Cp4.1LG15g03480 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG15g03480
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionGlycine cleavage system h protein
LocationCp4.1LG15 : 4719565 .. 4722725 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGGCCATAACTCTTCAGATGATGATATGGAAGAAAAGAAAAAAAAGGAGCAAAAAGCAGTTTTTAGATGAGGCAGTCACTGCCCACCATCCATCGAAGATAAAGCAATGTCATCGTCTTTTAATCTTTGCTGGTAGCAGAGGCAGAGCAAAACAGAGGAGCAAGAAGAAGAAAACAGAGCAAATTAAACAAAGAAAACTATGGCACTTAGAATGTGGGCTTCTTCTACTGCTAATGCACTCAGACTTTCATCTGCATCTAAAACCCATCTCTCTTCTCCATTCTCTCTCTCCAGATGCTTTTCCACCGGTAATTTTTGCTCTTTTCTTCTTTGCCTGCAAACTGTTTGTGGAAATGCCTGTATGAAGTTGGATTTTGTTTTTTTTGCTGTTGGATCTCGTTTCCGTTCTGTAGTGTTGTTTGGTTGTTGAGTATGTTTAATTTGTTATCTGGGTATGATAAAAGAGGGGATTTTTCTGTTCTTAGTTGAATTTAAAGTATGTTGGTTGGGTTTGCAGTTTTGGATGGACTGAAGTATGCTTCTTCTCATGAGTGGGTGAAGCATGAGGGTGAGGTTGCTACTGTTGGCATCACTGACCATGCTCAGGTGCTTTCTCTTTTTTCCATCACTGAACGTCCATTAATGACGATCATCCTTTAAATTTTGTCTAATAGGTTTATGTTGTTAACTCCACTACTTTAATGCTGACATGATATGCTTTTACTATGAGGGTTGCATTGGTAATAGGTCAAATAATACACAATTTGTGTGAGATTTCACCACGGTTGGGGAGGAGAACGAAGCATTTTTTATAAAGGTGTGGAGACGGTCACGAGGCGGTGTGCTAGTAAGGACGCTGGGCTCCGAAGGGGGTGGATTGGAGAAGGGAACGAGTGTCAGCGAGGACGCTAGACCCCGAAGGGGAGTGGATTGTAAGATCCCACGTCGGTTGGGGAGGAGAACGAATCATTGTTTATAAGGGTGTGGAAACCTCCCCTAACAGACATGTTTTAAAAACCTTAAAGGGAGACCTGAGAGGAAAAGCCCAAAGAGAACAATATCTGCTAGCGGTGGACTTTGGATCTTACTATTAGCGTGTCTTGTTATCGTTAGACGTGTTAGTTGTTGGACCTTATTAGAACAAGATTGAAAAATTTGAGACCTATTAGAAACTTTCTCAAGACTAAATAGATACAATCCTAAAAGATTATGCCAGAGGAACTAAGCTTCTAATTGTATGTAAATTTTATTTGTGAGGTCCCAAATCGGTTGGAGAGGAGAACGAAGCATTCTTTATAAGGGTGTAGAAACTTCTCCCGCTGGGCTCCGAAGGGGGGTGGATTGCGAGATCCCACATCGGTTGGGGAGGTGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAAATACGTTTTAAAAACCTTGAAGGCAACCCCGAAAAGGAAAGCCGAAAAAGGACAATATCTACTGACAGGGGCTTGAGCCGTTACATTATTACTTGGGATGATGTTTAGATAAGAAATCTTGATAGTTACCATTCCTTTTGCTGCTACACACCCATGGAAACTGATTCAATCTTCTATTTTAGTAACTTTTACATTAATCCATTCTAGAAATTATGCATTTATCTTGATATTCAAACATGGGTTGGAAGCGTTTTGTTTGATGCATTTTCACAGGACCATCTAGGAGAAGTGGTGTTTGTGGATCTGCCAGAATCAGGTGGTTCAGTTTCTCAAGGTAAGAGCTTTGGAGCAGTGGAAAGTGTCAAAGCAACAAGTGATATCAACTCCCCAATCTCTGGTGAAATTGTTGAAGTTAACCCACAGCTTAAGGATTCTCCTGGTTTGGTAATTCCGAATCCCAAACTCTTTTTGTCAATTCTTTGGACTTTGCATTTGATCGGTTCGATTCTTAGATACTCGTGTTTCATTTTGGTTCATGTGCTTCTTTCGACGGTACTTAATCTAGTCTTTGTACGTCTGTTATTGTACAACTGGATATTTAACATCGGGATTAGGTTATTACATTCATAAAATTATAGGTTAGGAATCACGAATCTCCACGGTGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGTTTTCGGGCTTCCCCAAAAGGCCTCGTACCAATGGAGATGTATTCCTTACTTATAAACCCACAATTATTCCCTAAATTAGCCAATGTGAGACTCCCTCCCAACAATTCTCAACAATCCTCCCCTCGAACAAAGTACACTATAAAGCCTCCCCTGAGGCCTATGGAGCCCTCGAACAAACAGTCTCCTCTTAATCAAGGCTCGACTTCTTTTTTCTGGAGTCCTCGAACAAAGCACCCTTTGTTGTACTTTGTTTGACACTTGAGTCACTTTTGACTACACCCCTTCGAGGCTCACAACTTCTTTGTTCGATATTTGAGGATTCTATTGACATGGCTAAGTAAAGGGCATAGCTCTGATACCATGTTAGGAATCATGAACCTCCACAACAGTATGATATTGTCCACTTTGAGCATAAGCTCTCGTGGTTTTGTTTTTTGGCTTCCCCAAAAGGTCTCATACCAATGGAGATGTATTCCTTATTTATAAACTCATGATCGCTCCCAACAATCCTCAACATTACAGAGACTAAAACGGACAGAAAAAATGTAGAAATGGTGATTTTAGCGTAAAGTTCGTATAGTATTGATTTGTTTACTTCCATGTTCATGAAATGAAGATCAATTCAAGTCCATATGAAGGGGGATGGATGATAAAAGTGAAGCCAAGCAATCCAGCTGAATTGGATTCGTTGTTTGGTCCAAAGGAATATACAAAGCATTGTGAGGAAGAAGATGCAGCCCACTAGAGCTGATGAGCAACAAGAGGTTAAGTTAATTCCTTTTCAAGCTGCTTGAATCATTGACATATCAGAAGCTATTTCTTGTGAGTTGAAATGTGTCCAAGCATCTGAACTACATTCATGTTCTTCAATGTTTATCCCACTTGCAATTACTTGCGTTTCTATTCCATAAATTTAGTTATTAGTTCTTGAATTTGCTGAATTTTATTGAATTAATAAGCCTTCCATCTCTAAACCCTTTAACAAATCGACCCCTCGTTTGTTTCATCGAATTGGTCATTTTGAGCCTCGTTATTTATCTGGA

