Cp4.1LG14g02310 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG14g02310
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTranscription initiation factor IIE subunit beta
LocationCp4.1LG14 : 3145917 .. 3152367 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGGGTTGGAATTTGGGTTTGCTCAGCGATGGAAATTCGTCGGTTCGAACCCGTTTTAACCTTCCTCGAAGCACACATCCCCCATATCTCTCTCTCGCGCGCTTTCCCAATTCTAGCCTCCATCTTCCTTCTTCTCGATCTCCATAGCTGCACAGAGGCGAACTCCATTCAACAATCCATTCCATTACGTATACTACAGATTGTTAAACATCGTCCCGCGATCCACCGTCGTCTTATCCACGGCGGTCGATTCTGTTCTCTTTAACCGATGCAATTTGTGGTATTCTAGTTACTACCCTTTTCTTTTTTTGCGTATTTTCAATTGTTGGTTGGACTTGATGCGATGCCCGTCGTATTGATTTTCATGGGTGAATCTATTTTGATGATTTCTATCGTTGTTTTTGTTGTTAGGGTTGGGTATAATTGAAACTCTGAGGGGATTCGGATTCGATGGCGTTGCAAGAAAAACTAGATAGGTTTAAGAGACAGCAAGAAAGATGTCAGACTACCTTGTCTGGCATTGCTGCATCCAAGACTACTACTACTACACCCAGGTTTACGCCTGCTCCAGCCGCTTCAAGACCTCCGGCTCCTGCTATAAAATTTTCAAATGACACTGAGAGACTTCAACACATTAACAGCATAAGGAAATCCCCAGTCGGGGCTCAGATCAAGAGGGTTATTGACCTGCTTCTGGAGGTTCACACCTATCGCCCATCTTTCTTATTTCCCCCTTTTTGTTTTCTTACTTATACCTTATCTGCTTTACCTGGACTATTGTGTTCGATCGAATTCTTTGGAAGGCTGTGTATAGGGTAGGATTTAGTGCATGTTTTTGGGAGTGATTTTAAAAGGGCTAAAATTACTTTTGCCATGTTCATCAAAAGGACTCTAAAAACATGTTTTTTATAATTCAAAATAAATTTAATGTTTGATTTTGTACGAATATGTAATTTTCATAACATCAAAATTAATTTTCAAGTATTAAAAACATGTTTTTAGTGTTTTTTTTTTTAATATAAGAAGTGTTTTTAACTATCTCAAAGTCACTCCCAAACATGTCATGTTAATAGACACAGATAGATTCAAAATGAGCTGACCTTATGCTGAAATTTATCATATTTCTTGTTTTTAGTCTGTCCAAATTTTGCTAAATTCGATACATGTCTTTCTGAATGATCAATTTTTGAACCGGGAGATTTGGCTGGTTTGAGTACTTTTTCAGGTAGTGAAACTTGTGATTGCCCGTTAAGATGGCAAGAGGAGCTAGGATCCTCTTTAATGGCTTTTATGTGGTCGTTTTCCTTACTTTGTGTTGGTGAAAAAAAATGCATTTGAACATGCCAATCCCCTTCCCGTACTCTCTGGTTTTGAATTGGCTGTGGAAAAGCTAAAAAAAGTCCTGAAATGCATTCTCTCTACTGTTAGTTAATTCAAACCTCAGGGGTATGTTACAATCTTACAGCTTGCTTATTGTGCATGTTAACAGACAAGACAAGCCTTTACACCTGAGCAAATCAATGAATCATGTTATGTTGATATAAATTCCAACAAAGCTGTCTTTGATAGTTTGCGGAATAACCCAAAGGTGCACTATGATGGGAGGCGTTTCTCTTACAAGGTAATTTAATTTTTCAAGCACCTGTATAATTTGCATGAACTTGTTCTTGTTTGGTTTAAAAGTTTAAACATTCAAGATGATGTTTTTTCCTCTTTTTTCTGTTTTTGATGTATTCAGTCCAAGCATGATCTGAAGGATAAGAATCAACTTCTTTACTTGATTCGGAAATTTCCAGAAGGCATTGCTGTCATTGATCTCAAGGATTCTTATCCAAGTGTTATGGAAGATTTGCAAGTATGTGTAATTGAGAATTTTTTTTTTTATATGCTTTCCCCGTTTTAAATTCGAAAAAGTGAAAATAACATATCACCCTTGGATGACGCTCTCCTCATTTGAACTGCTTGGGTAACAACCTTTGTGAAGCTTAATATACTGACTATTTTGGACATCAAATGTCTAGTGTAAATTTTGAGATTTTAAGGCTGTGTATTTTCTTTGCACAATAATTGGAATTATAAGTAGTTTACAATTCTAATTACTCTGGAGATTAGTGCAAGAGTCTGTTGAGACCTGGATTCTTATTTGTATACGATATTAAACATAGTGTAAATTAAAGTCATTAAGATATTAAGTTTTGATTTGTCCAATAAAAGGGGTATTTTGGACCTGGATTCTTATTTGTATACGATATTAAACATAGTGTAAATTAAAGTCATTAAGATATTAAGTTTTGATTTGTCCAATAAAAGGGGTATTTTGGACCTGGATTCTTATTTGTATACGATATTAAACATAGTGTAAATTAAAGTCATTAAGATATTAAGTTTTGATTTGTCCAATAAAAGGGGTATTTTGGACCTGGATTCTTATTTGTATACGATATTAAACATAGTGTAAATTAAAGTCATTAAGATATTAAGTTTTGATTTGTCCAATAAAAGGGGTATTTTGAGAGTTTATGAAAAACAACTTTCTTTGGTAGCTGCTGAATGGTGATTTTGGGTACCCAATAACCTTAAACGAAAATAGAAGGAAATATTTGTTTACCAAACTAGCTGTGAGGAAAGCCCCCAATGTCCTTCGCTAGTATACCCTTGTGTTTTCTTTCCTCGTTTTTTCTTCTCTTCTCTCCATTCCTCCAGTTCCAGACTGATTTTAGAGAAAGTTCGTTTCTTCCTACAGAAATCTGATTGATGCCTGTATGGCTTGCTAACTATTCATGTCAATGTTCTGGGTTCTTGGTCATGTTATACCTCACAAGTCAGCTTGTTTAATTCTCTTCCAGGTTAGACTGTAGTGTCTCCTTGTACACTAGAAGGCTTTGTTCATTCAACAATTCCTGTTTAAGGCTATTGTGAAAACCTTGGCTGGTAGCTTGAAGATTGAAATGAGTCCTTTCTAATACGATTTCTAACACTCAAGGTGCCTTTATAGCCGGTTGGAAAATTTTAGACCAAGTGCTTATAGCTAATGAAGCTATTGAGGACCATAAGGAAACGAAAGGAAAGAAGAGGGGATTATCTTTAAAATTGACTTTGAGTAAGTTGATGATCATGTGGATTGGGACTTTTTGGACAAAGCTTTAGGGAAGAAAGTTTTTTGGGGTTAAATGGAGAGGTAAAATGTATAATTGTATTAGGTCAGTTAATTTTTTCATTTTTGTCAACGGGAGGTCTAGAGGTAAGATTTCAACAATGAGAGGCCTTAGACAAGGGGGTTCTCTTTCTCCTTTTCTCTTTATCTTGGTGGTGGATGTCGTGTAGATGAGTATCAGCTGGTGTGGATAAGGGTGTTTTCAAGAGTTTTAAGGTGGGCAAGGACTTAGTCTATCTTTCGCTTCTTCAGTTTGCGGACAGTTATGACCTTCGAGTGGGGAGTCGAGGGGTGAATGTAAATTCCTCTGGAAAGCTATATCTTCAAGTCTTCCCTCTTTTTCTCAATTCATTAATTGTTTTTTGGGAGACAAACTTTGGGTGATTTTTCCCCTCATCTCTACTTTCTCTCGGATAAGAAGTTACATCGGGTGGCTTCGGTGTTGTCATCTACTGACCAATCTTCTTTGATTTCTTTGCACTTTCGTCACCCTCTATCAGATAGAGAGGAGGTTGAGGTGATAGATCTTCTTTTTATCCTTCAAGACCGGCCCTGGGAGGAGGGATGTTAGAAATTAGAAGGTGGTCCCCTGATCCTAATAGATGATTCTCTTGTCATTCCTTCTTCAACCTTTTATCCTCTCCCCCTGCTTAATCGGCTAATCGGCTGCTCTTGAGGCGATAGTCTTCTCCCCTTTACGGAAGATAAAAGTTACAGAAAATGTAAAGGTTTTTTCTTGGCAGGTTTTATTAGGGCGAGTCAATACCTTAGATTGTGTCCAAAGGCATTTCTCCTTCGCCTTGTTTCCGCAATCGTGCATTCTCTGTAGGAGGGATCATGATGATCCTAGTCACTTGTTGTGGGAGTGCCAGTTCGTGAATTACCATTAGGACCGNGTGGTCCCCTGATCCTAATAGATGATTCTCTTGTCATTCCTTCTTCAACCTTTTATCCTCTCCCCCTGCTTAATCGGCTAATCGGCTGCTCTTGAGGCGATAGTCTTCTCCCCTTTACGGAAGATAAAAGTTACAGAAAATGTAAAGGTTTTTTCTTGGCAGGTTTTATTAGGGCGAGTCAATACCTTAGATTGTGTCCAAAGGCATTTCTCCTTTGCCTTGTTTCCGCAATCGTGCATTCTCTGTAGGAGGGATCATGATGATCCTAGTCACTTGTTGTGGAAGTGCCAGTTCGTGAATTACCATTAAGACCAGTGGCAGAGTTCTTTAGGGGTTATTGGGGCTCGGAATAGGGATGGGTGTTCTTTTTTGAAAGAGGTGGCTTTGCACTTCCCTTTTAGGGAGAAGCGTATAGTATTTTGTCAGGCAAGCTTCCTTGCTATTTTGTGTGATGTTTGGTTGGAGCGTAAGAGTAGAATTTGTAGGGATGTGGGGAAATCTAGAGTGGAGGTTTGGGGGTTGGTGAGCTTTAATGCTTCCATTTGGGCTTCGGTCACTAAACCGTTTTGTAAGTATGATACCGGTCTTGTTTTTTGTTCACTCTTGTNTACTACTCGATATGAAACTTTATTAACTTTACTGAAGAACGAGACTTTTAATTAAGATCCAAAGTTAAAAATAAAAAATAATAAAAAAAATAATAATAAAAAAAAACTATTTCTAGTTGAAGGGAAGATATCTCGTTCTTTAACATGCTTACGTGGACCTGTCTTTTGCCAGCACGATGCTTGCTTCTCTCTCAACTTTGAAAGTTAAAAATTGAAATCAAAGGATTTAACCCCATGATTTATAATCCTCGTCAAAACTAATGGATTTTCTAACGAGGAGCAAAGTTTTCACTGAAAAACATGAAATAATTGAAAGAGCAAACAAAAGTACAATCCAATAAGAGGAGCCAATTTGAGATTAACCAAACGAAAAAGAGTCCAATCTAAAAGAATAAGGTCTAACAATAGTTACAACAAGTCTTGGAAACCAATGTCCAAAGGGAAGCATTATTCTTATGGTTGATGCATCTAAGCTGTAGTTGAGAATTTTCAGAAATATACTAGAATTGCTTTTGGTATAAAACTTGTACCATTAAGCTAAAAAAAGGTGGTAGGGTCCAAAAATCCATGTCACAACAACTTCAGTTCCTCGAAGTGATCTTGGTAACCAGAGTAAAACATTTGAGGCTAGTATGAAGATGAAGAACTTGAAGATAACATGTTATTGAGCTTGAAGACTTTGGTATGGCATTCAGAGATTCATTATGACTTAAGTTATGTCAACTTCCCAAATAATGTTTGAAAAATCAACAGTACAAGCATTCTTCATGATATTAGTGAAAAAAGATGAACTTTCCTTGCGCTTGTGGATCAGTTTATCAGTTATTGAGAGAAGTAATTATTTTATTTCACTAGTAGATTACTATGGAAGTTCTGTTAGAATTTGGTTCTTTTTATTGTAAATATCTGATACGTCCATATTTATCTGATACGTCACGAGTTTTACTTATAGGTATTGATTTGGAGGTTGTTTCTTGTAAAGTATGTCTATTTGTTTCCATACTTGTTGATCACCAGTTTTTTGGCCTCCCCAACTTTATGAACTTTGTTTTGATGGAACCGTCTTCTTTGCTTATTAATGAATGGAAAGCACATGGATGTACTCTTCTTTGGTTATATAATGAATGGAAAACACAGTCCATTAGCTTTGCATAATCCTTTCCCCTCTTGTTTAGGCCCTAAAAGCCTCAGGCCAGGTTTGGCTTCTCTCGAACTTTGATTCACAAGAAGATATTGCATACCCAAATGACCCTCGAATTCAAATCAAAGTAGACGATGATCTGAAGCAACTGTTTCGGGAAATTGAATTACCTCGTGATATGCTCGATGTTGAAAAGGATCTGCAGAAGAATGGGATGAAGCCTGCTACCAACACTGCAAAGAGGCGAGCCAATGCACAAAACGTGGCGTCCTCGAAACCAAAGCCGAAGAAAAAGAAGCAAGAGATCAGCAAGAGGACCAAGCTCACCAATGCACATCTTCCGGAGCTCTTCAAGAATTAAAGAACCATATGCTCTTATACTGTCATCTGTGGGCTGATATGCGTAGTCCAAGGACTCTGTAGATAGCATTCAACCATCCATCCATCCATCCCTACTGTTTGATGTATTGCCTTTTGTGAATGTTCTGCCTTTACTTCAAGTAATTGAATAATTTGAATATAAGAGAGAGAGGTTCATTCAACTAGACATATGACATTACAAGTTGATCATTTGTGCAAACTTCTAAATTCTATAATTTCAAGTTCATTTTATTTTAGAACAGTTGATATGTCCATTACATTCATTTGCCACA

