Cp4.1LG14g08340 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG14g08340
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionC-repeat/DRE binding factor 1
LocationCp4.1LG14 : 6704885 .. 6706499 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATGTAAATGGATTGGTTTAAGGTTAATTATAAATAAGGTTTGGGTTGTGTTTAAAAGCTTGGATCCATTAAATATGGTACCATACGTCCTCTACCTCTCTTTATCCTACACAAATAGGACATGCCACCTTGTCTAATTGTTGTGTTTTTTTGTTTTTGGTACTAGATTTTGTGATTGGTTGGGCCCACGAGAATGGGAGGTAAAAGAAAATGAAGAGGTATTGTTTTTAAGAAATGGAAAGCATGTGTGTTTGGTTGGCATGCATGTTATTATAGAGGTGAGGTTTGTGTGATATTAGTAAGCTCACTTATCACTCTCATTGGAATTAATTGGGTGATTGCGTTGGGTGAAGCGTGTGATGTTATGCGGACAAACCCTAAATCCAACTCCTTCATTCCAATCTCCTTGTTTCTTTCCCCCACGAACTCCCCACGCTTTCACTTTTCCTCTTTCGATCATATTCATTTAAATTCTCTCTTTCTCTCTTTATTCTCAACTTCACCTCTCTCTCTCTCTCTCTCTCTCTCTCTTAGTCTCTCTCTCTCTCTCATAAATCTCTCTCTTAGTCTCTCTAGCTCTCTCTCTTAGTCTCTCTCTACCTCTCTCTCTAGCTCTCTCTCTTAGTCTCTCTCTAGCTCTCTCTCTCTAGCTCTCTCTCTCTAGCTCTCTCCCTTAGTCTCTCTCTACCTCTCTCTCTAGCTCTCTCTCTCTAGCTTTCTCTCTCTTAGTCTCTCTCTAGCTTTCTCTCTCTTAGTCTCTCTATCCCTCTCTCTTAGTCTCTCTCTAGCCCTCTCTCTTAGTCTCTCTCTAGCCCTCTCTCTCTTAGTCTCTCTATCCCCCCCTCTCTCTTAGTCTCTCTCTAGCTCTCTCTCTCTCTCTCTCTTAGTCTCTCTCTAGCTCTCTCTCTCTCTCTATCTATAAGTCTATAGGAGGCTGACCCAAATATGCCTATACAAAGTGTAGGCCAATAGACCCAACCCCTTTACTCATCAGTATCTACTACTGCCCACTTAACTCCTACAATCATATCCACCTATCTGGTGCCGGTGCTTTCCTTAATTTTGACCAAATATCATACCTTTTCTCTATTTGACATCTTTCATGGCCTCTACCTCCTCCAATAGACATGGCAACTACAAGGGAGTCCGCTGCCGGAGTGGCAAATGGGTGTCGGAGATTCGTGAGCCACGTAAGACTACTCGAATATGGCTCGGCACGTATCCAACGTCGGAGATGGCCGCTGCTGCCTACGACGTGGCTGCTCTGGCTCTCAAGGGTAGCAATGCTGTTCTCAACTTCCCGGACTCGATTCGCTCCTACCCAATTCCAGCTTCCAAATCCCCAGCTGATATTCGTCTCGCTGCCGCCGCTGCTGCCGCGACGAAAAAGGTTGATCAAGGAGAAAGTAATAACCCTATCTGCCACCAGTCTACTCCGTCCCATGAGTTCGTTGACGAAGAGGCACTGTTCGGAATGCCCAATTTGCTGCACGACATGGCGGAGGGAATGCTGTTGCCGCCGCCGCCACGAATGAGTGACTCGCCGTCATCACACGACTGCTACTCATGGAACTCCACCGGAGATGAAAATCTTTGGAGCTACCATTAG

mRNA sequence

ATGGAAGATTCTACTCCGTCCCATGAGTTCGTTGACGAAGAGGCACTGTTCGGAATGCCCAATTTGCTGCACGACATGGCGGAGGGAATGCTGTTGCCGCCGCCGCCACGAATGAGTGACTCGCCGTCATCACACGACTGCTACTCATGGAACTCCACCGGAGATGAAAATCTTTGGAGCTACCATTAG

