CmaCh02G016000 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh02G016000
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionGlycine cleavage system h protein
LocationCma_Chr02 : 9093206 .. 9095825 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGCACTCACTGCCCACCATCCGTCGAAGATAAACCAACAATGTCGTAAAACTTAAGTTTTCAAAACTTCCTTTCATTTCTTTGCTGATTGCTGATAGCTGATAGCATACCAAAGCAGAGGAAGAACAGGAACAAGAACAAGAAGAACAGACCCAAAATAAACAACAAAACTATGGCTCTCAGAATGTGGGCTTCTTCTACTGCTAATGCTCTCAGACTCTCTTCTTCATCCAAAACCCTTCTCTCTCCTCCATTTTCTATCTCCAGATGCTTTTCTACGGGTATTTTTTACTATTTCTTTCCTTGCCTGCAAGCTGTTTGTGTAAATGCGTCTGTGAACTTTGACTTTGCTTTTCTTTTTTTTTAATGTACTGTTGGATCCCACTTCCATTGTTTGATCTTGTTTGATTCTCAATTATGTTTAATTTCTTATCTGGGTAAGACAAAAGATGTTGGTTGGATTTGCAGTTTTGGACGGACTGAAGTATGCTTCTTCACATGAGTGGGTGAAACATGAGGGCCCTGTTGCTACCATTGGCATCACTGACCATGCTCAGGTGCTTTTCATTTCTAAACGCCAATATTCTAACTTTTGTTTCCCTGAATTTTAGATTAAACTCTTAAGTTTGGTTCACGAACTTTTAGGACACTGTCTATTTAATCTCATTCTTATTCATACATTTTCATAACTGAATTCCTAATAACTTACTGAACTTTCAAATTTGTGTGTAATGAGTTTATATCATTTACTTGTTGAGTTATTGTCTAGATAGATTATAAAGGTTGCATTGAAAATCAACCACGGAGGACATGTCATGTTAGTGTTAAATGAAGTTAACGCAGGACCTCATTGTGAAAGTGTTGAGACCTATTAAAAACTTTTATAATACAACTACGAAGGAGAAACAGTGGTAAAAGTTTAGATACCAAACATATAATTTAACCTAAATTATGCGTGCATATGACAACTTGATACTTAACATTCCTGTTGCTGCTACTCAAAACAATGGAAACTGATTCAAACTTTTATTTTAACATCTTGTATATCAGTCCACTATAGAAAATTTGGGTTTATACTTGAAATTCAAACTTGGATTGGAAGCGTTTTGTTTGATGCATCTCTACAGGACCATCTGGGAGAAGTGGTGTTCGTGGATCTGCCAGAATCAGGAGCTCCGGTTTCTCAAGGTAAGAGCTTTGGAGCAGTGGAGAGTGTAAAAGCAACCAGTGATATCAACTCCCCAATCTCTGGTGAGATTGTTGAAGTTAATCCACAGCTGAAGGATTCACCTGGTTTGGTAATTTCGAATGCTCACATCTTTTTGCCTATTCTTTGGACTCTGAATTTGGCTGATAAAACTGTTTTAAGTGCTTAATCTCGTCCCACATCGGCTCACGGTCCTACATTTTTTACCGCGCGGTGTTGTGATCTTGACACGTTCACGACCAGCCTTAAGGGGAATTAAGCCCCATATATATTTTTCGTCCTGACCTTTTGGGGAAGTCCAAAGCAAAGCCAATATCATACCATTGTGGAGAGTCGTGTTCATCTAACATGGTATCAAACTCATGCTCTAAATTTGGCCATGCCAATAAAATCCTCAAATGTCGAACAAATAACTCCAAAAGAAAAGAAGTCGAGGCTCCTCAAAGGCATAGTAAAAAATGACTAAGACTCCAAAAGAAAAGGAGTCGAGCCTCGATTAAGGGGAGGTGTACTTTGTTCGAGGGGAGGTGTTGGTGGATGAAAGTCCCACATTGGCTAATTTAGGGAATGATCATGGGTTTATAATCAAGGAATATTATCTCCATTAGTATGAGACCTTTTGAAGAACCTCAAAGCAAAGCCATGAGAGCTTATGCTTAAAGTGGACAATATCATACCGTTGTGAGTCGTGTTCATCTAATATTTAATATTGCACTTTTTATTATCCAATTAAATATGACAGAGGATCATGTGAAAGCTGAAAAACAATAGTAACTTTTAAGTATGAATGAAGCATATTGATTTATTTTGTTCCATATGTTCATGAAATGAAGATCAATTCAAGTCCATATGAAGGAGGTTGGATGATAAAAGTGAAGCCAAGCAATCCAGCTGAATTAGATTCCTTGTTTGGTCCAAAAGAATACACAAAGTTTTGTGAGGAAGAAGACGCAGCGCACTAGAGGTGAGCAACAAATGTGTATTCCAAACAGGGCTTGAGTTAATAATCCTTTTGAAGCTGCTTCATTTGTTGAAACCTCACAAGCTATGTCTGAGGAGAAAGAGAGCCAAAAATTACAAGCTCTTGTGAGTTGAAATGTGCCCAAAACTTCATCCATCCTTGAATGTTTATCCCACTTGCAATTAATTGAATTACTCTGCCATATTTTTATTCATGGTTGATTCTTGAATGTGGTGAACTTGTTGCGGATTGTTGGGAGAGGAGTCCCACGTCGGTTAATCAAGGAGTTGATCATGGGTTCATAAGTAAGGAATATATCTCCAATGATAATGAGACCTTTTGGGGAAATCAAAAGAAAAGCCACGAGAGCTTATGCTCAAAGTGGACAATATCATACTATTGTGGAGGTTTGTGATTCGTACCTAAGAGCTTGAATCACGAGGGAGCAGCAC

