CSPI03G46700 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G46700
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Pollen-specific small CDPK-interacting protein 1
Location	Chr3 : 39871115 .. 39871903 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAACTCAAACAACAATAAGTTTGGTTGTTGTTCTCCAACCCAAAAGCCAACCTTGAAACCCTATGCATATGGAAATTCACTATATTTCCAATTCATAATTCTCATGAATCATGTCTCCATTCTCTCTTAATCTCTCTCAATCACTCTCTCTCTTTATTATATACTCCAAAAGAAGCTCCATAAAATTACAACAATACAATAATCATTACTGTTATTGAGTAAACTTCAATTCTTTTTTGGTTTAATGACCATGAACTGCCTTACATGCCAAGCCCTTCCAAGAACCCAATCTGATAGGGAAAATCGTGGTTACCAAACCCCCTCTACTAGAGGTAAATCATGTTGTCTATATGTTCCCCGGAGGTGGTCGACCGAGTTGACTACCCCGTCATCCTACGATTCTATCAAAATCGATGATGATCATCATATTAGCTCTTCTAATGTTCATAAGAAGGCTAGGACTCGTCGTGTTCGTAGTGAATGCGGTGGAAACGAGCCGAAGTTGGTGAGAAGTTCGGGAATGAGAAGGGATTGGAGTTTTGAGGATTTGGGATTGAGAGGTCAAAAGAAAGGGAGATTCCATTGAGGTTCCATTTTTGTTCATTTTCCCCCCCCTCTCTCTCATGATCTCTTTGCTTCTCTCTCCTTCTCTTTCTTTTTTTTTTATTCTCATTCATGTGTTTGTAATTTTCTTGTGTTTATAATTCATTTTAAGTTTTAATGTAAATTGGGAGGTGAATAATAATGAAGAACTTAAGGTGGGAAATGAGATTTTTATTGATTGAT

mRNA sequence

ATGACCATGAACTGCCTTACATGCCAAGCCCTTCCAAGAACCCAATCTGATAGGGAAAATCGTGGTTACCAAACCCCCTCTACTAGAGGTAAATCATGTTGTCTATATGTTCCCCGGAGGTGGTCGACCGAGTTGACTACCCCGTCATCCTACGATTCTATCAAAATCGATGATGATCATCATATTAGCTCTTCTAATGTTCATAAGAAGGCTAGGACTCGTCGTGTTCGTAGTGAATGCGGTGGAAACGAGCCGAAGTTGGTGAGAAGTTCGGGAATGAGAAGGGATTGGAGTTTTGAGGATTTGGGATTGAGAGGTCAAAAGAAAGGGAGATTCCATTGA

Coding sequence (CDS)

ATGACCATGAACTGCCTTACATGCCAAGCCCTTCCAAGAACCCAATCTGATAGGGAAAATCGTGGTTACCAAACCCCCTCTACTAGAGGTAAATCATGTTGTCTATATGTTCCCCGGAGGTGGTCGACCGAGTTGACTACCCCGTCATCCTACGATTCTATCAAAATCGATGATGATCATCATATTAGCTCTTCTAATGTTCATAAGAAGGCTAGGACTCGTCGTGTTCGTAGTGAATGCGGTGGAAACGAGCCGAAGTTGGTGAGAAGTTCGGGAATGAGAAGGGATTGGAGTTTTGAGGATTTGGGATTGAGAGGTCAAAAGAAAGGGAGATTCCATTGA

Homology

[Close]

BLAST of CSPI03G46700 vs. TrEMBL
Match: A0A0A0LEC0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G902280 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 5.5e-60
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 1


Query: 1   MTMNCLTCQALPRTQSDRENRGYQTPSTRGKSCCLYVPRRWSTELTTPSSYDSIKIDDDH 60
           MTMNCLTCQALPRTQSDRENRGY+TPSTRGKSCCLYVPRRWSTELTTPSSYDSIKIDDDH
Sbjct: 1   MTMNCLTCQALPRTQSDRENRGYETPSTRGKSCCLYVPRRWSTELTTPSSYDSIKIDDDH 60

Query: 61  HISSSNVHKKARTRRVRSECGGNEPKLVRSSGMRRDWSFEDLGLRGQKKGRFH 114
           HISSSNVHKKARTRRVRSECGGNEPKLVRSSGMRRDWSFEDLGLRGQKKGRFH
Sbjct: 61  HISSSNVHKKARTRRVRSECGGNEPKLVRSSGMRRDWSFEDLGLRGQKKGRFH 113