mRNA sequence

CAGGCCATAACTCTTCAGATGATGATATGGAAGAAAAGAAAAAAAAGGAGCAAAAAGCAGTTTTTAGATGAGGCAGTCACTGCCCACCATCCATCGAAGATAAAGCAATGTCATCGTCTTTTAATCTTTGCTGGTAGCAGAGGCAGAGCAAAACAGAGGAGCAAGAAGAAGAAAACAGAGCAAATTAAACAAAGAAAACTATGGCACTTAGAATGTGGGCTTCTTCTACTGCTAATGCACTCAGACTTTCATCTGCATCTAAAACCCATCTCTCTTCTCCATTCTCTCTCTCCAGATGCTTTTCCACCGTTTTGGATGGACTGAAGTATGCTTCTTCTCATGAGTGGGTGAAGCATGAGGGTGAGGTTGCTACTGTTGGCATCACTGACCATGCTCAGGACCATCTAGGAGAAGTGGTGTTTGTGGATCTGCCAGAATCAGGTGGTTCAGTTTCTCAAGGTAAGAGCTTTGGAGCAGTGGAAAGTGTCAAAGCAACAAGTGATATCAACTCCCCAATCTCTGGTGAAATTGTTGAAGTTAACCCACAGCTTAAGGATTCTCCTGGTTTGATCAATTCAAGTCCATATGAAGGGGGATGGATGATAAAAGTGAAGCCAAGCAATCCAGCTGAATTGGATTCGTTGTTTGGTCCAAAGGAATATACAAAGCATTGTGAGGAAGAAGATGCAGCCCACTAGAGCTGATGAGCAACAAGAGGTTAAGTTAATTCCTTTTCAAGCTGCTTGAATCATTGACATATCAGAAGCTATTTCTTGTGAGTTGAAATGTGTCCAAGCATCTGAACTACATTCATGTTCTTCAATGTTTATCCCACTTGCAATTACTTGCGTTTCTATTCCATAAATTTAGTTATTAGTTCTTGAATTTGCTGAATTTTATTGAATTAATAAGCCTTCCATCTCTAAACCCTTTAACAAATCGACCCCTCGTTTGTTTCATCGAATTGGTCATTTTGAGCCTCGTTATTTATCTGGA

Coding sequence (CDS)

ATGGCACTTAGAATGTGGGCTTCTTCTACTGCTAATGCACTCAGACTTTCATCTGCATCTAAAACCCATCTCTCTTCTCCATTCTCTCTCTCCAGATGCTTTTCCACCGTTTTGGATGGACTGAAGTATGCTTCTTCTCATGAGTGGGTGAAGCATGAGGGTGAGGTTGCTACTGTTGGCATCACTGACCATGCTCAGGACCATCTAGGAGAAGTGGTGTTTGTGGATCTGCCAGAATCAGGTGGTTCAGTTTCTCAAGGTAAGAGCTTTGGAGCAGTGGAAAGTGTCAAAGCAACAAGTGATATCAACTCCCCAATCTCTGGTGAAATTGTTGAAGTTAACCCACAGCTTAAGGATTCTCCTGGTTTGATCAATTCAAGTCCATATGAAGGGGGATGGATGATAAAAGTGAAGCCAAGCAATCCAGCTGAATTGGATTCGTTGTTTGGTCCAAAGGAATATACAAAGCATTGTGAGGAAGAAGATGCAGCCCACTAG

