Cp4.1LG14g10730 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG14g10730
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	IQ-domain 20, putative
Location	Cp4.1LG14 : 8772549 .. 8773169 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCCTGTGAAGAACAAGAAGTATGGGGATTACAAGAAACTGGTTCAGAAGAGCTCGAAGGAAGCTGAGTAGAAAAGCCAACAGAGACATTGTTTTTCTGCAGACAAATGCCAGCCCAAATCATGATGAAGAAGAAACCAATCTCACATTAGCACAACAACAAGAAGATGAAGAACATGAAGAAGAAGAAGAAGAAGAAGATGATGATGATGAAGATGAAGAATTTACATATGATTCAAGGATACCCAGTTTTCAAAACAAAGATTTGTCTATAGAGGAAGTGGCAGCCATCAAAATCCAAGCTTGTTTCAGAGGCCATCTTGTATTATATCTTACCATGACATATTTGTTCATTGAATTCTTGATGAGTTTGTCTATGCTAAAGTAGGCTACATTTAGTCCTTTGATGTATTATCAACACCTACGCTTGTTGTTCAGGCAAGACGAGCATTTCAAGCACTAAGAAGCTTGGTGAAGCTGCAAGCACTGGCTCGAGGGGTGTGTGCGAGGAGGCAGGCGCGGGTAGCTCTTCAATTCATGCATGCATTGGTTCGATTGCAGGTTCGGGTTCGTGCTCGCCAGCTTCTGAACAGATACAGTGAAGAGTCTGATTATTGA

mRNA sequence

ATGATGCCTGTGAAGAACAAGAAGTATGGGGATTACAAGAAACTGGCAAGACGAGCATTTCAAGCACTAAGAAGCTTGGTGAAGCTGCAAGCACTGGCTCGAGGGGTGTGTGCGAGGAGGCAGGCGCGGGTAGCTCTTCAATTCATGCATGCATTGGTTCGATTGCAGGTTCGGGTTCGTGCTCGCCAGCTTCTGAACAGATACAGTGAAGAGTCTGATTATTGA

Coding sequence (CDS)

ATGATGCCTGTGAAGAACAAGAAGTATGGGGATTACAAGAAACTGGCAAGACGAGCATTTCAAGCACTAAGAAGCTTGGTGAAGCTGCAAGCACTGGCTCGAGGGGTGTGTGCGAGGAGGCAGGCGCGGGTAGCTCTTCAATTCATGCATGCATTGGTTCGATTGCAGGTTCGGGTTCGTGCTCGCCAGCTTCTGAACAGATACAGTGAAGAGTCTGATTATTGA

Protein sequence

MMPVKNKKYGDYKKLARRAFQALRSLVKLQALARGVCARRQARVALQFMHALVRLQVRVRARQLLNRYSEESDY

Homology

[Close]

BLAST of Cp4.1LG14g10730 vs. TrEMBL
Match: A0A0A0L4V7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G002470 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.1e-20
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 1


Query: 15  LARRAFQALRSLVKLQALARGVCARRQARVALQFMHALVRLQVRVRARQLLNRYSEESD 74
           LARRAFQALRSLVKLQALARGVCARRQAR+ALQFMHALVRLQVRVRARQLLNRYSEESD
Sbjct: 100 LARRAFQALRSLVKLQALARGVCARRQARIALQFMHALVRLQVRVRARQLLNRYSEESD 158

[Close]

BLAST of Cp4.1LG14g10730 vs. TrEMBL
Match: A0A067G7J6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g043949mg PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 7.3e-13
Identity = 44/57 (77.19%), Postives = 51/57 (89.47%), Query Frame = 1


Query: 15  LARRAFQALRSLVKLQALARGVCARRQARVALQFMHALVRLQVRVRARQLLNRYSEE 72
           LARRAF+ALRSLVKLQAL RGVC RRQ+RVA+  MHALVRLQVR+RARQLL+R + +
Sbjct: 83  LARRAFKALRSLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLSRQASQ 139

[Close]

BLAST of Cp4.1LG14g10730 vs. TrEMBL
Match: A0A061DF76_THECC (IQ-domain 20, putative OS=Theobroma cacao GN=TCM_000115 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 9.5e-13
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 1


Query: 15  LARRAFQALRSLVKLQALARGVCARRQARVALQFMHALVRLQVRVRARQLLNRYSEE 72
           LARRA+ ALRSLVKLQA+ARGV  R+QAR+ALQ MHALVRLQVRVRARQLL++YS +
Sbjct: 79  LARRAYGALRSLVKLQAVARGVYVRKQARIALQCMHALVRLQVRVRARQLLSKYSHD 135

[Close]