[Close]

BLAST of CSPI03G46700 vs. TrEMBL
Match: V4SM01_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013401mg PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.3e-12
Identity = 51/115 (44.35%), Postives = 60/115 (52.17%), Query Frame = 1


Query: 1   MTMNCLTCQALPRTQSDRENRGYQTPSTRGKSCCLYVPRRWSTELTTPSSYDSIKIDDDH 60
           MT+NCLTCQ+L RT SD+E   Y       K CC+ V R WS  LT P  Y+ I+ +  H
Sbjct: 1   MTLNCLTCQSLQRTNSDKE---YSNGGPIKKLCCIKVERSWSGSLTPPP-YEQIR-NGAH 60

Query: 61  HISSSNVHKKARTRRVRSECGG-------NEPKLVRSSGMRRDWSFEDLGLRGQK 109
                   KK +    R    G        EPKLVRS GMRRDWSFEDL  R  +
Sbjct: 61  GSMVVTAKKKVKKSHRRLNSTGAVAFTTDTEPKLVRSVGMRRDWSFEDLRQRNNE 110

[Close]

BLAST of CSPI03G46700 vs. TrEMBL
Match: A0A067DPK3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046563mg PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.3e-12
Identity = 51/115 (44.35%), Postives = 60/115 (52.17%), Query Frame = 1


Query: 1   MTMNCLTCQALPRTQSDRENRGYQTPSTRGKSCCLYVPRRWSTELTTPSSYDSIKIDDDH 60
           MT+NCLTCQ+L RT SD+E   Y       K CC+ V R WS  LT P  Y+ I+ +  H
Sbjct: 1   MTLNCLTCQSLQRTNSDKE---YSNGGPIKKLCCIKVERSWSGSLTPPP-YEQIR-NGAH 60

Query: 61  HISSSNVHKKARTRRVRSECGG-------NEPKLVRSSGMRRDWSFEDLGLRGQK 109
                   KK +    R    G        EPKLVRS GMRRDWSFEDL  R  +
Sbjct: 61  GSMVVTAKKKVKKSHRRLNSTGAVAFTTDTEPKLVRSVGMRRDWSFEDLRQRNNE 110

[Close]

BLAST of CSPI03G46700 vs. TrEMBL
Match: M5WF71_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021585mg PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 7.3e-12
Identity = 54/126 (42.86%), Postives = 72/126 (57.14%), Query Frame = 1


Query: 1   MTMNCLTCQALPRTQS---DREN----RGYQTPSTRGKSCCLYV--PRRWSTELTTPSSY 60
           MT+NCLTCQ L RT S   D++N    + Y+      K CC+ +   R WS  LT PS Y
Sbjct: 1   MTLNCLTCQVLNRTNSSGSDKDNVCKDKAYR------KICCVNINMERSWSGNLTPPS-Y 60

Query: 61  DSIK-----IDDDHHISSSNVHKKARTRRVRSECGGNEPKLVRSSGMRRDWSFEDLG-LR 112
           + I+     + D   +  S  H++  +    +  G  EP+LVRSSGMRRDWSFE+L  LR
Sbjct: 61  EQIQESSMFMPDKKKVKMSMGHRRLMSTGGVAYEGSTEPRLVRSSGMRRDWSFENLALLR 119

[Close]

BLAST of CSPI03G46700 vs. TrEMBL
Match: A0A061G340_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_015716 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-11
Identity = 49/114 (42.98%), Postives = 68/114 (59.65%), Query Frame = 1


Query: 1   MTMNCLTCQALPRTQSDRENRGYQTPSTRGKSCCLYVPRRWSTELTTPSSYDSIKIDDDH 60
           M++NCLTCQ L RT S+++ R Y       K CC+ V R WS  L+ P++Y+ I+ ++  
Sbjct: 1   MSLNCLTCQVLQRTDSNKD-RDYGKEKDSRKFCCIRVDRSWSGNLS-PAAYEQIR-NEPM 60

Query: 61  HISSSNVHKKART-----RRVRSECGGNEPKLVRSSGMRRDWSFEDL-GLRGQK 109
            + +   H++  T       V  E  G EP+LVRS GMRRDWSFEDL G R +K
Sbjct: 61  PVPTRKGHRRLNTIDTTFGAVAFEADG-EPRLVRSCGMRRDWSFEDLRGTRDEK 110

[Close]

BLAST of CSPI03G46700 vs. TAIR10
Match: AT5G46770.1 (AT5G46770.1 unknown protein)