mRNA sequence

CGGGTTGGAATTTGGGTTTGCTCAGCGATGGAAATTCGTCGGTTCGAACCCGTTTTAACCTTCCTCGAAGCACACATCCCCCATATCTCTCTCTCGCGCGCTTTCCCAATTCTAGCCTCCATCTTCCTTCTTCTCGATCTCCATAGCTGCACAGAGGCGAACTCCATTCAACAATCCATTCCATTACGTATACTACAGATTGTTAAACATCGTCCCGCGATCCACCGTCGTCTTATCCACGGCGGTCGATTCTGTTCTCTTTAACCGATGCAATTTGTGGGTTGGGTATAATTGAAACTCTGAGGGGATTCGGATTCGATGGCGTTGCAAGAAAAACTAGATAGGTTTAAGAGACAGCAAGAAAGATGTCAGACTACCTTGTCTGGCATTGCTGCATCCAAGACTACTACTACTACACCCAGGTTTACGCCTGCTCCAGCCGCTTCAAGACCTCCGGCTCCTGCTATAAAATTTTCAAATGACACTGAGAGACTTCAACACATTAACAGCATAAGGAAATCCCCAGTCGGGGCTCAGATCAAGAGGGTTATTGACCTGCTTCTGGAGACAAGACAAGCCTTTACACCTGAGCAAATCAATGAATCATGTTATGTTGATATAAATTCCAACAAAGCTGTCTTTGATAGTTTGCGGAATAACCCAAAGGTGCACTATGATGGGAGGCGTTTCTCTTACAAGTCCAAGCATGATCTGAAGGATAAGAATCAACTTCTTTACTTGATTCGGAAATTTCCAGAAGGCATTGCTGTCATTGATCTCAAGGATTCTTATCCAAGTGTTATGGAAGATTTGCAAGCCCTAAAAGCCTCAGGCCAGGTTTGGCTTCTCTCGAACTTTGATTCACAAGAAGATATTGCATACCCAAATGACCCTCGAATTCAAATCAAAGTAGACGATGATCTGAAGCAACTGTTTCGGGAAATTGAATTACCTCGTGATATGCTCGATGTTGAAAAGGATCTGCAGAAGAATGGGATGAAGCCTGCTACCAACACTGCAAAGAGGCGAGCCAATGCACAAAACGTGGCGTCCTCGAAACCAAAGCCGAAGAAAAAGAAGCAAGAGATCAGCAAGAGGACCAAGCTCACCAATGCACATCTTCCGGAGCTCTTCAAGAATTAAAGAACCATATGCTCTTATACTGTCATCTGTGGGCTGATATGCGTAGTCCAAGGACTCTGTAGATAGCATTCAACCATCCATCCATCCATCCCTACTGTTTGATGTATTGCCTTTTGTGAATGTTCTGCCTTTACTTCAAGTAATTGAATAATTTGAATATAAGAGAGAGAGGTTCATTCAACTAGACATATGACATTACAAGTTGATCATTTGTGCAAACTTCTAAATTCTATAATTTCAAGTTCATTTTATTTTAGAACAGTTGATATGTCCATTACATTCATTTGCCACA

Coding sequence (CDS)

ATGGCGTTGCAAGAAAAACTAGATAGGTTTAAGAGACAGCAAGAAAGATGTCAGACTACCTTGTCTGGCATTGCTGCATCCAAGACTACTACTACTACACCCAGGTTTACGCCTGCTCCAGCCGCTTCAAGACCTCCGGCTCCTGCTATAAAATTTTCAAATGACACTGAGAGACTTCAACACATTAACAGCATAAGGAAATCCCCAGTCGGGGCTCAGATCAAGAGGGTTATTGACCTGCTTCTGGAGACAAGACAAGCCTTTACACCTGAGCAAATCAATGAATCATGTTATGTTGATATAAATTCCAACAAAGCTGTCTTTGATAGTTTGCGGAATAACCCAAAGGTGCACTATGATGGGAGGCGTTTCTCTTACAAGTCCAAGCATGATCTGAAGGATAAGAATCAACTTCTTTACTTGATTCGGAAATTTCCAGAAGGCATTGCTGTCATTGATCTCAAGGATTCTTATCCAAGTGTTATGGAAGATTTGCAAGCCCTAAAAGCCTCAGGCCAGGTTTGGCTTCTCTCGAACTTTGATTCACAAGAAGATATTGCATACCCAAATGACCCTCGAATTCAAATCAAAGTAGACGATGATCTGAAGCAACTGTTTCGGGAAATTGAATTACCTCGTGATATGCTCGATGTTGAAAAGGATCTGCAGAAGAATGGGATGAAGCCTGCTACCAACACTGCAAAGAGGCGAGCCAATGCACAAAACGTGGCGTCCTCGAAACCAAAGCCGAAGAAAAAGAAGCAAGAGATCAGCAAGAGGACCAAGCTCACCAATGCACATCTTCCGGAGCTCTTCAAGAATTAA

