Cp4.1LG14g04550 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG14g04550
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionBasic helix-loop-helix transcription factor
LocationCp4.1LG14 : 1556221 .. 1557626 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACCTATAGGACCCATTTCAGAAAGGGAATGGATATCTCTCACTGGAGCTTACACAGCTGAGGAGTCTGATTTCATGGCTAATTTGCTCAACAACTATTGTCTTCCAAACGAGCTCAATCCCGGTTCGAGCTCGGCCGTCCCGTCTGCTTGTTTGGCCATGGCACCCATGGATGAACCTTCTTACTATAGTAATCCTTATTACACCTTGAATGAGAATGATTCTCACCCTCTTTGGTTGCCTAATAATGGTGCCTCTTTGTCCTTGGATTTCTCGATGGAGGATGTTCGGAATGGCGACCGATTGGACGATTGCGGTTCGAGTCGAAAAACAAGGCAATGCAGGCTGCAACAATTCCCTGCTGGAAGCTCACAGCCCGAAAAGAGAGCTGAGATCACGGTGGAAGTAGCTACGAAGGACGATAAAGTTGCACCGACACCAGTTGACACCAACTCGAGGAAACGATCCCCGAGTTCGTATAATGTAAGATTGATAATTCAAGCTCATATGTTTCTTTGATTCTAATGATATTGTCCACTTTGAGCATAAGCTCTCGTGGGTTTGCTTTGGACTTCCTCAAAAGGCAGATGTATTCCTTAAATTAGTCAACGTGGGACTCCCTCGCAACGATCCTCAACACTAATGGCATTGCGCTTTGTGATTTGATAATGAAGGTGGAAAAGACGAAGACGAGTACGAGGAACACGAGGGCACGGAAGAGCTCGAAGATTGGTTCGGCTAGCTGCAATGAAGAGGAGGATCACATTGTTAGTCCAAATGGGCTGTGCACAAGCAGCTTCAGCTCAGAAGATGACTGTAATGGTGGGATCACTTCCAGCTCAACCCTGAGCTCAAGTGGAAAGCCAAGAGCCAGTAGAGGCTCAGCCACAGACCCTCAAAGCCTCTATGCAAGGGTAACCCTCTAACCATTGTTGAACTCCCGAACTCCCGTTGCCATACTTGAACTCTCGAACTCGGATCTAATATGCAACTCCTTTAAATTTTCCTTCAGAAAAGGAGAGAAAGAATCAATGAAAGGTTGAGAATGTTACAAAGCCTCGTCCCCAACGGCACGAAGGTAGGCCAATCTCACACGAACATATACGATCTCGGTGTTTATCACACGATCATCAATATCTCGGTTTGTGCAGGTTGATATCAGTACAATGCTTGAAGAAGCAGTTGAGTATGTGAAGTTCTTGCAGCTTCAAATCAAGGTAATTTTTGAATGAACAAACCATTATTAATTCCATAATTTTCAAGGCTTGATTTTGTGTTGAATCCAATGTTTGCAGCTGTTGAGCTCTGATGATCTATGGATGTATGCACCAATTGCTTACAATGGAATGGACATTGGACTTAACTTGAAGCTCATGAAACAAGACAATAATGCATCACAATAG

mRNA sequence

ATGGAACCTATAGGACCCATTTCAGAAAGGGAATGGATATCTCTCACTGGAGCTTACACAGCTGAGGAGTCTGATTTCATGGCTAATTTGCTCAACAACTATTGTCTTCCAAACGAGCTCAATCCCGGTTCGAGCTCGGCCGTCCCGTCTGCTTGTTTGGCCATGGCACCCATGGATGAACCTTCTTACTATAGTAATCCTTATTACACCTTGAATGAGAATGATTCTCACCCTCTTTGGTTGCCTAATAATGGTGCCTCTTTGTCCTTGGATTTCTCGATGGAGGATGTTCGGAATGGCGACCGATTGGACGATTGCGGTTCGAGTCGAAAAACAAGGCAATGCAGGCTGCAACAATTCCCTGCTGGAAGCTCACAGCCCGAAAAGAGAGCTGAGATCACGGTGGAAGTAGCTACGAAGGACGATAAAGTTGCACCGACACCAAGCTCGAAGATTGGTTCGGCTAGCTGCAATGAAGAGGAGGATCACATTGTTAGTCCAAATGGGCTGTGCACAAGCAGCTTCAGCTCAGAAGATGACTGTAATGGTGGGATCACTTCCAGCTCAACCCTGAGCTCAAGTGGAAAGCCAAGAGCCAGTAGAGGCTCAGCCACAGACCCTCAAAGCCTCTATGCAAGGAAAAGGAGAGAAAGAATCAATGAAAGGTTGAGAATGTTACAAAGCCTCGTCCCCAACGGCACGAAGGTTGATATCAGTACAATGCTTGAAGAAGCAGTTGAGTATGTGAAGTTCTTGCAGCTTCAAATCAAGCTGTTGAGCTCTGATGATCTATGGATGTATGCACCAATTGCTTACAATGGAATGGACATTGGACTTAACTTGAAGCTCATGAAACAAGACAATAATGCATCACAATAG

Coding sequence (CDS)

ATGGAACCTATAGGACCCATTTCAGAAAGGGAATGGATATCTCTCACTGGAGCTTACACAGCTGAGGAGTCTGATTTCATGGCTAATTTGCTCAACAACTATTGTCTTCCAAACGAGCTCAATCCCGGTTCGAGCTCGGCCGTCCCGTCTGCTTGTTTGGCCATGGCACCCATGGATGAACCTTCTTACTATAGTAATCCTTATTACACCTTGAATGAGAATGATTCTCACCCTCTTTGGTTGCCTAATAATGGTGCCTCTTTGTCCTTGGATTTCTCGATGGAGGATGTTCGGAATGGCGACCGATTGGACGATTGCGGTTCGAGTCGAAAAACAAGGCAATGCAGGCTGCAACAATTCCCTGCTGGAAGCTCACAGCCCGAAAAGAGAGCTGAGATCACGGTGGAAGTAGCTACGAAGGACGATAAAGTTGCACCGACACCAAGCTCGAAGATTGGTTCGGCTAGCTGCAATGAAGAGGAGGATCACATTGTTAGTCCAAATGGGCTGTGCACAAGCAGCTTCAGCTCAGAAGATGACTGTAATGGTGGGATCACTTCCAGCTCAACCCTGAGCTCAAGTGGAAAGCCAAGAGCCAGTAGAGGCTCAGCCACAGACCCTCAAAGCCTCTATGCAAGGAAAAGGAGAGAAAGAATCAATGAAAGGTTGAGAATGTTACAAAGCCTCGTCCCCAACGGCACGAAGGTTGATATCAGTACAATGCTTGAAGAAGCAGTTGAGTATGTGAAGTTCTTGCAGCTTCAAATCAAGCTGTTGAGCTCTGATGATCTATGGATGTATGCACCAATTGCTTACAATGGAATGGACATTGGACTTAACTTGAAGCTCATGAAACAAGACAATAATGCATCACAATAG