Protein sequence

MALRMWASSTANALRLSSASKTHLSSPFSLSRCFSTVLDGLKYASSHEWVKHEGEVATVGITDHAQDHLGEVVFVDLPESGGSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKDSPGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKHCEEEDAAH
Homology
[Close]
BLAST of Cp4.1LG15g03480 vs. Swiss-Prot
Match: GCSH_FLAAN (Glycine cleavage system H protein, mitochondrial OS=Flaveria anomala GN=GDCSH PE=2 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 4.5e-72
Identity = 136/165 (82.42%), Postives = 149/165 (90.30%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSASKTHLSSPFSLSRCFSTVLDGLKYASSHEWVKHEGEVATVG 60
           MALRMWASSTANALRLSSA++ H S    LSRCFS+VLDGLKYA+SHEWVKHEG VAT+G
Sbjct: 1   MALRMWASSTANALRLSSATRPHFSP---LSRCFSSVLDGLKYANSHEWVKHEGSVATIG 60

Query: 61  ITDHAQDHLGEVVFVDLPESGGSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKDS 120
           ITDHAQDHLGEVVFVDLPE+GGSV++   FGAVESVKATSD+NSPISGEIVEVN +L ++
Sbjct: 61  ITDHAQDHLGEVVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSET 120

Query: 121 PGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKHCEEEDAAH 166
           PGLINSSPYE GWMIKVKPSNP+ELDSL G KEYTK CEEEDAAH
Sbjct: 121 PGLINSSPYEDGWMIKVKPSNPSELDSLMGAKEYTKFCEEEDAAH 162

[Close]
BLAST of Cp4.1LG15g03480 vs. Swiss-Prot
Match: GCSH_FLAPR (Glycine cleavage system H protein, mitochondrial OS=Flaveria pringlei GN=GDCSH PE=2 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 2.9e-71
Identity = 134/165 (81.21%), Postives = 149/165 (90.30%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSASKTHLSSPFSLSRCFSTVLDGLKYASSHEWVKHEGEVATVG 60
           MALR+WASSTANALRLSSA++ H S    LSRCFS+VLDGLKYA+SHEWVKHEG VAT+G
Sbjct: 1   MALRIWASSTANALRLSSATRPHFSP---LSRCFSSVLDGLKYANSHEWVKHEGSVATIG 60

Query: 61  ITDHAQDHLGEVVFVDLPESGGSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKDS 120
           ITDHAQDHLGEVVFVDLPE+GGSV++   FGAVESVKATSD+NSPISGEIVEVN +L ++
Sbjct: 61  ITDHAQDHLGEVVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSET 120

Query: 121 PGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKHCEEEDAAH 166
           PGLINSSPYE GWMIKVKPSNP+ELDSL G KEYTK CEEED+AH
Sbjct: 121 PGLINSSPYEDGWMIKVKPSNPSELDSLMGAKEYTKFCEEEDSAH 162

[Close]
BLAST of Cp4.1LG15g03480 vs. Swiss-Prot
Match: GCSH_PEA (Glycine cleavage system H protein, mitochondrial OS=Pisum sativum GN=GDCSH PE=1 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 8.4e-71
Identity = 131/165 (79.39%), Postives = 146/165 (88.48%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSASKTHLSSPFSLSRCFSTVLDGLKYASSHEWVKHEGEVATVG 60
           MALRMWASSTANAL+LSS+S+ HLS  FS+SRCFS VLDGLKYA SHEWVKHEG VAT+G
Sbjct: 1   MALRMWASSTANALKLSSSSRLHLSPTFSISRCFSNVLDGLKYAPSHEWVKHEGSVATIG 60

Query: 61  ITDHAQDHLGEVVFVDLPESGGSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKDS 120
           ITDHAQDHLGEVVFV+LPE G SV++GK FGAVESVKATSD+NSPISGE++EVN  L   
Sbjct: 61  ITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGK 120

Query: 121 PGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKHCEEEDAAH 166
           PGLINSSPYE GWMIK+KP++P EL+SL G KEYTK CEEEDAAH
Sbjct: 121 PGLINSSPYEDGWMIKIKPTSPDELESLLGAKEYTKFCEEEDAAH 165

[Close]
BLAST of Cp4.1LG15g03480 vs. Swiss-Prot
Match: GCSH3_ARATH (Glycine cleavage system H protein 3, mitochondrial OS=Arabidopsis thaliana GN=GDH3 PE=1 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 8.4e-71
Identity = 134/166 (80.72%), Postives = 152/166 (91.57%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSS-ASKTHLSSPFSLSRCFSTVLDGLKYASSHEWVKHEGEVATV 60
           MALRMWASSTANAL+LSS ASK+HL   FS+SRCFS+VL+GLKYA+SHEWVKHEG VAT+
Sbjct: 1   MALRMWASSTANALKLSSSASKSHLLPAFSISRCFSSVLEGLKYANSHEWVKHEGSVATI 60

Query: 61  GITDHAQDHLGEVVFVDLPESGGSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKD 120
           GITDHAQDHLGEVVFV+LPE+  SVS+ KSFGAVESVKATS+I SPISGE++EVN +L +
Sbjct: 61  GITDHAQDHLGEVVFVELPEANSSVSKEKSFGAVESVKATSEILSPISGEVIEVNTKLTE 120

Query: 121 SPGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKHCEEEDAAH 166
           SPGLINSSPYE GWMIKVKPS+PAEL++L GPKEYTK CEEEDAAH
Sbjct: 121 SPGLINSSPYEDGWMIKVKPSSPAELEALMGPKEYTKFCEEEDAAH 166

