Cp4.1LG15g02140 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG15g02140
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionAT5g46770/MZA15_19
LocationCp4.1LG15 : 1840410 .. 1840733 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTGCCTATCATGCCAAGCCCTTCCAAGGACCCAATCTGATAGGGAGGATGAAGCTCAAGAGACCTCGTCTAGCGTAGGCAAATCGTGTTGCCTACACATATCACGACGGTGGTCGACCGAACTCACACCTCGGTCGTATGAGTCGATCAAGTCCAACAACAATATTGCCTCGTCTTTGCACCAGAAGGCTAAGAATCGTCGTATTCAGAGCGATTGTGGCCGGAAAGAACCGAGGTTGATTCGGTGCTCCGGGATGAGAAGGAATTGGAGCTTTGAGGAGTTGGGGTTGAGAGATCAAAAGAAAGGGAGGTTCCATTGA

mRNA sequence

ATGAATTGCCTATCATGCCAAGCCCTTCCAAGGACCCAATCTGATAGGGAGGATGAAGCTCAAGAGACCTCGTCTAGCGTAGGCAAATCGTGTTGCCTACACATATCACGACGGTGGTCGACCGAACTCACACCTCGGTCGTATGAGTCGATCAAGTCCAACAACAATATTGCCTCGTCTTTGCACCAGAAGGCTAAGAATCGTCGTATTCAGAGCGATTGTGGCCGGAAAGAACCGAGGTTGATTCGGTGCTCCGGGATGAGAAGGAATTGGAGCTTTGAGGAGTTGGGGTTGAGAGATCAAAAGAAAGGGAGGTTCCATTGA

Coding sequence (CDS)

ATGAATTGCCTATCATGCCAAGCCCTTCCAAGGACCCAATCTGATAGGGAGGATGAAGCTCAAGAGACCTCGTCTAGCGTAGGCAAATCGTGTTGCCTACACATATCACGACGGTGGTCGACCGAACTCACACCTCGGTCGTATGAGTCGATCAAGTCCAACAACAATATTGCCTCGTCTTTGCACCAGAAGGCTAAGAATCGTCGTATTCAGAGCGATTGTGGCCGGAAAGAACCGAGGTTGATTCGGTGCTCCGGGATGAGAAGGAATTGGAGCTTTGAGGAGTTGGGGTTGAGAGATCAAAAGAAAGGGAGGTTCCATTGA

Protein sequence

MNCLSCQALPRTQSDREDEAQETSSSVGKSCCLHISRRWSTELTPRSYESIKSNNNIASSLHQKAKNRRIQSDCGRKEPRLIRCSGMRRNWSFEELGLRDQKKGRFH
Homology
[Close]
BLAST of Cp4.1LG15g02140 vs. TrEMBL
Match: A0A0A0LEC0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G902280 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.1e-33
Identity = 72/111 (64.86%), Postives = 93/111 (83.78%), Query Frame = 1 

Query: 1   MNCLSCQALPRTQSDREDEAQETSSSVGKSCCLHISRRWSTELT-PRSYESIKSNNN--- 60
           MNCL+CQALPRTQSDRE+   ET S+ GKSCCL++ RRWSTELT P SY+SIK +++   
Sbjct: 3   MNCLTCQALPRTQSDRENRGYETPSTRGKSCCLYVPRRWSTELTTPSSYDSIKIDDDHHI 62

Query: 61  IASSLHQKAKNRRIQSDCGRKEPRLIRCSGMRRNWSFEELGLRDQKKGRFH 108
            +S++H+KA+ RR++S+CG  EP+L+R SGMRR+WSFE+LGLR QKKGRFH
Sbjct: 63  SSSNVHKKARTRRVRSECGGNEPKLVRSSGMRRDWSFEDLGLRGQKKGRFH 113

[Close]
BLAST of Cp4.1LG15g02140 vs. TrEMBL
Match: M5WF71_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021585mg PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-10
Identity = 49/117 (41.88%), Postives = 65/117 (55.56%), Query Frame = 1 