mRNA sequence

AGGCACTCACTGCCCACCATCCGTCGAAGATAAACCAACAATGTCGTAAAACTTAAGTTTTCAAAACTTCCTTTCATTTCTTTGCTGATTGCTGATAGCTGATAGCATACCAAAGCAGAGGAAGAACAGGAACAAGAACAAGAAGAACAGACCCAAAATAAACAACAAAACTATGGCTCTCAGAATGTGGGCTTCTTCTACTGCTAATGCTCTCAGACTCTCTTCTTCATCCAAAACCCTTCTCTCTCCTCCATTTTCTATCTCCAGATGCTTTTCTACGGTTTTGGACGGACTGAAGTATGCTTCTTCACATGAGTGGGTGAAACATGAGGGCCCTGTTGCTACCATTGGCATCACTGACCATGCTCAGGACCATCTGGGAGAAGTGGTGTTCGTGGATCTGCCAGAATCAGGAGCTCCGGTTTCTCAAGGTAAGAGCTTTGGAGCAGTGGAGAGTGTAAAAGCAACCAGTGATATCAACTCCCCAATCTCTGGTGAGATTGTTGAAGTTAATCCACAGCTGAAGGATTCACCTGGTTTGATCAATTCAAGTCCATATGAAGGAGGTTGGATGATAAAAGTGAAGCCAAGCAATCCAGCTGAATTAGATTCCTTGTTTGGTCCAAAAGAATACACAAAGTTTTGTGAGGAAGAAGACGCAGCGCACTAGAGGTGAGCAACAAATGTGTATTCCAAACAGGGCTTGAGTTAATAATCCTTTTGAAGCTGCTTCATTTGTTGAAACCTCACAAGCTATGTCTGAGGAGAAAGAGAGCCAAAAATTACAAGCTCTTGTGAGTTGAAATGTGCCCAAAACTTCATCCATCCTTGAATGTTTATCCCACTTGCAATTAATTGAATTACTCTGCCATATTTTTATTCATGGTTGATTCTTGAATGTGGTGAACTTGTTGCGGATTGTTGGGAGAGGAGTCCCACGTCGGTTAATCAAGGAGTTGATCATGGGTTCATAAGTAAGGAATATATCTCCAATGATAATGAGACCTTTTGGGGAAATCAAAAGAAAAGCCACGAGAGCTTATGCTCAAAGTGGACAATATCATACTATTGTGGAGGTTTGTGATTCGTACCTAAGAGCTTGAATCACGAGGGAGCAGCAC

Coding sequence (CDS)

ATGGCTCTCAGAATGTGGGCTTCTTCTACTGCTAATGCTCTCAGACTCTCTTCTTCATCCAAAACCCTTCTCTCTCCTCCATTTTCTATCTCCAGATGCTTTTCTACGGTTTTGGACGGACTGAAGTATGCTTCTTCACATGAGTGGGTGAAACATGAGGGCCCTGTTGCTACCATTGGCATCACTGACCATGCTCAGGACCATCTGGGAGAAGTGGTGTTCGTGGATCTGCCAGAATCAGGAGCTCCGGTTTCTCAAGGTAAGAGCTTTGGAGCAGTGGAGAGTGTAAAAGCAACCAGTGATATCAACTCCCCAATCTCTGGTGAGATTGTTGAAGTTAATCCACAGCTGAAGGATTCACCTGGTTTGATCAATTCAAGTCCATATGAAGGAGGTTGGATGATAAAAGTGAAGCCAAGCAATCCAGCTGAATTAGATTCCTTGTTTGGTCCAAAAGAATACACAAAGTTTTGTGAGGAAGAAGACGCAGCGCACTAG

Protein sequence

MALRMWASSTANALRLSSSSKTLLSPPFSISRCFSTVLDGLKYASSHEWVKHEGPVATIGITDHAQDHLGEVVFVDLPESGAPVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKDSPGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKFCEEEDAAH
Homology
[Close]
BLAST of CmaCh02G016000 vs. Swiss-Prot
Match: GCSH_PEA (Glycine cleavage system H protein, mitochondrial OS=Pisum sativum GN=GDCSH PE=1 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 2.0e-72
Identity = 134/165 (81.21%), Postives = 146/165 (88.48%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSSSKTLLSPPFSISRCFSTVLDGLKYASSHEWVKHEGPVATIG 60
           MALRMWASSTANAL+LSSSS+  LSP FSISRCFS VLDGLKYA SHEWVKHEG VATIG
Sbjct: 1   MALRMWASSTANALKLSSSSRLHLSPTFSISRCFSNVLDGLKYAPSHEWVKHEGSVATIG 60

Query: 61  ITDHAQDHLGEVVFVDLPESGAPVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKDS 120
           ITDHAQDHLGEVVFV+LPE G  V++GK FGAVESVKATSD+NSPISGE++EVN  L   
Sbjct: 61  ITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGK 120

