Carg23383 (gene) Silver-seed gourd

Overview
NameCarg23383
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionPlant/MZA15-19 protein, putative
LocationCucurbita_argyrosperma_scaffold_184 : 72009 .. 72359 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCTGAATTGCCTCTCCTGTCAACTCTTCTTGCAGAGATCGGACTCCGACAAAGACCTCGAGCAGCATGAATACTTCACCGATCAGGCCAAGTCGCCGGACAGAAGCTGGTCGGGAAACCTGTCGTTTCGCCCTCCCACTCGCCAAAACAGCGACGGGTTTCGGGTCCGGACGGAGAATAAGGTGGCGCCGATGGGCCACCGCCGTCTTCACAGCACTGGCGCCGTCGCTTTCGGCGGCCCTGGTAAGGAGCCGAGGCTGATTAGAAGCGCGGGGATGAGGAGGGATTGGAGCTTTGAGGATCTTCGAGCCATCCGAGAGGATAAGGAATCATCTCCCAATTCCTAA

mRNA sequence

ATGAGTCTGAATTGCCTCTCCTGTCAACTCTTCTTGCAGAGATCGGACTCCGACAAAGACCTCGAGCAGCATGAATACTTCACCGATCAGGCCAAGTCGCCGGACAGAAGCTGGTCGGGAAACCTGTCGTTTCGCCCTCCCACTCGCCAAAACAGCGACGGGTTTCGGGTCCGGACGGAGAATAAGGTGGCGCCGATGGGCCACCGCCGTCTTCACAGCACTGGCGCCGTCGCTTTCGGCGGCCCTGGTAAGGAGCCGAGGCTGATTAGAAGCGCGGGGATGAGGAGGGATTGGAGCTTTGAGGATCTTCGAGCCATCCGAGAGGATAAGGAATCATCTCCCAATTCCTAA

Coding sequence (CDS)

ATGAGTCTGAATTGCCTCTCCTGTCAACTCTTCTTGCAGAGATCGGACTCCGACAAAGACCTCGAGCAGCATGAATACTTCACCGATCAGGCCAAGTCGCCGGACAGAAGCTGGTCGGGAAACCTGTCGTTTCGCCCTCCCACTCGCCAAAACAGCGACGGGTTTCGGGTCCGGACGGAGAATAAGGTGGCGCCGATGGGCCACCGCCGTCTTCACAGCACTGGCGCCGTCGCTTTCGGCGGCCCTGGTAAGGAGCCGAGGCTGATTAGAAGCGCGGGGATGAGGAGGGATTGGAGCTTTGAGGATCTTCGAGCCATCCGAGAGGATAAGGAATCATCTCCCAATTCCTAA

Protein sequence

MSLNCLSCQLFLQRSDSDKDLEQHEYFTDQAKSPDRSWSGNLSFRPPTRQNSDGFRVRTENKVAPMGHRRLHSTGAVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREDKESSPNS
Homology
[Close]
BLAST of Carg23383 vs. NCBI nr
Match: XP_022952265.1 (uncharacterized protein LOC111454968 [Cucurbita moschata])

HSP 1 Score: 238.8 bits (608), Expect = 9.2e-60
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MSLNCLSCQLFLQRSDSDKDLEQHEYFTDQAKSPDRSWSGNLSFRPPTRQNSDGFRVRTE 60
           MSLNCLSCQLFLQRSDSDKDLEQHEYFTDQAKSPDRSWSGNLSFRPPTRQNSDGFRVRTE
Sbjct: 1   MSLNCLSCQLFLQRSDSDKDLEQHEYFTDQAKSPDRSWSGNLSFRPPTRQNSDGFRVRTE 60

Query: 61  NKVAPMGHRRLHSTGAVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREDKESSPNS 117
           NKVAPMGHRRLHSTGAVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREDKESSPNS
Sbjct: 61  NKVAPMGHRRLHSTGAVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREDKESSPNS 116

[Close]
BLAST of Carg23383 vs. NCBI nr
Match: XP_023539506.1 (uncharacterized protein LOC111800149 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.0 bits (598), Expect = 1.3e-58
Identity = 114/116 (98.28%), Postives = 115/116 (99.14%), Query Frame = 0 

