Cp4.1LG14g09860 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG14g09860
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionDolichol phosphate-mannose biosynthesis regulatory protein
LocationCp4.1LG14 : 8264052 .. 8267492 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTATCGAATTTAGCCTTCCAAATTGGATCATTCTTCGGAAAAACCTTACCAGATTCTGTCTCATTCCTTAATCCTTCCAACATTTTCCGGCGACGAAGAATCGGGTATGAGCTTTATACCATGCTATCTGTATCACGTCGATTAACTCTTGCTGCTAAAATTTCGACGATCTTTGATCTTGGTTTCGATTTTTATTGCGCGAATTCCTTGATTTCATTTGAAAAAATGAGCTCTACAAATATTATTCTGTGTTTAGAGGAATTGAATTGAATTTTTAAGGTGGTAGTATGATTAGCTTGATCGATATTGGCTGCATCTGTTTACTATCTCCAGCACCATTAGATTCAATTTCTTCACATTGCTCTTTTTTCCCTTAGAAGTGTTGAAGATTAGCAGGACTCTTCGTGAAAACTAAATAATGTGAGCATAAACCAATTTGGTGAAGAAAAATTACAGAAGAAATAACAGACGGTATGAAGATTGTTTGTGATTAGATTGCTTCATGACACCATACGCAATGTGCATTTTTGGTTCTAGAATTTAGCAGTTGTCTGCAAGACACAGATGGTATTGGCTATTGGATACTTCTCCTTCATTATCTAGGTCTAGTTTGATAACCATTTGGTTTTTGTTTTTAGATTTTTTTAGCGTTGTGTTTGTTTTCTCCCTATTTTTTGTAACAATTTTCATGGAAGGATTTGAATTCTTAGCCAAATTCCATAAACGAAAACATTTTTCAAAACTACTGTTTTTTTTTAAGCAAAATTCTATCGTTCTGTTTCAAAATTCAAACGTCGATTTTGAAGCAGTCTCTTACTTTATAATTAGGACCCACCTCTTCTACCTTTTAAGGTTTTAGATTTTTCTTCTTCTTATCTATATCCTCTTTGCAAGCCAGTAAGGTCCCATCTTCATGTCTAAACGTATTTCCTAGGTATTTATGGTCCCAGTGGGCTGATCTCAAGTCTTCTGGAATCCATTTCAGGTCCTCCATGCCAGTGGAAGTGCATTTGTGAGACTATTAGATGTTCTGTTTTGCCAGTTTTGAAATTTGATTCACACCTGGATCTAGTACAAGTTAGATCTTTCTTGGATGGTTATGAAACCTTTGCTCTAGGTTTTCGTGCTCTTATTCTCTTGAAGTTTGATTTGCGTTCTAAATATTGAATTGCATATCATCCTTGTGGTGTATTTCTTACAAGCCACCTATAGGAATGGATGATAATCTAATTCAAACATATGGTTCTGAATTGTTCACCTGATGTTCCTCTTACTTAATATACAATAAGGAACTTTTTCATTGAAAAAACTCTATTGAGAAAAATGTATGAATACATGAGGGTAATACAAATCATAGGCTGGGGTCGAGAAGAAATTTCTAGTTATTTTTTGATGTCGGGATGTCATCTACATGTGCATTCCCGTTCTCCGAAGTGAAAATAAAAGGTGGAAAACAAAGAAGTTGAGCTATGTTGACTATGGAGGTTGTTCTGGTTTATTTATTTATATTGTCTATTAGCACCCGGATGCACATCGATCTATAATGTGTGAGATCCCACATCGGTTGGGGAGGAGAACGAAGCATCCTTTATAAGGGTGTGGAAATCTCTCCCCTAGCAGATGCGTTTTAAAAACCTTGAGGGGAAGCCCGAAAGGGAAAGTGTAAAGAAGGCAATATCTGCTAGTGATGGGTTTGGGCCATTACATAATGTGACGATGGATTAAGCTGATCATATATCTTATCTTTATAAAAGAGCATACTAATCCCAGAATCAAATGAAATAAGATTATTTATTCAACAATCTAGTTTAAATAAGTGAGAGATAATTGTTTTCACTTGAATGACTTGTCAAAATTAATCATCTACTAAAATATCTGAGAGCTTTTTGATGAGATTAGCAGTAAGTACTAATAAGGGTAAAGCTTCCCCTTGTTGTGAACTCTTGTCTAGTAGTCGACTGAATTCATATAGCAGGCCAAAGCAATGCAACATGTGATGACACACGTTGTGCCTAATGGTACTGCAAGGCCCCAAATTACCCAAACATATGGTAGGAGGGGGGAAAAAGGGAAAGGAGGGTAATCTGACATGAGTAAGGGGGGTGTGAGCTCGTTGTTGTTGTATGGTAAGTCGGCGAGGGGAGTGTCGTTATTTTGGGATTTGAGTACATGTAAGCTCTTTTACGAGTTGTGTGGCTAAGGCTTTGGGTAGGAGATGCTCCCAGCTCTCTCGAAGTAGCTGGAGAAGTTTGTTTCCTGTTTGTGCATTTTCCTATTGTTTAGTTGCTTGTTGTAATCATTCGTTTCCGAGCCATTATCAATAGAACAGTGTCTCCCCCTGTTCCATCTCTGGTTTCTGGTGCATTTTGTGTTACTTAGCGTTATTGCAGGTTGTTGTTAGGGAGAGATTCCTTATAGGTACATGGTAATCTGTATATTTAGGCCAAGTTTGGAAGTAATTTAATGGTTTTTTTACCAAAAAAATGTGTGTTTTTGGCGCAAATGGTTAATCCAGAAGCACTTAAAAGTGATTTTAAGAGTGTATAACTAAACATCAAACTGATTTGTTATCGAGTACTCGGTTGTTTAGACACATACCTACACAAAATTTTTCGACGATGTTGTTTACCAAGCTTTATCTTGGCGTAAACTGTCTAATATTTTTATTTCCTATAGTTATACCTTCCTCGTTGCAAATTGGGAAAGTCTTTTGTGAACACATGGACCGTCCCTTTTGTAAATTTCAATCATCAATTATTGTCTCTTATTAAAAAAGAAAAAAAAAATCGAGTACACGACTAGTAAAGTGATTATAATTACAATACTTGACCCCCAAATGGGTATTGTATGTTGTTCACAGGAAATAATAACACCTCTAAATGGAGTTAGCAGACAAGACGGTTGGATTTTTGCTATCGCTTACCAGCTTGTCCATCTTCACTTACTATACTTTCTGGGTCATTATCCTGGTAAGTTCATCTTCCATGTTCATAGATGCTCTACCAAATGATTTCATTCGGTGTACTTGATCGTGTTACTGTCGGTTAAAGTATTGATATAACTAAATTTGTCTTAACTCGTCTACTCCAACTTTTAGATTGATGGGTGATTTAACCTGGTACTAGAGGGTTTCGTGTTTGAACTCATGTAATGTCATTCTTTTATTAATTAATATTAATTTCTACTCGTTGGATCGAGATTGTTAAAGTATTTGATATAATTAAATTTATGATAGCTCGTGAACTTAGGTGATTTTAATGTATTTTGCTTTGTTTAATGGCAGCCGTTTGTGGATAGTGATCACTTCATCCACAGCTATTTCTTACCACAGGAATTTGCCATCCTCATACCTGTATTTGCTGGTGTGATACTTCTTTGCTTATTAGGCATATTTGTTGGAATTGTGATGCTCAAATCCAAAAGGAAGAAGGCATGA