Query: 121 PGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKFCEEEDAAH 166
           PGLINSSPYE GWMIK+KP++P EL+SL G KEYTKFCEEEDAAH
Sbjct: 121 PGLINSSPYEDGWMIKIKPTSPDELESLLGAKEYTKFCEEEDAAH 165

[Close]
BLAST of CmaCh02G016000 vs. Swiss-Prot
Match: GCSH3_ARATH (Glycine cleavage system H protein 3, mitochondrial OS=Arabidopsis thaliana GN=GDH3 PE=1 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 7.6e-72
Identity = 136/166 (81.93%), Postives = 153/166 (92.17%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSS-SKTLLSPPFSISRCFSTVLDGLKYASSHEWVKHEGPVATI 60
           MALRMWASSTANAL+LSSS SK+ L P FSISRCFS+VL+GLKYA+SHEWVKHEG VATI
Sbjct: 1   MALRMWASSTANALKLSSSASKSHLLPAFSISRCFSSVLEGLKYANSHEWVKHEGSVATI 60

Query: 61  GITDHAQDHLGEVVFVDLPESGAPVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKD 120
           GITDHAQDHLGEVVFV+LPE+ + VS+ KSFGAVESVKATS+I SPISGE++EVN +L +
Sbjct: 61  GITDHAQDHLGEVVFVELPEANSSVSKEKSFGAVESVKATSEILSPISGEVIEVNTKLTE 120

Query: 121 SPGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKFCEEEDAAH 166
           SPGLINSSPYE GWMIKVKPS+PAEL++L GPKEYTKFCEEEDAAH
Sbjct: 121 SPGLINSSPYEDGWMIKVKPSSPAELEALMGPKEYTKFCEEEDAAH 166

[Close]
BLAST of CmaCh02G016000 vs. Swiss-Prot
Match: GCSH_FLAAN (Glycine cleavage system H protein, mitochondrial OS=Flaveria anomala GN=GDCSH PE=2 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 1.7e-71
Identity = 134/165 (81.21%), Postives = 148/165 (89.70%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSSSKTLLSPPFSISRCFSTVLDGLKYASSHEWVKHEGPVATIG 60
           MALRMWASSTANALRLSS+++   SP   +SRCFS+VLDGLKYA+SHEWVKHEG VATIG
Sbjct: 1   MALRMWASSTANALRLSSATRPHFSP---LSRCFSSVLDGLKYANSHEWVKHEGSVATIG 60

Query: 61  ITDHAQDHLGEVVFVDLPESGAPVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKDS 120
           ITDHAQDHLGEVVFVDLPE+G  V++   FGAVESVKATSD+NSPISGEIVEVN +L ++
Sbjct: 61  ITDHAQDHLGEVVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSET 120

Query: 121 PGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKFCEEEDAAH 166
           PGLINSSPYE GWMIKVKPSNP+ELDSL G KEYTKFCEEEDAAH
Sbjct: 121 PGLINSSPYEDGWMIKVKPSNPSELDSLMGAKEYTKFCEEEDAAH 162

[Close]
BLAST of CmaCh02G016000 vs. Swiss-Prot
Match: GCSH_FLAPR (Glycine cleavage system H protein, mitochondrial OS=Flaveria pringlei GN=GDCSH PE=2 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.1e-70
Identity = 132/165 (80.00%), Postives = 148/165 (89.70%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSSSKTLLSPPFSISRCFSTVLDGLKYASSHEWVKHEGPVATIG 60
           MALR+WASSTANALRLSS+++   SP   +SRCFS+VLDGLKYA+SHEWVKHEG VATIG
Sbjct: 1   MALRIWASSTANALRLSSATRPHFSP---LSRCFSSVLDGLKYANSHEWVKHEGSVATIG 60

Query: 61  ITDHAQDHLGEVVFVDLPESGAPVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKDS 120
           ITDHAQDHLGEVVFVDLPE+G  V++   FGAVESVKATSD+NSPISGEIVEVN +L ++
Sbjct: 61  ITDHAQDHLGEVVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSET 120

Query: 121 PGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKFCEEEDAAH 166
           PGLINSSPYE GWMIKVKPSNP+ELDSL G KEYTKFCEEED+AH
Sbjct: 121 PGLINSSPYEDGWMIKVKPSNPSELDSLMGAKEYTKFCEEEDSAH 162

[Close]
BLAST of CmaCh02G016000 vs. Swiss-Prot
Match: GCSH1_ARATH (Glycine cleavage system H protein 1, mitochondrial OS=Arabidopsis thaliana GN=GDH1 PE=1 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.4e-70
Identity = 138/166 (83.13%), Postives = 150/166 (90.36%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSS-SKTLLSPPFSISRCFSTVLDGLKYASSHEWVKHEGPVATI 60
           MALRMWASSTANAL+LSSS SK+ LS PFS SRCFSTVL+GLKYA+SHEWVKHEG VATI
Sbjct: 1   MALRMWASSTANALKLSSSVSKSHLS-PFSFSRCFSTVLEGLKYANSHEWVKHEGSVATI 60