HSP 1 Score: 59.3 bits (142), Expect = 1.8e-09
Identity = 47/128 (36.72%), Postives = 65/128 (50.78%), Query Frame = 1


Query: 1   MTMNCLTCQALPRTQSDREN--RGYQTPSTR-----GKSCCLYV--PRRWSTELTTPSSY 60
           M++NCL+CQALPRT S+++    G   P        GK+CC+     R WS  L+ P  Y
Sbjct: 1   MSLNCLSCQALPRTDSNKDVDLSGPGPPRVEINNVLGKTCCVNPIGGRNWSGNLS-PRIY 60

Query: 61  DSI------------KIDDDHHISSSN-VHKKARTRRVRSECGGNEPKLVRSSGMRRDWS 107
           + I            K+   HH+  S  V         R E    +PKLVRS+G+RR+WS
Sbjct: 61  EKIGRPGSSLAHKMKKVKKIHHVRLSGPVGSSPSNVPTRPE----QPKLVRSTGVRRNWS 120

[Close]

BLAST of CSPI03G46700 vs. TAIR10
Match: AT2G35215.1 (AT2G35215.1 unknown protein)

HSP 1 Score: 48.9 bits (115), Expect = 2.4e-06
Identity = 33/102 (32.35%), Postives = 50/102 (49.02%), Query Frame = 1


Query: 1   MTMNCLTCQALPRTQSDRENRGYQTPSTRGKSCCLYVPRRWSTELTTPSSYDSIKIDDDH 60
           M++NCL C  L RT SDR+    +  S +      +    +   +   SS   ++     
Sbjct: 1   MSLNCLACHILQRTDSDRDMGSRKDSSFKEN----FATSAFEKMVRNRSSLPVVR----- 60

Query: 61  HISSSNVHKKARTRRVRSECGGNEPKLVRSSGMRRDWSFEDL 103
               +  H++  +  +      +EPKLVRSSG+RRDWSFEDL
Sbjct: 61  --RVNKGHRRLYSADIMVYGELDEPKLVRSSGIRRDWSFEDL 91

[Close]

BLAST of CSPI03G46700 vs. NCBI nr
Match: gi|700205252|gb|KGN60385.1| (hypothetical protein Csa_3G902280 [Cucumis sativus])

HSP 1 Score: 238.0 bits (606), Expect = 7.9e-60
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 1


Query: 1   MTMNCLTCQALPRTQSDRENRGYQTPSTRGKSCCLYVPRRWSTELTTPSSYDSIKIDDDH 60
           MTMNCLTCQALPRTQSDRENRGY+TPSTRGKSCCLYVPRRWSTELTTPSSYDSIKIDDDH
Sbjct: 1   MTMNCLTCQALPRTQSDRENRGYETPSTRGKSCCLYVPRRWSTELTTPSSYDSIKIDDDH 60

Query: 61  HISSSNVHKKARTRRVRSECGGNEPKLVRSSGMRRDWSFEDLGLRGQKKGRFH 114
           HISSSNVHKKARTRRVRSECGGNEPKLVRSSGMRRDWSFEDLGLRGQKKGRFH
Sbjct: 61  HISSSNVHKKARTRRVRSECGGNEPKLVRSSGMRRDWSFEDLGLRGQKKGRFH 113

[Close]

BLAST of CSPI03G46700 vs. NCBI nr
Match: gi|659132028|ref|XP_008465978.1| (PREDICTED: uncharacterized protein LOC103503546 [Cucumis melo])

HSP 1 Score: 169.1 bits (427), Expect = 4.5e-39
Identity = 89/116 (76.72%), Postives = 100/116 (86.21%), Query Frame = 1


Query: 1   MTMNCLTCQALPRTQSDRENR-GYQTPSTRGKSCCLYVPRRWSTELTTPSSYDSIKIDDD 60
           MTMNCLTCQALPRTQSDREN  GY+TPS+RGKSCCLYVPRRWS ELT    ++ IK+D+D
Sbjct: 1   MTMNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTP---HNPIKLDED 60

Query: 61  HHISSSNVHKKARTRRVRS-ECGGNEPKLVRSSGMRRDWSFEDLGLRG-QKKGRFH 114
             ISSS++HKK R+RR RS + GGNEP+LVRSSGMRRDWSFEDLGLR  QKKGRFH
Sbjct: 61  --ISSSDLHKKPRSRRARSGDYGGNEPRLVRSSGMRRDWSFEDLGLRDHQKKGRFH 111

[Close]