Protein sequence

MEPIGPISEREWISLTGAYTAEESDFMANLLNNYCLPNELNPGSSSAVPSACLAMAPMDEPSYYSNPYYTLNENDSHPLWLPNNGASLSLDFSMEDVRNGDRLDDCGSSRKTRQCRLQQFPAGSSQPEKRAEITVEVATKDDKVAPTPSSKIGSASCNEEEDHIVSPNGLCTSSFSSEDDCNGGITSSSTLSSSGKPRASRGSATDPQSLYARKRRERINERLRMLQSLVPNGTKVDISTMLEEAVEYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKLMKQDNNASQ
Homology
[Close]
BLAST of Cp4.1LG14g04550 vs. Swiss-Prot
Match: BH084_ARATH (Transcription factor bHLH84 OS=Arabidopsis thaliana GN=BHLH84 PE=2 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 9.4e-41
Identity = 109/225 (48.44%), Postives = 141/225 (62.67%), Query Frame = 1 

Query: 67  PYYTLNENDSHPLWLPNNGASLSLDFSMEDVRNGDRLDDCGSSRKTRQCRLQQFPAGSSQ 126
           P  T+ EN  H +  P N  + + D  M         + C SS+K  +         +++
Sbjct: 115 PLETVAENHDHSMLQPENSLTTTTDEKM--------FNQCESSKKRTRATTTDKNKRANK 174

Query: 127 PEKRAEITVEVATKDDKVAPTPSSKIGSASCNEEEDHIVSPNGLCTSSFSSEDDCNGGIT 186
             +R++  VE++ +++    +   +    +  + +   + P   C S    +D+ NGG T
Sbjct: 175 A-RRSQKCVEMSGENEN---SGEEEYTEKAAGKRKTKPLKPQKTCCS----DDESNGGDT 234

Query: 187 --------SSSTLSSSGKPRASRGSATDPQSLYARKRRERINERLRMLQSLVPNGTKVDI 246
                    S  L+ +GK RASRG+ATDPQSLYARKRRERINERLR+LQ LVPNGTKVDI
Sbjct: 235 FLSKEDGEDSKALNLNGKTRASRGAATDPQSLYARKRRERINERLRILQHLVPNGTKVDI 294

Query: 247 STMLEEAVEYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKL 284
           STMLEEAV+YVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGL+LKL
Sbjct: 295 STMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLDLKL 323

[Close]
BLAST of Cp4.1LG14g04550 vs. Swiss-Prot
Match: BH085_ARATH (Transcription factor bHLH85 OS=Arabidopsis thaliana GN=BHLH85 PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 7.5e-38
Identity = 109/216 (50.46%), Postives = 131/216 (60.65%), Query Frame = 1 

Query: 67  PYYTLNENDSHPLWLPNNGASLSLDFSMEDVRNGDRLDDCGSSRKTR-QCRLQQFPAGSS 126
           P  T+ EN      L  +  S++   S+   +   R      +++ R   R Q+    S 
Sbjct: 140 PLETVVENHDDEESLLQSEISVTTTKSLTGSKKRSRATSTDKNKRARVNKRAQKNVEMSG 199

Query: 127 QPEKRAEITVEVATKDDKVAPTPSSKIGSAS-CNEEEDHIVSPNGLCTSSFSSEDDCNGG 186
              +  E   E   K  K     S +  S + C EEE +    +G    S S EDD    
Sbjct: 200 DNNEGEEEEGETKLKKRKNGAMMSRQNSSTTFCTEEESNCADQDGGGEDSSSKEDD---- 259

Query: 187 ITSSSTLSSSGKPRASRGSATDPQSLYARKRRERINERLRMLQSLVPNGTKVDISTMLEE 246
              S  L+ +GK RASRG+ATDPQSLYARKRRERINERLR+LQ+LVPNGTKVDISTMLEE
Sbjct: 260 --PSKALNLNGKTRASRGAATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEE 319

Query: 247 AVEYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLN 281
           AV YVKFLQLQIKLLSSDDLWMYAPIA+NGMDIGL+
Sbjct: 320 AVHYVKFLQLQIKLLSSDDLWMYAPIAFNGMDIGLS 349

[Close]
BLAST of Cp4.1LG14g04550 vs. Swiss-Prot
Match: BH139_ARATH (Transcription factor bHLH139 OS=Arabidopsis thaliana GN=BHLH139 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.9e-34
Identity = 85/151 (56.29%), Postives = 111/151 (73.51%), Query Frame = 1 

Query: 137 VATKDDKVAPTPSSKIGSASCNEEEDHIVSPNGLCTSSFSSEDDCNG-GITSSSTLSSSG 196
           V ++ D + P    K+ S S    E      +G   SS++S DD    G+ S+++ S   
Sbjct: 71  VDSRQDLLKPRKKQKLSSESNLVTEPKTAWRDGQSLSSYNSSDDEKALGLVSNTSKSLKR 130

Query: 197 KPRASRGSATDPQSLYARKRRERINERLRMLQSLVPNGTKVDISTMLEEAVEYVKFLQLQ 256
           K +A+RG A+DPQSLYARKRRERIN+RL+ LQSLVPNGTKVDISTMLE+AV YVKFLQLQ
Sbjct: 131 KAKANRGIASDPQSLYARKRRERINDRLKTLQSLVPNGTKVDISTMLEDAVHYVKFLQLQ 190

Query: 257 IKLLSSDDLWMYAPIAYNGMDIGLNLKLMKQ 287
           IKLLSS+DLWMYAP+A+NG+++GL+  L+ +
Sbjct: 191 IKLLSSEDLWMYAPLAHNGLNMGLHHNLLSR 221

[Close]
BLAST of Cp4.1LG14g04550 vs. Swiss-Prot
Match: BH054_ARATH (Transcription factor bHLH54 OS=Arabidopsis thaliana GN=BHLH54 PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.9e-33
Identity = 84/148 (56.76%), Postives = 107/148 (72.30%), Query Frame = 1 