Query: 61  GITDHAQDHLGEVVFVDLPESGAPVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKD 120
           GIT HAQDHLGEVVFV+LPE    VS+ KSFGAVESVKATS+I SPISGEI+EVN +L +
Sbjct: 61  GITAHAQDHLGEVVFVELPEDNTSVSKEKSFGAVESVKATSEILSPISGEIIEVNKKLTE 120

Query: 121 SPGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKFCEEEDAAH 166
           SPGLINSSPYE GWMIKVKPS+PAEL+SL GPKEYTKFCEEEDAAH
Sbjct: 121 SPGLINSSPYEDGWMIKVKPSSPAELESLMGPKEYTKFCEEEDAAH 165

[Close]
BLAST of CmaCh02G016000 vs. TrEMBL
Match: A0A0A0LI67_CUCSA (Glycine cleavage system h protein OS=Cucumis sativus GN=Csa_3G903520 PE=3 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 9.7e-82
Identity = 154/165 (93.33%), Postives = 159/165 (96.36%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSSSKTLLSPPFSISRCFSTVLDGLKYASSHEWVKHEGPVATIG 60
           MALRMWASSTANAL+LSSSSKT LSP FS+SRCFSTVLDGLKYASSHEWVKHEG VAT+G
Sbjct: 1   MALRMWASSTANALKLSSSSKTHLSPSFSLSRCFSTVLDGLKYASSHEWVKHEGSVATVG 60

Query: 61  ITDHAQDHLGEVVFVDLPESGAPVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKDS 120
           ITDHAQDHLGEVVFVDLPESG+ VSQGKSFGAVESVKATSDINSPISGEIVEVNPQLK+S
Sbjct: 61  ITDHAQDHLGEVVFVDLPESGSSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKES 120

Query: 121 PGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKFCEEEDAAH 166
           PGLINSSPYEGGWMIKVKPSNP ELDSL GPKEYTKFCEEEDAAH
Sbjct: 121 PGLINSSPYEGGWMIKVKPSNPGELDSLLGPKEYTKFCEEEDAAH 165

[Close]
BLAST of CmaCh02G016000 vs. TrEMBL
Match: A0A061GAI7_THECC (Single hybrid motif superfamily protein OS=Theobroma cacao GN=TCM_015756 PE=3 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 2.2e-73
Identity = 137/165 (83.03%), Postives = 152/165 (92.12%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSSSKTLLSPPFSISRCFSTVLDGLKYASSHEWVKHEGPVATIG 60
           MALRMWASSTANAL++S +SK  LSP FS+SRCFSTVLDGLKYA+SHEWVKHEG VATIG
Sbjct: 1   MALRMWASSTANALKISCASKAHLSPAFSLSRCFSTVLDGLKYANSHEWVKHEGSVATIG 60

Query: 61  ITDHAQDHLGEVVFVDLPESGAPVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKDS 120
           ITDHAQDHLGEVVFVDLPE G  VSQGK FGAVESVKATSD+NSPISGE+VEVN +L ++
Sbjct: 61  ITDHAQDHLGEVVFVDLPEPGGSVSQGKGFGAVESVKATSDVNSPISGEVVEVNSKLTEA 120

Query: 121 PGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKFCEEEDAAH 166
           PGLINSSPYE GW+IKVKPS+P+EL+SL GPKEYTKFCEEEDA+H
Sbjct: 121 PGLINSSPYEDGWIIKVKPSSPSELESLMGPKEYTKFCEEEDASH 165

[Close]
BLAST of CmaCh02G016000 vs. TrEMBL
Match: I3SRF4_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 2.8e-73
Identity = 139/166 (83.73%), Postives = 153/166 (92.17%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSSSKTL-LSPPFSISRCFSTVLDGLKYASSHEWVKHEGPVATI 60
           MALRMWASSTANAL+LSSS+  L LSPPFS+SRCFS+VLDGLKYASSHEWVKHEG VATI
Sbjct: 1   MALRMWASSTANALKLSSSASRLHLSPPFSLSRCFSSVLDGLKYASSHEWVKHEGSVATI 60

Query: 61  GITDHAQDHLGEVVFVDLPESGAPVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKD 120
           GITDHAQDHLGE VFV+LPESG PV++G  FGAVESVKATSDINSPISGEI+EVN +L +
Sbjct: 61  GITDHAQDHLGEAVFVELPESGKPVTKGDGFGAVESVKATSDINSPISGEIIEVNTKLSE 120

Query: 121 SPGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKFCEEEDAAH 166
            PGLIN+SPYE GWMIKVKPS+P+ELDSL GP+EYTKFCEEEDAAH
Sbjct: 121 QPGLINTSPYEDGWMIKVKPSSPSELDSLLGPQEYTKFCEEEDAAH 166

[Close]
BLAST of CmaCh02G016000 vs. TrEMBL
Match: A0A0B0NQG7_GOSAR (Glycine cleavage system H, mitochondrial OS=Gossypium arboreum GN=F383_19868 PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 3.7e-73
Identity = 137/165 (83.03%), Postives = 152/165 (92.12%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSSSKTLLSPPFSISRCFSTVLDGLKYASSHEWVKHEGPVATIG 60
           MALRMWASSTANAL++S SSK  +S  FS+SRCFSTVLDGLKYA+SHEWVKHEGPVATIG
Sbjct: 1   MALRMWASSTANALKISCSSKPNVSLAFSLSRCFSTVLDGLKYANSHEWVKHEGPVATIG 60