Query: 1   MNCLSCQALPRTQSDREDEAQETSSSV-GKSCCLHIS--RRWSTELTPRSYESIKSNNNI 60
           +NCL+CQ L RT S   D+          K CC++I+  R WS  LTP SYE I+ ++  
Sbjct: 3   LNCLTCQVLNRTNSSGSDKDNVCKDKAYRKICCVNINMERSWSGNLTPPSYEQIQESSMF 62

Query: 61  A---SSLHQKAKNRRIQSDCG-----RKEPRLIRCSGMRRNWSFEELG-LRDQKKGR 106
                 +     +RR+ S  G       EPRL+R SGMRR+WSFE L  LR++KKGR
Sbjct: 63  MPDKKKVKMSMGHRRLMSTGGVAYEGSTEPRLVRSSGMRRDWSFENLALLRNEKKGR 119

[Close]
BLAST of Cp4.1LG15g02140 vs. TrEMBL
Match: A0A067DPK3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046563mg PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.8e-10
Identity = 41/111 (36.94%), Postives = 61/111 (54.95%), Query Frame = 1 

Query: 1   MNCLSCQALPRTQSDREDEAQETSSSVGKSCCLHISRRWSTELTPRSYESIKSNNN---- 60
           +NCL+CQ+L RT SD+E         + K CC+ + R WS  LTP  YE I++  +    
Sbjct: 3   LNCLTCQSLQRTNSDKE---YSNGGPIKKLCCIKVERSWSGSLTPPPYEQIRNGAHGSMV 62

Query: 61  IASSLHQKAKNRRIQSDCG-----RKEPRLIRCSGMRRNWSFEELGLRDQK 103
           + +    K  +RR+ S          EP+L+R  GMRR+WSFE+L  R+ +
Sbjct: 63  VTAKKKVKKSHRRLNSTGAVAFTTDTEPKLVRSVGMRRDWSFEDLRQRNNE 110

[Close]
BLAST of Cp4.1LG15g02140 vs. TrEMBL
Match: V4SM01_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013401mg PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.8e-10
Identity = 41/111 (36.94%), Postives = 61/111 (54.95%), Query Frame = 1 

Query: 1   MNCLSCQALPRTQSDREDEAQETSSSVGKSCCLHISRRWSTELTPRSYESIKSNNN---- 60
           +NCL+CQ+L RT SD+E         + K CC+ + R WS  LTP  YE I++  +    
Sbjct: 3   LNCLTCQSLQRTNSDKE---YSNGGPIKKLCCIKVERSWSGSLTPPPYEQIRNGAHGSMV 62

Query: 61  IASSLHQKAKNRRIQSDCG-----RKEPRLIRCSGMRRNWSFEELGLRDQK 103
           + +    K  +RR+ S          EP+L+R  GMRR+WSFE+L  R+ +
Sbjct: 63  VTAKKKVKKSHRRLNSTGAVAFTTDTEPKLVRSVGMRRDWSFEDLRQRNNE 110

[Close]
BLAST of Cp4.1LG15g02140 vs. TrEMBL
Match: B9N2M8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s09080g PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.9e-10
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = 1 

Query: 1   MNCLSCQALPRTQSDREDEAQETSSSVGKSCCLHISRRWSTELTPRSYESIKSNNNIASS 60
           +NCL+CQ L R+ S+RE+  Q       K CC+ + R WS +L+P SY  +  N+N+ S+
Sbjct: 3   LNCLTCQDLQRSDSEREN-LQGKRHKNNKLCCIKVERSWSGKLSPPSYGQVGRNSNLFSA 62

Query: 61  LHQ-KAKNRRIQ-----SDCGRKEPRLIRCSGMRRNWSFEEL 97
               K + RR+      +  G  EP+L+R SGMRR+WSFE+L
Sbjct: 63  RRVIKKEPRRLNITGGVTFKGCDEPKLVRSSGMRRDWSFEDL 103

[Close]
BLAST of Cp4.1LG15g02140 vs. TAIR10
Match: AT5G46770.1 (AT5G46770.1 unknown protein)

HSP 1 Score: 69.3 bits (168), Expect = 1.6e-12
Identity = 45/127 (35.43%), Postives = 74/127 (58.27%), Query Frame = 1 