Query: 1   MSLNCLSCQLFLQRSDSDKDLEQHEYFTDQAKSPDRSWSGNLSFRPPTRQNSDGFRVRTE 60
           MSLNCLSCQLFLQRSDSDKDLEQHEYFTDQAKSPDRSWSGNLSFRPPTRQNSDGFRVRTE
Sbjct: 1   MSLNCLSCQLFLQRSDSDKDLEQHEYFTDQAKSPDRSWSGNLSFRPPTRQNSDGFRVRTE 60

Query: 61  NKVAPMGHRRLHSTGAVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREDKESSPNS 117
           NKVAP GHRRLHSTGAVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIRE+KESSPNS
Sbjct: 61  NKVAPTGHRRLHSTGAVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREEKESSPNS 116

[Close]
BLAST of Carg23383 vs. NCBI nr
Match: XP_023007608.1 (uncharacterized protein LOC111500186 [Cucurbita maxima])

HSP 1 Score: 123.6 bits (309), Expect = 4.3e-25
Identity = 64/112 (57.14%), Postives = 81/112 (72.32%), Query Frame = 0 

Query: 1   MSLNCLSCQLFLQRSDS--DKDLEQHEYFTDQAKSPDRSWSGNLSFRPPTRQNSDGFRVR 60
           M+LNCLSCQL LQR+DS  D D +   Y++ Q +   RSWSGNLSFRPP R   +  R  
Sbjct: 1   MTLNCLSCQL-LQRTDSERDPDPQLQNYYSGQIEPSGRSWSGNLSFRPPDRPKKEALRAL 60

Query: 61  TENKVAPMGHRRLHSTGAVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREDK 111
            E++  P+  RRLHS+G ++ G   KEP+L+RS+GMRRDWSFEDLRAIRE+K
Sbjct: 61  PEDQAPPVAPRRLHSSGPISLG--SKEPKLVRSSGMRRDWSFEDLRAIREEK 109

[Close]
BLAST of Carg23383 vs. NCBI nr
Match: XP_023553065.1 (uncharacterized protein LOC111810575 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122.1 bits (305), Expect = 1.3e-24
Identity = 64/112 (57.14%), Postives = 81/112 (72.32%), Query Frame = 0 

Query: 1   MSLNCLSCQLFLQRSDS--DKDLEQHEYFTDQAKSPDRSWSGNLSFRPPTRQNSDGFRVR 60
           M+LNCLSCQL LQR+DS  D D +   Y++ Q +   RSWSGNLSFRPP R   +  R  
Sbjct: 1   MTLNCLSCQL-LQRTDSERDPDPQLQNYYSVQIEPSGRSWSGNLSFRPPDRPKKEPLRAL 60

Query: 61  TENKVAPMGHRRLHSTGAVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREDK 111
            E++  P+  RRLHS+G ++ G   KEP+L+RS+GMRRDWSFEDLRAIRE+K
Sbjct: 61  PEDQAPPVAPRRLHSSGPISLG--SKEPKLVRSSGMRRDWSFEDLRAIREEK 109

[Close]
BLAST of Carg23383 vs. NCBI nr
Match: XP_008448684.1 (PREDICTED: uncharacterized protein LOC103490783 [Cucumis melo])

HSP 1 Score: 118.6 bits (296), Expect = 1.4e-23
Identity = 73/120 (60.83%), Postives = 85/120 (70.83%), Query Frame = 0 

Query: 1   MSLNCLSCQLFLQRSDSDKDLE---QHEYFTDQAKSPDRSWSGNLSFRPPTRQNSDG-FR 60
           MSLNCLSCQL LQR+DS++  +   Q  Y +D+     RSWSGNLS     RQN  G FR
Sbjct: 1   MSLNCLSCQL-LQRTDSERHRDRQIQTYYTSDEFDPSQRSWSGNLSL----RQNRGGVFR 60

Query: 61  VRTENKVAPMGHRRLHSTGAVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREDKESSPNS 117
              +NKVAP+ HRR     AV+FG  GKEPRL+RS+GMRRDWSFEDLR IRE+KE SPNS
Sbjct: 61  GMADNKVAPVCHRR-----AVSFG--GKEPRLVRSSGMRRDWSFEDLRTIREEKEPSPNS 108