Protein sequence

MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQNVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Homology
[Close]
BLAST of Cp4.1LG14g02310 vs. Swiss-Prot
Match: T2EB_DICDI (General transcription factor IIE subunit 2 OS=Dictyostelium discoideum GN=gtf2e2 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.4e-14
Identity = 71/270 (26.30%), Postives = 141/270 (52.22%), Query Frame = 1 

Query: 10  FKRQQERCQTTLSGIAA-SKTTTTTPRFTPAPAASRPPAPAIKFSND-TERLQHINSIRK 69
           FK  Q +   TL+ I   S +T +  ++ P  +     + A + S+  T        +++
Sbjct: 6   FKETQMKAIETLNSIKKPSSSTNSAFKYIPKISGGGGSSSANRQSSIYTANTLRDKQVKE 65

Query: 70  SPVGAQIKRVIDLL--LETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVHYDGR-RF 129
            P    +  +++ L  LE   A T E ++ + ++ I+    + + LRNN K+   G  RF
Sbjct: 66  KPSNRIVYDIVNYLKTLEGIPADTKEIMHSTNHM-IDDKPEILELLRNNEKIIDHGNDRF 125

Query: 130 SYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNFDSQE 189
           S+K K +++ +  +L L+  +P GI V +L +SY +   D++ LK + Q++ +   +S  
Sbjct: 126 SFKPKFNVRTQRDILDLLPNYPGGILVSELAESYNNAESDVKKLKETKQIFAIKAAESAC 185

Query: 190 DIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQNVA 249
           DI +PND R+++ +  +L  +++ I+LP +  D+EK+++  G+    +  +   +A+   
Sbjct: 186 DIIFPNDERLRVPLSSELVDMWKSIKLPNE-ADLEKEMKDAGL----SVVESVESARQTK 245

Query: 250 SSKPKPKKKKQEISKRTKLTNAHLPELFKN 275
           S+K K ++KK    + TK+TN H+     N
Sbjct: 246 STKLKKERKK----RITKVTNTHIENFNPN 265

[Close]
BLAST of Cp4.1LG14g02310 vs. Swiss-Prot
Match: T2EB_SCHPO (Transcription initiation factor IIE subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tfa2 PE=1 SV=2)

HSP 1 Score: 73.9 bits (180), Expect = 3.0e-12
Identity = 69/240 (28.75%), Postives = 123/240 (51.25%), Query Frame = 1 

Query: 41  AASRPPAPAIKFSNDTERLQHINSIRKSPVG----AQIKRVIDLLLETRQAFTPEQINES 100
           AAS P + ++K       L + +    S VG    +Q+   ++ L E  +  T E+I  +
Sbjct: 47  AASSPGSYSLKKKRSKTSLVY-SQPADSGVGTHYLSQLHYAVEYLKERNEPKTAEEI--A 106

Query: 101 CYVDINSNKAVFDSLRNNPKVHYDGRR--FSYKSKHDLKDKNQLLYLI--RKFPEGIAVI 160
            Y+       + + L+ N +++YD R   F++K  H+++    LL  +  +K   G+++ 
Sbjct: 107 SYLSTPLTPMLLNLLKKNNRIYYDERNETFTFKPLHNIRSGAGLLAYLDSQKTHVGMSIK 166

Query: 161 DLKDSYPSVMEDLQALKASGQVWLL-SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIEL 220
           +L+D +P+V  +L+ L+  G+V LL +  D    + + ND      VD + +Q++ EI +
Sbjct: 167 ELRDGWPNVTVELEELEKQGEVLLLRTRKDGVPKMVWRNDKSCDCHVDKEFQQVWHEIPI 226

Query: 221 PRDMLDVEKDLQKNGMKPAT---NTAKRRANAQNVASSKPKPKKKKQEISKRTKLTNAHL 269
           P   LD+  +L K G+KP +   +T KR  + Q      PK KK K   ++R K+TN HL
Sbjct: 227 P-PTLDLASELGKYGLKPTSVDPSTVKRAGHNQT-----PKQKKPK---TRRGKITNTHL 274

[Close]
BLAST of Cp4.1LG14g02310 vs. Swiss-Prot
Match: T2EB_BOVIN (General transcription factor IIE subunit 2 OS=Bos taurus GN=GTF2E2 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.6e-08
Identity = 52/197 (26.40%), Postives = 100/197 (50.76%), Query Frame = 1 

Query: 83  ETRQAFTPEQINESCYVDINSNKAVF---DSLRNNPKVHYDGRRFSYKSKHDLKDKNQLL 142
           +T      E ++E+ ++DI   +  +   ++L NNPK+     ++++K K++LKDK  LL
Sbjct: 91  DTHPLTLEEILDETQHLDIGLKQKQWLMSEALVNNPKIEVVDGKYAFKPKYNLKDKKALL 150