BLAST of Cp4.1LG14g10730 vs. TrEMBL
Match: V4RV21_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10027351mg PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.8e-12
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 1


Query: 15  LARRAFQALRSLVKLQALARGVCARRQARVALQFMHALVRLQVRVRARQLLN 67
           LARRAF+ALRSLVKLQAL RGVC RRQ+RVA+  MHALVRLQVRVRARQLL+
Sbjct: 83  LARRAFKALRSLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRVRARQLLS 134

[Close]

BLAST of Cp4.1LG14g10730 vs. TrEMBL
Match: B9SXK9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0017280 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.4e-11
Identity = 43/57 (75.44%), Postives = 48/57 (84.21%), Query Frame = 1


Query: 15  LARRAFQALRSLVKLQALARGVCARRQARVALQFMHALVRLQVRVRARQLLNRYSEE 72
           LARRAFQALRSLVK+QAL RG   R+Q R+AL  MHALVRLQVR+RARQLL R S+E
Sbjct: 156 LARRAFQALRSLVKVQALVRGAYVRKQTRIALHCMHALVRLQVRIRARQLLGRCSDE 212

[Close]

BLAST of Cp4.1LG14g10730 vs. TAIR10
Match: AT3G51380.1 (AT3G51380.1 IQ-domain 20)

HSP 1 Score: 74.3 bits (181), Expect = 3.5e-14
Identity = 42/52 (80.77%), Postives = 47/52 (90.38%), Query Frame = 1


Query: 15  LARRAFQALRSLVKLQALARGVCARRQARVALQFMHALVRLQVRVRARQLLN 67
           LARRAF+AL+SLVKLQA+ARGV  RRQAR+AL  MHAL RLQVRVRARQLL+
Sbjct: 51  LARRAFKALKSLVKLQAVARGVLVRRQARIALHCMHALARLQVRVRARQLLS 102

[Close]

BLAST of Cp4.1LG14g10730 vs. TAIR10
Match: AT3G22190.1 (AT3G22190.1 IQ-domain 5)

HSP 1 Score: 53.9 bits (128), Expect = 4.8e-08
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 1


Query: 15  LARRAFQALRSLVKLQALARGVCARRQARVALQFMHALVRLQVRVRARQLLNRYSEESD 74
           LARRA +AL+ LV+LQAL RG   R+QA V L+ M ALVR+Q RVRAR++      ES+
Sbjct: 102 LARRALRALKGLVRLQALVRGHAVRKQAAVTLRCMQALVRVQARVRARRVRLALELESE 160

[Close]

BLAST of Cp4.1LG14g10730 vs. TAIR10
Match: AT2G26180.1 (AT2G26180.1 IQ-domain 6)

HSP 1 Score: 51.6 bits (122), Expect = 2.4e-07
Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = 1


Query: 15  LARRAFQALRSLVKLQALARGVCARRQARVALQFMHALVRLQVRVRARQL 65
           LARRA +AL+ +V+LQAL RG   R+QA V L+ M ALVR+Q RVRAR++
Sbjct: 98  LARRALRALKGIVRLQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRV 147

[Close]

BLAST of Cp4.1LG14g10730 vs. TAIR10
Match: AT3G49260.3 (AT3G49260.3 IQ-domain 21)

HSP 1 Score: 51.2 bits (121), Expect = 3.1e-07
Identity = 30/50 (60.00%), Postives = 40/50 (80.00%), Query Frame = 1


Query: 15  LARRAFQALRSLVKLQALARGVCARRQARVALQFMHALVRLQVRVRARQL 65
           LARRA +AL+ LV+LQAL RG   R+QA++ ++ M ALVR+Q RVRAR+L
Sbjct: 134 LARRALRALKGLVRLQALVRGNHVRKQAQMTMKCMQALVRVQGRVRARRL 183

[Close]

BLAST of Cp4.1LG14g10730 vs. TAIR10
Match: AT3G52290.1 (AT3G52290.1 IQ-domain 3)

HSP 1 Score: 48.1 bits (113), Expect = 2.7e-06
Identity = 29/57 (50.88%), Postives = 40/57 (70.18%), Query Frame = 1


Query: 15  LARRAFQALRSLVKLQALARGVCARRQARVALQFMHALVRLQVRVRARQLLNRYSEE 72
           +ARRA +ALR LV+L++L +G C RRQA   LQ M  L R+Q ++R R+L  R SE+
Sbjct: 122 MARRALRALRGLVRLKSLVQGKCVRRQATSTLQSMQTLARVQYQIRERRL--RLSED 176

[Close]