[Close]
BLAST of Carg23383 vs. TAIR10
Match: AT2G35215.1 (unknown protein)

HSP 1 Score: 68.2 bits (165), Expect = 3.9e-12
Identity = 46/107 (42.99%), Postives = 62/107 (57.94%), Query Frame = 0 

Query: 1   MSLNCLSCQLFLQRSDSDKDLEQHEYFTDQAKSPDRSWSGNL---SFRPPTRQNSDGFRV 60
           MSLNCL+C + LQR+DSD+D+   +         D S+  N    +F    R  S    V
Sbjct: 1   MSLNCLACHI-LQRTDSDRDMGSRK---------DSSFKENFATSAFEKMVRNRSSLPVV 60

Query: 61  RTENKVAPMGHRRLHSTGAVAFGGPGKEPRLIRSAGMRRDWSFEDLR 105
           R  NK    GHRRL+S   + + G   EP+L+RS+G+RRDWSFEDL+
Sbjct: 61  RRVNK----GHRRLYSADIMVY-GELDEPKLVRSSGIRRDWSFEDLK 92

[Close]
BLAST of Carg23383 vs. TAIR10
Match: AT5G46770.1 (unknown protein)

HSP 1 Score: 53.9 bits (128), Expect = 7.6e-08
Identity = 46/121 (38.02%), Postives = 65/121 (53.72%), Query Frame = 0 

Query: 1   MSLNCLSCQLFLQRSDSDKDLE-------QHEYFTDQAKS------PDRSWSGNLSFRPP 60
           MSLNCLSCQ  L R+DS+KD++       + E      K+        R+WSGNLS R  
Sbjct: 1   MSLNCLSCQA-LPRTDSNKDVDLSGPGPPRVEINNVLGKTCCVNPIGGRNWSGNLSPRIY 60

Query: 61  TRQNSDGFRVRTE-NKVAPMGHRRLHS-TGAVAFGGPGK--EPRLIRSAGMRRDWSFEDL 105
            +    G  +  +  KV  + H RL    G+     P +  +P+L+RS G+RR+WSFE+L
Sbjct: 61  EKIGRPGSSLAHKMKKVKKIHHVRLSGPVGSSPSNVPTRPEQPKLVRSTGVRRNWSFENL 120

[Close]
BLAST of Carg23383 vs. TrEMBL
Match: tr|A0A1S3BJN6|A0A1S3BJN6_CUCME (uncharacterized protein LOC103490783 OS=Cucumis melo OX=3656 GN=LOC103490783 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 9.2e-24
Identity = 73/120 (60.83%), Postives = 85/120 (70.83%), Query Frame = 0 

Query: 1   MSLNCLSCQLFLQRSDSDKDLE---QHEYFTDQAKSPDRSWSGNLSFRPPTRQNSDG-FR 60
           MSLNCLSCQL LQR+DS++  +   Q  Y +D+     RSWSGNLS     RQN  G FR
Sbjct: 1   MSLNCLSCQL-LQRTDSERHRDRQIQTYYTSDEFDPSQRSWSGNLSL----RQNRGGVFR 60

Query: 61  VRTENKVAPMGHRRLHSTGAVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREDKESSPNS 117
              +NKVAP+ HRR     AV+FG  GKEPRL+RS+GMRRDWSFEDLR IRE+KE SPNS
Sbjct: 61  GMADNKVAPVCHRR-----AVSFG--GKEPRLVRSSGMRRDWSFEDLRTIREEKEPSPNS 108

[Close]
BLAST of Carg23383 vs. TrEMBL
Match: tr|A0A0A0L198|A0A0A0L198_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G011635 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.0e-23
Identity = 71/123 (57.72%), Postives = 85/123 (69.11%), Query Frame = 0 

Query: 1   MSLNCLSCQLFLQRSDSD--KDLEQHEYFT-DQAKSPDRSWSGNLSFRP----PTRQNSD 60
           MSLNCLSCQ+ LQR+DS+  +D +   Y+T D+  S +RSWSGNL  RP           
Sbjct: 1   MSLNCLSCQI-LQRTDSERHRDRQVQTYYTSDEFNSSERSWSGNLCLRPNRXXXXXXXXX 60

