Cp4.1LG15g01290 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG15g01290
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Alba DNA/RNA-binding protein
Location	Cp4.1LG15 : 1037043 .. 1046062 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAACTCTCTCGGCCTTTCAGAGTGAAGACAGGGAATCTTCAGCAAAGGGACAGCCCAGACAGATCTCTCTAAGCGCTTTCCCATTGACCCAAACTTTGTCATTTTTCTTCGACATGTGCACAGCCCCTTTTAAACAAGCCTTGCCCTACCAATTCTAGCCATGCAGGTAAGCCTTTCAAACACCTTTGTTCGTGAAAGTCTCTGAGAAAATTTGTGTTTTCTTCTGTTAAATCTTGATGGGTATCTGTTTTTTTTATGAATTATAGCAAGTTCTTCAATGGGTTTTCAAGGAAACTAATGAAAAGGATTCCACAAAGAAGAAGGAAACGAGTTGCGGTAAGAGAAAATGAATGCACAGTACCTGTTTGATAAAATGTCTGAGTGACTTTGATTCCTTTTTTTGCCAGATAAAGGAAGTTCTAGATCAAAGGAGATAGTGGTTTCTGTTTCTAATCATTGTGGGGGCTCTCAAAGATCAAAGGGATTTGAAGGAAGGAGATTTGATCTTAAGAGATTGAAGTCATTTGCTTTGTTGTGTAGGAAGGATATTGCCAAGTCCTGCTTTTATAGTACCATTAATATTAAGAGGCCTAGAACGACTCAGGGCGGCTTTGATAATATGCACCAGTATTGGATCCATAAGATGAAAAAAGAAGATATTGGTCAAAAGGTGGATTCTTGTTCTGTTCATGCCGGCACCAAGGTGTTGCCGATAACTGATGCCACTCTTGTAGAACAATGCGGCAGTAAGGGTGTAAAGAAAGTTGTGGCCAATGGGGAGAGTAAAACCAAAGGGAAATCAAGAGTGAAGGAACTTTTGAGATGGGCTATGGCTTCTAGATCAGAAAAAGGAGGGAAGTTCATCACTGGCAAGGTGATTTTCTTTACTTCTTAATTGCCTTTTCCTTGTTAGACATCAATATTTCTATTACTTAGTCTATTGGGTTGAATCATGTATTCCGGTCTTATTTGGACTTTCCGTTTCGAACTTCTTCTCAAGATTTTTAAAACGCCTCTATTAGGGAGAGGTTTCCAGACCCTTATAAAAAATGTTTTGTTCTCCTCTCTATCTGATGTGAGATCTCACAATCCACCTCCCTCGAGACCCAGTGTCTTTGCTGACATTCCCTTCCCCAATCGATGTGGGACCTCCAATTCACCTCCTTCGGTGCTGGCACACTTCCTCGTGTCCACCCCTCTCGAGGCCCAGCGTCCCCGCTAACACTCCCTTCCCCAATCAACATGGGACCCTTAATCTACCCCTTCGGGGCCCAGCGTTCGTGATGGCACACTGCCTCATGTCCACCCCCTTTGGGGCTCAGCCTTTTTGTTGGCACATCGCTCGGTGTTTGGCTCTGATACCATTTGTAACGGCCCAAGGCCACTGCTAGTAGATATTGTCCTTTTTCGACTTTCCCTTCAAAGTTTTTAAAACACGTCTGCTAGAAAGAAGTTTCTACACCCTTATAAAAAAATATTTCGTTCTTCTTCTCAATTGAGGTGAGATCTCACACATCCCTTGAGGTCTAAGGATTAGTTTGGCTTATGGAAAAAAATATTTCATTCTCCTCTTCAATCGACGTGGGATATCACACATCCCTTGGGGTCTAAGGATTAGTTTGGCTTATGGAACATCAATCAATTCGATGTGGACCCCTAATCCACTCCCTTTGGGGTGCAGCGTTCGTGCTGGCACACCGCCTCGTGTCTACCTACTTTGGGGCTCAACCTCTTCGTTAGCATATCGCTCGGTGTCTGACTCTGATATCATTTGTAACGGCCCAAGGCTACTACGAGCAGACATTATCCTCTTTGGGCTTTCCTTTTCGGGCTTCCTCTCAAAGTTTTTAAAACATGTCTGATAGTGAGAGGTTTCCACACCCTTATAAAAAATGTTTCGTTCTCCTCTCCAACCGATATGGGATCTCACGTACCCTTTAGAGTCCGAGGATTAGTTTGGCTTATGGAACCTAGAATGTAAATTGTATCAACACCAATCAACTTAGGACCTTGCTGAGTGAATGGCTTAAAATTCACTGAATTTTATGGAACCGAACATTTGAAAAGTCGTTCCAAACATGCCCTAAAGCTATACACAATATGCAATTATTCGCTGAATGAATGACTTAAAATTATACCAACTTTTTCAGGTTTCACGAATGCGAAACCGAGGAACTCTTCATACAAGCTTGGACGATGATCGAGCGAGTAACGACTCCCCCAAGATCAGTTTCAGATGGGAAGCCGAAAGCTGCTCCTCCATTTCCTCAGCCTACACGTCGGTTTCGGGGGCGTCGTCCTTCAAAAACTGTTCCATTACACTGAATTCCACGGCCATTCATGAAATGAATCGCTATTATCCAAGAAAAGGAAGCTGGATCACTACAGATTCTGAATGTAAGATTCTAATCCCCATTTTTCTTACAAAACAAAAGACATCAAGAACTGACTTCACTTTCCTTCTATGCCTTCCATGAACAGTTGTTGTGTTAGAGCTATGAAGGAGAAGCTGTAATGGCTTCATCAACTGTTTGATCTGCCTGCAATATAAGAGCTGTAGATTCTATGCAAAACCAGAGGATTTTGTATGTAAAAAGGCTTCATATAGCTATGTAAAACACGTATCTGAAATAACATTGAGTGTATCAAACCATCATCTAACAAAGTCTTTGGTGTAATACGTTCCCTTCTAGAAAAACCGAGTTTTTTTTTCAGGTTTTTGCAGGTCGATATCGAGTTCAAAATGGCATCTTAGGATGAGTATCTTTCGATTTGACAAGTTTCTTGTTTCGGGTTCTTTCAAGAACAAATATAAAACATACTTTCAATTAAGAGGTCAAAGGTTCAAATCATCACTTTGTGTATTGTTGTACTACAAAAAAACTCTTTCCACGGAGAGGTTCAACTAATAGGCTTTAAGCTAGTCAACTATATTCTTGACCTAGATCAAGATTCGATAGAGTTTCGACCAACAGGCTCAATGCTAGTACGCCACTAGGCGTGGCTGATCTAGGGCTTGATCAACTCGTGGTTTGATTTGCTTCCACTTTGGACTTATTAGTTAGGGTCTTTTTACGGTAAATTAGGGATGTTCAAATGAAATCGAGAGCTCGACACTACCCAACCCAAAACATAAAGATTAGGTTGGGTTAGATTTATTTCGGTTTGGGTTGACATTTTTACTCAAGTCAACCCCACCAAAACCGGAAACATGGTTACGACTTAGTTTTTGGGTTGACATTTTTACTCAAGTCAACCCCACCAAAGCCGAAAACATGGTTACAGCTCAATGGCATCCTACATTATTTTTATGATTATTATAAAAATTAATAATATTTGAATTTTGTAAACGATGTTAGTGATGTAGTGTGACTCGGGAATATTTGATATTTAAAATTTAAAAATAATTAAAAAAAAAAAAAAAAAAATCAGACAACGAACTAATTATTGTGAGTATTAAACCCATTTGGTTAGTGTAAAAGACAAGTCGAGTAATACAAGTTAGTGAGGTTTTAGGCTTTTAGTCTCCTTTCCCCTTCCTCTTTCCTTCAGCTCCGAGTCACACTCTCAAACACTTCACTGTCAAGCTTTCTCCTCTTTCCCGTTAGGGTTTCTGTCTTCTTCTTCGTCTTCCTCTTCCCTCTTTCGCTTCCCGCCTTGCAGAAGAACCTCCATGGATAGGTACCAGAAGGTGGAGAAGCCTAAACCTGAATCGCCGATAAACGAAAATGAAATCCGCATCACAAGTCAAGGCGCTATTCGAAACTACATCACTTATGCTTCTACCCTACTTCAGGTATCATTTCACTGTTTTTGTTATTGTTTACATCAGCTATTGTATCTCATTTCATTTTTTCTTTTTGGTGTGTTCGTCTTAATCTTTCTGTTTATACGTTGCGTCTGTTGTTTTTTGAACAATGAATCTATCTTATGACGTCAAGGCGCTATTAGAAGATTGTCTTGGTTTTGGTTATTTTTAATGTTAGCCGACATTTATTGATTTGGTACATTTTCTGGTATATTGATTTCGTTTCTTCTACTTGCGAATTTTGAGGAATAGTTGCTCGCTGGCTGATACTCTGCCGTATATGCATTGTATGTGGAAGCGTCTGTAAGCTTAATGCACGAGCTATGGTACTTCTTAACATGCGATAGCTCGTGAAATGTAATCTGTTCTGTTGATTATCTACATTCCTTGTAGTTTTTTTCTTCTAGCCTATCGTGAATTCTAGTTATATCGATATTTTTTCACTTTACCATATGAAAAGAATAAAGATACGGTTGAATTTATCTTTTATAGTTTATCTTGTATTCTCAGATCGAGTAATTACGCTAATGCAGTGATCATGTGGAGCTTGGTGTTTCTGTATTATGTTGACGTGATGTTTGGCTCAGGTTTCTACTATTTGTACACATTTTTTAATATATAAATTTACCATCAAGATACAGCTACGTACTTCTCTTTCTTATAAAAAGAATCAAGTGCACTAGAGTTTATGGTTTACAATGTACAACCAGATCTATTCATTATGCTAATACAATGATCATGGCCAAATTGTCATTTCCTTATTCTTGTCTCACGGGTTTTTTCAACTTGTTCGTACTATTTTTTTATTTTGAGGAAGATAATTATTGATGTTATTCATGGGATCAAGTTTTTGTAATCTATTCAATTAGTAGATCGATTATTTCCTTATTTCTAATCATGCTGGCTAACTTGAGCATAGCTCAACTAGTCATTCGTTTGGAGAGAATGAGTTCCAGATCTTGGCTTTCGAAGTCCTCTGAGGGCATTTGCAGGAGTTCTTTTTTTAGGATTCTTTGTATACCTTCTCCCCTTCAAGGATCCACTGTGTTTTTTTAGGATTCTTTTTTTTTTTATCTGGAAAGTTTTGCATGGGAGAGTGTATACTGAAGATTGTATCCAAAGGCTTTCCTCCATGGTGTTGTGGCCTCAATAGTGTGTCATTTGTAGAAGACGGGGTGAGGAACTTGACCATTTACTTTACTTGGCCCTTGGACTTTTTCTTGCTCGTAATCGAGGTTGTTGTTTGATATTTGAGGAGGTGTTCTTGAATCCTCCTTGTCATGAAAAGAAAGGGTTCTTTGGCATTCTTATTTTTTGCTCTGTTGTTGGGCATTTGGCTTGAGACTTGAGAGAAATAGTAGAATTTTTCGTGGAGTGGAGTGATTTGGGGAGAGCTTTTGGGTTACGATTAGGCTTAATGTCTCCCTGTGGGTCTCTCTTAATACGGTTTTTCATAATTATCCACTTAGCATTATTCTTTTCGATTGGAGTCCCTTTCTATAATTGGGTGTGAGTGCCCTATTGTTTGTGGGCTTGTTTTTTGTTCGCCCTTGTATATCCCTATAATGAAAGCTTGGTTTCTTATAAAAAAAGGTAAAAAAATCAACTATTCATTTGTGTATTGGATTACCAAACTAGTGGCTGGGATTGTCATCTGGGCTAACACCCGCTAGTGCCAAGCCTATTTATGCAAACCAAATTTAGAGAGATTCAAGCCAGTCTTTCAACTTTTGGTTTTCAAACAAATAGAAACATAACAGATAACTATCATTTTCAATAAAAAAAAATTGCTTAAAACAAACGAGAGAGACAGCCCACTTCTCAAGAGAACATTAAATCGATTAAGAGAGGAAGAGAGCTTGGGAGAGATAGTGCAAACATCCTCCCTTTTCAGGAGAGAGAGGAAGAGGAGAATGCTGATTTGAGTGATGAGAGAGGCTCTGTATAGTGTTTGACAGCAAGACCAAGTCCACCATCAAGCATGCTGAGTTTGAGTTAGAGGGTAAAAAGTTCCCAGTGGTATGGCTTTCGAGTGTCGGTTTAGTATAAAATGGATTTTTTATGTTAGAAAATCGTGGTTCCTAATAGCCTATTTATAAATTCTCTCTCTCTCTCTAATAAAAAGGTTTTTTCCTCCTTGTTTATTCATGTTTCTAAGCATGTGCTTACTGTCGGCTGAGAATGAATCTGTTCTACTTTGGTTTAATATATCACGTTTTCACTTTTTATAGGACAAACGTGTTAGAGAGATAGTGTTGAAAGCCATGGGGCAGGCAATCAGTAAAACAGTTTCCATTGCAGAAATTTTAAAGGTTTGAGTCCTTTACAGTCTGCAACTGTGCATGTGTAACTTATTTTATAATTAACATGCCAGTTTCATTCTGAAACAGAAGAGAACTCCACAATTGCATCAAGAAACTTCCATCAGCTCAGTAAGCATAATTGATGTATGGGAGCCTATTGAAGAAGGTCTTGTACCGTAAGTTTTAATCTCTAAAAATCTCTGTTAATTGCCTGATGAAGTCCTATGTAATTACTGCTGGTTGGTTTCTTTATGCTCATAGTCACGACTTAGCGTTGTTTGGATTGGTACTCTTTAGTTTGCAATTGCATATTTGCTTATTATTATTGCTGTGGGCATGTAGCTTTAGCATACTCTTCTGCAGATATTTAAGTAATAACGTCTGACATATGATGCAGTGTGGAGATGACTCGACACGTCTCAATGATATCAATTACCCTGTCAAATCGAGAACTAAATAAAGATTCTCCTGGGTAAGATGTGAAAGTCTAATCTGAGCTGCTTTCCAGTTTTTACACTCAAGTTTCTTATTACGAATGTTTCAAGATGAAAAGTGTTACTATTTGTAGGTATCAAGCTCCACAGTTTGTGGAGCAGCCAAAGCAACAATATAAGCAGCAGCAGCAACAACAGCCCAGACAGTCTCGTCCTTATTACAATGCTGTTAACGAAGGTGATCCTTTTTTCTGAAAAATAAAATATACTGTTACAGCGTGAAGATGTAGAGAATGTGATATCTTCGACCCTATTTTATAGTGCAGCAACACAAAAACATAAATAAAATACCTGAAAACAGAATCAAGAAAATTAAGAATTCTTGGGATTTTGTTACATCATTCCAATTAGTAAAGAAACCAAGTGTTCTATTACAAGTGAATTGGGGCTTCGGGATGTTAAGGTAGACTAGATGTTAGCTGTGGGTTTGAGATACTGACTGGGAATCTAAAAGAAAGGAATCACCTAATCAGTGTTTTTGAAAGCCTTCTCAGGTGTTATATGTCACGGTTATGCTTGTTCATTGCGTGCTTTCTGTGAGTGCATGCCCATTCCAAACCTTTTACCTTGCTTCCATTGCATGTCTTTCATTCTAGCGTAGTATACGACTAATTGTTAAATCTTCCAATTCGGGTTATATGCTATCAATGTTGTTGTCCTTTATGGCTGGCTAGAGAATAACATCTACTTCTCAAAAAAGCTTTTTAAAATATTTTTCAAAACTCTCTCTAACCCCATTTATTAAAATTGTTTTCCAAGAATAGGAGGTAGAGGCTACGAAATAGACAATTTGTGCCAGCGACAATCCAAGTTTAGAGCTAATTGACTTACTGAAGGGCGAGAGTAAGTACTGCACAATTACTTCGTAAGTCCAGAAGAAGCGTGATTGTGACACTAGGCGCAGTTCTAGTGCCTCACCTTTTCAAGAAGGCATATGCTGTCCTGAAAAGCTACTCGAGAATAATATAATTTCATAAGATAATCACAAGCTACAAATATTTTCCCCTCAGAGATAGGTAGCACCCAATTAATTCTAATTCATTGGGGAGGTCACAGTTGATGTGTTTGGAAAAACTACAAATAAATTTTAGTGGAGATCATACTATTAACTGTTAGATTATGGTCCTTTCTATAAATTTGGCAGATCCATATGGTCAAAGCCGAGGTCGAGGTCGAGGGAGAGGGCGTGGTTGGGGCAGAGGTGGATATGGAAACTACCAAGGGGGATATGGAAACTACCAGGGCGGATATGGCCATTACCAAGGCGGATATGGCCACTATCAAGGTGGATCTGGTGGCTACCAAGGTGGTGGCCCTGGCGGCTACCAAGGCAACTATCAAGGTAGATAAGTTTTCCCTCTTTCAGTTTCGATCATGCTAGATCTTGAGCACGGCCTAATTTTTAGTTTCGATTTTGACACAGATAATAGTGGGTACTCGAATTGGAGTAGAGGCAGTGGGCGAGGCCGAGGTTGGACATATCGTGGTAAGTTTCGTTCTCAAATTTCTTATCTCGTTTAGAATCTAATCTAACTAACTGTCATTTCGCGCATTTTGTCGATGTTCTGTACCACCTAGTTGTTTAATCTCTTGGAATGTGATCTGTATTTATAGGATTTCTTAAGAAAACGAGATCAAATGTTTTCGAGTTTCACCTCTTAACTATTTCTTGGTCTAAGCTAAATCTTGAACATGTTGAAAATAATCATGAGTTGAGTTGTTCGAATCAATCGCATTCCTTTCAGGAACTGGCTATGATAGAGGCAGAGTGGGGAGGGGTTACGGTCGAGGTCGGGGTCGGGGTCGGATAGACGGACAAACAAGGGACAATGGTGGCAGTAGAAACCAGGTTTAGTTAAAAAAAAAAAAAAGTTACTCATTTTCACTGTTCTCTTTTCTCGAGCTAAAATGCCTTGCCTTTGCCAGTGAGATGCTTTTTATCAGAATTTACTGTTTTTAATAGCGTGGTAATTTCGCTTCTTACAGCGTTGTTGAGCAGTAATTTCTTCTTTTTTGCCTTTGATAACGTGGTACGCAAGGTTGTTTTTGTTCATGTTAAACTTATTATCCAATAATAAAAAGTCTATATATATATATATATATATAATATTATTTGTAATGACTCAGATCCACCGCTAGCAGATATTGTACTATTTGGCTTTCCCTTTCGGGCTTTCCCTTTAAAACGTGTCTACTAGGGAAAGGTTTTCACACCCTTATACACGGTGGTTTGTTCTCTTCCCCAGCCAATGTGGGACATCACAATCTACCCCCCTTTGGGGTCCAACGTCTTCGCTCGCACTCTTTCCTTCCTCCAATTGATGTGGGATTGCCCCCAAATCCATCCTTTTTAGTGCCTAGCGTCTTTACCGGTAGTCTACCCCTTTAGGGATGGTAGTCTAGCCCCTCTGGG