BLAST of CSPI03G46700 vs. NCBI nr
Match: gi|567871665|ref|XP_006428422.1| (hypothetical protein CICLE_v10013401mg [Citrus clementina])

HSP 1 Score: 79.3 bits (194), Expect = 4.7e-12
Identity = 51/115 (44.35%), Postives = 60/115 (52.17%), Query Frame = 1


Query: 1   MTMNCLTCQALPRTQSDRENRGYQTPSTRGKSCCLYVPRRWSTELTTPSSYDSIKIDDDH 60
           MT+NCLTCQ+L RT SD+E   Y       K CC+ V R WS  LT P  Y+ I+ +  H
Sbjct: 1   MTLNCLTCQSLQRTNSDKE---YSNGGPIKKLCCIKVERSWSGSLTPPP-YEQIR-NGAH 60

Query: 61  HISSSNVHKKARTRRVRSECGG-------NEPKLVRSSGMRRDWSFEDLGLRGQK 109
                   KK +    R    G        EPKLVRS GMRRDWSFEDL  R  +
Sbjct: 61  GSMVVTAKKKVKKSHRRLNSTGAVAFTTDTEPKLVRSVGMRRDWSFEDLRQRNNE 110

[Close]

BLAST of CSPI03G46700 vs. NCBI nr
Match: gi|1009157756|ref|XP_015896924.1| (PREDICTED: uncharacterized protein LOC107430587 [Ziziphus jujuba])

HSP 1 Score: 79.0 bits (193), Expect = 6.1e-12
Identity = 44/115 (38.26%), Postives = 64/115 (55.65%), Query Frame = 1


Query: 1   MTMNCLTCQALPRTQSDRENRGYQTPSTRGKSCCLYVPRRWSTELTTPSSYDSIKIDDDH 60
           M++NCLTC  + R+ S+ + + +       K    +V R WS  L +P SY+   + +  
Sbjct: 1   MSLNCLTCSQVQRSNSESDRKQHGKDRNCTKISNAHVDRSWSGNLASPPSYEQFCMKNAS 60

Query: 61  ----HISSSNVHKKARTRRVRSECGGNEPKLVRSSGMRRDWSFEDLGLRGQKKGR 112
               H   +  H++  +    +  GG EP+LVRSSGMRRDWSFEDL  R +KKGR
Sbjct: 61  MLVAHKKVTQGHRRLHSTGAVAFEGGAEPRLVRSSGMRRDWSFEDLRQRDEKKGR 115

[Close]

BLAST of CSPI03G46700 vs. NCBI nr
Match: gi|645265650|ref|XP_008238249.1| (PREDICTED: uncharacterized protein LOC103336898 [Prunus mume])

HSP 1 Score: 79.0 bits (193), Expect = 6.1e-12
Identity = 51/120 (42.50%), Postives = 68/120 (56.67%), Query Frame = 1


Query: 1   MTMNCLTCQALPRTQSDRENR-GYQTPSTRGKSCCLYV--PRRWSTELTTPSSYDSIK-- 60
           MT+NCLTCQ L RT S   ++   +      K CC+ +   R WS  LT PS Y+ I+  
Sbjct: 1   MTLNCLTCQVLNRTNSSGSDKDNVRKDKAYRKLCCVNINMERSWSGNLTPPS-YEQIQES 60

Query: 61  ---IDDDHHISSSNVHKKARTRRVRSECGGNEPKLVRSSGMRRDWSFEDLG-LRGQKKGR 112
              + D   +  S  H++  +    +  G  EP+LVRSSGMRRDWSFE+L  LR +KKGR
Sbjct: 61  SMFMQDKKKVKMSLGHRRLMSTGGVAYEGSTEPRLVRSSGMRRDWSFENLALLRNEKKGR 119

The following BLAST results are available for this feature:

BLAST of CSPI03G46700 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G46700 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEC0_CUCSA	5.5e-60	99.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G902280 PE=4 SV=1	[more]
V4SM01_9ROSI	3.3e-12	44.35	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013401mg PE=4 SV=1	[more]
A0A067DPK3_CITSI	3.3e-12	44.35	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046563mg PE=4 SV=1	[more]
M5WF71_PRUPE	7.3e-12	42.86	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021585mg PE=4 SV=1	[more]
A0A061G340_THECC	1.2e-11	42.98	Uncharacterized protein OS=Theobroma cacao GN=TCM_015716 PE=4 SV=1	[more]