[Close]
BLAST of Cp4.1LG15g03480 vs. Swiss-Prot
Match: GCSH1_ARATH (Glycine cleavage system H protein 1, mitochondrial OS=Arabidopsis thaliana GN=GDH1 PE=1 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 2.5e-70
Identity = 137/166 (82.53%), Postives = 151/166 (90.96%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSA-SKTHLSSPFSLSRCFSTVLDGLKYASSHEWVKHEGEVATV 60
           MALRMWASSTANAL+LSS+ SK+HL SPFS SRCFSTVL+GLKYA+SHEWVKHEG VAT+
Sbjct: 1   MALRMWASSTANALKLSSSVSKSHL-SPFSFSRCFSTVLEGLKYANSHEWVKHEGSVATI 60

Query: 61  GITDHAQDHLGEVVFVDLPESGGSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKD 120
           GIT HAQDHLGEVVFV+LPE   SVS+ KSFGAVESVKATS+I SPISGEI+EVN +L +
Sbjct: 61  GITAHAQDHLGEVVFVELPEDNTSVSKEKSFGAVESVKATSEILSPISGEIIEVNKKLTE 120

Query: 121 SPGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKHCEEEDAAH 166
           SPGLINSSPYE GWMIKVKPS+PAEL+SL GPKEYTK CEEEDAAH
Sbjct: 121 SPGLINSSPYEDGWMIKVKPSSPAELESLMGPKEYTKFCEEEDAAH 165

[Close]
BLAST of Cp4.1LG15g03480 vs. TrEMBL
Match: A0A0A0LI67_CUCSA (Glycine cleavage system h protein OS=Cucumis sativus GN=Csa_3G903520 PE=3 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 4.8e-81
Identity = 155/165 (93.94%), Postives = 158/165 (95.76%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSASKTHLSSPFSLSRCFSTVLDGLKYASSHEWVKHEGEVATVG 60
           MALRMWASSTANAL+LSS+SKTHLS  FSLSRCFSTVLDGLKYASSHEWVKHEG VATVG
Sbjct: 1   MALRMWASSTANALKLSSSSKTHLSPSFSLSRCFSTVLDGLKYASSHEWVKHEGSVATVG 60

Query: 61  ITDHAQDHLGEVVFVDLPESGGSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKDS 120
           ITDHAQDHLGEVVFVDLPESG SVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLK+S
Sbjct: 61  ITDHAQDHLGEVVFVDLPESGSSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKES 120

Query: 121 PGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKHCEEEDAAH 166
           PGLINSSPYEGGWMIKVKPSNP ELDSL GPKEYTK CEEEDAAH
Sbjct: 121 PGLINSSPYEGGWMIKVKPSNPGELDSLLGPKEYTKFCEEEDAAH 165

[Close]
BLAST of Cp4.1LG15g03480 vs. TrEMBL
Match: A0A061GAI7_THECC (Single hybrid motif superfamily protein OS=Theobroma cacao GN=TCM_015756 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 5.7e-74
Identity = 139/165 (84.24%), Postives = 153/165 (92.73%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSASKTHLSSPFSLSRCFSTVLDGLKYASSHEWVKHEGEVATVG 60
           MALRMWASSTANAL++S ASK HLS  FSLSRCFSTVLDGLKYA+SHEWVKHEG VAT+G
Sbjct: 1   MALRMWASSTANALKISCASKAHLSPAFSLSRCFSTVLDGLKYANSHEWVKHEGSVATIG 60

Query: 61  ITDHAQDHLGEVVFVDLPESGGSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKDS 120
           ITDHAQDHLGEVVFVDLPE GGSVSQGK FGAVESVKATSD+NSPISGE+VEVN +L ++
Sbjct: 61  ITDHAQDHLGEVVFVDLPEPGGSVSQGKGFGAVESVKATSDVNSPISGEVVEVNSKLTEA 120

Query: 121 PGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKHCEEEDAAH 166
           PGLINSSPYE GW+IKVKPS+P+EL+SL GPKEYTK CEEEDA+H
Sbjct: 121 PGLINSSPYEDGWIIKVKPSSPSELESLMGPKEYTKFCEEEDASH 165

[Close]
BLAST of Cp4.1LG15g03480 vs. TrEMBL
Match: A5BA00_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038357 PE=3 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 2.2e-73
Identity = 139/165 (84.24%), Postives = 151/165 (91.52%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSASKTHLSSPFSLSRCFSTVLDGLKYASSHEWVKHEGEVATVG 60
           MALRMWASSTANALR+S ASK H+S  FSLSRCFS+VLDGLKYA+SHEWVKHEG VAT+G
Sbjct: 1   MALRMWASSTANALRVSCASKAHVSPAFSLSRCFSSVLDGLKYATSHEWVKHEGSVATIG 60

Query: 61  ITDHAQDHLGEVVFVDLPESGGSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKDS 120
           ITDHAQDHLGEVVFV+LPE GGSVS+G  FGAVESVKATSDINSPISGE+VEVN +L +S
Sbjct: 61  ITDHAQDHLGEVVFVELPEPGGSVSKGNGFGAVESVKATSDINSPISGEVVEVNSKLSES 120

Query: 121 PGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKHCEEEDAAH 166
           PGLINSSPYE GWMIKVKP NP+EL+SL GPKEYTK CEEEDAAH
Sbjct: 121 PGLINSSPYEDGWMIKVKPGNPSELESLMGPKEYTKFCEEEDAAH 165