Query: 61  ITDHAQDHLGEVVFVDLPESGAPVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKDS 120
           ITDHAQDHLGEVVFV+LPE G  VSQGK FGAVESVKATSD+NSPISGE+VEVN +L ++
Sbjct: 61  ITDHAQDHLGEVVFVELPEPGGSVSQGKGFGAVESVKATSDVNSPISGEVVEVNSKLSET 120

Query: 121 PGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKFCEEEDAAH 166
           PGLINSSPYE GWMIKVKPS+P+EL+SL GPKEYTKFCEEEDA+H
Sbjct: 121 PGLINSSPYEDGWMIKVKPSSPSELESLMGPKEYTKFCEEEDASH 165

[Close]
BLAST of CmaCh02G016000 vs. TrEMBL
Match: A5BA00_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038357 PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 8.2e-73
Identity = 137/165 (83.03%), Postives = 150/165 (90.91%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSSSKTLLSPPFSISRCFSTVLDGLKYASSHEWVKHEGPVATIG 60
           MALRMWASSTANALR+S +SK  +SP FS+SRCFS+VLDGLKYA+SHEWVKHEG VATIG
Sbjct: 1   MALRMWASSTANALRVSCASKAHVSPAFSLSRCFSSVLDGLKYATSHEWVKHEGSVATIG 60

Query: 61  ITDHAQDHLGEVVFVDLPESGAPVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKDS 120
           ITDHAQDHLGEVVFV+LPE G  VS+G  FGAVESVKATSDINSPISGE+VEVN +L +S
Sbjct: 61  ITDHAQDHLGEVVFVELPEPGGSVSKGNGFGAVESVKATSDINSPISGEVVEVNSKLSES 120

Query: 121 PGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKFCEEEDAAH 166
           PGLINSSPYE GWMIKVKP NP+EL+SL GPKEYTKFCEEEDAAH
Sbjct: 121 PGLINSSPYEDGWMIKVKPGNPSELESLMGPKEYTKFCEEEDAAH 165

[Close]
BLAST of CmaCh02G016000 vs. TAIR10
Match: AT1G32470.1 (AT1G32470.1 Single hybrid motif superfamily protein)

HSP 1 Score: 271.2 bits (692), Expect = 4.3e-73
Identity = 136/166 (81.93%), Postives = 153/166 (92.17%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSS-SKTLLSPPFSISRCFSTVLDGLKYASSHEWVKHEGPVATI 60
           MALRMWASSTANAL+LSSS SK+ L P FSISRCFS+VL+GLKYA+SHEWVKHEG VATI
Sbjct: 1   MALRMWASSTANALKLSSSASKSHLLPAFSISRCFSSVLEGLKYANSHEWVKHEGSVATI 60

Query: 61  GITDHAQDHLGEVVFVDLPESGAPVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKD 120
           GITDHAQDHLGEVVFV+LPE+ + VS+ KSFGAVESVKATS+I SPISGE++EVN +L +
Sbjct: 61  GITDHAQDHLGEVVFVELPEANSSVSKEKSFGAVESVKATSEILSPISGEVIEVNTKLTE 120

Query: 121 SPGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKFCEEEDAAH 166
           SPGLINSSPYE GWMIKVKPS+PAEL++L GPKEYTKFCEEEDAAH
Sbjct: 121 SPGLINSSPYEDGWMIKVKPSSPAELEALMGPKEYTKFCEEEDAAH 166

[Close]
BLAST of CmaCh02G016000 vs. TAIR10
Match: AT2G35370.1 (AT2G35370.1 glycine decarboxylase complex H)

HSP 1 Score: 266.9 bits (681), Expect = 8.1e-72
Identity = 138/166 (83.13%), Postives = 150/166 (90.36%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSS-SKTLLSPPFSISRCFSTVLDGLKYASSHEWVKHEGPVATI 60
           MALRMWASSTANAL+LSSS SK+ LS PFS SRCFSTVL+GLKYA+SHEWVKHEG VATI
Sbjct: 1   MALRMWASSTANALKLSSSVSKSHLS-PFSFSRCFSTVLEGLKYANSHEWVKHEGSVATI 60

Query: 61  GITDHAQDHLGEVVFVDLPESGAPVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKD 120
           GIT HAQDHLGEVVFV+LPE    VS+ KSFGAVESVKATS+I SPISGEI+EVN +L +
Sbjct: 61  GITAHAQDHLGEVVFVELPEDNTSVSKEKSFGAVESVKATSEILSPISGEIIEVNKKLTE 120

Query: 121 SPGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKFCEEEDAAH 166
           SPGLINSSPYE GWMIKVKPS+PAEL+SL GPKEYTKFCEEEDAAH
Sbjct: 121 SPGLINSSPYEDGWMIKVKPSSPAELESLMGPKEYTKFCEEEDAAH 165

[Close]
BLAST of CmaCh02G016000 vs. TAIR10
Match: AT2G35120.1 (AT2G35120.1 Single hybrid motif superfamily protein)

HSP 1 Score: 191.8 bits (486), Expect = 3.3e-49
Identity = 102/166 (61.45%), Postives = 124/166 (74.70%), Query Frame = 1 