Coding sequence (CDS)

ATGGAAGATTCTACTCCGTCCCATGAGTTCGTTGACGAAGAGGCACTGTTCGGAATGCCCAATTTGCTGCACGACATGGCGGAGGGAATGCTGTTGCCGCCGCCGCCACGAATGAGTGACTCGCCGTCATCACACGACTGCTACTCATGGAACTCCACCGGAGATGAAAATCTTTGGAGCTACCATTAG

Protein sequence

MEDSTPSHEFVDEEALFGMPNLLHDMAEGMLLPPPPRMSDSPSSHDCYSWNSTGDENLWSYH
BLAST of Cp4.1LG14g08340 vs. Swiss-Prot
Match: ERF25_ARATH (Ethylene-responsive transcription factor ERF025 OS=Arabidopsis thaliana GN=ERF025 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.2e-07
Identity = 31/55 (56.36%), Postives = 36/55 (65.45%), Query Frame = 1

Query: 7   SHEFVDEEALFGMPNLLHDMAEGMLLPPPPRMSDSPSSHDCYSWNSTGDENLWSY 62
           S EF+DEEA+  MP LL +MAEGML+  PPRM   P+  D    N  GD NLWSY
Sbjct: 179 SLEFMDEEAMLNMPTLLTEMAEGMLM-SPPRMMIHPTMEDDSPENHEGD-NLWSY 231

BLAST of Cp4.1LG14g08340 vs. Swiss-Prot
Match: DRE1B_ARATH (Dehydration-responsive element-binding protein 1B OS=Arabidopsis thaliana GN=DREB1B PE=2 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 9.4e-07
Identity = 27/52 (51.92%), Postives = 33/52 (63.46%), Query Frame = 1

Query: 10  FVDEEALFGMPNLLHDMAEGMLLPPPPRMSDSPSSHDCYSWNSTGDENLWSY 62
           ++DEE +FGMP LL +MAEGMLLPPP     S   +  Y     GD +LWSY
Sbjct: 167 YMDEETMFGMPTLLDNMAEGMLLPPP-----SVQWNHNYDGEGDGDVSLWSY 213

BLAST of Cp4.1LG14g08340 vs. Swiss-Prot
Match: ERF27_ARATH (Ethylene-responsive transcription factor ERF027 OS=Arabidopsis thaliana GN=ERF027 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 2.7e-06
Identity = 26/53 (49.06%), Postives = 34/53 (64.15%), Query Frame = 1

Query: 9   EFVDEEALFGMPNLLHDMAEGMLLPPPPRMSDSPSSHDCYSWNSTGDENLWSY 62
           EF+DEE +  MPNLL +MAEGM++ PP  M   PS     S  ++ DE+LW Y
Sbjct: 143 EFMDEEEVLNMPNLLANMAEGMMVAPPSWMGSRPSDD---SPENSNDEDLWGY 192

BLAST of Cp4.1LG14g08340 vs. TrEMBL
Match: A0A0A0L5V9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G042390 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.0e-19
Identity = 48/59 (81.36%), Postives = 52/59 (88.14%), Query Frame = 1

Query: 4   STPSHEFVDEEALFGMPNLLHDMAEGMLLPPPPRMSDSPSSHDCYSWNSTGDENLWSYH 63
           S P++EFVDEEALFGMPNLLHDMAEGMLL  PPRM+ SPS HD YSWNS+GD NLWSYH
Sbjct: 113 SPPTNEFVDEEALFGMPNLLHDMAEGMLL-SPPRMNSSPSRHDYYSWNSSGDGNLWSYH 170

BLAST of Cp4.1LG14g08340 vs. TrEMBL
Match: W6FIY4_9ROSA (Dehydration responsive element binding transcription factor OS=Morus notabilis GN=DREB4G PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.5e-08
Identity = 33/54 (61.11%), Postives = 39/54 (72.22%), Query Frame = 1

Query: 9   EFVDEEALFGMPNLLHDMAEGMLLPPPPRMSDSPSSHDCYS-WNSTGDENLWSY 62
           E+VDEEALFGMPNLL +MAEGMLL PP  M   P S + YS  +S G ++LW Y
Sbjct: 207 EYVDEEALFGMPNLLVEMAEGMLLSPPRMMESPPPSDEYYSPGSSDGGDSLWGY 260