[Close]
BLAST of Cp4.1LG15g03480 vs. TrEMBL
Match: D7TTY4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0012g01120 PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 3.7e-73
Identity = 137/165 (83.03%), Postives = 152/165 (92.12%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSASKTHLSSPFSLSRCFSTVLDGLKYASSHEWVKHEGEVATVG 60
           MALRMWASSTANALR+S ASK H+S  FSLSRCFS+VLDGLKYA+SHEWVKHEG VAT+G
Sbjct: 1   MALRMWASSTANALRVSCASKAHVSPAFSLSRCFSSVLDGLKYATSHEWVKHEGSVATIG 60

Query: 61  ITDHAQDHLGEVVFVDLPESGGSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKDS 120
           ITDHAQDHLGEVVFV++PE GGSVS+G  FGAVESVKATSD+NSPISGE+VEVN +L ++
Sbjct: 61  ITDHAQDHLGEVVFVEIPEPGGSVSKGNGFGAVESVKATSDVNSPISGEVVEVNSKLSEA 120

Query: 121 PGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKHCEEEDAAH 166
           PGLINSSPYE GWMIKVKPSNP+EL+SL GPKEYTK CEEEDAAH
Sbjct: 121 PGLINSSPYEDGWMIKVKPSNPSELESLMGPKEYTKFCEEEDAAH 165

[Close]
BLAST of Cp4.1LG15g03480 vs. TrEMBL
Match: A0A0B0NQG7_GOSAR (Glycine cleavage system H, mitochondrial OS=Gossypium arboreum GN=F383_19868 PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 3.1e-72
Identity = 136/165 (82.42%), Postives = 153/165 (92.73%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSASKTHLSSPFSLSRCFSTVLDGLKYASSHEWVKHEGEVATVG 60
           MALRMWASSTANAL++S +SK ++S  FSLSRCFSTVLDGLKYA+SHEWVKHEG VAT+G
Sbjct: 1   MALRMWASSTANALKISCSSKPNVSLAFSLSRCFSTVLDGLKYANSHEWVKHEGPVATIG 60

Query: 61  ITDHAQDHLGEVVFVDLPESGGSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKDS 120
           ITDHAQDHLGEVVFV+LPE GGSVSQGK FGAVESVKATSD+NSPISGE+VEVN +L ++
Sbjct: 61  ITDHAQDHLGEVVFVELPEPGGSVSQGKGFGAVESVKATSDVNSPISGEVVEVNSKLSET 120

Query: 121 PGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKHCEEEDAAH 166
           PGLINSSPYE GWMIKVKPS+P+EL+SL GPKEYTK CEEEDA+H
Sbjct: 121 PGLINSSPYEDGWMIKVKPSSPSELESLMGPKEYTKFCEEEDASH 165

[Close]
BLAST of Cp4.1LG15g03480 vs. TAIR10
Match: AT1G32470.1 (AT1G32470.1 Single hybrid motif superfamily protein)

HSP 1 Score: 267.7 bits (683), Expect = 4.8e-72
Identity = 134/166 (80.72%), Postives = 152/166 (91.57%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSS-ASKTHLSSPFSLSRCFSTVLDGLKYASSHEWVKHEGEVATV 60
           MALRMWASSTANAL+LSS ASK+HL   FS+SRCFS+VL+GLKYA+SHEWVKHEG VAT+
Sbjct: 1   MALRMWASSTANALKLSSSASKSHLLPAFSISRCFSSVLEGLKYANSHEWVKHEGSVATI 60

Query: 61  GITDHAQDHLGEVVFVDLPESGGSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKD 120
           GITDHAQDHLGEVVFV+LPE+  SVS+ KSFGAVESVKATS+I SPISGE++EVN +L +
Sbjct: 61  GITDHAQDHLGEVVFVELPEANSSVSKEKSFGAVESVKATSEILSPISGEVIEVNTKLTE 120

Query: 121 SPGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKHCEEEDAAH 166
           SPGLINSSPYE GWMIKVKPS+PAEL++L GPKEYTK CEEEDAAH
Sbjct: 121 SPGLINSSPYEDGWMIKVKPSSPAELEALMGPKEYTKFCEEEDAAH 166

[Close]
BLAST of Cp4.1LG15g03480 vs. TAIR10
Match: AT2G35370.1 (AT2G35370.1 glycine decarboxylase complex H)

HSP 1 Score: 266.2 bits (679), Expect = 1.4e-71
Identity = 137/166 (82.53%), Postives = 151/166 (90.96%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSA-SKTHLSSPFSLSRCFSTVLDGLKYASSHEWVKHEGEVATV 60
           MALRMWASSTANAL+LSS+ SK+HL SPFS SRCFSTVL+GLKYA+SHEWVKHEG VAT+
Sbjct: 1   MALRMWASSTANALKLSSSVSKSHL-SPFSFSRCFSTVLEGLKYANSHEWVKHEGSVATI 60

Query: 61  GITDHAQDHLGEVVFVDLPESGGSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKD 120
           GIT HAQDHLGEVVFV+LPE   SVS+ KSFGAVESVKATS+I SPISGEI+EVN +L +
Sbjct: 61  GITAHAQDHLGEVVFVELPEDNTSVSKEKSFGAVESVKATSEILSPISGEIIEVNKKLTE 120