Query: 143 YLIRKFPE-GIAVIDLKDSYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIKV 202
            L+ +  + G+  I L+D    +    +A+KA G   L  N   ++ I + ND   Q  V
Sbjct: 151 RLLDQHDQRGLGGILLEDIEEGLPNSQKAVKALGDQILFVNRPDKKKILFFNDKSCQFSV 210

Query: 203 DDDLKQLFREIEL-PRDMLDVEKDLQKNGMKPATNTAKRRANAQNVASSKPKPKKKKQEI 262
           D++ ++L+R + +   D   +E+ L++ G+    ++  ++  A      KP  +KK    
Sbjct: 211 DEEFQKLWRSVTVDSMDEEKIEEYLKRQGISSMQDSGPKKV-APIQRRKKPASQKK---- 270

Query: 263 SKRTKLTNAHLPELFKN 275
            +R K  N HL  + K+
Sbjct: 271 -RRFKTHNEHLAGVLKD 281

[Close]
BLAST of Cp4.1LG14g02310 vs. Swiss-Prot
Match: T2EB_MOUSE (General transcription factor IIE subunit 2 OS=Mus musculus GN=Gtf2e2 PE=1 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 2.9e-07
Identity = 51/197 (25.89%), Postives = 102/197 (51.78%), Query Frame = 1 

Query: 83  ETRQAFTPEQINESCYVDINSNKAVF---DSLRNNPKVHYDGRRFSYKSKHDLKDKNQLL 142
           +T      E ++E+ ++DI   +  +   ++L NNPK+     ++++K K++LKDK  LL
Sbjct: 94  DTHPLTLEEILDETQHLDIGLKQKQWLMTEALVNNPKIEVVDGKYAFKPKYNLKDKKALL 153

Query: 143 YLIRKFPE-GIAVIDLKDSYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIKV 202
            L+    + G+  I L+D    +    +A+KA G   L  +   ++ I + ND   Q  V
Sbjct: 154 RLLDNHDQRGLGGILLEDIEEGLPNSQKAVKALGDQILFVSRPDKKKILFFNDKSCQFSV 213

Query: 203 DDDLKQLFREIEL-PRDMLDVEKDLQKNGMKPATNTAKRRANAQNVASSKPKPKKKKQEI 262
           D++ ++L+R + +   D   +E+ L++ G+     ++ + +  + VAS + + K   Q+ 
Sbjct: 214 DEEFQKLWRSVTVDSMDEEKIEEYLKRQGI-----SSMQESGPKKVASIQRRKKPASQK- 273

Query: 263 SKRTKLTNAHLPELFKN 275
            +R K  N HL  + K+
Sbjct: 274 KRRFKTHNEHLAGVLKD 284

[Close]
BLAST of Cp4.1LG14g02310 vs. Swiss-Prot
Match: T2EB_HUMAN (Transcription initiation factor IIE subunit beta OS=Homo sapiens GN=GTF2E2 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.8e-07
Identity = 50/197 (25.38%), Postives = 100/197 (50.76%), Query Frame = 1 

Query: 83  ETRQAFTPEQINESCYVDINSNKAVF---DSLRNNPKVHYDGRRFSYKSKHDLKDKNQLL 142
           +T      E ++E+ ++DI   +  +   ++L NNPK+     ++++K K++++DK  LL
Sbjct: 93  DTHPLTLDEILDETQHLDIGLKQKQWLMTEALVNNPKIEVIDGKYAFKPKYNVRDKKALL 152

Query: 143 YLIRKFPE-GIAVIDLKDSYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIKV 202
            L+ +  + G+  I L+D   ++    +A+KA G   L  N   ++ I + ND   Q  V
Sbjct: 153 RLLDQHDQRGLGGILLEDIEEALPNSQKAVKALGDQILFVNRPDKKKILFFNDKSCQFSV 212

Query: 203 DDDLKQLFREIEL-PRDMLDVEKDLQKNGMKPATNTAKRRANAQNVASSKPKPKKKKQEI 262
           D++ ++L+R + +   D   +E+ L++ G+     +  ++  A      KP  +KK    
Sbjct: 213 DEEFQKLWRSVTVDSMDEEKIEEYLKRQGISSMQESGPKKV-APIQRRKKPASQKK---- 272

Query: 263 SKRTKLTNAHLPELFKN 275
            +R K  N HL  + K+
Sbjct: 273 -RRFKTHNEHLAGVLKD 283

[Close]
BLAST of Cp4.1LG14g02310 vs. TrEMBL
Match: A0A0A0KWU5_CUCSA (Transcription initiation factor IIE subunit beta OS=Cucumis sativus GN=Csa_4G049080 PE=3 SV=1)