mRNA sequence

CAAAACTCTCTCGGCCTTTCAGAGTGAAGACAGGGAATCTTCAGCAAAGGGACAGCCCAGACAGATCTCTCTAAGCGCTTTCCCATTGACCCAAACTTTGTCATTTTTCTTCGACATGTGCACAGCCCCTTTTAAACAAGCCTTGCCCTACCAATTCTAGCCATGCAGCAAGTTCTTCAATGGGTTTTCAAGGAAACTAATGAAAAGGATTCCACAAAGAAGAAGGAAACGAGTTGCGATAAAGGAAGTTCTAGATCAAAGGAGATAGTGGTTTCTGTTTCTAATCATTGTGGGGGCTCTCAAAGATCAAAGGGATTTGAAGGAAGGAGATTTGATCTTAAGAGATTGAAGTCATTTGCTTTGTTGTGTAGGAAGGATATTGCCAAGTCCTGCTTTTATAGTACCATTAATATTAAGAGGCCTAGAACGACTCAGGGCGGCTTTGATAATATGCACCAGTATTGGATCCATAAGATGAAAAAAGAAGATATTGGTCAAAAGGTGGATTCTTGTTCTGTTCATGCCGGCACCAAGGTGTTGCCGATAACTGATGCCACTCTTGTAGAACAATGCGGCAGTAAGGGTGTAAAGAAAGTTGTGGCCAATGGGGAGAGTAAAACCAAAGGGAAATCAAGAGTGAAGGAACTTTTGAGATGGGCTATGGCTTCTAGATCAGAAAAAGGAGGGAAGTTCATCACTGGCAAGGTTTCACGAATGCGAAACCGAGGAACTCTTCATACAAGCTTGGACGATGATCGAGCGAGTAACGACTCCCCCAAGATCAGTTTCAGATGGGAAGCCGAAAGCTGCTCCTCCATTTCCTCAGCCTACACGTCGGTTTCGGGGGCGTCGTCCTTCAAAAACTGTTCCATTACACTGAATTCCACGGCCATTCATGAAATGAATCGCTATTATCCAAGAAAAGGAAGCTGGATCACTACAGATTCTGAATGTTTTTGCAGAAGAACCTCCATGGATAGGTACCAGAAGGTGGAGAAGCCTAAACCTGAATCGCCGATAAACGAAAATGAAATCCGCATCACAAGTCAAGGCGCTATTCGAAACTACATCACTTATGCTTCTACCCTACTTCAGGACAAACGTGTTAGAGAGATAGTGTTGAAAGCCATGGGGCAGGCAATCAGTAAAACAGTTTCCATTGCAGAAATTTTAAAGAAGAGAACTCCACAATTGCATCAAGAAACTTCCATCAGCTCAGTAAGCATAATTGATGTATGGGAGCCTATTGAAGAAGGTCTTGTACCTGTGGAGATGACTCGACACGTCTCAATGATATCAATTACCCTGTCAAATCGAGAACTAAATAAAGATTCTCCTGGGTATCAAGCTCCACAGTTTGTGGAGCAGCCAAAGCAACAATATAAGCAGCAGCAGCAACAACAGCCCAGACAGTCTCGTCCTTATTACAATGCTATCCATATGGTCAAAGCCGAGGTCGAGGTCGAGGGAGAGGGCGTGGTTGGGGCAGAGGTGGATATGGAAACTACCAAGGGGGATATGGAAACTACCAGGGCGGATATGGCCATTACCAAGGCGGATATGGCCACTATCAAGGTGGATCTGGTGGCTACCAAGGTGGTGGCCCTGGCGGCTACCAAGGCAACTATCAAGATAATAGTGGGTACTCGAATTGGAGTAGAGGCAGTGGGCGAGGCCGAGGTTGGACATATCGTGGAACTGGCTATGATAGAGGCAGAGTGGGGAGGGGTTACGGTCGAGGTCGGGGTCGGGGTCGGATAGACGGACAAACAAGGGACAATGGTGGCAGTAGAAACCAGGTTTAGTTAAAAAAAAAAAAAAGTTACTCATTTTCACTGTTCTCTTTTCTCGAGCTAAAATGCCTTGCCTTTGCCAGTGAGATGCTTTTTATCAGAATTTACTGTTTTTAATAGCGTGGTAATTTCGCTTCTTACAGCGTTGTTGAGCAGTAATTTCTTCTTTTTTGCCTTTGATAACGTGGTACGCAAGGTTGTTTTTGTTCATGTTAAACTTATTATCCAATAATAAAAAGTCTATATATATATATATATATATAATATTATTTGTAATGACTCAGATCCACCGCTAGCAGATATTGTACTATTTGGCTTTCCCTTTCGGGCTTTCCCTTTAAAACGTGTCTACTAGGGAAAGGTTTTCACACCCTTATACACGGTGGTTTGTTCTCTTCCCCAGCCAATGTGGGACATCACAATCTACCCCCCTTTGGGGTCCAACGTCTTCGCTCGCACTCTTTCCTTCCTCCAATTGATGTGGGATTGCCCCCAAATCCATCCTTTTTAGTGCCTAGCGTCTTTACCGGTAGTCTACCCCTTTAGGGATGGTAGTCTAGCCCCTCTGGG