Query: 1   MALRM-WASSTANALRLSSSSKTLLSPPFSISRCFSTVLDGLKYASSHEWVKHEGPVATI 60
           MA R+ WAS  A+ LR+S + +      FS     S VL  LKYA SHEWVK +G  AT 
Sbjct: 1   MACRLFWASRVASHLRISVAQRG-----FS-----SVVLKDLKYADSHEWVKIDGNKATF 60

Query: 61  GITDHAQDHLGEVVFVDLPESGAPVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKD 120
           GITDHAQDHLG+VV+V+LP+ G  VSQGKSFGAVESVKATSDINSP+SG++VEVN +L +
Sbjct: 61  GITDHAQDHLGDVVYVELPDVGHSVSQGKSFGAVESVKATSDINSPVSGKVVEVNEELTE 120

Query: 121 SPGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKFCEEEDAAH 166
           SPGL+NSSPYE GW+IKV+ S+  E + L    +Y+KFCEEEDA H
Sbjct: 121 SPGLVNSSPYEQGWIIKVELSDAGEAEKLMDSDKYSKFCEEEDAKH 156

[Close]
BLAST of CmaCh02G016000 vs. NCBI nr
Match: gi|449461527|ref|XP_004148493.1| (PREDICTED: glycine cleavage system H protein 3, mitochondrial [Cucumis sativus])

HSP 1 Score: 310.8 bits (795), Expect = 1.4e-81
Identity = 154/165 (93.33%), Postives = 159/165 (96.36%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSSSKTLLSPPFSISRCFSTVLDGLKYASSHEWVKHEGPVATIG 60
           MALRMWASSTANAL+LSSSSKT LSP FS+SRCFSTVLDGLKYASSHEWVKHEG VAT+G
Sbjct: 1   MALRMWASSTANALKLSSSSKTHLSPSFSLSRCFSTVLDGLKYASSHEWVKHEGSVATVG 60

Query: 61  ITDHAQDHLGEVVFVDLPESGAPVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKDS 120
           ITDHAQDHLGEVVFVDLPESG+ VSQGKSFGAVESVKATSDINSPISGEIVEVNPQLK+S
Sbjct: 61  ITDHAQDHLGEVVFVDLPESGSSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKES 120

Query: 121 PGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKFCEEEDAAH 166
           PGLINSSPYEGGWMIKVKPSNP ELDSL GPKEYTKFCEEEDAAH
Sbjct: 121 PGLINSSPYEGGWMIKVKPSNPGELDSLLGPKEYTKFCEEEDAAH 165

[Close]
BLAST of CmaCh02G016000 vs. NCBI nr
Match: gi|659131962|ref|XP_008465945.1| (PREDICTED: glycine cleavage system H protein, mitochondrial [Cucumis melo])

HSP 1 Score: 309.7 bits (792), Expect = 3.1e-81
Identity = 153/165 (92.73%), Postives = 159/165 (96.36%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSSSKTLLSPPFSISRCFSTVLDGLKYASSHEWVKHEGPVATIG 60
           MALRMWASSTANAL+LSSSSKT LSP FS+SRCFSTVLDGLKYASSHEWVKHEG VAT+G
Sbjct: 1   MALRMWASSTANALKLSSSSKTHLSPSFSLSRCFSTVLDGLKYASSHEWVKHEGSVATVG 60

Query: 61  ITDHAQDHLGEVVFVDLPESGAPVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKDS 120
           ITDHAQDHLGEVVFVDLPESG+ VSQGKSFGAVESVKATSDINSPISGEIVEVNPQLK++
Sbjct: 61  ITDHAQDHLGEVVFVDLPESGSSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKET 120

Query: 121 PGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKFCEEEDAAH 166
           PGLINSSPYEGGWMIKVKPSNP ELDSL GPKEYTKFCEEEDAAH
Sbjct: 121 PGLINSSPYEGGWMIKVKPSNPGELDSLLGPKEYTKFCEEEDAAH 165

[Close]
BLAST of CmaCh02G016000 vs. NCBI nr
Match: gi|694396308|ref|XP_009373439.1| (PREDICTED: glycine cleavage system H protein 3, mitochondrial-like [Pyrus x bretschneideri])

HSP 1 Score: 289.3 bits (739), Expect = 4.3e-75
Identity = 140/165 (84.85%), Postives = 156/165 (94.55%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSSSKTLLSPPFSISRCFSTVLDGLKYASSHEWVKHEGPVATIG 60
           MALR+WASSTANALR+S++SK+ LSP FS+SRCFSTVLDGLKYASSHEWVKHEG VATIG
Sbjct: 1   MALRLWASSTANALRISTASKSHLSPAFSLSRCFSTVLDGLKYASSHEWVKHEGSVATIG 60

Query: 61  ITDHAQDHLGEVVFVDLPESGAPVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKDS 120
           ITDHAQDHLGEVVFV+LPE+G  VSQG SFGAVESVKATSD+NSPISGE+VEVN +L +S
Sbjct: 61  ITDHAQDHLGEVVFVELPEAGRSVSQGGSFGAVESVKATSDVNSPISGEVVEVNSKLTES 120

Query: 121 PGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKFCEEEDAAH 166
           PGLINSSPYEGGWMIK+KPS+P+EL+SL GPKEYTKFCEEEDAAH
Sbjct: 121 PGLINSSPYEGGWMIKIKPSSPSELESLLGPKEYTKFCEEEDAAH 165