HSP 1 Score: 501.9 bits (1291), Expect = 4.9e-139
Identity = 260/277 (93.86%), Postives = 273/277 (98.56%), Query Frame = 1 

Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTT-TTPRFTPAPAAS--RPPAPAIKFSNDTE 60
           MALQE+LDRFK+QQERCQ+TLSGIAASK+ + +TP+FTPAPAAS  RPPAPA+KFSNDTE
Sbjct: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTE 60

Query: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKV 120
           RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINE+CYVDINSNKAV+DSLRNNPKV
Sbjct: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV 120

Query: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLL 180
           HYDGRRFSYKSKHDLKDKNQLLYL+RKFPEGIAVIDLKD+YPSVMEDLQALKASGQVWLL
Sbjct: 121 HYDGRRFSYKSKHDLKDKNQLLYLVRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL 180

Query: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240
           SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR
Sbjct: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240

Query: 241 ANAQNVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 275
           ANAQ+VASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Sbjct: 241 ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 277

[Close]
BLAST of Cp4.1LG14g02310 vs. TrEMBL
Match: B9GKK9_POPTR (Transcription initiation factor IIE subunit beta OS=Populus trichocarpa GN=POPTR_0001s09040g PE=3 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 4.3e-119
Identity = 232/281 (82.56%), Postives = 250/281 (88.97%), Query Frame = 1 

Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKT-----TTTTPRFTPAPAAS-RPPAPAIKFSN 60
           MALQE+LDRFK+QQE+CQ+TL+ IA S+      T  T    PAP+ S R PAPA+KFSN
Sbjct: 1   MALQEQLDRFKKQQEKCQSTLTSIAKSRPSKSSLTQKTVAVAPAPSTSARTPAPAVKFSN 60

Query: 61  DTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNN 120
           DTERLQHINSIRK+P GAQIKRVIDLLLETRQAFTPEQIN+ CYVD+NSNKAVFDSLRNN
Sbjct: 61  DTERLQHINSIRKAPAGAQIKRVIDLLLETRQAFTPEQINDHCYVDMNSNKAVFDSLRNN 120

Query: 121 PKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQV 180
           PKVHYDG+RFSYKSKHDLKDK+QLL LIRKFPEGIAVIDLKDSYPSVM+DLQALKA GQ+
Sbjct: 121 PKVHYDGKRFSYKSKHDLKDKSQLLVLIRKFPEGIAVIDLKDSYPSVMDDLQALKAVGQI 180

Query: 181 WLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTA 240
           WLLSNFDSQEDIAYPNDPR+ IKVDDDLKQLFR IELPRDMLD+EKDLQKNGMKPATNTA
Sbjct: 181 WLLSNFDSQEDIAYPNDPRMVIKVDDDLKQLFRGIELPRDMLDIEKDLQKNGMKPATNTA 240

Query: 241 KRRANAQ-NVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 275
           KRRA AQ    S+K K KKKK EISKRTKLTNAHLPELFKN
Sbjct: 241 KRRAAAQVQGISTKQKAKKKKHEISKRTKLTNAHLPELFKN 281

[Close]
BLAST of Cp4.1LG14g02310 vs. TrEMBL
Match: D7TW30_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g03930 PE=4 SV=1)

HSP 1 Score: 434.9 bits (1117), Expect = 7.4e-119
Identity = 228/278 (82.01%), Postives = 251/278 (90.29%), Query Frame = 1 

Query: 1   MALQEKLDRFKRQQERCQTTLSGIAA---SKTTTTTPRFTPAPAASRPPAPAIKFSNDTE 60
           MALQE L +FK+QQE+CQ+TL+ IAA   S   T   +FTPA A ++PP PA+KFSNDTE
Sbjct: 1   MALQESLAKFKKQQEKCQSTLTSIAAKAGSSKPTVPQKFTPA-APTKPPTPAVKFSNDTE 60

Query: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKV 120
           RLQHINSIRK+PVGAQIKRVIDLLLETRQAFTPEQINE+CYVD N+NKAVFDSLRNNPKV
Sbjct: 61  RLQHINSIRKAPVGAQIKRVIDLLLETRQAFTPEQINEACYVDTNANKAVFDSLRNNPKV 120

Query: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLL 180
            YDG+RF+YKSKHDLKD++QLL L+RKFPEGIAVIDLKDSYPSVMEDLQALKA+GQVWLL
Sbjct: 121 SYDGKRFAYKSKHDLKDRSQLLVLVRKFPEGIAVIDLKDSYPSVMEDLQALKAAGQVWLL 180

Query: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240
           SNFDSQEDIAYPNDPR+ IKVDDDLKQ FR IELPRDMLD+EKDLQKNGMKPATNTAKRR
Sbjct: 181 SNFDSQEDIAYPNDPRVPIKVDDDLKQFFRTIELPRDMLDIEKDLQKNGMKPATNTAKRR 240