Coding sequence (CDS)

ATGCAGCAAGTTCTTCAATGGGTTTTCAAGGAAACTAATGAAAAGGATTCCACAAAGAAGAAGGAAACGAGTTGCGATAAAGGAAGTTCTAGATCAAAGGAGATAGTGGTTTCTGTTTCTAATCATTGTGGGGGCTCTCAAAGATCAAAGGGATTTGAAGGAAGGAGATTTGATCTTAAGAGATTGAAGTCATTTGCTTTGTTGTGTAGGAAGGATATTGCCAAGTCCTGCTTTTATAGTACCATTAATATTAAGAGGCCTAGAACGACTCAGGGCGGCTTTGATAATATGCACCAGTATTGGATCCATAAGATGAAAAAAGAAGATATTGGTCAAAAGGTGGATTCTTGTTCTGTTCATGCCGGCACCAAGGTGTTGCCGATAACTGATGCCACTCTTGTAGAACAATGCGGCAGTAAGGGTGTAAAGAAAGTTGTGGCCAATGGGGAGAGTAAAACCAAAGGGAAATCAAGAGTGAAGGAACTTTTGAGATGGGCTATGGCTTCTAGATCAGAAAAAGGAGGGAAGTTCATCACTGGCAAGGTTTCACGAATGCGAAACCGAGGAACTCTTCATACAAGCTTGGACGATGATCGAGCGAGTAACGACTCCCCCAAGATCAGTTTCAGATGGGAAGCCGAAAGCTGCTCCTCCATTTCCTCAGCCTACACGTCGGTTTCGGGGGCGTCGTCCTTCAAAAACTGTTCCATTACACTGAATTCCACGGCCATTCATGAAATGAATCGCTATTATCCAAGAAAAGGAAGCTGGATCACTACAGATTCTGAATGTTTTTGCAGAAGAACCTCCATGGATAGGTACCAGAAGGTGGAGAAGCCTAAACCTGAATCGCCGATAAACGAAAATGAAATCCGCATCACAAGTCAAGGCGCTATTCGAAACTACATCACTTATGCTTCTACCCTACTTCAGGACAAACGTGTTAGAGAGATAGTGTTGAAAGCCATGGGGCAGGCAATCAGTAAAACAGTTTCCATTGCAGAAATTTTAAAGAAGAGAACTCCACAATTGCATCAAGAAACTTCCATCAGCTCAGTAAGCATAATTGATGTATGGGAGCCTATTGAAGAAGGTCTTGTACCTGTGGAGATGACTCGACACGTCTCAATGATATCAATTACCCTGTCAAATCGAGAACTAAATAAAGATTCTCCTGGGTATCAAGCTCCACAGTTTGTGGAGCAGCCAAAGCAACAATATAAGCAGCAGCAGCAACAACAGCCCAGACAGTCTCGTCCTTATTACAATGCTATCCATATGGTCAAAGCCGAGGTCGAGGTCGAGGGAGAGGGCGTGGTTGGGGCAGAGGTGGATATGGAAACTACCAAGGGGGATATGGAAACTACCAGGGCGGATATGGCCATTACCAAGGCGGATATGGCCACTATCAAGGTGGATCTGGTGGCTACCAAGGTGGTGGCCCTGGCGGCTACCAAGGCAACTATCAAGATAATAGTGGGTACTCGAATTGGAGTAGAGGCAGTGGGCGAGGCCGAGGTTGGACATATCGTGGAACTGGCTATGATAGAGGCAGAGTGGGGAGGGGTTACGGTCGAGGTCGGGGTCGGGGTCGGATAG

Protein sequence

MQQVLQWVFKETNEKDSTKKKETSCDKGSSRSKEIVVSVSNHCGGSQRSKGFEGRRFDLKRLKSFALLCRKDIAKSCFYSTINIKRPRTTQGGFDNMHQYWIHKMKKEDIGQKVDSCSVHAGTKVLPITDATLVEQCGSKGVKKVVANGESKTKGKSRVKELLRWAMASRSEKGGKFITGKVSRMRNRGTLHTSLDDDRASNDSPKISFRWEAESCSSISSAYTSVSGASSFKNCSITLNSTAIHEMNRYYPRKGSWITTDSECFCRRTSMDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILKKRTPQLHQETSISSVSIIDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKDSPGYQAPQFVEQPKQQYKQQQQQQPRQSRPYYNAIHMVKAEVEVEGEGVVGAEVDMETTKGDMETTRADMAITKADMATIKVDLVATKVVALAATKATIKIIVGTRIGVEAVGEAEVGHIVELAMIEAEWGGVTVEVGVGVG

Homology

[Close]

BLAST of Cp4.1LG15g01290 vs. Swiss-Prot
Match: RP25L_HUMAN (Ribonuclease P protein subunit p25-like protein OS=Homo sapiens GN=RPP25L PE=1 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 9.8e-12
Identity = 46/136 (33.82%), Postives = 67/136 (49.26%), Query Frame = 1


Query: 271 MDRYQKV-------EKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAM 330
           M+ Y+K          P P+ P +  E+R+     IRN +  A   L+    R +V    
Sbjct: 1   MEHYRKAGSVELPAPSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGS 60

Query: 331 GQAISKTVSIAEILKKRTPQLHQETSISSVSIIDVWEPI--EEGLVPVEMTRHVSMISIT 390
           G+A  K VS AEI+K+R P LHQ T +  +   D W P   + GL P+ + RHV  + + 
Sbjct: 61  GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPASPDTGLDPLTVRRHVPAVWVL 120

Query: 391 LSNRELNKDSPGYQAP 398
           LS   L+ +  GYQ P
Sbjct: 121 LSRDPLDPNECGYQPP 136

[Close]

BLAST of Cp4.1LG15g01290 vs. Swiss-Prot
Match: RP25L_MOUSE (Ribonuclease P protein subunit p25-like protein OS=Mus musculus GN=Rpp25l PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.3e-11
Identity = 43/120 (35.83%), Postives = 61/120 (50.83%), Query Frame = 1


Query: 280 PKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILKK 339
           P P+ P +  E+R+     IRN +  A   L+    R +V    G+A  K VS AEI+K+
Sbjct: 17  PMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSTRHVVFSGSGRAAGKAVSCAEIVKR 76

Query: 340 RTPQLHQETSISSVSIIDVWEPI--EEGLVPVEMTRHVSMISITLSNRELNKDSPGYQAP 398
           R P LHQ T +  +   D W P   + GL P+ + RHV  + + LS   L+    GYQ P
Sbjct: 77  RVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVLLSRDPLDPSECGYQPP 136

[Close]

BLAST of Cp4.1LG15g01290 vs. Swiss-Prot
Match: RP25L_BOVIN (Ribonuclease P protein subunit p25-like protein OS=Bos taurus GN=RPP25L PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.4e-10
Identity = 44/136 (32.35%), Postives = 67/136 (49.26%), Query Frame = 1


Query: 271 MDRYQKV-------EKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAM 330
           M+ Y+K          P P+ P +  E+R+ +   IRN +  A   L+    R +V    
Sbjct: 1   MEHYRKAGSVELPAPSPMPQLPPDTLEMRVRAGSKIRNLLGLALERLEGGSARHVVFSGS 60