BLAST of CSPI03G46700 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G46770.1	1.8e-09	36.72	unknown protein	[more]
AT2G35215.1	2.4e-06	32.35	unknown protein	[more]

BLAST of CSPI03G46700 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700205252\|gb\|KGN60385.1\|	7.9e-60	99.12	hypothetical protein Csa_3G902280 [Cucumis sativus]	[more]
gi\|659132028\|ref\|XP_008465978.1\|	4.5e-39	76.72	PREDICTED: uncharacterized protein LOC103503546 [Cucumis melo]	[more]
gi\|567871665\|ref\|XP_006428422.1\|	4.7e-12	44.35	hypothetical protein CICLE_v10013401mg [Citrus clementina]	[more]
gi\|1009157756\|ref\|XP_015896924.1\|	6.1e-12	38.26	PREDICTED: uncharacterized protein LOC107430587 [Ziziphus jujuba]	[more]
gi\|645265650\|ref\|XP_008238249.1\|	6.1e-12	42.50	PREDICTED: uncharacterized protein LOC103336898 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G46700.1	CSPI03G46700.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36019	FAMILY NOT NAMED	coord: 2..113 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G46700	Cla016198	Watermelon (97103) v1	cpiwmB183
CSPI03G46700	Csa3G902280	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G46700	MELO3C003411	Melon (DHL92) v3.5.1	cpimeB215
CSPI03G46700	MELO3C013852	Melon (DHL92) v3.5.1	cpimeB245
CSPI03G46700	LsiUNG000400	Bottle gourd (USVL1VR-Ls)	cpilsiB146
CSPI03G46700	MELO3C013852.2	Melon (DHL92) v3.6.1	cpimedB230
CSPI03G46700	MELO3C003411.2	Melon (DHL92) v3.6.1	cpimedB209
CSPI03G46700	CsaV3_3G049160	Cucumber (Chinese Long) v3	cpicucB145
CSPI03G46700	Cla97C09G174740	Watermelon (97103) v2	cpiwmbB260
CSPI03G46700	Bhi05G000337	Wax gourd	cpiwgoB304
CSPI03G46700	Cucsa.313100	Cucumber (Gy14) v1	cgycpiB473
CSPI03G46700	CmaCh19G002370	Cucurbita maxima (Rimu)	cmacpiB517
CSPI03G46700	CmoCh19G002520	Cucurbita moschata (Rifu)	cmocpiB507
CSPI03G46700	Cp4.1LG15g02140	Cucurbita pepo (Zucchini)	cpecpiB243
CSPI03G46700	CsGy3G044140	Cucumber (Gy14) v2	cgybcpiB111
CSPI03G46700	Carg24521	Silver-seed gourd	carcpiB1006
CSPI03G46700	Carg23383	Silver-seed gourd	carcpiB1002
CSPI03G46700	Carg26196	Silver-seed gourd	carcpiB0535

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G46700	Cucumber (Chinese Long) v2	cpicuB121
CSPI03G46700	Watermelon (Charleston Gray)	cpiwcgB178
CSPI03G46700	Watermelon (Charleston Gray)	cpiwcgB192
CSPI03G46700	Watermelon (97103) v1	cpiwmB204
CSPI03G46700	Cucurbita pepo (Zucchini)	cpecpiB219
CSPI03G46700	Cucurbita pepo (Zucchini)	cpecpiB719
CSPI03G46700	Cucurbita pepo (Zucchini)	cpecpiB869
CSPI03G46700	Bottle gourd (USVL1VR-Ls)	cpilsiB228
CSPI03G46700	Cucumber (Gy14) v2	cgybcpiB112
CSPI03G46700	Silver-seed gourd	carcpiB0817
CSPI03G46700	Cucumber (Chinese Long) v3	cpicucB147
CSPI03G46700	Watermelon (97103) v2	cpiwmbB186
CSPI03G46700	Wax gourd	cpiwgoB244
CSPI03G46700	Wild cucumber (PI 183967)	cpicpiB100
CSPI03G46700	Cucumber (Gy14) v1	cgycpiB485
CSPI03G46700	Cucurbita maxima (Rimu)	cmacpiB336
CSPI03G46700	Cucurbita maxima (Rimu)	cmacpiB607
CSPI03G46700	Cucurbita maxima (Rimu)	cmacpiB833
CSPI03G46700	Cucurbita moschata (Rifu)	cmocpiB327
CSPI03G46700	Cucurbita moschata (Rifu)	cmocpiB596
CSPI03G46700	Cucurbita moschata (Rifu)	cmocpiB820