Query: 139 TKDDKVAPTPSSKIGSASCNEEEDHIVSPNGLCTSSFSSEDDCNGGITSSSTLSSSGKPR 198
           T+ +        ++ S S   +E +    +G   S+ SS+D+       +S  S  GK R
Sbjct: 116 TRQELAKSKKKQRVSSESNTVDESNTNWVDGQSLSN-SSDDE------KASVTSVKGKTR 175

Query: 199 ASRGSATDPQSLYARKRRERINERLRMLQSLVPNGTKVDISTMLEEAVEYVKFLQLQIKL 258
           A++G+ATDPQSLYARKRRE+INERL+ LQ+LVPNGTKVDISTMLEEAV YVKFLQLQIKL
Sbjct: 176 ATKGTATDPQSLYARKRREKINERLKTLQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKL 235

Query: 259 LSSDDLWMYAPIAYNGMDIGLNLKLMKQ 287
           LSSDDLWMYAP+AYNG+D+G +  L+ +
Sbjct: 236 LSSDDLWMYAPLAYNGLDMGFHHNLLSR 256

[Close]
BLAST of Cp4.1LG14g04550 vs. Swiss-Prot
Match: BH083_ARATH (Transcription factor bHLH83 OS=Arabidopsis thaliana GN=BHLH83 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.6e-16
Identity = 46/78 (58.97%), Postives = 63/78 (80.77%), Query Frame = 1 

Query: 188 SSTLSSSGKPRASRGSATDPQSLYARKRRERINERLRMLQSLVPNGTKVDISTMLEEAVE 247
           SS ++   KP+ +  S  DPQSL A+ RRERI+ERL++LQ LVPNGTKVD+ TMLE+A+ 
Sbjct: 187 SSGVTGKTKPKPTT-SPKDPQSLAAKNRRERISERLKILQELVPNGTKVDLVTMLEKAIS 246

Query: 248 YVKFLQLQIKLLSSDDLW 266
           YVKFLQ+Q+K+L++D+ W
Sbjct: 247 YVKFLQVQVKVLATDEFW 263

[Close]
BLAST of Cp4.1LG14g04550 vs. TrEMBL
Match: A0A0A0KT10_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000890 PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 9.7e-101
Identity = 233/345 (67.54%), Postives = 255/345 (73.91%), Query Frame = 1 

Query: 5   GPISEREWISLTGAYTAEESDFMANLLNNYCLPNELNPGSSSAVPSACLAMAPMDEPSYY 64
           G ISEREWISL+GAYTAEESDFMANLL+NYC+PNELN   S  +PS+  A +  +EPSYY
Sbjct: 3   GAISEREWISLSGAYTAEESDFMANLLSNYCIPNELNSDLSLEIPSSYWASS--NEPSYY 62

Query: 65  SNP------YYTLNE---------NDSHP-LWLPNNGASLSLDFSMEDVRNGDRLDDCGS 124
           S+        Y L++         NDS+P LWLPNNGASLSLDFS+EDVRN D LDD GS
Sbjct: 63  SSDASDSSNIYALSQPNNNLPYTFNDSNPTLWLPNNGASLSLDFSIEDVRNADCLDDNGS 122

Query: 125 S-RKTRQC-RLQQFPAGS------SQPEKRA-EITVEVATKDDKVAPTP----------- 184
           + RKTRQC RLQQ PA S      SQP++RA ++ VE A +DDKV P             
Sbjct: 123 NIRKTRQCSRLQQSPADSVVNGKSSQPKRRANDVMVEEAMRDDKVGPVSVENFSRKRPQS 182

Query: 185 ---------------SSKIGSASCNEEEDHIVSPNGLCTSSFSSEDDCN------GGITS 244
                          +SKI S SCNEE D IVSPNG CTSSFSSEDDCN      GGITS
Sbjct: 183 LLDVEKTKRSGRARKTSKIASGSCNEE-DQIVSPNGQCTSSFSSEDDCNEAQENNGGITS 242

Query: 245 SSTLSSSGKPRASRGSATDPQSLYARKRRERINERLRMLQSLVPNGTKVDISTMLEEAVE 293
           SST  S+GKPRASRGSATDPQSLYARKRRERINERLR+LQSLVPNGTKVDISTMLEEAV+
Sbjct: 243 SST--SNGKPRASRGSATDPQSLYARKRRERINERLRILQSLVPNGTKVDISTMLEEAVQ 302

[Close]
BLAST of Cp4.1LG14g04550 vs. TrEMBL
Match: A0A0D2NHC2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G231900 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.0e-50
Identity = 140/295 (47.46%), Postives = 181/295 (61.36%), Query Frame = 1 

Query: 1   MEPIGPISEREWISLTGAYTAE-ESDFMANLLNNYCLPNELNPGSSSAVPSACLAMAPMD 60
           M+ +G + E +W   +G YT + E+DFMA LL+N                  C  +  +D
Sbjct: 1   MDSMGTLLEGDWSCFSGMYTTDQEADFMAQLLSN------------------CPQLPDID 60

Query: 61  EPSYYSNPYYTLNENDSHPLWLPNNGASLSLDFSMEDVRNGDRL----DDCGSSRKTRQC 120
             +Y S         DS+P+++ NN + +S+DF MED           DDC      +  
Sbjct: 61  MSNYLS---------DSNPVFVTNN-SPISMDFCMEDGTKTSFFLVEPDDCLDPEMGKNG 120

Query: 121 RLQQFPAGSSQPEKRAEITVEVATKDDKVAPTP----SSKIGSASCNEEEDHIVSPNGLC 180
            +++ P    +PEK++       + D  V  +     S K  + + N++ED     NG  
Sbjct: 121 NVEKEP--KPEPEKKSSNKRSRNSGDVHVQKSKRNGRSKKNQTIAANDDEDGNGGLNGQS 180

Query: 181 TSSFSSEDDCNGGITSSS----TLSSSGKPRASRGSATDPQSLYARKRRERINERLRMLQ 240
            +S SSEDD NGG +S S    TL+ +GK RASRG+ATDPQSLYARKRRERINERLR+LQ
Sbjct: 181 WASCSSEDDSNGGASSGSKGETTLNLNGKTRASRGAATDPQSLYARKRRERINERLRILQ 240

Query: 241 SLVPNGTKVDISTMLEEAVEYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLK 283
           +LVPNGTKVDISTMLEEAV+YVKFLQLQIKLLSSDDLWMYAPIAYNGMDIG++LK
Sbjct: 241 NLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGIDLK 265

[Close]
BLAST of Cp4.1LG14g04550 vs. TrEMBL
Match: B9HMZ0_POPTR (Basic helix-loop-helix family protein OS=Populus trichocarpa GN=POPTR_0009s09210g PE=4 SV=2)