Query: 331 GQAISKTVSIAEILKKRTPQLHQETSISSVSIIDVWEPI--EEGLVPVEMTRHVSMISIT 390
           G+A  K VS AEI+K+R P L+Q T +  +   D W P   + GL P+ +  HV  + + 
Sbjct: 61  GRAAGKAVSCAEIVKRRVPGLYQLTKLRFLQTEDSWVPTSPDTGLDPLTVRSHVPAVWVL 120

Query: 391 LSNRELNKDSPGYQAP 398
           LS   L+ +  GYQ P
Sbjct: 121 LSRDPLDPNEYGYQPP 136

[Close]

BLAST of Cp4.1LG15g01290 vs. Swiss-Prot
Match: RPP25_HUMAN (Ribonuclease P protein subunit p25 OS=Homo sapiens GN=RPP25 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.3e-08
Identity = 37/117 (31.62%), Postives = 59/117 (50.43%), Query Frame = 1


Query: 291 IRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILKKRTPQLHQETSI 350
           +R+     IRN + +A+  +     R IV    G+A +KTV+ AEILK+R   LHQ T +
Sbjct: 38  MRVKEGSKIRNLMAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRL 97

Query: 351 SSVSIIDVWEPIEEG----------LVPVEMTRHVSMISITLSNRELNKDSPGYQAP 398
              S+ +VW+ +  G             + + ++V  ++I LS   L+   PGYQ P
Sbjct: 98  RYRSVREVWQSLPPGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQPP 154

[Close]

BLAST of Cp4.1LG15g01290 vs. Swiss-Prot
Match: RPP25_MOUSE (Ribonuclease P protein subunit p25 OS=Mus musculus GN=Rpp25 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 5.1e-08
Identity = 38/123 (30.89%), Postives = 60/123 (48.78%), Query Frame = 1


Query: 291 IRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILKKRTPQLHQETSI 350
           +R+     IRN + +A+  +     R IV    G+A +KTV+ AEILK+R   LHQ T +
Sbjct: 38  MRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRL 97

Query: 351 SSVSIIDVWEPIEEGLVP----------VEMTRHVSMISITLSNRELNKDSPGYQAPQFV 404
              S+ +VW+ +  G  P          + + ++V  ++I LS   L+    GYQ P   
Sbjct: 98  RYRSVREVWQSLPPGPTPGQTPSDPAASLSVLKNVPSLAILLSKDALDPRQLGYQPPNLS 157

[Close]

BLAST of Cp4.1LG15g01290 vs. TrEMBL
Match: A0A0A0L8R0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G624080 PE=4 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 2.3e-108
Identity = 214/274 (78.10%), Postives = 234/274 (85.40%), Query Frame = 1


Query: 1   MQQVLQWVFKETNEKDSTK----KKETSCDKGSSRSKEIVVSVSNHCGGSQRSKGFEGRR 60
           MQQVLQWVFKETNEK   +    KK TSCDKG++R+KEIVVS S  CG SQRSKGFEGR+
Sbjct: 75  MQQVLQWVFKETNEKQRERTQSTKKRTSCDKGTARTKEIVVSSS--CGNSQRSKGFEGRK 134

Query: 61  FDLKRLKSFALLCRKDIAKSCFYSTINIKRPRTTQGGFDNMHQYWIHKMKKED------- 120
           FDLK+LKSFALLCRKDI+KSCFYSTINIKRPRT   GFDNM QYWI KMKKED       
Sbjct: 135 FDLKKLKSFALLCRKDISKSCFYSTINIKRPRTQ--GFDNMQQYWIQKMKKEDVTRGIIE 194

Query: 121 IGQKVDSCSVHAGTKVLPITDATLVEQCGSKGVKKVVANGESKTKGKSRVKELLRWAMAS 180
           IGQK DS  VHAGTKVLPITDATL EQC +K  KKV+ANGE+KTK KSR+KELLRWAMAS
Sbjct: 195 IGQKADS--VHAGTKVLPITDATLAEQCSNKSEKKVLANGENKTKAKSRMKELLRWAMAS 254

Query: 181 RSEKGGKFITGKVSRMRNRGTLHTSLDDDRASNDSPKISFRWEAESCSSISSAYTSVSGA 240
           RSEKGGKFITGKVS++RNR TL   L+DD+ SNDSPKISFRWEAESCSSISSAY+S+S  
Sbjct: 255 RSEKGGKFITGKVSQLRNRATLKAGLNDDQESNDSPKISFRWEAESCSSISSAYSSMSAV 314

Query: 241 SSFKNCSITLNSTAIHEMNRYYPRKGSWITTDSE 264
           S FKNCSITLNSTAIHE+N+YYPR+GSWITTDSE
Sbjct: 315 SPFKNCSITLNSTAIHEINQYYPRRGSWITTDSE 342

[Close]

BLAST of Cp4.1LG15g01290 vs. TrEMBL
Match: W9SB58_9ROSA (Alba-like protein C9orf23-like protein OS=Morus notabilis GN=L484_015196 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 4.5e-64
Identity = 164/255 (64.31%), Postives = 184/255 (72.16%), Query Frame = 1


Query: 271 MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 330
           MDRYQ+VEKPKPESPINENEIRIT+QG IRNYI+YA+TLLQ+KR R+IVLKAMGQAISKT
Sbjct: 1   MDRYQRVEKPKPESPINENEIRITTQGVIRNYISYATTLLQEKRARDIVLKAMGQAISKT 60

Query: 331 VSIAEILKKRTPQLHQETSISSVSIIDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKD 390
           V+IAEI+KKR P+LHQET+ISSVSI DVWEPIEEGLVPVEMTRHVSMISITLS +EL+K 
Sbjct: 61  VAIAEIIKKRIPRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSTKELDKT 120

Query: 391 SPGYQAPQFVEQPKQQYKQQQQ-QQPRQSRPYYNAIHMVKAEVEVEGEGVVGAEVDMETT 450
           SPGYQAP  ++Q + Q   QQQ QQP+Q+R  YNAI+        E  G VG  V     
Sbjct: 121 SPGYQAPYQMDQSRPQPNYQQQIQQPKQARAPYNAIN-------EEAVGGVGIGV----- 180

Query: 451 KGDMETTRADMAITKADMATIKVDLVATKVVALAATKATIKIIVGTRIGVEAVGEAEVGH 510
              M TTR  M ITK DM TIKV               TIKI+V  +IG EA  EAEVG 
Sbjct: 181 --GMATTRVGMEITKEDMETIKV------------VMGTIKIMVDIQIGAEA-EEAEVGA 228

Query: 511 IV--ELAMIEAEWGG 523
           IV  E  M EAE  G
Sbjct: 241 IVVQEQDMKEAEVEG 228

[Close]

BLAST of Cp4.1LG15g01290 vs. TrEMBL
Match: A0A061DMM4_THECC (Alba DNA/RNA-binding protein isoform 1 OS=Theobroma cacao GN=TCM_002984 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 3.2e-62
Identity = 130/156 (83.33%), Postives = 142/156 (91.03%), Query Frame = 1


Query: 271 MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 330
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYI YA  LLQDKRV+EIVLKAMGQAISKT
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYINYAIALLQDKRVKEIVLKAMGQAISKT 60

Query: 331 VSIAEILKKRTPQLHQETSISSVSIIDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKD 390
           V+IAEI+KKR P+LHQ+T+ISSVSI DVWEPIEEGLVPVEMTRHVSMISITLS RELNK+
Sbjct: 61  VAIAEIIKKRIPRLHQDTAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSARELNKN 120

Query: 391 SPGYQAPQFVEQPKQQYKQQQQQQPRQSRPYYNAIH 427
           S GYQAP +VEQPK QY  QQQQ P+Q+R  YNA++
Sbjct: 121 SAGYQAPHYVEQPKPQYHYQQQQPPKQARIPYNAVN 156

[Close]

BLAST of Cp4.1LG15g01290 vs. TrEMBL
Match: A0A061DPE3_THECC (Alba DNA/RNA-binding protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_002984 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 3.2e-62
Identity = 130/156 (83.33%), Postives = 142/156 (91.03%), Query Frame = 1


Query: 271 MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 330
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYI YA  LLQDKRV+EIVLKAMGQAISKT
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYINYAIALLQDKRVKEIVLKAMGQAISKT 60