BLAST of Cp4.1LG14g10730 vs. NCBI nr
Match: gi|778688269|ref|XP_004146164.2| (PREDICTED: protein IQ-DOMAIN 1 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 3.0e-20
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 1


Query: 15  LARRAFQALRSLVKLQALARGVCARRQARVALQFMHALVRLQVRVRARQLLNRYSEESD 74
           LARRAFQALRSLVKLQALARGVCARRQAR+ALQFMHALVRLQVRVRARQLLNRYSEESD
Sbjct: 100 LARRAFQALRSLVKLQALARGVCARRQARIALQFMHALVRLQVRVRARQLLNRYSEESD 158

[Close]

BLAST of Cp4.1LG14g10730 vs. NCBI nr
Match: gi|659095299|ref|XP_008448508.1| (PREDICTED: protein IQ-DOMAIN 31 [Cucumis melo])

HSP 1 Score: 104.4 bits (259), Expect = 8.9e-20
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 1


Query: 16 ARRAFQALRSLVKLQALARGVCARRQARVALQFMHALVRLQVRVRARQLLNRYSEESD 74
          ARRAFQALRSLVKLQALARGVCARRQAR+ALQFMHALVRLQVRVRARQLLNRYSEESD
Sbjct: 12 ARRAFQALRSLVKLQALARGVCARRQARIALQFMHALVRLQVRVRARQLLNRYSEESD 69

[Close]

BLAST of Cp4.1LG14g10730 vs. NCBI nr
Match: gi|568854747|ref|XP_006480981.1| (PREDICTED: uncharacterized protein LOC102617695 [Citrus sinensis])

HSP 1 Score: 82.0 bits (201), Expect = 4.7e-13
Identity = 46/57 (80.70%), Postives = 51/57 (89.47%), Query Frame = 1


Query: 15  LARRAFQALRSLVKLQALARGVCARRQARVALQFMHALVRLQVRVRARQLLNRYSEE 72
           LARRAF+ALRSLVKLQAL RGVC RRQ+RVA+  MHALVRLQVRVRARQLL+R S +
Sbjct: 83  LARRAFKALRSLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRVRARQLLSRCSND 139

[Close]

BLAST of Cp4.1LG14g10730 vs. NCBI nr
Match: gi|641852511|gb|KDO71376.1| (hypothetical protein CISIN_1g043949mg [Citrus sinensis])

HSP 1 Score: 80.9 bits (198), Expect = 1.0e-12
Identity = 44/57 (77.19%), Postives = 51/57 (89.47%), Query Frame = 1


Query: 15  LARRAFQALRSLVKLQALARGVCARRQARVALQFMHALVRLQVRVRARQLLNRYSEE 72
           LARRAF+ALRSLVKLQAL RGVC RRQ+RVA+  MHALVRLQVR+RARQLL+R + +
Sbjct: 83  LARRAFKALRSLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLSRQASQ 139

[Close]

BLAST of Cp4.1LG14g10730 vs. NCBI nr
Match: gi|590702235|ref|XP_007046573.1| (IQ-domain 20, putative [Theobroma cacao])

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-12
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 1


Query: 15  LARRAFQALRSLVKLQALARGVCARRQARVALQFMHALVRLQVRVRARQLLNRYSEE 72
           LARRA+ ALRSLVKLQA+ARGV  R+QAR+ALQ MHALVRLQVRVRARQLL++YS +
Sbjct: 79  LARRAYGALRSLVKLQAVARGVYVRKQARIALQCMHALVRLQVRVRARQLLSKYSHD 135

The following BLAST results are available for this feature:

BLAST of Cp4.1LG14g10730 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG14g10730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4V7_CUCSA	2.1e-20	98.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G002470 PE=4 SV=1	[more]
A0A067G7J6_CITSI	7.3e-13	77.19	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g043949mg PE=4 SV=1	[more]
A0A061DF76_THECC	9.5e-13	78.95	IQ-domain 20, putative OS=Theobroma cacao GN=TCM_000115 PE=4 SV=1	[more]
V4RV21_9ROSI	2.8e-12	84.62	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10027351mg PE=...	[more]
B9SXK9_RICCO	1.4e-11	75.44	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0017280 PE=4 SV=1	[more]

BLAST of Cp4.1LG14g10730 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G51380.1	3.5e-14	80.77	IQ-domain 20	[more]
AT3G22190.1	4.8e-08	55.93	IQ-domain 5	[more]
AT2G26180.1	2.4e-07	60.00	IQ-domain 6	[more]
AT3G49260.3	3.1e-07	60.00	IQ-domain 21	[more]
AT3G52290.1	2.7e-06	50.88	IQ-domain 3	[more]