mRNA sequence

ATGGACAAGACGGTTGGATTTTTGCTATCGCTTACCAGCTTGTCCATCTTCACTTACTATACTTTCTGGGTCATTATCCTGGAATTTGCCATCCTCATACCTGTATTTGCTGGTGTGATACTTCTTTGCTTATTAGGCATATTTGTTGGAATTGTGATGCTCAAATCCAAAAGGAAGAAGGCATGA

Coding sequence (CDS)

ATGGACAAGACGGTTGGATTTTTGCTATCGCTTACCAGCTTGTCCATCTTCACTTACTATACTTTCTGGGTCATTATCCTGGAATTTGCCATCCTCATACCTGTATTTGCTGGTGTGATACTTCTTTGCTTATTAGGCATATTTGTTGGAATTGTGATGCTCAAATCCAAAAGGAAGAAGGCATGA

Protein sequence

MDKTVGFLLSLTSLSIFTYYTFWVIILEFAILIPVFAGVILLCLLGIFVGIVMLKSKRKKA
BLAST of Cp4.1LG14g09860 vs. TrEMBL
Match: A0A0A0L3V9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G008860 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.6e-16
Identity = 55/76 (72.37%), Postives = 59/76 (77.63%), Query Frame = 1

Query: 2  DKTVGFLLSLTSLSIFTYYTFWVIIL----------------EFAILIPVFAGVILLCLL 61
          DKTVGFLLSLTSLSIFTYYTFWV+IL                E+AILIPVFAGV+LLCLL
Sbjct: 5  DKTVGFLLSLTSLSIFTYYTFWVVILPFVDSDHFIHNYFLPQEYAILIPVFAGVVLLCLL 64

BLAST of Cp4.1LG14g09860 vs. TrEMBL
Match: W9RBD6_9ROSA (Dolichol phosphate-mannose biosynthesis regulatory protein OS=Morus notabilis GN=L484_017751 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 5.4e-14
Identity = 51/76 (67.11%), Postives = 57/76 (75.00%), Query Frame = 1

Query: 2  DKTVGFLLSLTSLSIFTYYTFWVIIL----------------EFAILIPVFAGVILLCLL 61
          D+ VGFLLSL SLSIFTYYTFWVIIL                E+AILIPVFAGV+LLCLL
Sbjct: 5  DRAVGFLLSLISLSIFTYYTFWVIILPFVDSDHFIQQYFLPQEYAILIPVFAGVVLLCLL 64

BLAST of Cp4.1LG14g09860 vs. TrEMBL
Match: B9MU62_POPTR (Dolichol phosphate-mannose biosynthesis regulatory family protein OS=Populus trichocarpa GN=POPTR_0001s02060g PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.7e-13
Identity = 48/76 (63.16%), Postives = 56/76 (73.68%), Query Frame = 1

Query: 2  DKTVGFLLSLTSLSIFTYYTFWVIIL----------------EFAILIPVFAGVILLCLL 61
          D+ VGFLLSLTS+SIFTYYTFWVIIL                E+AIL+PVFAG++LLC L
Sbjct: 5  DRAVGFLLSLTSISIFTYYTFWVIILPFVDSDHFVHQYFLPQEYAILVPVFAGMVLLCFL 64

BLAST of Cp4.1LG14g09860 vs. TrEMBL
Match: A0A0D2R726_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G182800 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 6.0e-13
Identity = 49/76 (64.47%), Postives = 56/76 (73.68%), Query Frame = 1

Query: 2  DKTVGFLLSLTSLSIFTYYTFWVIIL----------------EFAILIPVFAGVILLCLL 61
          D+ VGFLLS+TSLSIFTYYTFWVIIL                E+AILIPV AGV+LLCLL
Sbjct: 5  DRAVGFLLSITSLSIFTYYTFWVIILPFVDSDNFIHNYFLPQEYAILIPVCAGVVLLCLL 64

BLAST of Cp4.1LG14g09860 vs. TrEMBL
Match: A0A0B0NSY7_GOSAR (Dolichol phosphate-mannose biosynthesis regulatory OS=Gossypium arboreum GN=F383_20657 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.0e-12
Identity = 49/76 (64.47%), Postives = 56/76 (73.68%), Query Frame = 1

Query: 2  DKTVGFLLSLTSLSIFTYYTFWVIIL----------------EFAILIPVFAGVILLCLL 61
          D+ VGFLLS+TSLSIFTYYTFWVIIL                E+AILIPV AGV LLCLL
Sbjct: 5  DRAVGFLLSITSLSIFTYYTFWVIILPFVDSDNFIHNYFLPQEYAILIPVCAGVALLCLL 64