Query: 121 SPGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKHCEEEDAAH 166
           SPGLINSSPYE GWMIKVKPS+PAEL+SL GPKEYTK CEEEDAAH
Sbjct: 121 SPGLINSSPYEDGWMIKVKPSSPAELESLMGPKEYTKFCEEEDAAH 165

[Close]
BLAST of Cp4.1LG15g03480 vs. TAIR10
Match: AT2G35120.1 (AT2G35120.1 Single hybrid motif superfamily protein)

HSP 1 Score: 189.9 bits (481), Expect = 1.3e-48
Identity = 103/166 (62.05%), Postives = 124/166 (74.70%), Query Frame = 1 

Query: 1   MALRM-WASSTANALRLSSASKTHLSSPFSLSRCFSTVLDGLKYASSHEWVKHEGEVATV 60
           MA R+ WAS  A+ LR+S A +      FS     S VL  LKYA SHEWVK +G  AT 
Sbjct: 1   MACRLFWASRVASHLRISVAQRG-----FS-----SVVLKDLKYADSHEWVKIDGNKATF 60

Query: 61  GITDHAQDHLGEVVFVDLPESGGSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKD 120
           GITDHAQDHLG+VV+V+LP+ G SVSQGKSFGAVESVKATSDINSP+SG++VEVN +L +
Sbjct: 61  GITDHAQDHLGDVVYVELPDVGHSVSQGKSFGAVESVKATSDINSPVSGKVVEVNEELTE 120

Query: 121 SPGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKHCEEEDAAH 166
           SPGL+NSSPYE GW+IKV+ S+  E + L    +Y+K CEEEDA H
Sbjct: 121 SPGLVNSSPYEQGWIIKVELSDAGEAEKLMDSDKYSKFCEEEDAKH 156

[Close]
BLAST of Cp4.1LG15g03480 vs. NCBI nr
Match: gi|449461527|ref|XP_004148493.1| (PREDICTED: glycine cleavage system H protein 3, mitochondrial [Cucumis sativus])

HSP 1 Score: 308.5 bits (789), Expect = 6.9e-81
Identity = 155/165 (93.94%), Postives = 158/165 (95.76%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSASKTHLSSPFSLSRCFSTVLDGLKYASSHEWVKHEGEVATVG 60
           MALRMWASSTANAL+LSS+SKTHLS  FSLSRCFSTVLDGLKYASSHEWVKHEG VATVG
Sbjct: 1   MALRMWASSTANALKLSSSSKTHLSPSFSLSRCFSTVLDGLKYASSHEWVKHEGSVATVG 60

Query: 61  ITDHAQDHLGEVVFVDLPESGGSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKDS 120
           ITDHAQDHLGEVVFVDLPESG SVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLK+S
Sbjct: 61  ITDHAQDHLGEVVFVDLPESGSSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKES 120

Query: 121 PGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKHCEEEDAAH 166
           PGLINSSPYEGGWMIKVKPSNP ELDSL GPKEYTK CEEEDAAH
Sbjct: 121 PGLINSSPYEGGWMIKVKPSNPGELDSLLGPKEYTKFCEEEDAAH 165

[Close]
BLAST of Cp4.1LG15g03480 vs. NCBI nr
Match: gi|659131962|ref|XP_008465945.1| (PREDICTED: glycine cleavage system H protein, mitochondrial [Cucumis melo])

HSP 1 Score: 307.4 bits (786), Expect = 1.5e-80
Identity = 154/165 (93.33%), Postives = 158/165 (95.76%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSASKTHLSSPFSLSRCFSTVLDGLKYASSHEWVKHEGEVATVG 60
           MALRMWASSTANAL+LSS+SKTHLS  FSLSRCFSTVLDGLKYASSHEWVKHEG VATVG
Sbjct: 1   MALRMWASSTANALKLSSSSKTHLSPSFSLSRCFSTVLDGLKYASSHEWVKHEGSVATVG 60

Query: 61  ITDHAQDHLGEVVFVDLPESGGSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKDS 120
           ITDHAQDHLGEVVFVDLPESG SVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLK++
Sbjct: 61  ITDHAQDHLGEVVFVDLPESGSSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKET 120

Query: 121 PGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKHCEEEDAAH 166
           PGLINSSPYEGGWMIKVKPSNP ELDSL GPKEYTK CEEEDAAH
Sbjct: 121 PGLINSSPYEGGWMIKVKPSNPGELDSLLGPKEYTKFCEEEDAAH 165

[Close]
BLAST of Cp4.1LG15g03480 vs. NCBI nr
Match: gi|694396308|ref|XP_009373439.1| (PREDICTED: glycine cleavage system H protein 3, mitochondrial-like [Pyrus x bretschneideri])

HSP 1 Score: 288.5 bits (737), Expect = 7.4e-75
Identity = 141/165 (85.45%), Postives = 156/165 (94.55%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSASKTHLSSPFSLSRCFSTVLDGLKYASSHEWVKHEGEVATVG 60
           MALR+WASSTANALR+S+ASK+HLS  FSLSRCFSTVLDGLKYASSHEWVKHEG VAT+G
Sbjct: 1   MALRLWASSTANALRISTASKSHLSPAFSLSRCFSTVLDGLKYASSHEWVKHEGSVATIG 60