Query: 61  GFRVRTENKVAPMGHRRLHSTGAVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREDKESS 117
                 +NKVAP+GHRR     AV+FG  GKEPRLIRS+GMRRDWSFEDLRAIRE+K+ S
Sbjct: 61  XXXXMADNKVAPIGHRR-----AVSFG--GKEPRLIRSSGMRRDWSFEDLRAIREEKQPS 115

[Close]
BLAST of Carg23383 vs. TrEMBL
Match: tr|A0A1Q3AQJ8|A0A1Q3AQJ8_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_01572 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15
Identity = 59/108 (54.63%), Postives = 70/108 (64.81%), Query Frame = 0 

Query: 1   MSLNCLSCQLFLQRSDSDKDLE---QHEYFTDQAKSPDR-SWSGNLSFRPPTRQNSDGFR 60
           MSL+CLSCQ+ LQR++SD +LE   +  Y        +R SWSGNL+  PP  +     +
Sbjct: 1   MSLDCLSCQV-LQRTNSDNELEHVPRKPYRETCFAMVERGSWSGNLNPPPPPYEKMRSGK 60

Query: 61  VRTENKVAPMGHRRLHSTGAVAFGGPGKEPRLIRSAGMRRDWSFEDLR 105
                KV   GHRRLHSTG VAF G G EPRL+RS GMRRDWSFEDLR
Sbjct: 61  SMLIEKV-KKGHRRLHSTGTVAFEGSG-EPRLVRSCGMRRDWSFEDLR 105

[Close]
BLAST of Carg23383 vs. TrEMBL
Match: tr|A0A2P5B977|A0A2P5B977_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_259480 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.3e-14
Identity = 57/116 (49.14%), Postives = 68/116 (58.62%), Query Frame = 0 

Query: 1   MSLNCLSCQLFLQRSDS----DKDLEQHEYFTDQAKSPDRSWSGNLSFRPPTRQ--NSDG 60
           MSLNCLSCQ+ LQR+DS    D  +E++ Y      +  RSWSGNL    P ++   S  
Sbjct: 1   MSLNCLSCQV-LQRTDSDVERDNSVEKYSYEKLLFLNVGRSWSGNLVAPSPCKELIKSGS 60

Query: 61  FRVRTENKVAPMGHRRLHSTGAVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREDK 111
             V  +     +GHRRL STGA  F G   EPRL RS GMRRDWSFE+LR   E K
Sbjct: 61  MLVSPKKAKGTLGHRRLQSTGAFIFEGT-TEPRLARSCGMRRDWSFENLRQRDEKK 114

[Close]
BLAST of Carg23383 vs. TrEMBL
Match: tr|A0A061G340|A0A061G340_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_015716 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 6.6e-14
Identity = 61/120 (50.83%), Postives = 75/120 (62.50%), Query Frame = 0 

Query: 1   MSLNCLSCQLFLQRSDSDKDLEQHEYFTDQAK----SPDRSWSGNLSFRPPTRQNSDGFR 60
           MSLNCL+CQ+ LQR+DS+KD +  +   D  K      DRSWSGNLS  P   +     +
Sbjct: 1   MSLNCLTCQV-LQRTDSNKDRDYGKE-KDSRKFCCIRVDRSWSGNLS--PAAYE-----Q 60

Query: 61  VRTENKVAP--MGHRRLHST----GAVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREDK 111
           +R E    P   GHRRL++     GAVAF   G EPRL+RS GMRRDWSFEDLR  R++K
Sbjct: 61  IRNEPMPVPTRKGHRRLNTIDTTFGAVAFEADG-EPRLVRSCGMRRDWSFEDLRGTRDEK 110