[Close]
BLAST of CmaCh02G016000 vs. NCBI nr
Match: gi|694404352|ref|XP_009377058.1| (PREDICTED: glycine cleavage system H protein 3, mitochondrial-like isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 288.1 bits (736), Expect = 9.6e-75
Identity = 140/165 (84.85%), Postives = 155/165 (93.94%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSSSKTLLSPPFSISRCFSTVLDGLKYASSHEWVKHEGPVATIG 60
           MALR+WASSTANALR+S++SK+ LSP FS+SRCFSTVLDGLKYASSHEWVKHEG VATIG
Sbjct: 1   MALRLWASSTANALRISTASKSQLSPAFSLSRCFSTVLDGLKYASSHEWVKHEGSVATIG 60

Query: 61  ITDHAQDHLGEVVFVDLPESGAPVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKDS 120
           ITDHAQDHLGEVVFV+LPESG  VSQG SFGAVESVKATSD+NSPISGE+VEVN +L +S
Sbjct: 61  ITDHAQDHLGEVVFVELPESGRSVSQGGSFGAVESVKATSDVNSPISGEVVEVNSKLTES 120

Query: 121 PGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKFCEEEDAAH 166
           PGLINSSPYE GWMIK+KPS+P+EL+SL GPKEYTKFCEEEDAAH
Sbjct: 121 PGLINSSPYEDGWMIKIKPSSPSELESLLGPKEYTKFCEEEDAAH 165

[Close]
BLAST of CmaCh02G016000 vs. NCBI nr
Match: gi|1009157557|ref|XP_015896821.1| (PREDICTED: glycine cleavage system H protein, mitochondrial-like [Ziziphus jujuba])

HSP 1 Score: 287.7 bits (735), Expect = 1.3e-74
Identity = 138/165 (83.64%), Postives = 154/165 (93.33%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSSSKTLLSPPFSISRCFSTVLDGLKYASSHEWVKHEGPVATIG 60
           MALRMWASSTANAL++S +SK  LSP F++S+CFSTVLDGLKYA+SHEWVKHEGPVAT+G
Sbjct: 1   MALRMWASSTANALKISCASKANLSPTFALSKCFSTVLDGLKYANSHEWVKHEGPVATVG 60

Query: 61  ITDHAQDHLGEVVFVDLPESGAPVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKDS 120
           ITDHAQDHLGEVVFV+LPESG  VSQG SFGAVESVKATSD+NSPISGE+VEVN +L +S
Sbjct: 61  ITDHAQDHLGEVVFVELPESGVSVSQGASFGAVESVKATSDVNSPISGEVVEVNTKLSES 120

Query: 121 PGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKFCEEEDAAH 166
           PGLINSSP+E GWMIKVKPSNP+EL+SL GPKEYTKFCEEEDAAH
Sbjct: 121 PGLINSSPFEDGWMIKVKPSNPSELESLLGPKEYTKFCEEEDAAH 165