HSP 1 Score: 207.2 bits (526), Expect = 2.7e-50
Identity = 156/358 (43.58%), Postives = 197/358 (55.03%), Query Frame = 1 

Query: 1   MEPIGPISEREWISLTGAYTAEESDFMANLLNNYCLPNELNPGSSSAVPSA-------CL 60
           ME IG ++E EW SL G YT+EE+DFMA LL N   PN+++  S+  VPS+         
Sbjct: 1   MESIGSMAEGEWSSLGGMYTSEEADFMAQLLGN--CPNQVDSSSNFGVPSSFWPNHEPTT 60

Query: 61  AMAPMDEPSYYSNPYYTLN----------------------------ENDSHPLWLPNNG 120
            M   +E  +YS  +  +N                             +DSHP+ L NN 
Sbjct: 61  DMEGANECLFYSLDFANINLHHFSQGSSSYSGGSGILFPNTSQDSYYMSDSHPI-LANNN 120

Query: 121 ASLSLDFSMEDVRNGDRLDDCGSSRKT--------------------RQCRLQQFPAG-- 180
           +S+S+DF M D    +  DDC +   +                    R  R  + PA   
Sbjct: 121 SSMSMDFCMGDSYLVEG-DDCSNQEMSNSNEEPGGNQTVAALPENDFRAKREPEMPASEL 180

Query: 181 -----SSQP----EKRAEITVEVATKDDKVAPTPSSKIGSASCNEEEDHIVSPNGLCTSS 240
                SS P    +KR+  + +        +   S K+ S S N+E  +    NG  +S 
Sbjct: 181 PLEDKSSNPPQISKKRSRNSGDAQKNKRNASSKKSQKVASTSNNDEGSN-AGLNGPASSG 240

Query: 241 FSSEDDCNG------GITSS------STLSSSGKPRASRGSATDPQSLYARKRRERINER 281
             SED+ N       G +SS      +TL+SSGK RASRG+ATDPQSLYARKRRERINER
Sbjct: 241 CCSEDESNASHELNRGASSSLSSKGTATLNSSGKTRASRGAATDPQSLYARKRRERINER 300

[Close]
BLAST of Cp4.1LG14g04550 vs. TrEMBL
Match: B9GI92_POPTR (Basic helix-loop-helix family protein OS=Populus trichocarpa GN=POPTR_0001s30150g PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 8.6e-49
Identity = 148/324 (45.68%), Postives = 190/324 (58.64%), Query Frame = 1 

Query: 1   MEPIGPISEREWISLTGAYTAEESDFMANLLNNYCLPNELNPGSSSAVPSACLAMAPMDE 60
           MEPIG  +E EW SL+G YT+EE+DFM  LL N C PN+++  SS  VPS          
Sbjct: 1   MEPIGATAEGEWSSLSGMYTSEEADFMEQLLVN-CPPNQVDSSSSFGVPS---------- 60

Query: 61  PSYYSNPYYTLNENDSHPLWLPNNGASLSLDFSMEDVRNG-------DRLDDCGSSRKTR 120
            S++ N   T+N   ++   L +   + +  +    V +G         +++ G ++   
Sbjct: 61  -SFWPNHESTMNMEGANECLLYSLDIADTNLYHFSQVSSGYSGELSNGNVEESGGNQTVA 120

Query: 121 QC----------RLQQFPAG-------SSQP----EKRAEITVEVATKDDKVAPTPSSKI 180
                       R  + PA        S +P    +KR+  T +       V    S K+
Sbjct: 121 ALPEPESNLQPKRESKMPASELPLEDKSRKPPENSKKRSRRTGDAQKNKRNVRSKKSQKV 180

Query: 181 GSASCNEEEDHIVSPNGLCTSSFSSEDDCN------GGITSS------STLSSSGKPRAS 240
            S   N+EE +    NG  +S   SED+ N      GG +SS      +TL+SSGK RAS
Sbjct: 181 ASTGNNDEESN-GGLNGPVSSGCCSEDESNASQELNGGASSSLSSKGTTTLNSSGKTRAS 240

Query: 241 RGSATDPQSLYARKRRERINERLRMLQSLVPNGTKVDISTMLEEAVEYVKFLQLQIKLLS 284
           +G+ATDPQSLYARKRRERINERLR+LQ+LVPNGTKVDISTMLEEAV+YVKFLQLQIKLLS
Sbjct: 241 KGAATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLS 300

[Close]
BLAST of Cp4.1LG14g04550 vs. TrEMBL
Match: A0A061E855_THECC (Basic helix-loop-helix DNA-binding superfamily protein, putative OS=Theobroma cacao GN=TCM_007220 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.1e-48
Identity = 151/349 (43.27%), Postives = 193/349 (55.30%), Query Frame = 1 

Query: 7   ISEREWISLTGAYTAEESDFMANLLNNYCLPNELNPGSSSAVPS--------------AC 66
           I E EW SL+G YT EE+DFMA LL+N  LPNEL+  S+  +PS              A 
Sbjct: 8   ILEGEWSSLSGTYTTEEADFMAQLLSNCPLPNELDGSSNLGIPSTYWPGHHSTISMKAAS 67

Query: 67  LAMAPMDEPSYYS--------------------NPYYTLNENDSHPLWLPNNGASLSLDF 126
              + + + S YS                      YY    +DSHP+++ NN + +S+DF
Sbjct: 68  YCSSDIADTSSYSFSQGSSYSAGSSIVFPSSSQESYYL---SDSHPIFVANN-SPMSMDF 127

Query: 127 SMEDVRNGDRL----DDC-----GSSRKTRQCRLQQFPA---GSSQPEKRAEI-TVEVAT 186
            MED  N        DDC     G+    +  +  Q PA    + +P++ +EI   E  T
Sbjct: 128 CMEDATNTSSYLVEGDDCLNQEMGNGNVEQAGKSHQEPALPNKNLEPKRESEIPQPEPVT 187

Query: 187 KDDKVAPTPSSKIGSASCNE----EEDHIVSPNGLCTSSFSSEDDCNGGITSSSTLSSS- 246
           +      + +SK  S S  +     ++     N    S+ +++ D N G+   S+ S S 
Sbjct: 188 EIKSNNISENSKKRSRSSGDVQKNRQNARSKKNQGSASTTNNDKDGNAGLNGQSSASCSS 247

Query: 247 --------------------GKPRASRGSATDPQSLYARKRRERINERLRMLQSLVPNGT 284
                               GK RASRG+ATDPQSLYARKRRERINERLR+LQ+LVPNGT
Sbjct: 248 DDDSNASQELNGGQAALNLNGKTRASRGAATDPQSLYARKRRERINERLRILQNLVPNGT 307