The following BLAST results are available for this feature:
BLAST of Carg23383 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022952265.19.2e-60100.00uncharacterized protein LOC111454968 [Cucurbita moschata][more]
XP_023539506.11.3e-5898.28uncharacterized protein LOC111800149 [Cucurbita pepo subsp. pepo][more]
XP_023007608.14.3e-2557.14uncharacterized protein LOC111500186 [Cucurbita maxima][more]
XP_023553065.11.3e-2457.14uncharacterized protein LOC111810575 [Cucurbita pepo subsp. pepo][more]
XP_008448684.11.4e-2360.83PREDICTED: uncharacterized protein LOC103490783 [Cucumis melo][more]
BLAST of Carg23383 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G35215.13.9e-1242.99unknown protein[more]
AT5G46770.17.6e-0838.02unknown protein[more]
BLAST of Carg23383 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg23383 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BJN6|A0A1S3BJN6_CUCME9.2e-2460.83uncharacterized protein LOC103490783 OS=Cucumis melo OX=3656 GN=LOC103490783 PE=... [more]
tr|A0A0A0L198|A0A0A0L198_CUCSA2.0e-2357.72Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G011635 PE=4 SV=1[more]
tr|A0A1Q3AQJ8|A0A1Q3AQJ8_CEPFO1.2e-1554.63Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_01572 PE=4... [more]
tr|A0A2P5B977|A0A2P5B977_PARAD2.3e-1449.14Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_259480 PE... [more]
tr|A0A061G340|A0A061G340_THECC6.6e-1450.83Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_015716 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg23383-RACarg23383-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..88
NoneNo IPR availablePANTHERPTHR36019FAMILY NOT NAMEDcoord: 1..110

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg23383Cla016198Watermelon (97103) v1carwmB0964
Carg23383Cla008804Watermelon (97103) v1carwmB0966
Carg23383Csa3G902280Cucumber (Chinese Long) v2carcuB0979
Carg23383MELO3C003411Melon (DHL92) v3.5.1carmeB0942
Carg23383MELO3C013852Melon (DHL92) v3.5.1carmeB0943
Carg23383ClCG10G001600Watermelon (Charleston Gray)carwcgB0941
Carg23383CSPI03G01670Wild cucumber (PI 183967)carcpiB1001
Carg23383CSPI03G46700Wild cucumber (PI 183967)carcpiB1002
Carg23383Cucsa.313100Cucumber (Gy14) v1carcgyB1082
Carg23383CmaCh06G006490Cucurbita maxima (Rimu)carcmaB1332
Carg23383CmaCh16G011560Cucurbita maxima (Rimu)carcmaB1329
Carg23383CmoCh06G006580Cucurbita moschata (Rifu)carcmoB1294
Carg23383CmoCh16G012070Cucurbita moschata (Rifu)carcmoB1291
Carg23383LsiUNG000400Bottle gourd (USVL1VR-Ls)carlsiB880
Carg23383Lsi07G011990Bottle gourd (USVL1VR-Ls)carlsiB882
Carg23383Cp4.1LG15g02140Cucurbita pepo (Zucchini)carcpeB1335
Carg23383MELO3C013852.2Melon (DHL92) v3.6.1carmedB0949
Carg23383MELO3C003411.2Melon (DHL92) v3.6.1carmedB0948
Carg23383CsaV3_3G001720Cucumber (Chinese Long) v3carcucB1006
Carg23383CsaV3_3G049160Cucumber (Chinese Long) v3carcucB1007
Carg23383Cla97C10G186230Watermelon (97103) v2carwmbB1015
Carg23383Cla97C09G174740Watermelon (97103) v2carwmbB1016
Carg23383Bhi05G000337Wax gourdcarwgoB1131
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg23383Carg26196Silver-seed gourdcarcarB486
The following block(s) are covering this gene:
GeneOrganismBlock
Carg23383Wax gourdcarwgoB1128
Carg23383Silver-seed gourdcarcarB611
Carg23383Silver-seed gourdcarcarB650
Carg23383Cucumber (Gy14) v2carcgybB0951
Carg23383Cucumber (Gy14) v2carcgybB0952
Carg23383Cucumber (Gy14) v1carcgyB1083
Carg23383Cucurbita maxima (Rimu)carcmaB1330
Carg23383Cucurbita maxima (Rimu)carcmaB1331
Carg23383Cucurbita moschata (Rifu)carcmoB1292
Carg23383Cucurbita moschata (Rifu)carcmoB1293
Carg23383Cucurbita pepo (Zucchini)carcpeB1334
Carg23383Cucurbita pepo (Zucchini)carcpeB1336
Carg23383Cucurbita pepo (Zucchini)carcpeB1337
Carg23383Cucumber (Chinese Long) v2carcuB0978
Carg23383Watermelon (Charleston Gray)carwcgB0939