BLAST of Cp4.1LG14g08340 vs. TrEMBL
Match: D8VD28_ACTDE (Ethylene response factor 1 OS=Actinidia deliciosa GN=ERF1 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.9e-08
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 1

Query: 3   DSTPSHEFVDEEALFGMPNLLHDMAEGMLLPPPPRMSDSPSSHDCYSWNSTGDENLWSY 62
           ++T   EF+DEEA+F MPN+L DMAEG+LL  PPRM   P   D  S  S+G +NLWSY
Sbjct: 193 ETTSGEEFIDEEAIFDMPNMLVDMAEGILL-SPPRMKSPPCDDD--SAESSGGDNLWSY 248

BLAST of Cp4.1LG14g08340 vs. TrEMBL
Match: M5WEE9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026499mg PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.0e-07
Identity = 36/55 (65.45%), Postives = 42/55 (76.36%), Query Frame = 1

Query: 9   EFVDEEALFGMPNLLHDMAEGMLLPPPPRMSDS-PSSHDCYSWNSTGDEN-LWSY 62
           +F+DEE LFGMPNLL DMAEGML+  PPRM+DS PS +D    NS G E+ LWSY
Sbjct: 131 DFMDEEELFGMPNLLMDMAEGMLV-SPPRMNDSPPSDYDDSPGNSDGGESLLWSY 184

BLAST of Cp4.1LG14g08340 vs. TrEMBL
Match: A0A0A0KKC4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G155560 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-07
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 1

Query: 1   MEDSTPS---HEFVDEEALFGMPNLLHDMAEGMLLPPPPRMSDSPSSHDCYSWNSTGDEN 60
           MED +      EFVDEE +FGMP LL DMAEGM++  PPRM+  P S D    NS G E+
Sbjct: 190 MEDCSKKMRIEEFVDEEEIFGMPGLLADMAEGMMV-SPPRMNSPPLSDDLME-NSDGTES 249

Query: 61  LWSY 62
           LWSY
Sbjct: 250 LWSY 251

BLAST of Cp4.1LG14g08340 vs. TAIR10
Match: AT5G52020.1 (AT5G52020.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 54.7 bits (130), Expect = 2.4e-08
Identity = 31/55 (56.36%), Postives = 36/55 (65.45%), Query Frame = 1

Query: 7   SHEFVDEEALFGMPNLLHDMAEGMLLPPPPRMSDSPSSHDCYSWNSTGDENLWSY 62
           S EF+DEEA+  MP LL +MAEGML+  PPRM   P+  D    N  GD NLWSY
Sbjct: 179 SLEFMDEEAMLNMPTLLTEMAEGMLM-SPPRMMIHPTMEDDSPENHEGD-NLWSY 231

BLAST of Cp4.1LG14g08340 vs. TAIR10
Match: AT4G25490.1 (AT4G25490.1 C-repeat/DRE binding factor 1)

HSP 1 Score: 53.5 bits (127), Expect = 5.3e-08
Identity = 27/52 (51.92%), Postives = 33/52 (63.46%), Query Frame = 1

Query: 10  FVDEEALFGMPNLLHDMAEGMLLPPPPRMSDSPSSHDCYSWNSTGDENLWSY 62
           ++DEE +FGMP LL +MAEGMLLPPP     S   +  Y     GD +LWSY
Sbjct: 167 YMDEETMFGMPTLLDNMAEGMLLPPP-----SVQWNHNYDGEGDGDVSLWSY 213

BLAST of Cp4.1LG14g08340 vs. TAIR10
Match: AT1G12630.1 (AT1G12630.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 52.0 bits (123), Expect = 1.5e-07
Identity = 26/53 (49.06%), Postives = 34/53 (64.15%), Query Frame = 1

Query: 9   EFVDEEALFGMPNLLHDMAEGMLLPPPPRMSDSPSSHDCYSWNSTGDENLWSY 62
           EF+DEE +  MPNLL +MAEGM++ PP  M   PS     S  ++ DE+LW Y
Sbjct: 143 EFMDEEEVLNMPNLLANMAEGMMVAPPSWMGSRPSDD---SPENSNDEDLWGY 192