Query: 331 VSIAEILKKRTPQLHQETSISSVSIIDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKD 390
           V+IAEI+KKR P+LHQ+T+ISSVSI DVWEPIEEGLVPVEMTRHVSMISITLS RELNK+
Sbjct: 61  VAIAEIIKKRIPRLHQDTAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSARELNKN 120

Query: 391 SPGYQAPQFVEQPKQQYKQQQQQQPRQSRPYYNAIH 427
           S GYQAP +VEQPK QY  QQQQ P+Q+R  YNA++
Sbjct: 121 SAGYQAPHYVEQPKPQYHYQQQQPPKQARIPYNAVN 156

[Close]

BLAST of Cp4.1LG15g01290 vs. TrEMBL
Match: A0A061DVC5_THECC (Alba DNA/RNA-binding protein isoform 4 (Fragment) OS=Theobroma cacao GN=TCM_002984 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 3.2e-62
Identity = 130/156 (83.33%), Postives = 142/156 (91.03%), Query Frame = 1


Query: 271 MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 330
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYI YA  LLQDKRV+EIVLKAMGQAISKT
Sbjct: 62  MDRYQKVEKPKPESPINENEIRITSQGAIRNYINYAIALLQDKRVKEIVLKAMGQAISKT 121

Query: 331 VSIAEILKKRTPQLHQETSISSVSIIDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKD 390
           V+IAEI+KKR P+LHQ+T+ISSVSI DVWEPIEEGLVPVEMTRHVSMISITLS RELNK+
Sbjct: 122 VAIAEIIKKRIPRLHQDTAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSARELNKN 181

Query: 391 SPGYQAPQFVEQPKQQYKQQQQQQPRQSRPYYNAIH 427
           S GYQAP +VEQPK QY  QQQQ P+Q+R  YNA++
Sbjct: 182 SAGYQAPHYVEQPKPQYHYQQQQPPKQARIPYNAVN 217

[Close]

BLAST of Cp4.1LG15g01290 vs. TAIR10
Match: AT3G07030.1 (AT3G07030.1 Alba DNA/RNA-binding protein)

HSP 1 Score: 223.0 bits (567), Expect = 4.3e-58
Identity = 139/225 (61.78%), Postives = 165/225 (73.33%), Query Frame = 1


Query: 271 MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 330
           MDRYQ+V KPKPESPINENEIRITS+G IRNYI+YA++LLQ+K V++IVLKAMGQAISKT
Sbjct: 1   MDRYQRVAKPKPESPINENEIRITSKGLIRNYISYATSLLQEKSVKDIVLKAMGQAISKT 60

Query: 331 VSIAEILKKRTPQLHQETSISSVSIIDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKD 390
           V+I+EILK + P LHQ+ +ISS+SI DVWEP EEGL PVE+TRHVSMISITLS  ELNKD
Sbjct: 61  VAISEILKNKIPGLHQDIAISSISITDVWEPTEEGLFPVELTRHVSMISITLSLSELNKD 120

Query: 391 SPGYQAPQFVEQPKQQYKQQQQQQPRQSRPYYNAIHMVKAEVEVEGEGVVGAEVDMETTK 450
           SPGYQAP   +Q K QY   Q QQ RQ+R  YNA      E EV  EG  G EVDMETTK
Sbjct: 121 SPGYQAPAQSDQSKPQY---QPQQGRQARLPYNA---YGEEGEVVAEGEAGEEVDMETTK 180

Query: 451 GDM-ETTRADMAITKADMATIKVDLVATKVVALAATKATIKIIVG 495
           G M E T+  +   K  + T+KV  + T+  A+      + I+ G
Sbjct: 181 GVMKEKTKGTI---KKIIKTMKVG-IQTRAEAVDVVDEAMAIVGG 215

[Close]

BLAST of Cp4.1LG15g01290 vs. TAIR10
Match: AT1G76010.1 (AT1G76010.1 Alba DNA/RNA-binding protein)

HSP 1 Score: 169.9 bits (429), Expect = 4.4e-42
Identity = 87/134 (64.93%), Postives = 103/134 (76.87%), Query Frame = 1


Query: 271 MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 330
           MD+YQ+V KPK ++PI+ NEIRITSQG  RNYITYA TLLQDK   E+V KAMG+AI+KT
Sbjct: 1   MDKYQRVVKPKADTPIDANEIRITSQGRARNYITYAMTLLQDKGSTEVVFKAMGRAINKT 60

Query: 331 VSIAEILKKRTPQLHQETSISSVSIIDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKD 390
           V+I E++K+R P LHQ TSI S  I D WEP EEGL+P+E TRHVSMI+ITLS  ELN  
Sbjct: 61  VTIVELIKRRIPDLHQNTSIGSTDITDTWEPTEEGLLPLETTRHVSMITITLSKIELNTS 120

Query: 391 SPGYQAPQFVEQPK 405
           S GYQ P  +E  K
Sbjct: 121 SVGYQCPIPIELVK 134

[Close]

BLAST of Cp4.1LG15g01290 vs. TAIR10
Match: AT1G20220.1 (AT1G20220.1 Alba DNA/RNA-binding protein)

HSP 1 Score: 161.8 bits (408), Expect = 1.2e-39
Identity = 81/134 (60.45%), Postives = 100/134 (74.63%), Query Frame = 1


Query: 271 MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 330
           MD+YQ+VEKPK ++PI ENEIRITS G  RNYITYA  LLQ+ +  E++ KAMG+AI+K+
Sbjct: 1   MDKYQRVEKPKADTPIAENEIRITSMGRARNYITYAMALLQENKSNEVIFKAMGRAINKS 60

Query: 331 VSIAEILKKRTPQLHQETSISSVSIIDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKD 390
           V+I E++K+R P LHQ TSI S  I D WEP EEGL  +E TRHVSMI+ITLS  +LN  
Sbjct: 61  VTIVELIKRRIPGLHQITSIGSTDITDTWEPTEEGLQTIETTRHVSMITITLSKEQLNTS 120

Query: 391 SPGYQAPQFVEQPK 405
           S GYQ P  +E  K
Sbjct: 121 SVGYQCPIPIEMVK 134

[Close]

BLAST of Cp4.1LG15g01290 vs. TAIR10
Match: AT3G24750.1 (AT3G24750.1 unknown protein)

HSP 1 Score: 53.1 bits (126), Expect = 5.9e-07
Identity = 44/122 (36.07%), Postives = 68/122 (55.74%), Query Frame = 1


Query: 152 KTKGK---SRVKELLRWAMASRSEKGGKFITGKV-SRMRNRGTL------HTSLDDDRAS 211
           ++KGK   SR+KEL++WA A++S+K  KF T K+   ++NR  L      +      R S
Sbjct: 44  QSKGKATLSRMKELIKWAAAAKSDKAVKFFTPKIMMELKNRRKLKMMREVNEEESTKRMS 103

Query: 212 NDSPKISFRWEAESCSSISSAYTSVSGASSFKNCSITLNSTAIHEMNRYYPRKGSWITTD 264
           + S  IS RWE+    + +S+   +S  SS     ++L+ T ++   R   RK +WITTD
Sbjct: 104 SVSANISLRWESSESCTTNSSSDHISIVSS-PGILVSLSPTPLY---RCRSRKCNWITTD 161

[Close]

BLAST of Cp4.1LG15g01290 vs. NCBI nr
Match: gi|778682082|ref|XP_004152019.2| (PREDICTED: uncharacterized protein LOC101208427 [Cucumis sativus])

HSP 1 Score: 401.0 bits (1029), Expect = 3.3e-108
Identity = 214/274 (78.10%), Postives = 234/274 (85.40%), Query Frame = 1


Query: 1   MQQVLQWVFKETNEKDSTK----KKETSCDKGSSRSKEIVVSVSNHCGGSQRSKGFEGRR 60
           MQQVLQWVFKETNEK   +    KK TSCDKG++R+KEIVVS S  CG SQRSKGFEGR+
Sbjct: 17  MQQVLQWVFKETNEKQRERTQSTKKRTSCDKGTARTKEIVVSSS--CGNSQRSKGFEGRK 76