[Close]
BLAST of Cp4.1LG14g04550 vs. TAIR10
Match: AT2G14760.3 (AT2G14760.3 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 159.5 bits (402), Expect = 3.2e-39
Identity = 109/238 (45.80%), Postives = 141/238 (59.24%), Query Frame = 1 

Query: 67  PYYTLNENDSHPLWLPNNGASLSLDFSMEDVRNGDRLDDCGSSRKTRQCRLQQFPAGSSQ 126
           P  T+ EN  H +  P N  + + D  M         + C SS+K  +         +++
Sbjct: 115 PLETVAENHDHSMLQPENSLTTTTDEKM--------FNQCESSKKRTRATTTDKNKRANK 174

Query: 127 PEKRAEITVEVATKDDKVAPTPSSKIGSASCNEEEDHIVSPNGLCTSSFSSEDDCNGGIT 186
             +R++  VE++ +++    +   +    +  + +   + P   C S    +D+ NGG T
Sbjct: 175 A-RRSQKCVEMSGENEN---SGEEEYTEKAAGKRKTKPLKPQKTCCS----DDESNGGDT 234

Query: 187 --------SSSTLSSSGKPRASRGSATDPQSLYAR-------------KRRERINERLRM 246
                    S  L+ +GK RASRG+ATDPQSLYAR             KRRERINERLR+
Sbjct: 235 FLSKEDGEDSKALNLNGKTRASRGAATDPQSLYARLKQLNKVHCMMVQKRRERINERLRI 294

Query: 247 LQSLVPNGTKVDISTMLEEAVEYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKL 284
           LQ LVPNGTKVDISTMLEEAV+YVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGL+LKL
Sbjct: 295 LQHLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLDLKL 336

[Close]
BLAST of Cp4.1LG14g04550 vs. TAIR10
Match: AT4G33880.1 (AT4G33880.1 ROOT HAIR DEFECTIVE 6-LIKE 2)

HSP 1 Score: 159.1 bits (401), Expect = 4.2e-39
Identity = 109/216 (50.46%), Postives = 131/216 (60.65%), Query Frame = 1 

Query: 67  PYYTLNENDSHPLWLPNNGASLSLDFSMEDVRNGDRLDDCGSSRKTR-QCRLQQFPAGSS 126
           P  T+ EN      L  +  S++   S+   +   R      +++ R   R Q+    S 
Sbjct: 140 PLETVVENHDDEESLLQSEISVTTTKSLTGSKKRSRATSTDKNKRARVNKRAQKNVEMSG 199

Query: 127 QPEKRAEITVEVATKDDKVAPTPSSKIGSAS-CNEEEDHIVSPNGLCTSSFSSEDDCNGG 186
              +  E   E   K  K     S +  S + C EEE +    +G    S S EDD    
Sbjct: 200 DNNEGEEEEGETKLKKRKNGAMMSRQNSSTTFCTEEESNCADQDGGGEDSSSKEDD---- 259

Query: 187 ITSSSTLSSSGKPRASRGSATDPQSLYARKRRERINERLRMLQSLVPNGTKVDISTMLEE 246
              S  L+ +GK RASRG+ATDPQSLYARKRRERINERLR+LQ+LVPNGTKVDISTMLEE
Sbjct: 260 --PSKALNLNGKTRASRGAATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEE 319

Query: 247 AVEYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLN 281
           AV YVKFLQLQIKLLSSDDLWMYAPIA+NGMDIGL+
Sbjct: 320 AVHYVKFLQLQIKLLSSDDLWMYAPIAFNGMDIGLS 349

[Close]
BLAST of Cp4.1LG14g04550 vs. TAIR10
Match: AT5G43175.1 (AT5G43175.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 147.1 bits (370), Expect = 1.7e-35
Identity = 85/151 (56.29%), Postives = 111/151 (73.51%), Query Frame = 1 

Query: 137 VATKDDKVAPTPSSKIGSASCNEEEDHIVSPNGLCTSSFSSEDDCNG-GITSSSTLSSSG 196
           V ++ D + P    K+ S S    E      +G   SS++S DD    G+ S+++ S   
Sbjct: 71  VDSRQDLLKPRKKQKLSSESNLVTEPKTAWRDGQSLSSYNSSDDEKALGLVSNTSKSLKR 130

Query: 197 KPRASRGSATDPQSLYARKRRERINERLRMLQSLVPNGTKVDISTMLEEAVEYVKFLQLQ 256
           K +A+RG A+DPQSLYARKRRERIN+RL+ LQSLVPNGTKVDISTMLE+AV YVKFLQLQ
Sbjct: 131 KAKANRGIASDPQSLYARKRRERINDRLKTLQSLVPNGTKVDISTMLEDAVHYVKFLQLQ 190

Query: 257 IKLLSSDDLWMYAPIAYNGMDIGLNLKLMKQ 287
           IKLLSS+DLWMYAP+A+NG+++GL+  L+ +
Sbjct: 191 IKLLSSEDLWMYAPLAHNGLNMGLHHNLLSR 221

[Close]
BLAST of Cp4.1LG14g04550 vs. TAIR10
Match: AT1G27740.1 (AT1G27740.1 root hair defective 6-like 4)

HSP 1 Score: 144.4 bits (363), Expect = 1.1e-34
Identity = 84/148 (56.76%), Postives = 107/148 (72.30%), Query Frame = 1 

Query: 139 TKDDKVAPTPSSKIGSASCNEEEDHIVSPNGLCTSSFSSEDDCNGGITSSSTLSSSGKPR 198
           T+ +        ++ S S   +E +    +G   S+ SS+D+       +S  S  GK R
Sbjct: 116 TRQELAKSKKKQRVSSESNTVDESNTNWVDGQSLSN-SSDDE------KASVTSVKGKTR 175

Query: 199 ASRGSATDPQSLYARKRRERINERLRMLQSLVPNGTKVDISTMLEEAVEYVKFLQLQIKL 258
           A++G+ATDPQSLYARKRRE+INERL+ LQ+LVPNGTKVDISTMLEEAV YVKFLQLQIKL
Sbjct: 176 ATKGTATDPQSLYARKRREKINERLKTLQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKL 235

Query: 259 LSSDDLWMYAPIAYNGMDIGLNLKLMKQ 287
           LSSDDLWMYAP+AYNG+D+G +  L+ +
Sbjct: 236 LSSDDLWMYAPLAYNGLDMGFHHNLLSR 256

[Close]
BLAST of Cp4.1LG14g04550 vs. TAIR10
Match: AT1G66470.1 (AT1G66470.1 ROOT HAIR DEFECTIVE6)