BLAST of Cp4.1LG14g09860 vs. TAIR10
Match: AT1G74340.1 (AT1G74340.1 dolichol phosphate-mannose biosynthesis regulatory protein-related)

HSP 1 Score: 72.0 bits (175), Expect = 1.4e-13
Identity = 44/76 (57.89%), Postives = 52/76 (68.42%), Query Frame = 1

Query: 2  DKTVGFLLSLTSLSIFTYYTFWVIILEF----------------AILIPVFAGVILLCLL 61
          D+ VG LLS  SLSIFTYYTFWVIIL F                AIL+PVFAG+ LL L+
Sbjct: 5  DRAVGLLLSSISLSIFTYYTFWVIILPFVDSDHFIHKYFLPQDYAILVPVFAGIALLSLI 64

BLAST of Cp4.1LG14g09860 vs. NCBI nr
Match: gi|449462047|ref|XP_004148753.1| (PREDICTED: dolichol phosphate-mannose biosynthesis regulatory protein [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 3.8e-16
Identity = 55/76 (72.37%), Postives = 59/76 (77.63%), Query Frame = 1

Query: 2  DKTVGFLLSLTSLSIFTYYTFWVIIL----------------EFAILIPVFAGVILLCLL 61
          DKTVGFLLSLTSLSIFTYYTFWV+IL                E+AILIPVFAGV+LLCLL
Sbjct: 5  DKTVGFLLSLTSLSIFTYYTFWVVILPFVDSDHFIHNYFLPQEYAILIPVFAGVVLLCLL 64

BLAST of Cp4.1LG14g09860 vs. NCBI nr
Match: gi|659095576|ref|XP_008448655.1| (PREDICTED: dolichol phosphate-mannose biosynthesis regulatory protein [Cucumis melo])

HSP 1 Score: 92.0 bits (227), Expect = 3.8e-16
Identity = 55/76 (72.37%), Postives = 59/76 (77.63%), Query Frame = 1

Query: 2   DKTVGFLLSLTSLSIFTYYTFWVIIL----------------EFAILIPVFAGVILLCLL 61
           DKTVGFLLSLTSLSIFTYYTFWV+IL                E+AILIPVFAGV+LLCLL
Sbjct: 54  DKTVGFLLSLTSLSIFTYYTFWVVILPFVDSDHFVHNYFLPQEYAILIPVFAGVVLLCLL 113

BLAST of Cp4.1LG14g09860 vs. NCBI nr
Match: gi|703100504|ref|XP_010096937.1| (Dolichol phosphate-mannose biosynthesis regulatory protein [Morus notabilis])

HSP 1 Score: 84.3 bits (207), Expect = 7.8e-14
Identity = 51/76 (67.11%), Postives = 57/76 (75.00%), Query Frame = 1

Query: 2  DKTVGFLLSLTSLSIFTYYTFWVIIL----------------EFAILIPVFAGVILLCLL 61
          D+ VGFLLSL SLSIFTYYTFWVIIL                E+AILIPVFAGV+LLCLL
Sbjct: 5  DRAVGFLLSLISLSIFTYYTFWVIILPFVDSDHFIQQYFLPQEYAILIPVFAGVVLLCLL 64

BLAST of Cp4.1LG14g09860 vs. NCBI nr
Match: gi|566146711|ref|XP_006368363.1| (dolichol phosphate-mannose biosynthesis regulatory family protein [Populus trichocarpa])

HSP 1 Score: 82.0 bits (201), Expect = 3.9e-13
Identity = 48/76 (63.16%), Postives = 56/76 (73.68%), Query Frame = 1

Query: 2  DKTVGFLLSLTSLSIFTYYTFWVIIL----------------EFAILIPVFAGVILLCLL 61
          D+ VGFLLSLTS+SIFTYYTFWVIIL                E+AIL+PVFAG++LLC L
Sbjct: 5  DRAVGFLLSLTSISIFTYYTFWVIILPFVDSDHFVHQYFLPQEYAILVPVFAGMVLLCFL 64