Query: 1   MNCLSCQALPRTQSDREDEAQ-------ETSSSVGKSCCLHI--SRRWSTELTPRSYESI 60
           +NCLSCQALPRT S+++ +         E ++ +GK+CC++    R WS  L+PR YE I
Sbjct: 3   LNCLSCQALPRTDSNKDVDLSGPGPPRVEINNVLGKTCCVNPIGGRNWSGNLSPRIYEKI 62

Query: 61  -KSNNNIASSLHQ--KAKNRRIQSDCGR---------KEPRLIRCSGMRRNWSFEEL--- 104
            +  +++A  + +  K  + R+    G          ++P+L+R +G+RRNWSFE L   
Sbjct: 63  GRPGSSLAHKMKKVKKIHHVRLSGPVGSSPSNVPTRPEQPKLVRSTGVRRNWSFENLRDQ 122

[Close]
BLAST of Cp4.1LG15g02140 vs. NCBI nr
Match: gi|700205252|gb|KGN60385.1| (hypothetical protein Csa_3G902280 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 5.9e-33
Identity = 72/111 (64.86%), Postives = 93/111 (83.78%), Query Frame = 1 

Query: 1   MNCLSCQALPRTQSDREDEAQETSSSVGKSCCLHISRRWSTELT-PRSYESIKSNNN--- 60
           MNCL+CQALPRTQSDRE+   ET S+ GKSCCL++ RRWSTELT P SY+SIK +++   
Sbjct: 3   MNCLTCQALPRTQSDRENRGYETPSTRGKSCCLYVPRRWSTELTTPSSYDSIKIDDDHHI 62

Query: 61  IASSLHQKAKNRRIQSDCGRKEPRLIRCSGMRRNWSFEELGLRDQKKGRFH 108
            +S++H+KA+ RR++S+CG  EP+L+R SGMRR+WSFE+LGLR QKKGRFH
Sbjct: 63  SSSNVHKKARTRRVRSECGGNEPKLVRSSGMRRDWSFEDLGLRGQKKGRFH 113

[Close]
BLAST of Cp4.1LG15g02140 vs. NCBI nr
Match: gi|659132028|ref|XP_008465978.1| (PREDICTED: uncharacterized protein LOC103503546 [Cucumis melo])

HSP 1 Score: 131.3 bits (329), Expect = 9.8e-28
Identity = 73/111 (65.77%), Postives = 88/111 (79.28%), Query Frame = 1 

Query: 1   MNCLSCQALPRTQSDREDE-AQETSSSVGKSCCLHISRRWSTELTPRSYESIKSNNNIAS 60
           MNCL+CQALPRTQSDRE+    ET SS GKSCCL++ RRWS ELTP  +  IK + +I+S
Sbjct: 3   MNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTP--HNPIKLDEDISS 62

Query: 61  S-LHQKAKNRRIQS-DCGRKEPRLIRCSGMRRNWSFEELGLRD-QKKGRFH 108
           S LH+K ++RR +S D G  EPRL+R SGMRR+WSFE+LGLRD QKKGRFH
Sbjct: 63  SDLHKKPRSRRARSGDYGGNEPRLVRSSGMRRDWSFEDLGLRDHQKKGRFH 111

[Close]
BLAST of Cp4.1LG15g02140 vs. NCBI nr
Match: gi|645265650|ref|XP_008238249.1| (PREDICTED: uncharacterized protein LOC103336898 [Prunus mume])

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-10
Identity = 49/117 (41.88%), Postives = 66/117 (56.41%), Query Frame = 1 

Query: 1   MNCLSCQALPRTQSDREDEAQ-ETSSSVGKSCCLHIS--RRWSTELTPRSYESIKSNNNI 60
           +NCL+CQ L RT S   D+       +  K CC++I+  R WS  LTP SYE I+ ++  
Sbjct: 3   LNCLTCQVLNRTNSSGSDKDNVRKDKAYRKLCCVNINMERSWSGNLTPPSYEQIQESSMF 62