HSP 1 Score: 88.2 bits (217), Expect = 9.1e-18
Identity = 46/78 (58.97%), Postives = 63/78 (80.77%), Query Frame = 1 

Query: 188 SSTLSSSGKPRASRGSATDPQSLYARKRRERINERLRMLQSLVPNGTKVDISTMLEEAVE 247
           SS ++   KP+ +  S  DPQSL A+ RRERI+ERL++LQ LVPNGTKVD+ TMLE+A+ 
Sbjct: 187 SSGVTGKTKPKPTT-SPKDPQSLAAKNRRERISERLKILQELVPNGTKVDLVTMLEKAIS 246

Query: 248 YVKFLQLQIKLLSSDDLW 266
           YVKFLQ+Q+K+L++D+ W
Sbjct: 247 YVKFLQVQVKVLATDEFW 263

[Close]
BLAST of Cp4.1LG14g04550 vs. NCBI nr
Match: gi|449469332|ref|XP_004152375.1| (PREDICTED: transcription factor bHLH84 [Cucumis sativus])

HSP 1 Score: 374.8 bits (961), Expect = 1.4e-100
Identity = 233/345 (67.54%), Postives = 255/345 (73.91%), Query Frame = 1 

Query: 5   GPISEREWISLTGAYTAEESDFMANLLNNYCLPNELNPGSSSAVPSACLAMAPMDEPSYY 64
           G ISEREWISL+GAYTAEESDFMANLL+NYC+PNELN   S  +PS+  A +  +EPSYY
Sbjct: 3   GAISEREWISLSGAYTAEESDFMANLLSNYCIPNELNSDLSLEIPSSYWASS--NEPSYY 62

Query: 65  SNP------YYTLNE---------NDSHP-LWLPNNGASLSLDFSMEDVRNGDRLDDCGS 124
           S+        Y L++         NDS+P LWLPNNGASLSLDFS+EDVRN D LDD GS
Sbjct: 63  SSDASDSSNIYALSQPNNNLPYTFNDSNPTLWLPNNGASLSLDFSIEDVRNADCLDDNGS 122

Query: 125 S-RKTRQC-RLQQFPAGS------SQPEKRA-EITVEVATKDDKVAPTP----------- 184
           + RKTRQC RLQQ PA S      SQP++RA ++ VE A +DDKV P             
Sbjct: 123 NIRKTRQCSRLQQSPADSVVNGKSSQPKRRANDVMVEEAMRDDKVGPVSVENFSRKRPQS 182

Query: 185 ---------------SSKIGSASCNEEEDHIVSPNGLCTSSFSSEDDCN------GGITS 244
                          +SKI S SCNEE D IVSPNG CTSSFSSEDDCN      GGITS
Sbjct: 183 LLDVEKTKRSGRARKTSKIASGSCNEE-DQIVSPNGQCTSSFSSEDDCNEAQENNGGITS 242

Query: 245 SSTLSSSGKPRASRGSATDPQSLYARKRRERINERLRMLQSLVPNGTKVDISTMLEEAVE 293
           SST  S+GKPRASRGSATDPQSLYARKRRERINERLR+LQSLVPNGTKVDISTMLEEAV+
Sbjct: 243 SST--SNGKPRASRGSATDPQSLYARKRRERINERLRILQSLVPNGTKVDISTMLEEAVQ 302

[Close]
BLAST of Cp4.1LG14g04550 vs. NCBI nr
Match: gi|659108790|ref|XP_008454391.1| (PREDICTED: transcription factor bHLH84-like [Cucumis melo])

HSP 1 Score: 367.5 bits (942), Expect = 2.2e-98
Identity = 229/345 (66.38%), Postives = 253/345 (73.33%), Query Frame = 1 

Query: 5   GPISEREWISLTGAYTAEESDFMANLLNNYCLPNELNPGSSSAVPSACLAMAPMDEPSYY 64
           G ISEREWISL+GAYTAEESDFMANLLNNYC+PNELN   +  +PS+  A +  +EPSYY
Sbjct: 4   GAISEREWISLSGAYTAEESDFMANLLNNYCIPNELNSDLTLEIPSSYWASS--NEPSYY 63

Query: 65  SNP------YYTLNE---------NDSHPLWLPNNGAS-LSLDFSMEDVRNGDRLDDCGS 124
           S+        Y L++         N+S+PLW+PNNGAS LSLDFS+EDV N D LDD GS
Sbjct: 64  SSDASDSSNIYALSQPNNNLPYTFNESNPLWMPNNGASSLSLDFSVEDVGNADCLDDNGS 123

Query: 125 S-RKTRQC-RLQQFPAGS------SQPEKRAE-ITVEVATKDDKVAPTP----------- 184
           + RKTRQC RLQQ PA S      SQ ++RA+ + VE A +DDKV P             
Sbjct: 124 NIRKTRQCSRLQQSPADSVVNGKSSQQKRRADGVMVEEAMRDDKVGPVSVENASRKRPQS 183

Query: 185 ---------------SSKIGSASCNEEEDHIVSPNGLCTSSFSSEDDCN------GGITS 244
                          +SKI S SCNEE D IVSPNG CTSSFSSEDDCN      GGITS
Sbjct: 184 LLDVEKTKRSGRARKTSKIASGSCNEE-DQIVSPNGQCTSSFSSEDDCNEAQEINGGITS 243

Query: 245 SSTLSSSGKPRASRGSATDPQSLYARKRRERINERLRMLQSLVPNGTKVDISTMLEEAVE 293
           SST  S+GKPRASRGSATDPQSLYARKRRERINERLR+LQSLVPNGTKVDISTMLEEAV+
Sbjct: 244 SST--SNGKPRASRGSATDPQSLYARKRRERINERLRILQSLVPNGTKVDISTMLEEAVQ 303

[Close]
BLAST of Cp4.1LG14g04550 vs. NCBI nr
Match: gi|823160594|ref|XP_012480143.1| (PREDICTED: transcription factor bHLH84 [Gossypium raimondii])

HSP 1 Score: 207.6 bits (527), Expect = 2.9e-50
Identity = 140/295 (47.46%), Postives = 181/295 (61.36%), Query Frame = 1 

Query: 1   MEPIGPISEREWISLTGAYTAE-ESDFMANLLNNYCLPNELNPGSSSAVPSACLAMAPMD 60
           M+ +G + E +W   +G YT + E+DFMA LL+N                  C  +  +D
Sbjct: 1   MDSMGTLLEGDWSCFSGMYTTDQEADFMAQLLSN------------------CPQLPDID 60