Query: 61  FDLKRLKSFALLCRKDIAKSCFYSTINIKRPRTTQGGFDNMHQYWIHKMKKED------- 120
           FDLK+LKSFALLCRKDI+KSCFYSTINIKRPRT   GFDNM QYWI KMKKED       
Sbjct: 77  FDLKKLKSFALLCRKDISKSCFYSTINIKRPRTQ--GFDNMQQYWIQKMKKEDVTRGIIE 136

Query: 121 IGQKVDSCSVHAGTKVLPITDATLVEQCGSKGVKKVVANGESKTKGKSRVKELLRWAMAS 180
           IGQK DS  VHAGTKVLPITDATL EQC +K  KKV+ANGE+KTK KSR+KELLRWAMAS
Sbjct: 137 IGQKADS--VHAGTKVLPITDATLAEQCSNKSEKKVLANGENKTKAKSRMKELLRWAMAS 196

Query: 181 RSEKGGKFITGKVSRMRNRGTLHTSLDDDRASNDSPKISFRWEAESCSSISSAYTSVSGA 240
           RSEKGGKFITGKVS++RNR TL   L+DD+ SNDSPKISFRWEAESCSSISSAY+S+S  
Sbjct: 197 RSEKGGKFITGKVSQLRNRATLKAGLNDDQESNDSPKISFRWEAESCSSISSAYSSMSAV 256

Query: 241 SSFKNCSITLNSTAIHEMNRYYPRKGSWITTDSE 264
           S FKNCSITLNSTAIHE+N+YYPR+GSWITTDSE
Sbjct: 257 SPFKNCSITLNSTAIHEINQYYPRRGSWITTDSE 284

[Close]

BLAST of Cp4.1LG15g01290 vs. NCBI nr
Match: gi|700203207|gb|KGN58340.1| (hypothetical protein Csa_3G624080 [Cucumis sativus])

HSP 1 Score: 401.0 bits (1029), Expect = 3.3e-108
Identity = 214/274 (78.10%), Postives = 234/274 (85.40%), Query Frame = 1


Query: 1   MQQVLQWVFKETNEKDSTK----KKETSCDKGSSRSKEIVVSVSNHCGGSQRSKGFEGRR 60
           MQQVLQWVFKETNEK   +    KK TSCDKG++R+KEIVVS S  CG SQRSKGFEGR+
Sbjct: 75  MQQVLQWVFKETNEKQRERTQSTKKRTSCDKGTARTKEIVVSSS--CGNSQRSKGFEGRK 134

Query: 61  FDLKRLKSFALLCRKDIAKSCFYSTINIKRPRTTQGGFDNMHQYWIHKMKKED------- 120
           FDLK+LKSFALLCRKDI+KSCFYSTINIKRPRT   GFDNM QYWI KMKKED       
Sbjct: 135 FDLKKLKSFALLCRKDISKSCFYSTINIKRPRTQ--GFDNMQQYWIQKMKKEDVTRGIIE 194

Query: 121 IGQKVDSCSVHAGTKVLPITDATLVEQCGSKGVKKVVANGESKTKGKSRVKELLRWAMAS 180
           IGQK DS  VHAGTKVLPITDATL EQC +K  KKV+ANGE+KTK KSR+KELLRWAMAS
Sbjct: 195 IGQKADS--VHAGTKVLPITDATLAEQCSNKSEKKVLANGENKTKAKSRMKELLRWAMAS 254

Query: 181 RSEKGGKFITGKVSRMRNRGTLHTSLDDDRASNDSPKISFRWEAESCSSISSAYTSVSGA 240
           RSEKGGKFITGKVS++RNR TL   L+DD+ SNDSPKISFRWEAESCSSISSAY+S+S  
Sbjct: 255 RSEKGGKFITGKVSQLRNRATLKAGLNDDQESNDSPKISFRWEAESCSSISSAYSSMSAV 314

Query: 241 SSFKNCSITLNSTAIHEMNRYYPRKGSWITTDSE 264
           S FKNCSITLNSTAIHE+N+YYPR+GSWITTDSE
Sbjct: 315 SPFKNCSITLNSTAIHEINQYYPRRGSWITTDSE 342

[Close]

BLAST of Cp4.1LG15g01290 vs. NCBI nr
Match: gi|659109027|ref|XP_008454510.1| (PREDICTED: uncharacterized protein LOC103494908 [Cucumis melo])

HSP 1 Score: 387.5 bits (994), Expect = 3.8e-104
Identity = 211/275 (76.73%), Postives = 231/275 (84.00%), Query Frame = 1


Query: 1   MQQVLQWVFKETNEKDSTK----KKETSCDKGSSRSKEIVVSVSNHCGGSQRSKGFEGRR 60
           MQQVLQWVFKETNEK   +    KK TSCDKG+ R+KEIVVS  + CG SQ SKGFEGR+
Sbjct: 75  MQQVLQWVFKETNEKQRERTQSTKKGTSCDKGTGRTKEIVVS--SPCGNSQGSKGFEGRK 134

Query: 61  FDLKRLKSFALLCRKDIAKSCFYSTINIKRPRTTQGGFDNMHQYWIHKMKKEDI------ 120
           FDLK+LK++ALLCRKDIAKSCFYSTINIKRPRT   GFDNM QYWI KMKKEDI      
Sbjct: 135 FDLKKLKTYALLCRKDIAKSCFYSTINIKRPRTQ--GFDNMQQYWIQKMKKEDIARGIIE 194

Query: 121 -GQKVDSCSVHAGTKVLPITDATLVEQCGSKGVKKVVANGESKTKGKSRVKELLRWAMAS 180
            GQK DS  VHAGTKVLPITDATL EQC +K  KKV+ANGE+KTK KSR+KELLRWAMAS
Sbjct: 195 IGQKADS--VHAGTKVLPITDATLAEQCSNKSEKKVLANGENKTKAKSRMKELLRWAMAS 254

Query: 181 RSEKGGKFITGKVSRMRNRGTLHTSLDDDRASNDSPKISFRWEAESCSSISSAYTSVSGA 240
           RSEKGGKFITGKVSR+RNR TL   LDDD  SNDSPKISFRWEAESCSSISSAY+S+S  
Sbjct: 255 RSEKGGKFITGKVSRLRNRATLKAGLDDDEESNDSPKISFRWEAESCSSISSAYSSMSAV 314

Query: 241 SS-FKNCSITLNSTAIHEMNRYYPRKGSWITTDSE 264
           S+ FKNCSITLNSTAI+E+N+ YPR+GSWITTDSE
Sbjct: 315 SAPFKNCSITLNSTAINEINQCYPRRGSWITTDSE 343

[Close]

BLAST of Cp4.1LG15g01290 vs. NCBI nr
Match: gi|703149857|ref|XP_010109707.1| (Alba-like protein C9orf23-like protein [Morus notabilis])

HSP 1 Score: 253.8 bits (647), Expect = 6.5e-64
Identity = 164/255 (64.31%), Postives = 184/255 (72.16%), Query Frame = 1


Query: 271 MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 330
           MDRYQ+VEKPKPESPINENEIRIT+QG IRNYI+YA+TLLQ+KR R+IVLKAMGQAISKT
Sbjct: 1   MDRYQRVEKPKPESPINENEIRITTQGVIRNYISYATTLLQEKRARDIVLKAMGQAISKT 60

Query: 331 VSIAEILKKRTPQLHQETSISSVSIIDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKD 390
           V+IAEI+KKR P+LHQET+ISSVSI DVWEPIEEGLVPVEMTRHVSMISITLS +EL+K 
Sbjct: 61  VAIAEIIKKRIPRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSTKELDKT 120

Query: 391 SPGYQAPQFVEQPKQQYKQQQQ-QQPRQSRPYYNAIHMVKAEVEVEGEGVVGAEVDMETT 450
           SPGYQAP  ++Q + Q   QQQ QQP+Q+R  YNAI+        E  G VG  V     
Sbjct: 121 SPGYQAPYQMDQSRPQPNYQQQIQQPKQARAPYNAIN-------EEAVGGVGIGV----- 180