BLAST of Cp4.1LG14g08340 vs. TAIR10
Match: AT2G36450.1 (AT2G36450.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 48.5 bits (114), Expect = 1.7e-06
Identity = 26/60 (43.33%), Postives = 39/60 (65.00%), Query Frame = 1

Query: 3   DSTPSHEFVDEEALFGMPNLLHDMAEGMLLPPP-PRMSDSPSSHDCYSWNSTGDENLWSY 62
           D+T  + F+DE+ +F MPN+L +MAEGMLL PP P + D+    D +     GD+ LW++
Sbjct: 127 DNTNMNGFMDEDLVFDMPNVLMNMAEGMLLSPPRPTVFDAAYDADGF---PGGDDYLWNF 183

BLAST of Cp4.1LG14g08340 vs. TAIR10
Match: AT5G51990.1 (AT5G51990.1 C-repeat-binding factor 4)

HSP 1 Score: 48.1 bits (113), Expect = 2.2e-06
Identity = 24/52 (46.15%), Postives = 35/52 (67.31%), Query Frame = 1

Query: 10  FVDEEALFGMPNLLHDMAEGMLLPPPPRMSDSPSSHDCYSWNSTGDENLWSY 62
           ++D+EAL GMPN   +MAEGMLLPPP    +   +H+   ++  GD +LWS+
Sbjct: 177 YMDDEALLGMPNFFENMAEGMLLPPP----EVGWNHN--DFDGVGDVSLWSF 222

BLAST of Cp4.1LG14g08340 vs. NCBI nr
Match: gi|700200839|gb|KGN55972.1| (hypothetical protein Csa_3G042390 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 2.8e-19
Identity = 48/59 (81.36%), Postives = 52/59 (88.14%), Query Frame = 1

Query: 4   STPSHEFVDEEALFGMPNLLHDMAEGMLLPPPPRMSDSPSSHDCYSWNSTGDENLWSYH 63
           S P++EFVDEEALFGMPNLLHDMAEGMLL  PPRM+ SPS HD YSWNS+GD NLWSYH
Sbjct: 113 SPPTNEFVDEEALFGMPNLLHDMAEGMLL-SPPRMNSSPSRHDYYSWNSSGDGNLWSYH 170

BLAST of Cp4.1LG14g08340 vs. NCBI nr
Match: gi|659096218|ref|XP_008448976.1| (PREDICTED: ethylene-responsive transcription factor ERF026-like [Cucumis melo])

HSP 1 Score: 98.2 bits (243), Expect = 5.3e-18
Identity = 47/59 (79.66%), Postives = 51/59 (86.44%), Query Frame = 1

Query: 4   STPSHEFVDEEALFGMPNLLHDMAEGMLLPPPPRMSDSPSSHDCYSWNSTGDENLWSYH 63
           S P++EFVDEEALFGMPNLL DMAEGMLL  PPRM+ SPS HD YSWNS+GD NLWSYH
Sbjct: 112 SPPANEFVDEEALFGMPNLLLDMAEGMLL-SPPRMNSSPSRHDYYSWNSSGDGNLWSYH 169

BLAST of Cp4.1LG14g08340 vs. NCBI nr
Match: gi|703061698|ref|XP_010086541.1| (Ethylene-responsive transcription factor [Morus notabilis])

HSP 1 Score: 65.1 bits (157), Expect = 5.0e-08
Identity = 33/54 (61.11%), Postives = 39/54 (72.22%), Query Frame = 1

Query: 9   EFVDEEALFGMPNLLHDMAEGMLLPPPPRMSDSPSSHDCYS-WNSTGDENLWSY 62
           E+VDEEALFGMPNLL +MAEGMLL PP  M   P S + YS  +S G ++LW Y
Sbjct: 207 EYVDEEALFGMPNLLVEMAEGMLLSPPRMMESPPPSDEYYSPGSSDGGDSLWGY 260

BLAST of Cp4.1LG14g08340 vs. NCBI nr
Match: gi|747068548|ref|XP_011081034.1| (PREDICTED: ethylene-responsive transcription factor ERF026-like [Sesamum indicum])