Query: 61  EPSYYSNPYYTLNENDSHPLWLPNNGASLSLDFSMEDVRNGDRL----DDCGSSRKTRQC 120
             +Y S         DS+P+++ NN + +S+DF MED           DDC      +  
Sbjct: 61  MSNYLS---------DSNPVFVTNN-SPISMDFCMEDGTKTSFFLVEPDDCLDPEMGKNG 120

Query: 121 RLQQFPAGSSQPEKRAEITVEVATKDDKVAPTP----SSKIGSASCNEEEDHIVSPNGLC 180
            +++ P    +PEK++       + D  V  +     S K  + + N++ED     NG  
Sbjct: 121 NVEKEP--KPEPEKKSSNKRSRNSGDVHVQKSKRNGRSKKNQTIAANDDEDGNGGLNGQS 180

Query: 181 TSSFSSEDDCNGGITSSS----TLSSSGKPRASRGSATDPQSLYARKRRERINERLRMLQ 240
            +S SSEDD NGG +S S    TL+ +GK RASRG+ATDPQSLYARKRRERINERLR+LQ
Sbjct: 181 WASCSSEDDSNGGASSGSKGETTLNLNGKTRASRGAATDPQSLYARKRRERINERLRILQ 240

Query: 241 SLVPNGTKVDISTMLEEAVEYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLK 283
           +LVPNGTKVDISTMLEEAV+YVKFLQLQIKLLSSDDLWMYAPIAYNGMDIG++LK
Sbjct: 241 NLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGIDLK 265

[Close]
BLAST of Cp4.1LG14g04550 vs. NCBI nr
Match: gi|566187109|ref|XP_002313175.2| (basic helix-loop-helix family protein [Populus trichocarpa])

HSP 1 Score: 207.2 bits (526), Expect = 3.8e-50
Identity = 156/358 (43.58%), Postives = 197/358 (55.03%), Query Frame = 1 

Query: 1   MEPIGPISEREWISLTGAYTAEESDFMANLLNNYCLPNELNPGSSSAVPSA-------CL 60
           ME IG ++E EW SL G YT+EE+DFMA LL N   PN+++  S+  VPS+         
Sbjct: 1   MESIGSMAEGEWSSLGGMYTSEEADFMAQLLGN--CPNQVDSSSNFGVPSSFWPNHEPTT 60

Query: 61  AMAPMDEPSYYSNPYYTLN----------------------------ENDSHPLWLPNNG 120
            M   +E  +YS  +  +N                             +DSHP+ L NN 
Sbjct: 61  DMEGANECLFYSLDFANINLHHFSQGSSSYSGGSGILFPNTSQDSYYMSDSHPI-LANNN 120

Query: 121 ASLSLDFSMEDVRNGDRLDDCGSSRKT--------------------RQCRLQQFPAG-- 180
           +S+S+DF M D    +  DDC +   +                    R  R  + PA   
Sbjct: 121 SSMSMDFCMGDSYLVEG-DDCSNQEMSNSNEEPGGNQTVAALPENDFRAKREPEMPASEL 180

Query: 181 -----SSQP----EKRAEITVEVATKDDKVAPTPSSKIGSASCNEEEDHIVSPNGLCTSS 240
                SS P    +KR+  + +        +   S K+ S S N+E  +    NG  +S 
Sbjct: 181 PLEDKSSNPPQISKKRSRNSGDAQKNKRNASSKKSQKVASTSNNDEGSN-AGLNGPASSG 240

Query: 241 FSSEDDCNG------GITSS------STLSSSGKPRASRGSATDPQSLYARKRRERINER 281
             SED+ N       G +SS      +TL+SSGK RASRG+ATDPQSLYARKRRERINER
Sbjct: 241 CCSEDESNASHELNRGASSSLSSKGTATLNSSGKTRASRGAATDPQSLYARKRRERINER 300

[Close]
BLAST of Cp4.1LG14g04550 vs. NCBI nr
Match: gi|743795155|ref|XP_011001917.1| (PREDICTED: transcription factor bHLH84-like isoform X1 [Populus euphratica])

HSP 1 Score: 206.8 bits (525), Expect = 5.0e-50
Identity = 155/358 (43.30%), Postives = 197/358 (55.03%), Query Frame = 1 

Query: 1   MEPIGPISEREWISLTGAYTAEESDFMANLLNNYCLPNELNPGSSSAVPSA-------CL 60
           ME IG ++E EW SL G YT+EE+DFMA LL N C PN+++  S+  VPS+         
Sbjct: 1   MESIGSMAEGEWSSLGGMYTSEEADFMAQLLGN-CPPNQVDSSSNFGVPSSFWPNHEPTT 60

Query: 61  AMAPMDEPSYYSNPYYTLN----------------------------ENDSHPLWLPNNG 120
            M   +E S+YS  +  +N                             +DSHP+ L  N 
Sbjct: 61  DMEGANECSFYSLDFANINLHHFSQGSSSYSGGSGILFPNTSQDSYYMSDSHPI-LAINN 120

Query: 121 ASLSLDFSMEDVRNGDRLDDCGSSRKT--------------------RQCRLQQFPAG-- 180
           +S+S+DF M D    +  DDC +   +                    R  R  + PA   
Sbjct: 121 SSMSMDFCMGDSYLVEG-DDCSNQEMSNSNEEPGGNQTVAALPENDFRAKREPEMPASEL 180

Query: 181 -----SSQP----EKRAEITVEVATKDDKVAPTPSSKIGSASCNEEEDHIVSPNGLCTSS 240
                +S P    +KR+  + +        +   S K+ S S N +E      NG  +S 
Sbjct: 181 PLEDKNSNPPQISKKRSRNSGDAQKNKRNASSKKSQKVASTS-NNDEGSDAGLNGPASSG 240

Query: 241 FSSEDDCNG------GITSS------STLSSSGKPRASRGSATDPQSLYARKRRERINER 281
             SED+ N       G +SS      +TL+SSGK RASRG+ATDPQSLYARKRRERINER
Sbjct: 241 CCSEDESNASHELNRGASSSLSSKGTATLNSSGKTRASRGAATDPQSLYARKRRERINER 300