The following BLAST results are available for this feature:
BLAST of CmaCh02G016000 vs. Swiss-Prot
Match NameE-valueIdentityDescription
GCSH_PEA2.0e-7281.21Glycine cleavage system H protein, mitochondrial OS=Pisum sativum GN=GDCSH PE=1 ... [more]
GCSH3_ARATH7.6e-7281.93Glycine cleavage system H protein 3, mitochondrial OS=Arabidopsis thaliana GN=GD... [more]
GCSH_FLAAN1.7e-7181.21Glycine cleavage system H protein, mitochondrial OS=Flaveria anomala GN=GDCSH PE... [more]
GCSH_FLAPR1.1e-7080.00Glycine cleavage system H protein, mitochondrial OS=Flaveria pringlei GN=GDCSH P... [more]
GCSH1_ARATH1.4e-7083.13Glycine cleavage system H protein 1, mitochondrial OS=Arabidopsis thaliana GN=GD... [more]
BLAST of CmaCh02G016000 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LI67_CUCSA9.7e-8293.33Glycine cleavage system h protein OS=Cucumis sativus GN=Csa_3G903520 PE=3 SV=1[more]
A0A061GAI7_THECC2.2e-7383.03Single hybrid motif superfamily protein OS=Theobroma cacao GN=TCM_015756 PE=3 SV... [more]
I3SRF4_LOTJA2.8e-7383.73Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
A0A0B0NQG7_GOSAR3.7e-7383.03Glycine cleavage system H, mitochondrial OS=Gossypium arboreum GN=F383_19868 PE=... [more]
A5BA00_VITVI8.2e-7383.03Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038357 PE=3 SV=1[more]
BLAST of CmaCh02G016000 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G32470.14.3e-7381.93 Single hybrid motif superfamily protein[more]
AT2G35370.18.1e-7283.13 glycine decarboxylase complex H[more]
AT2G35120.13.3e-4961.45 Single hybrid motif superfamily protein[more]
BLAST of CmaCh02G016000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449461527|ref|XP_004148493.1|1.4e-8193.33PREDICTED: glycine cleavage system H protein 3, mitochondrial [Cucumis sativus][more]
gi|659131962|ref|XP_008465945.1|3.1e-8192.73PREDICTED: glycine cleavage system H protein, mitochondrial [Cucumis melo][more]
gi|694396308|ref|XP_009373439.1|4.3e-7584.85PREDICTED: glycine cleavage system H protein 3, mitochondrial-like [Pyrus x bret... [more]
gi|694404352|ref|XP_009377058.1|9.6e-7584.85PREDICTED: glycine cleavage system H protein 3, mitochondrial-like isoform X1 [P... [more]
gi|1009157557|ref|XP_015896821.1|1.3e-7483.64PREDICTED: glycine cleavage system H protein, mitochondrial-like [Ziziphus jujub... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000089Biotin_lipoyl
IPR002930GCV_H
IPR0030162-oxoA_DH_lipoyl-BS
IPR011053Single_hybrid_motif
IPR017453GCV_H_sub
Vocabulary: Cellular Component
TermDefinition
GO:0005960glycine cleavage complex
Vocabulary: Biological Process
TermDefinition
GO:0019464glycine decarboxylation via glycine cleavage system
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019464 glycine decarboxylation via glycine cleavage system
cellular_component GO:0005960 glycine cleavage complex
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G016000.1CmaCh02G016000.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000089Biotin/lipoyl attachmentPROFILEPS50968BIOTINYL_LIPOYLcoord: 56..138
score: 28
IPR002930Glycine cleavage system H-proteinHAMAPMF_00272GcvHcoord: 38..159
score: 28
IPR002930Glycine cleavage system H-proteinPANTHERPTHR11715GLYCINE CLEAVAGE SYSTEM H PROTEINcoord: 1..165
score: 1.4E
IPR002930Glycine cleavage system H-proteinPFAMPF01597GCV_Hcoord: 41..160
score: 4.7
IPR0030162-oxo acid dehydrogenase, lipoyl-binding sitePROSITEPS00189LIPOYLcoord: 81..110
scor
IPR011053Single hybrid motifunknownSSF51230Single hybrid motifcoord: 37..160
score: 3.38
IPR017453Glycine cleavage system H-protein, subgroupTIGRFAMsTIGR00527TIGR00527coord: 39..162
score: 3.1
NoneNo IPR availableGENE3DG3DSA:2.40.50.100coord: 40..161
score: 7.9
NoneNo IPR availablePANTHERPTHR11715:SF1GLYCINE CLEAVAGE SYSTEM H PROTEIN 3, MITOCHONDRIALcoord: 1..165
score: 1.4E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh02G016000Cucsa.313380Cucumber (Gy14) v1cgycmaB0870
CmaCh02G016000Csa3G903520Cucumber (Chinese Long) v2cmacuB601
CmaCh02G016000MELO3C003386Melon (DHL92) v3.5.1cmameB567
CmaCh02G016000CSPI03G46950Wild cucumber (PI 183967)cmacpiB607
CmaCh02G016000CmoCh19G004700Cucurbita moschata (Rifu)cmacmoB597
CmaCh02G016000CmoCh02G016410Cucurbita moschata (Rifu)cmacmoB619
CmaCh02G016000Cp4.1LG05g02010Cucurbita pepo (Zucchini)cmacpeB647
CmaCh02G016000Cp4.1LG15g03480Cucurbita pepo (Zucchini)cmacpeB612
CmaCh02G016000MELO3C003386.2Melon (DHL92) v3.6.1cmamedB647
CmaCh02G016000CsaV3_3G049390Cucumber (Chinese Long) v3cmacucB0717
CmaCh02G016000CsGy3G044350Cucumber (Gy14) v2cgybcmaB397
CmaCh02G016000Carg27402Silver-seed gourdcarcmaB0118
CmaCh02G016000Carg08823Silver-seed gourdcarcmaB1084
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh02G016000CmaCh19G004540Cucurbita maxima (Rimu)cmacmaB449
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh02G016000Cucurbita pepo (Zucchini)cmacpeB609
CmaCh02G016000Bottle gourd (USVL1VR-Ls)cmalsiB579
CmaCh02G016000Bottle gourd (USVL1VR-Ls)cmalsiB591
CmaCh02G016000Cucumber (Gy14) v2cgybcmaB398
CmaCh02G016000Melon (DHL92) v3.6.1cmamedB663
CmaCh02G016000Silver-seed gourdcarcmaB0990
CmaCh02G016000Cucumber (Chinese Long) v3cmacucB0718
CmaCh02G016000Watermelon (97103) v2cmawmbB611
CmaCh02G016000Watermelon (97103) v2cmawmbB662
CmaCh02G016000Wax gourdcmawgoB0708
CmaCh02G016000Wax gourdcmawgoB0731
CmaCh02G016000Cucurbita maxima (Rimu)cmacmaB347
CmaCh02G016000Cucurbita maxima (Rimu)cmacmaB503
CmaCh02G016000Cucumber (Gy14) v1cgycmaB0893
CmaCh02G016000Cucurbita moschata (Rifu)cmacmoB588
CmaCh02G016000Cucurbita moschata (Rifu)cmacmoB623
CmaCh02G016000Wild cucumber (PI 183967)cmacpiB608
CmaCh02G016000Cucumber (Chinese Long) v2cmacuB602
CmaCh02G016000Melon (DHL92) v3.5.1cmameB578
CmaCh02G016000Watermelon (Charleston Gray)cmawcgB509
CmaCh02G016000Watermelon (Charleston Gray)cmawcgB515
CmaCh02G016000Watermelon (97103) v1cmawmB547
CmaCh02G016000Watermelon (97103) v1cmawmB551