HSP 1 Score: 65.1 bits (157), Expect = 5.0e-08
Identity = 36/60 (60.00%), Postives = 42/60 (70.00%), Query Frame = 1

Query: 2   EDSTPSHEFVDEEALFGMPNLLHDMAEGMLLPPPPRMSDSPSSHDCYSWNSTGDENLWSY 61
           E  T  HEF+DEEALF MPNLL DMAEGML+  PPRM+  PS     S +++  ENLWSY
Sbjct: 196 ETLTSGHEFIDEEALFHMPNLLMDMAEGMLV-SPPRMASPPSDD---SPDNSDAENLWSY 251

BLAST of Cp4.1LG14g08340 vs. NCBI nr
Match: gi|300078998|gb|ADJ67430.1| (ethylene response factor 1 [Actinidia deliciosa])

HSP 1 Score: 64.3 bits (155), Expect = 8.5e-08
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 1

Query: 3   DSTPSHEFVDEEALFGMPNLLHDMAEGMLLPPPPRMSDSPSSHDCYSWNSTGDENLWSY 62
           ++T   EF+DEEA+F MPN+L DMAEG+LL  PPRM   P   D  S  S+G +NLWSY
Sbjct: 193 ETTSGEEFIDEEAIFDMPNMLVDMAEGILL-SPPRMKSPPCDDD--SAESSGGDNLWSY 248

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ERF25_ARATH4.2e-0756.36Ethylene-responsive transcription factor ERF025 OS=Arabidopsis thaliana GN=ERF02... [more]
DRE1B_ARATH9.4e-0751.92Dehydration-responsive element-binding protein 1B OS=Arabidopsis thaliana GN=DRE... [more]
ERF27_ARATH2.7e-0649.06Ethylene-responsive transcription factor ERF027 OS=Arabidopsis thaliana GN=ERF02... [more]
Match NameE-valueIdentityDescription
A0A0A0L5V9_CUCSA2.0e-1981.36Uncharacterized protein OS=Cucumis sativus GN=Csa_3G042390 PE=4 SV=1[more]
W6FIY4_9ROSA3.5e-0861.11Dehydration responsive element binding transcription factor OS=Morus notabilis G... [more]
D8VD28_ACTDE5.9e-0855.93Ethylene response factor 1 OS=Actinidia deliciosa GN=ERF1 PE=2 SV=1[more]
M5WEE9_PRUPE1.0e-0765.45Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026499mg PE=4 SV=1[more]
A0A0A0KKC4_CUCSA1.3e-0756.25Uncharacterized protein OS=Cucumis sativus GN=Csa_5G155560 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G52020.12.4e-0856.36 Integrase-type DNA-binding superfamily protein[more]
AT4G25490.15.3e-0851.92 C-repeat/DRE binding factor 1[more]
AT1G12630.11.5e-0749.06 Integrase-type DNA-binding superfamily protein[more]
AT2G36450.11.7e-0643.33 Integrase-type DNA-binding superfamily protein[more]
AT5G51990.12.2e-0646.15 C-repeat-binding factor 4[more]
Match NameE-valueIdentityDescription
gi|700200839|gb|KGN55972.1|2.8e-1981.36hypothetical protein Csa_3G042390 [Cucumis sativus][more]
gi|659096218|ref|XP_008448976.1|5.3e-1879.66PREDICTED: ethylene-responsive transcription factor ERF026-like [Cucumis melo][more]
gi|703061698|ref|XP_010086541.1|5.0e-0861.11Ethylene-responsive transcription factor [Morus notabilis][more]
gi|747068548|ref|XP_011081034.1|5.0e-0860.00PREDICTED: ethylene-responsive transcription factor ERF026-like [Sesamum indicum... [more]
gi|300078998|gb|ADJ67430.1|8.5e-0855.93ethylene response factor 1 [Actinidia deliciosa][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0019760 glucosinolate metabolic process
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0043565 sequence-specific DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g08340.1Cp4.1LG14g08340.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31985FAMILY NOT NAMEDcoord: 1..62
score: 2.2
NoneNo IPR availablePANTHERPTHR31985:SF9ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF025-RELATEDcoord: 1..62
score: 2.2

The following gene(s) are paralogous to this gene:

None