BLAST of Cp4.1LG14g10730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778688269\|ref\|XP_004146164.2\|	3.0e-20	98.31	PREDICTED: protein IQ-DOMAIN 1 [Cucumis sativus]	[more]
gi\|659095299\|ref\|XP_008448508.1\|	8.9e-20	98.28	PREDICTED: protein IQ-DOMAIN 31 [Cucumis melo]	[more]
gi\|568854747\|ref\|XP_006480981.1\|	4.7e-13	80.70	PREDICTED: uncharacterized protein LOC102617695 [Citrus sinensis]	[more]
gi\|641852511\|gb\|KDO71376.1\|	1.0e-12	77.19	hypothetical protein CISIN_1g043949mg [Citrus sinensis]	[more]
gi\|590702235\|ref\|XP_007046573.1\|	1.4e-12	78.95	IQ-domain 20, putative [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR000048	IQ_motif_EF-hand-BS

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009611	response to wounding
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004867	serine-type endopeptidase inhibitor activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG14g10730.1	Cp4.1LG14g10730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000048	IQ motif, EF-hand binding site	PROFILE	PS50096	IQ	coord: 24..51 score: 7
None	No IPR available	PANTHER	PTHR32295	FAMILY NOT NAMED	coord: 15..71 score: 3.0
None	No IPR available	PANTHER	PTHR32295:SF39	SUBFAMILY NOT NAMED	coord: 15..71 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG14g10730	Cucsa.322930	Cucumber (Gy14) v1	cgycpeB0845
Cp4.1LG14g10730	CmaCh16G012600	Cucurbita maxima (Rimu)	cmacpeB345
Cp4.1LG14g10730	CmoCh16G013090	Cucurbita moschata (Rifu)	cmocpeB308
Cp4.1LG14g10730	CmoCh06G001340	Cucurbita moschata (Rifu)	cmocpeB769
Cp4.1LG14g10730	Cla008929	Watermelon (97103) v1	cpewmB202
Cp4.1LG14g10730	Csa3G002470	Cucumber (Chinese Long) v2	cpecuB212
Cp4.1LG14g10730	ClCG10G000420	Watermelon (Charleston Gray)	cpewcgB193
Cp4.1LG14g10730	CSPI03G00430	Wild cucumber (PI 183967)	cpecpiB215
Cp4.1LG14g10730	Lsi07G010740	Bottle gourd (USVL1VR-Ls)	cpelsiB183
Cp4.1LG14g10730	CsaV3_3G000450	Cucumber (Chinese Long) v3	cpecucB0255
Cp4.1LG14g10730	Bhi11G000239	Wax gourd	cpewgoB0278
Cp4.1LG14g10730	CsGy3G000400	Cucumber (Gy14) v2	cgybcpeB325
Cp4.1LG14g10730	Carg19450	Silver-seed gourd	carcpeB0601
Cp4.1LG14g10730	Carg01192	Silver-seed gourd	carcpeB0223

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG14g10730	Wax gourd	cpewgoB0303
Cp4.1LG14g10730	Cucurbita pepo (Zucchini)	cpecpeB241
Cp4.1LG14g10730	Cucurbita pepo (Zucchini)	cpecpeB244
Cp4.1LG14g10730	Cucurbita pepo (Zucchini)	cpecpeB252
Cp4.1LG14g10730	Cucumber (Gy14) v1	cgycpeB0036
Cp4.1LG14g10730	Cucurbita maxima (Rimu)	cmacpeB815
Cp4.1LG14g10730	Cucurbita maxima (Rimu)	cmacpeB872
Cp4.1LG14g10730	Cucurbita moschata (Rifu)	cmocpeB091
Cp4.1LG14g10730	Cucurbita moschata (Rifu)	cmocpeB608
Cp4.1LG14g10730	Wild cucumber (PI 183967)	cpecpiB230
Cp4.1LG14g10730	Cucumber (Chinese Long) v2	cpecuB228
Cp4.1LG14g10730	Bottle gourd (USVL1VR-Ls)	cpelsiB165
Cp4.1LG14g10730	Watermelon (Charleston Gray)	cpewcgB201
Cp4.1LG14g10730	Watermelon (97103) v1	cpewmB230
Cp4.1LG14g10730	Melon (DHL92) v3.5.1	cpemeB184
Cp4.1LG14g10730	Melon (DHL92) v3.5.1	cpemeB206
Cp4.1LG14g10730	Melon (DHL92) v3.6.1	cpemedB231
Cp4.1LG14g10730	Melon (DHL92) v3.6.1	cpemedB249
Cp4.1LG14g10730	Silver-seed gourd	carcpeB0559
Cp4.1LG14g10730	Cucumber (Chinese Long) v3	cpecucB0282