BLAST of Cp4.1LG14g09860 vs. NCBI nr
Match: gi|823151668|ref|XP_012475661.1| (PREDICTED: dolichol phosphate-mannose biosynthesis regulatory protein [Gossypium raimondii])

HSP 1 Score: 80.9 bits (198), Expect = 8.6e-13
Identity = 49/76 (64.47%), Postives = 56/76 (73.68%), Query Frame = 1

Query: 2  DKTVGFLLSLTSLSIFTYYTFWVIIL----------------EFAILIPVFAGVILLCLL 61
          D+ VGFLLS+TSLSIFTYYTFWVIIL                E+AILIPV AGV+LLCLL
Sbjct: 5  DRAVGFLLSITSLSIFTYYTFWVIILPFVDSDNFIHNYFLPQEYAILIPVCAGVVLLCLL 64

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L3V9_CUCSA2.6e-1672.37Uncharacterized protein OS=Cucumis sativus GN=Csa_3G008860 PE=4 SV=1[more]
W9RBD6_9ROSA5.4e-1467.11Dolichol phosphate-mannose biosynthesis regulatory protein OS=Morus notabilis GN... [more]
B9MU62_POPTR2.7e-1363.16Dolichol phosphate-mannose biosynthesis regulatory family protein OS=Populus tri... [more]
A0A0D2R726_GOSRA6.0e-1364.47Uncharacterized protein OS=Gossypium raimondii GN=B456_004G182800 PE=4 SV=1[more]
A0A0B0NSY7_GOSAR1.0e-1264.47Dolichol phosphate-mannose biosynthesis regulatory OS=Gossypium arboreum GN=F383... [more]
Match NameE-valueIdentityDescription
AT1G74340.11.4e-1357.89 dolichol phosphate-mannose biosynthesis regulatory protein-related[more]
Match NameE-valueIdentityDescription
gi|449462047|ref|XP_004148753.1|3.8e-1672.37PREDICTED: dolichol phosphate-mannose biosynthesis regulatory protein [Cucumis s... [more]
gi|659095576|ref|XP_008448655.1|3.8e-1672.37PREDICTED: dolichol phosphate-mannose biosynthesis regulatory protein [Cucumis m... [more]
gi|703100504|ref|XP_010096937.1|7.8e-1467.11Dolichol phosphate-mannose biosynthesis regulatory protein [Morus notabilis][more]
gi|566146711|ref|XP_006368363.1|3.9e-1363.16dolichol phosphate-mannose biosynthesis regulatory family protein [Populus trich... [more]
gi|823151668|ref|XP_012475661.1|8.6e-1364.47PREDICTED: dolichol phosphate-mannose biosynthesis regulatory protein [Gossypium... [more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0030234enzyme regulator activity
Vocabulary: Cellular Component
TermDefinition
GO:0030176integral component of endoplasmic reticulum membrane
Vocabulary: Biological Process
TermDefinition
GO:0019348dolichol metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR009914DPM2
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019348 dolichol metabolic process
biological_process GO:0009059 macromolecule biosynthetic process
biological_process GO:0006506 GPI anchor biosynthetic process
biological_process GO:0035269 protein O-linked mannosylation
biological_process GO:0050790 regulation of catalytic activity
cellular_component GO:0030176 integral component of endoplasmic reticulum membrane
cellular_component GO:0033185 dolichol-phosphate-mannose synthase complex
molecular_function GO:0030234 enzyme regulator activity
molecular_function GO:0004582 dolichyl-phosphate beta-D-mannosyltransferase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g09860.1Cp4.1LG14g09860.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009914Dolichol phosphate-mannose biosynthesis regulatoryPFAMPF07297DPM2coord: 1..29
score: 4.7E-8coord: 28..60
score: 2.
NoneNo IPR availablePANTHERPTHR15039FAMILY NOT NAMEDcoord: 1..61
score: 1.6

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG14g09860Cp4.1LG08g08670Cucurbita pepo (Zucchini)cpecpeB249