Query: 61  ITDHAQDHLGEVVFVDLPESGGSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKDS 120
           ITDHAQDHLGEVVFV+LPE+G SVSQG SFGAVESVKATSD+NSPISGE+VEVN +L +S
Sbjct: 61  ITDHAQDHLGEVVFVELPEAGRSVSQGGSFGAVESVKATSDVNSPISGEVVEVNSKLTES 120

Query: 121 PGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKHCEEEDAAH 166
           PGLINSSPYEGGWMIK+KPS+P+EL+SL GPKEYTK CEEEDAAH
Sbjct: 121 PGLINSSPYEGGWMIKIKPSSPSELESLLGPKEYTKFCEEEDAAH 165

[Close]
BLAST of Cp4.1LG15g03480 vs. NCBI nr
Match: gi|694408602|ref|XP_009378975.1| (PREDICTED: glycine cleavage system H protein 3, mitochondrial [Pyrus x bretschneideri])

HSP 1 Score: 287.0 bits (733), Expect = 2.1e-74
Identity = 141/165 (85.45%), Postives = 155/165 (93.94%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSASKTHLSSPFSLSRCFSTVLDGLKYASSHEWVKHEGEVATVG 60
           MALR+WASSTANALR+S+ASK+HLS  FSLSRCFSTVLDGLKYASSHEWVKHEG VAT+G
Sbjct: 1   MALRLWASSTANALRISTASKSHLSPAFSLSRCFSTVLDGLKYASSHEWVKHEGSVATIG 60

Query: 61  ITDHAQDHLGEVVFVDLPESGGSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKDS 120
           ITDHAQDHLGEVVFV+LPESG SVSQG SFGAVESVKATSD+NSPISGE+VEVN +L +S
Sbjct: 61  ITDHAQDHLGEVVFVELPESGRSVSQGGSFGAVESVKATSDVNSPISGEVVEVNSKLTES 120

Query: 121 PGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKHCEEEDAAH 166
           PGLINSSPYE GWMIK+KPS+P+EL+SL GPKEYTK CEEEDAAH
Sbjct: 121 PGLINSSPYEDGWMIKIKPSSPSELESLLGPKEYTKFCEEEDAAH 165

[Close]
BLAST of Cp4.1LG15g03480 vs. NCBI nr
Match: gi|1021516122|ref|XP_016201540.1| (PREDICTED: glycine cleavage system H protein 3, mitochondrial-like [Arachis ipaensis])

HSP 1 Score: 285.8 bits (730), Expect = 4.8e-74
Identity = 143/167 (85.63%), Postives = 156/167 (93.41%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSA-SKTH-LSSPFSLSRCFSTVLDGLKYASSHEWVKHEGEVAT 60
           MALR+WASSTANAL+LSSA S+TH L SPFSLSRCFSTVLDGLKYA+SHEWVKHEG VAT
Sbjct: 1   MALRLWASSTANALKLSSAASRTHQLPSPFSLSRCFSTVLDGLKYANSHEWVKHEGSVAT 60

Query: 61  VGITDHAQDHLGEVVFVDLPESGGSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLK 120
           +GITDHAQDHLGEVVFVDLPE GGSV QG SFGAVESVKATSD+NSPISGEI+E+N  LK
Sbjct: 61  IGITDHAQDHLGEVVFVDLPEPGGSVKQGGSFGAVESVKATSDVNSPISGEIIEINASLK 120

Query: 121 DSPGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKHCEEEDAAH 166
           ++PGLINSSPYEGGWMIKVKP++PAELDSL GPKEYTK C+EEDAAH
Sbjct: 121 ETPGLINSSPYEGGWMIKVKPNSPAELDSLLGPKEYTKFCQEEDAAH 167

