more]
A0A068V4M8_COFCA3.2e-10156.62Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00042287001 PE=4 SV=1[more]
A0A061E548_THECC5.6e-9855.82Zinc finger C-x8-C-x5-C-x3-H type family protein, putative OS=Theobroma cacao GN... [more]
BLAST of Cp4.1LG15g08070 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G03790.12.6e-7851.33 Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
AT5G44260.14.9e-6956.67 Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
AT2G19810.16.6e-5860.24 CCCH-type zinc finger family protein[more]
AT4G29190.11.5e-5769.12 Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
AT2G25900.15.2e-5556.82 Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
BLAST of Cp4.1LG15g08070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449438127|ref|XP_004136841.1|4.6e-16277.95PREDICTED: zinc finger CCCH domain-containing protein 2 [Cucumis sativus][more]
gi|659110543|ref|XP_008455280.1|5.6e-16083.24PREDICTED: zinc finger CCCH domain-containing protein 2-like [Cucumis melo][more]
gi|1009174943|ref|XP_015868612.1|2.2e-11156.97PREDICTED: zinc finger CCCH domain-containing protein 2-like isoform X1 [Ziziphu... [more]
gi|1000968413|ref|XP_015573898.1|7.2e-10757.21PREDICTED: zinc finger CCCH domain-containing protein 2 [Ricinus communis][more]
gi|566211356|ref|XP_006372730.1|8.0e-10656.17zinc finger family protein [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g08070.1Cp4.1LG15g08070.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeGENE3DG3DSA:4.10.1000.10coord: 142..173
score: 1.3E-4coord: 114..137
score: 7.
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 110..136
score: 0.031coord: 145..168
score:
IPR000571Zinc finger, CCCH-typePROFILEPS50103ZF_C3H1coord: 111..137
score: 12.577coord: 145..169
score: 6
IPR000571Zinc finger, CCCH-typeunknownSSF90229CCCH zinc fingercoord: 109..139
score: 5.1
NoneNo IPR availablePANTHERPTHR14493UNCHARACTERIZEDcoord: 44..314
score: 1.3E
NoneNo IPR availablePANTHERPTHR14493:SF53ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2-RELATEDcoord: 44..314
score: 1.3E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG15g08070Cucsa.195640Cucumber (Gy14) v1cgycpeB0551
Cp4.1LG15g08070CmaCh11G019120Cucurbita maxima (Rimu)cmacpeB121
Cp4.1LG15g08070CmaCh19G009950Cucurbita maxima (Rimu)cmacpeB522
Cp4.1LG15g08070CmoCh19G010360Cucurbita moschata (Rifu)cmocpeB481
Cp4.1LG15g08070CmoCh11G019940Cucurbita moschata (Rifu)cmocpeB097
Cp4.1LG15g08070Cla002235Watermelon (97103) v1cpewmB254
Cp4.1LG15g08070Csa7G049250Cucumber (Chinese Long) v2cpecuB262
Cp4.1LG15g08070MELO3C018709Melon (DHL92) v3.5.1cpemeB218
Cp4.1LG15g08070ClCG07G002530Watermelon (Charleston Gray)cpewcgB241
Cp4.1LG15g08070CSPI07G04910Wild cucumber (PI 183967)cpecpiB263
Cp4.1LG15g08070Lsi11G017050Bottle gourd (USVL1VR-Ls)cpelsiB200
Cp4.1LG15g08070MELO3C018709.2Melon (DHL92) v3.6.1cpemedB257
Cp4.1LG15g08070CsaV3_7G005830Cucumber (Chinese Long) v3cpecucB0327
Cp4.1LG15g08070Bhi05G001686Wax gourdcpewgoB0332
Cp4.1LG15g08070CsGy7G004460Cucumber (Gy14) v2cgybcpeB915
Cp4.1LG15g08070Carg19245Silver-seed gourdcarcpeB1220
Cp4.1LG15g08070Carg19154Silver-seed gourdcarcpeB1014
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG15g08070Cp4.1LG04g02750Cucurbita pepo (Zucchini)cpecpeB271
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG15g08070Cucurbita pepo (Zucchini)cpecpeB256
Cp4.1LG15g08070Cucurbita pepo (Zucchini)cpecpeB267
Cp4.1LG15g08070Cucurbita maxima (Rimu)cmacpeB115
Cp4.1LG15g08070Cucurbita maxima (Rimu)cmacpeB558
Cp4.1LG15g08070Cucurbita moschata (Rifu)cmocpeB093
Cp4.1LG15g08070Cucurbita moschata (Rifu)cmocpeB512
Cp4.1LG15g08070Wild cucumber (PI 183967)cpecpiB257
Cp4.1LG15g08070Cucumber (Chinese Long) v2cpecuB257
Cp4.1LG15g08070Bottle gourd (USVL1VR-Ls)cpelsiB199
Cp4.1LG15g08070Watermelon (Charleston Gray)cpewcgB230
Cp4.1LG15g08070Watermelon (Charleston Gray)cpewcgB244
Cp4.1LG15g08070Watermelon (97103) v1cpewmB265
Cp4.1LG15g08070Cucumber (Gy14) v2cgybcpeB910
Cp4.1LG15g08070Silver-seed gourdcarcpeB0578
Cp4.1LG15g08070Silver-seed gourdcarcpeB1013
Cp4.1LG15g08070Cucumber (Chinese Long) v3cpecucB0322
Cp4.1LG15g08070Wax gourdcpewgoB0318
Cp4.1LG15g08070Wax gourdcpewgoB0339