Query: 451 KGDMETTRADMAITKADMATIKVDLVATKVVALAATKATIKIIVGTRIGVEAVGEAEVGH 510
              M TTR  M ITK DM TIKV               TIKI+V  +IG EA  EAEVG 
Sbjct: 181 --GMATTRVGMEITKEDMETIKV------------VMGTIKIMVDIQIGAEA-EEAEVGA 228

Query: 511 IV--ELAMIEAEWGG 523
           IV  E  M EAE  G
Sbjct: 241 IVVQEQDMKEAEVEG 228

[Close]

BLAST of Cp4.1LG15g01290 vs. NCBI nr
Match: gi|659109023|ref|XP_008454508.1| (PREDICTED: RNA-binding protein FUS-like isoform X1 [Cucumis melo])

HSP 1 Score: 253.1 bits (645), Expect = 1.1e-63
Identity = 136/160 (85.00%), Postives = 144/160 (90.00%), Query Frame = 1


Query: 271 MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 330
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQ+KRVREIVLKAMGQAISK 
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKA 60

Query: 331 VSIAEILKKRTPQLHQETSISSVSIIDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKD 390
           V+IAEILKKR  +LHQET+ISSVSI DVWEPIEEGLVPVEMTRHVSMISITLSNRELNK+
Sbjct: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN 120

Query: 391 SPGYQAPQFVEQPKQQYKQQ----QQQQPRQSRPYYNAIH 427
           SPGYQAP FVEQPKQQY  Q    Q   PRQ R Y+NA++
Sbjct: 121 SPGYQAPHFVEQPKQQYNNQQPLPQPPPPRQPRVYHNAVN 160

The following BLAST results are available for this feature:

BLAST of Cp4.1LG15g01290 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RP25L_HUMAN	9.8e-12	33.82	Ribonuclease P protein subunit p25-like protein OS=Homo sapiens GN=RPP25L PE=1 S...	[more]
RP25L_MOUSE	1.3e-11	35.83	Ribonuclease P protein subunit p25-like protein OS=Mus musculus GN=Rpp25l PE=1 S...	[more]
RP25L_BOVIN	1.4e-10	32.35	Ribonuclease P protein subunit p25-like protein OS=Bos taurus GN=RPP25L PE=2 SV=...	[more]
RPP25_HUMAN	2.3e-08	31.62	Ribonuclease P protein subunit p25 OS=Homo sapiens GN=RPP25 PE=1 SV=1	[more]
RPP25_MOUSE	5.1e-08	30.89	Ribonuclease P protein subunit p25 OS=Mus musculus GN=Rpp25 PE=2 SV=1	[more]

BLAST of Cp4.1LG15g01290 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8R0_CUCSA	2.3e-108	78.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G624080 PE=4 SV=1	[more]
W9SB58_9ROSA	4.5e-64	64.31	Alba-like protein C9orf23-like protein OS=Morus notabilis GN=L484_015196 PE=4 SV...	[more]
A0A061DMM4_THECC	3.2e-62	83.33	Alba DNA/RNA-binding protein isoform 1 OS=Theobroma cacao GN=TCM_002984 PE=4 SV=...	[more]
A0A061DPE3_THECC	3.2e-62	83.33	Alba DNA/RNA-binding protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_0029...	[more]
A0A061DVC5_THECC	3.2e-62	83.33	Alba DNA/RNA-binding protein isoform 4 (Fragment) OS=Theobroma cacao GN=TCM_0029...	[more]

BLAST of Cp4.1LG15g01290 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G07030.1	4.3e-58	61.78	Alba DNA/RNA-binding protein	[more]
AT1G76010.1	4.4e-42	64.93	Alba DNA/RNA-binding protein	[more]
AT1G20220.1	1.2e-39	60.45	Alba DNA/RNA-binding protein	[more]
AT3G24750.1	5.9e-07	36.07	unknown protein	[more]

BLAST of Cp4.1LG15g01290 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778682082\|ref\|XP_004152019.2\|	3.3e-108	78.10	PREDICTED: uncharacterized protein LOC101208427 [Cucumis sativus]	[more]
gi\|700203207\|gb\|KGN58340.1\|	3.3e-108	78.10	hypothetical protein Csa_3G624080 [Cucumis sativus]	[more]
gi\|659109027\|ref\|XP_008454510.1\|	3.8e-104	76.73	PREDICTED: uncharacterized protein LOC103494908 [Cucumis melo]	[more]
gi\|703149857\|ref\|XP_010109707.1\|	6.5e-64	64.31	Alba-like protein C9orf23-like protein [Morus notabilis]	[more]
gi\|659109023\|ref\|XP_008454508.1\|	1.1e-63	85.00	PREDICTED: RNA-binding protein FUS-like isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002775	DNA/RNA-bd_Alba-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG15g01290.1	Cp4.1LG15g01290.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002775	DNA/RNA-binding protein Alba-like	GENE3D	G3DSA:3.30.110.20		coord: 280..383 score: 2.4
IPR002775	DNA/RNA-binding protein Alba-like	PFAM	PF01918	Alba	coord: 289..351 score: 8.1
IPR002775	DNA/RNA-binding protein Alba-like	unknown	SSF82704	AlbA-like	coord: 286..386 score: 5.49
None	No IPR available	PANTHER	PTHR13516	RIBONUCLEASE P SUBUNIT P25	coord: 272..438 score: 5.2E
None	No IPR available	PANTHER	PTHR13516:SF3	ALBA DNA/RNA-BINDING PROTEIN	coord: 272..438 score: 5.2E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG15g01290	CmaCh02G016920	Cucurbita maxima (Rimu)	cmacpeB615
Cp4.1LG15g01290	CmoCh19G001620	Cucurbita moschata (Rifu)	cmocpeB481
Cp4.1LG15g01290	MELO3C018065	Melon (DHL92) v3.5.1	cpemeB231
Cp4.1LG15g01290	MELO3C018065.2	Melon (DHL92) v3.6.1	cpemedB273
Cp4.1LG15g01290	Carg08911	Silver-seed gourd	carcpeB1094

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG15g01290	Wax gourd	cpewgoB0327
Cp4.1LG15g01290	Cucurbita pepo (Zucchini)	cpecpeB155
Cp4.1LG15g01290	Cucurbita pepo (Zucchini)	cpecpeB258
Cp4.1LG15g01290	Cucurbita pepo (Zucchini)	cpecpeB265
Cp4.1LG15g01290	Cucurbita pepo (Zucchini)	cpecpeB273
Cp4.1LG15g01290	Cucurbita pepo (Zucchini)	cpecpeB284
Cp4.1LG15g01290	Cucumber (Gy14) v1	cgycpeB0379
Cp4.1LG15g01290	Cucurbita maxima (Rimu)	cmacpeB522
Cp4.1LG15g01290	Cucurbita moschata (Rifu)	cmocpeB564
Cp4.1LG15g01290	Cucurbita moschata (Rifu)	cmocpeB848
Cp4.1LG15g01290	Wild cucumber (PI 183967)	cpecpiB242
Cp4.1LG15g01290	Cucumber (Chinese Long) v2	cpecuB238
Cp4.1LG15g01290	Bottle gourd (USVL1VR-Ls)	cpelsiB209
Cp4.1LG15g01290	Watermelon (Charleston Gray)	cpewcgB240
Cp4.1LG15g01290	Watermelon (97103) v1	cpewmB258
Cp4.1LG15g01290	Cucumber (Gy14) v2	cgybcpeB331
Cp4.1LG15g01290	Cucumber (Gy14) v2	cgybcpeB341
Cp4.1LG15g01290	Melon (DHL92) v3.6.1	cpemedB283
Cp4.1LG15g01290	Silver-seed gourd	carcpeB0101
Cp4.1LG15g01290	Silver-seed gourd	carcpeB0124
Cp4.1LG15g01290	Silver-seed gourd	carcpeB0332
Cp4.1LG15g01290	Silver-seed gourd	carcpeB1329
Cp4.1LG15g01290	Cucumber (Chinese Long) v3	cpecucB0297
Cp4.1LG15g01290	Cucumber (Chinese Long) v3	cpecucB0308