The following BLAST results are available for this feature:
BLAST of Cp4.1LG14g04550 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BH084_ARATH9.4e-4148.44Transcription factor bHLH84 OS=Arabidopsis thaliana GN=BHLH84 PE=2 SV=1[more]
BH085_ARATH7.5e-3850.46Transcription factor bHLH85 OS=Arabidopsis thaliana GN=BHLH85 PE=2 SV=1[more]
BH139_ARATH2.9e-3456.29Transcription factor bHLH139 OS=Arabidopsis thaliana GN=BHLH139 PE=3 SV=1[more]
BH054_ARATH1.9e-3356.76Transcription factor bHLH54 OS=Arabidopsis thaliana GN=BHLH54 PE=2 SV=1[more]
BH083_ARATH1.6e-1658.97Transcription factor bHLH83 OS=Arabidopsis thaliana GN=BHLH83 PE=2 SV=1[more]
BLAST of Cp4.1LG14g04550 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KT10_CUCSA9.7e-10167.54Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000890 PE=4 SV=1[more]
A0A0D2NHC2_GOSRA2.0e-5047.46Uncharacterized protein OS=Gossypium raimondii GN=B456_005G231900 PE=4 SV=1[more]
B9HMZ0_POPTR2.7e-5043.58Basic helix-loop-helix family protein OS=Populus trichocarpa GN=POPTR_0009s09210... [more]
B9GI92_POPTR8.6e-4945.68Basic helix-loop-helix family protein OS=Populus trichocarpa GN=POPTR_0001s30150... [more]
A0A061E855_THECC1.1e-4843.27Basic helix-loop-helix DNA-binding superfamily protein, putative OS=Theobroma ca... [more]
BLAST of Cp4.1LG14g04550 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G14760.33.2e-3945.80 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT4G33880.14.2e-3950.46 ROOT HAIR DEFECTIVE 6-LIKE 2[more]
AT5G43175.11.7e-3556.29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT1G27740.11.1e-3456.76 root hair defective 6-like 4[more]
AT1G66470.19.1e-1858.97 ROOT HAIR DEFECTIVE6[more]
BLAST of Cp4.1LG14g04550 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449469332|ref|XP_004152375.1|1.4e-10067.54PREDICTED: transcription factor bHLH84 [Cucumis sativus][more]
gi|659108790|ref|XP_008454391.1|2.2e-9866.38PREDICTED: transcription factor bHLH84-like [Cucumis melo][more]
gi|823160594|ref|XP_012480143.1|2.9e-5047.46PREDICTED: transcription factor bHLH84 [Gossypium raimondii][more]
gi|566187109|ref|XP_002313175.2|3.8e-5043.58basic helix-loop-helix family protein [Populus trichocarpa][more]
gi|743795155|ref|XP_011001917.1|5.0e-5043.30PREDICTED: transcription factor bHLH84-like isoform X1 [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0005488 binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g04550.1Cp4.1LG14g04550.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3DG3DSA:4.10.280.10coord: 208..262
score: 3.7
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 213..253
score: 2.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 209..258
score: 6.7
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROFILEPS50888BHLHcoord: 203..252
score: 1
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainunknownSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 203..269
score: 1.18
NoneNo IPR availablePANTHERPTHR16223FAMILY NOT NAMEDcoord: 158..284
score: 9.4
NoneNo IPR availablePANTHERPTHR16223:SF9TRANSCRIPTION FACTOR BHLH139-RELATEDcoord: 158..284
score: 9.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG14g04550Cucsa.097490Cucumber (Gy14) v1cgycpeB0188
Cp4.1LG14g04550Cucsa.219180Cucumber (Gy14) v1cgycpeB0593
Cp4.1LG14g04550CmaCh16G003240Cucurbita maxima (Rimu)cmacpeB344
Cp4.1LG14g04550CmaCh04G004510Cucurbita maxima (Rimu)cmacpeB715
Cp4.1LG14g04550CmaCh09G002850Cucurbita maxima (Rimu)cmacpeB035
Cp4.1LG14g04550CmaCh11G017010Cucurbita maxima (Rimu)cmacpeB114
Cp4.1LG14g04550CmoCh11G014190Cucurbita moschata (Rifu)cmocpeB092
Cp4.1LG14g04550CmoCh04G004830Cucurbita moschata (Rifu)cmocpeB668
Cp4.1LG14g04550CmoCh16G003420Cucurbita moschata (Rifu)cmocpeB307
Cp4.1LG14g04550Cla006419Watermelon (97103) v1cpewmB204
Cp4.1LG14g04550Csa4G000890Cucumber (Chinese Long) v2cpecuB219
Cp4.1LG14g04550MELO3C017996Melon (DHL92) v3.5.1cpemeB201
Cp4.1LG14g04550MELO3C018516Melon (DHL92) v3.5.1cpemeB182
Cp4.1LG14g04550ClCG10G010480Watermelon (Charleston Gray)cpewcgB190
Cp4.1LG14g04550CSPI04G00430Wild cucumber (PI 183967)cpecpiB221
Cp4.1LG14g04550Lsi03G010260Bottle gourd (USVL1VR-Ls)cpelsiB168
Cp4.1LG14g04550MELO3C018516.2Melon (DHL92) v3.6.1cpemedB220
Cp4.1LG14g04550MELO3C017996.2Melon (DHL92) v3.6.1cpemedB243
Cp4.1LG14g04550MELO3C016810.2Melon (DHL92) v3.6.1cpemedB242
Cp4.1LG14g04550CsaV3_4G000380Cucumber (Chinese Long) v3cpecucB0263
Cp4.1LG14g04550CsaV3_4G034980Cucumber (Chinese Long) v3cpecucB0269
Cp4.1LG14g04550CsaV3_2G026190Cucumber (Chinese Long) v3cpecucB0245
Cp4.1LG14g04550Bhi09G002669Wax gourdcpewgoB0310
Cp4.1LG14g04550Bhi11G000956Wax gourdcpewgoB0266
Cp4.1LG14g04550CsGy4G023010Cucumber (Gy14) v2cgybcpeB492
Cp4.1LG14g04550CsGy4G000380Cucumber (Gy14) v2cgybcpeB485
Cp4.1LG14g04550Carg19683Silver-seed gourdcarcpeB0407
Cp4.1LG14g04550Carg08121Silver-seed gourdcarcpeB0523
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG14g04550Cp4.1LG01g02530Cucurbita pepo (Zucchini)cpecpeB234
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG14g04550Cucumber (Gy14) v1cgycpeB0215
Cp4.1LG14g04550Cucumber (Chinese Long) v2cpecuB229
Cp4.1LG14g04550Melon (DHL92) v3.5.1cpemeB200
Cp4.1LG14g04550Melon (DHL92) v3.5.1cpemeB208
Cp4.1LG14g04550Cucumber (Gy14) v2cgybcpeB747
Cp4.1LG14g04550Melon (DHL92) v3.6.1cpemedB250
Cp4.1LG14g04550Cucumber (Chinese Long) v3cpecucB0283
Cp4.1LG14g04550Wax gourdcpewgoB0304