Query: 61  ASS---LHQKAKNRRIQSDCG-----RKEPRLIRCSGMRRNWSFEELG-LRDQKKGR 106
                 +     +RR+ S  G       EPRL+R SGMRR+WSFE L  LR++KKGR
Sbjct: 63  MQDKKKVKMSLGHRRLMSTGGVAYEGSTEPRLVRSSGMRRDWSFENLALLRNEKKGR 119

[Close]
BLAST of Cp4.1LG15g02140 vs. NCBI nr
Match: gi|595858413|ref|XP_007210742.1| (hypothetical protein PRUPE_ppa021585mg [Prunus persica])

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-10
Identity = 49/117 (41.88%), Postives = 65/117 (55.56%), Query Frame = 1 

Query: 1   MNCLSCQALPRTQSDREDEAQETSSSV-GKSCCLHIS--RRWSTELTPRSYESIKSNNNI 60
           +NCL+CQ L RT S   D+          K CC++I+  R WS  LTP SYE I+ ++  
Sbjct: 3   LNCLTCQVLNRTNSSGSDKDNVCKDKAYRKICCVNINMERSWSGNLTPPSYEQIQESSMF 62

Query: 61  A---SSLHQKAKNRRIQSDCG-----RKEPRLIRCSGMRRNWSFEELG-LRDQKKGR 106
                 +     +RR+ S  G       EPRL+R SGMRR+WSFE L  LR++KKGR
Sbjct: 63  MPDKKKVKMSMGHRRLMSTGGVAYEGSTEPRLVRSSGMRRDWSFENLALLRNEKKGR 119

[Close]
BLAST of Cp4.1LG15g02140 vs. NCBI nr
Match: gi|802622635|ref|XP_012076249.1| (PREDICTED: uncharacterized protein LOC105637409 [Jatropha curcas])

HSP 1 Score: 72.8 bits (177), Expect = 4.1e-10
Identity = 44/107 (41.12%), Postives = 63/107 (58.88%), Query Frame = 1 

Query: 1   MNCLSCQALPRTQSDREDEAQETSSSVGKSCCLHISRRWSTELTPRSYESI-KSNNNIAS 60
           +NCL+CQ + R  S  E + + TS    K CCL + R WS  L   +YE I KS+  IA 
Sbjct: 3   LNCLACQNMQRNNSGTEYDRETTSE---KLCCLPVERSWSGNLGSPTYEKIGKSSMPIAK 62

Query: 61  SL---HQKAKNRRIQSDCGRKEPRLIRCSGMRRNWSFEELGLRDQKK 104
            +   H++  +  I    G  EP+L+R SGMRR+WSFE+L  RD+++
Sbjct: 63  KIKKEHRRLNSTGILGFKGIDEPKLVRSSGMRRDWSFEDLKERDEER 106