The following BLAST results are available for this feature:
BLAST of Cp4.1LG15g03480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
GCSH_FLAAN4.5e-7282.42Glycine cleavage system H protein, mitochondrial OS=Flaveria anomala GN=GDCSH PE... [more]
GCSH_FLAPR2.9e-7181.21Glycine cleavage system H protein, mitochondrial OS=Flaveria pringlei GN=GDCSH P... [more]
GCSH_PEA8.4e-7179.39Glycine cleavage system H protein, mitochondrial OS=Pisum sativum GN=GDCSH PE=1 ... [more]
GCSH3_ARATH8.4e-7180.72Glycine cleavage system H protein 3, mitochondrial OS=Arabidopsis thaliana GN=GD... [more]
GCSH1_ARATH2.5e-7082.53Glycine cleavage system H protein 1, mitochondrial OS=Arabidopsis thaliana GN=GD... [more]
BLAST of Cp4.1LG15g03480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LI67_CUCSA4.8e-8193.94Glycine cleavage system h protein OS=Cucumis sativus GN=Csa_3G903520 PE=3 SV=1[more]
A0A061GAI7_THECC5.7e-7484.24Single hybrid motif superfamily protein OS=Theobroma cacao GN=TCM_015756 PE=3 SV... [more]
A5BA00_VITVI2.2e-7384.24Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038357 PE=3 SV=1[more]
D7TTY4_VITVI3.7e-7383.03Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0012g01120 PE=3 SV=... [more]
A0A0B0NQG7_GOSAR3.1e-7282.42Glycine cleavage system H, mitochondrial OS=Gossypium arboreum GN=F383_19868 PE=... [more]
BLAST of Cp4.1LG15g03480 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G32470.14.8e-7280.72 Single hybrid motif superfamily protein[more]
AT2G35370.11.4e-7182.53 glycine decarboxylase complex H[more]
AT2G35120.11.3e-4862.05 Single hybrid motif superfamily protein[more]
BLAST of Cp4.1LG15g03480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449461527|ref|XP_004148493.1|6.9e-8193.94PREDICTED: glycine cleavage system H protein 3, mitochondrial [Cucumis sativus][more]
gi|659131962|ref|XP_008465945.1|1.5e-8093.33PREDICTED: glycine cleavage system H protein, mitochondrial [Cucumis melo][more]
gi|694396308|ref|XP_009373439.1|7.4e-7585.45PREDICTED: glycine cleavage system H protein 3, mitochondrial-like [Pyrus x bret... [more]
gi|694408602|ref|XP_009378975.1|2.1e-7485.45PREDICTED: glycine cleavage system H protein 3, mitochondrial [Pyrus x bretschne... [more]
gi|1021516122|ref|XP_016201540.1|4.8e-7485.63PREDICTED: glycine cleavage system H protein 3, mitochondrial-like [Arachis ipae... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0019464glycine decarboxylation via glycine cleavage system
Vocabulary: Cellular Component
TermDefinition
GO:0005960glycine cleavage complex
Vocabulary: INTERPRO
TermDefinition
IPR017453GCV_H_sub
IPR011053Single_hybrid_motif
IPR0030162-oxoA_DH_lipoyl-BS
IPR002930GCV_H
IPR000089Biotin_lipoyl
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019464 glycine decarboxylation via glycine cleavage system
biological_process GO:0006563 L-serine metabolic process
biological_process GO:0032259 methylation
biological_process GO:0006566 threonine metabolic process
cellular_component GO:0005960 glycine cleavage complex
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003674 molecular_function
molecular_function GO:0004047 aminomethyltransferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g03480.1Cp4.1LG15g03480.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000089Biotin/lipoyl attachmentPROFILEPS50968BIOTINYL_LIPOYLcoord: 56..138
score: 27
IPR002930Glycine cleavage system H-proteinHAMAPMF_00272GcvHcoord: 38..159
score: 2
IPR002930Glycine cleavage system H-proteinPANTHERPTHR11715GLYCINE CLEAVAGE SYSTEM H PROTEINcoord: 1..165
score: 3.3E
IPR002930Glycine cleavage system H-proteinPFAMPF01597GCV_Hcoord: 41..160
score: 1.4
IPR0030162-oxo acid dehydrogenase, lipoyl-binding sitePROSITEPS00189LIPOYLcoord: 81..110
scor
IPR011053Single hybrid motifunknownSSF51230Single hybrid motifcoord: 37..160
score: 2.26
IPR017453Glycine cleavage system H-protein, subgroupTIGRFAMsTIGR00527TIGR00527coord: 39..162
score: 8.8
NoneNo IPR availableGENE3DG3DSA:2.40.50.100coord: 40..161
score: 2.3
NoneNo IPR availablePANTHERPTHR11715:SF1GLYCINE CLEAVAGE SYSTEM H PROTEIN 3, MITOCHONDRIALcoord: 1..165
score: 3.3E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG15g03480Cucsa.313380Cucumber (Gy14) v1cgycpeB0819
Cp4.1LG15g03480CmaCh19G004540Cucurbita maxima (Rimu)cmacpeB522
Cp4.1LG15g03480CmaCh02G016000Cucurbita maxima (Rimu)cmacpeB612
Cp4.1LG15g03480CmoCh19G004700Cucurbita moschata (Rifu)cmocpeB481
Cp4.1LG15g03480CmoCh02G016410Cucurbita moschata (Rifu)cmocpeB560
Cp4.1LG15g03480Csa3G903520Cucumber (Chinese Long) v2cpecuB243
Cp4.1LG15g03480MELO3C003386Melon (DHL92) v3.5.1cpemeB228
Cp4.1LG15g03480CSPI03G46950Wild cucumber (PI 183967)cpecpiB246
Cp4.1LG15g03480Lsi05G000670Bottle gourd (USVL1VR-Ls)cpelsiB210
Cp4.1LG15g03480MELO3C003386.2Melon (DHL92) v3.6.1cpemedB267
Cp4.1LG15g03480CsaV3_3G049390Cucumber (Chinese Long) v3cpecucB0303
Cp4.1LG15g03480CsGy3G044350Cucumber (Gy14) v2cgybcpeB337
Cp4.1LG15g03480Carg27402Silver-seed gourdcarcpeB0133
Cp4.1LG15g03480Carg08823Silver-seed gourdcarcpeB1091
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG15g03480Cp4.1LG05g02010Cucurbita pepo (Zucchini)cpecpeB279
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG15g03480Wax gourdcpewgoB0323
Cp4.1LG15g03480Bottle gourd (USVL1VR-Ls)cpelsiB213
Cp4.1LG15g03480Watermelon (Charleston Gray)cpewcgB220
Cp4.1LG15g03480Watermelon (97103) v1cpewmB240
Cp4.1LG15g03480Cucumber (Gy14) v2cgybcpeB342
Cp4.1LG15g03480Melon (DHL92) v3.6.1cpemedB284
Cp4.1LG15g03480Cucumber (Chinese Long) v3cpecucB0288
Cp4.1LG15g03480Cucumber (Chinese Long) v3cpecucB0309