The following BLAST results are available for this feature:
BLAST of Cp4.1LG15g02140 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG15g02140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LEC0_CUCSA4.1e-3364.86Uncharacterized protein OS=Cucumis sativus GN=Csa_3G902280 PE=4 SV=1[more]
M5WF71_PRUPE1.3e-1041.88Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021585mg PE=4 SV=1[more]
A0A067DPK3_CITSI3.8e-1036.94Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046563mg PE=4 SV=1[more]
V4SM01_9ROSI3.8e-1036.94Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013401mg PE=4 SV=1[more]
B9N2M8_POPTR4.9e-1041.18Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s09080g PE=4 SV=1[more]
BLAST of Cp4.1LG15g02140 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G46770.11.6e-1235.43 unknown protein[more]
BLAST of Cp4.1LG15g02140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205252|gb|KGN60385.1|5.9e-3364.86hypothetical protein Csa_3G902280 [Cucumis sativus][more]
gi|659132028|ref|XP_008465978.1|9.8e-2865.77PREDICTED: uncharacterized protein LOC103503546 [Cucumis melo][more]
gi|645265650|ref|XP_008238249.1|1.1e-1041.88PREDICTED: uncharacterized protein LOC103336898 [Prunus mume][more]
gi|595858413|ref|XP_007210742.1|1.9e-1041.88hypothetical protein PRUPE_ppa021585mg [Prunus persica][more]
gi|802622635|ref|XP_012076249.1|4.1e-1041.12PREDICTED: uncharacterized protein LOC105637409 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g02140.1Cp4.1LG15g02140.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36019FAMILY NOT NAMEDcoord: 1..107
score: 2.7
NoneNo IPR availablePANTHERPTHR36019:SF1SUBFAMILY NOT NAMEDcoord: 1..107
score: 2.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG15g02140Cucsa.313100Cucumber (Gy14) v1cgycpeB0817
Cp4.1LG15g02140CmaCh19G002370Cucurbita maxima (Rimu)cmacpeB522
Cp4.1LG15g02140CmoCh19G002520Cucurbita moschata (Rifu)cmocpeB481
Cp4.1LG15g02140Cla016198Watermelon (97103) v1cpewmB235
Cp4.1LG15g02140Csa3G902280Cucumber (Chinese Long) v2cpecuB239
Cp4.1LG15g02140MELO3C013852Melon (DHL92) v3.5.1cpemeB240
Cp4.1LG15g02140MELO3C003411Melon (DHL92) v3.5.1cpemeB232
Cp4.1LG15g02140CSPI03G46700Wild cucumber (PI 183967)cpecpiB243
Cp4.1LG15g02140LsiUNG000400Bottle gourd (USVL1VR-Ls)cpelsiB190
Cp4.1LG15g02140MELO3C013852.2Melon (DHL92) v3.6.1cpemedB281
Cp4.1LG15g02140MELO3C003411.2Melon (DHL92) v3.6.1cpemedB271
Cp4.1LG15g02140CsaV3_3G049160Cucumber (Chinese Long) v3cpecucB0298
Cp4.1LG15g02140Bhi05G000337Wax gourdcpewgoB0319
Cp4.1LG15g02140CsGy3G044140Cucumber (Gy14) v2cgybcpeB332
Cp4.1LG15g02140Carg23383Silver-seed gourdcarcpeB1335
Cp4.1LG15g02140Carg24521Silver-seed gourdcarcpeB1344
Cp4.1LG15g02140Carg26196Silver-seed gourdcarcpeB0703
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG15g02140Cucurbita pepo (Zucchini)cpecpeB231
Cp4.1LG15g02140Cucurbita pepo (Zucchini)cpecpeB268
Cp4.1LG15g02140Cucurbita pepo (Zucchini)cpecpeB273
Cp4.1LG15g02140Cucurbita pepo (Zucchini)cpecpeB285
Cp4.1LG15g02140Cucumber (Gy14) v1cgycpeB0848
Cp4.1LG15g02140Cucurbita maxima (Rimu)cmacpeB120
Cp4.1LG15g02140Cucurbita maxima (Rimu)cmacpeB349
Cp4.1LG15g02140Cucurbita maxima (Rimu)cmacpeB615
Cp4.1LG15g02140Cucurbita maxima (Rimu)cmacpeB819
Cp4.1LG15g02140Cucurbita moschata (Rifu)cmocpeB094
Cp4.1LG15g02140Cucurbita moschata (Rifu)cmocpeB310
Cp4.1LG15g02140Cucurbita moschata (Rifu)cmocpeB564
Cp4.1LG15g02140Cucurbita moschata (Rifu)cmocpeB773
Cp4.1LG15g02140Wild cucumber (PI 183967)cpecpiB245
Cp4.1LG15g02140Cucumber (Chinese Long) v2cpecuB241
Cp4.1LG15g02140Bottle gourd (USVL1VR-Ls)cpelsiB206
Cp4.1LG15g02140Bottle gourd (USVL1VR-Ls)cpelsiB218
Cp4.1LG15g02140Watermelon (Charleston Gray)cpewcgB216
Cp4.1LG15g02140Watermelon (Charleston Gray)cpewcgB227
Cp4.1LG15g02140Watermelon (97103) v1cpewmB249
Cp4.1LG15g02140Cucumber (Gy14) v2cgybcpeB334
Cp4.1LG15g02140Silver-seed gourdcarcpeB1094
Cp4.1LG15g02140Cucumber (Chinese Long) v3cpecucB0300
Cp4.1LG15g02140Wax gourdcpewgoB0312