Query: 241 ANAQ-NVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 275
           A AQ +  +SK KPKKKK EISKRTKLTNAHLPELF+N
Sbjct: 241 AMAQVHGIASKSKPKKKKHEISKRTKLTNAHLPELFQN 277

[Close]
BLAST of Cp4.1LG14g02310 vs. TrEMBL
Match: W9QS39_9ROSA (Transcription initiation factor IIE subunit beta OS=Morus notabilis GN=L484_027256 PE=3 SV=1)

HSP 1 Score: 431.8 bits (1109), Expect = 6.3e-118
Identity = 224/277 (80.87%), Postives = 247/277 (89.17%), Query Frame = 1 

Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPA--PAASRPPAPAIKFSNDTER 60
           MALQEKL++FK+QQE CQ+ L+ IAAS     T + TPA  PA S+PP PA+KFS DTER
Sbjct: 1   MALQEKLEKFKKQQESCQSILTSIAASNKARPTQKVTPAMPPAISKPPPPAVKFSTDTER 60

Query: 61  LQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVH 120
           LQHINSIRKSP GAQIKRVIDLLLETRQA TPEQINE+CYVD N+NK VFDSLR NPKV+
Sbjct: 61  LQHINSIRKSPAGAQIKRVIDLLLETRQALTPEQINEACYVDTNANKTVFDSLRKNPKVN 120

Query: 121 YDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLS 180
           YDG+RFSYKSKHDLKDK+QLLYL+RKFPEGIAVIDLKD+YP+VMEDLQ+LKA+GQ+WLLS
Sbjct: 121 YDGKRFSYKSKHDLKDKSQLLYLVRKFPEGIAVIDLKDAYPTVMEDLQSLKAAGQIWLLS 180

Query: 181 NFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRA 240
           N DSQEDIAYPNDPR+ IKVDDDLKQLFR IELPRDMLD+EKDLQKNGMKPATNTA+RRA
Sbjct: 181 NLDSQEDIAYPNDPRVPIKVDDDLKQLFRGIELPRDMLDIEKDLQKNGMKPATNTAQRRA 240

Query: 241 NAQ-NVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 275
            AQ    SSKPK KKKK EISKRTKLTNAHLPELF+N
Sbjct: 241 MAQVQGISSKPKTKKKKHEISKRTKLTNAHLPELFQN 277

[Close]
BLAST of Cp4.1LG14g02310 vs. TrEMBL
Match: A0A166FP58_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_000683 PE=4 SV=1)

HSP 1 Score: 426.4 bits (1095), Expect = 2.6e-116
Identity = 224/277 (80.87%), Postives = 250/277 (90.25%), Query Frame = 1 

Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTP--APAASRPPAPAIKFSNDTER 60
           MAL+E LD+FK+QQE CQTTLS I AS  + +TPR TP   PA ++ PAPA+KFS+DTER
Sbjct: 1   MALKESLDKFKKQQEMCQTTLSSIKAS--SKSTPRVTPYNTPANAKSPAPAVKFSSDTER 60

Query: 61  LQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVH 120
           LQHINSIRK+PVGAQIKRVI+LLLETRQAFT EQINE+CYVD+ +NKAVFDSL NN KV+
Sbjct: 61  LQHINSIRKAPVGAQIKRVINLLLETRQAFTAEQINEACYVDVKANKAVFDSLSNNLKVY 120

Query: 121 YDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLS 180
           YDGRRFSYKSKHDLKDK QLL LIRKFPEGIAVIDLKD+YPSVM+DLQALKA+G++WLLS
Sbjct: 121 YDGRRFSYKSKHDLKDKGQLLKLIRKFPEGIAVIDLKDAYPSVMDDLQALKAAGEIWLLS 180

Query: 181 NFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRA 240
           NFDSQEDIAYPNDPR+ IKVDDDLKQLFR IELPRDM+D+EKDLQKNGMKPATNTAKRRA
Sbjct: 181 NFDSQEDIAYPNDPRVPIKVDDDLKQLFRGIELPRDMIDIEKDLQKNGMKPATNTAKRRA 240

Query: 241 NAQ-NVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 275
            AQ +  S+KPK KKKK EISKRTKLTN+HLPELFKN
Sbjct: 241 QAQVHGISNKPKQKKKKHEISKRTKLTNSHLPELFKN 275

[Close]
BLAST of Cp4.1LG14g02310 vs. TAIR10
Match: AT4G20330.1 (AT4G20330.1 Transcription initiation factor TFIIE, beta subunit)

HSP 1 Score: 351.3 bits (900), Expect = 5.4e-97
Identity = 192/280 (68.57%), Postives = 234/280 (83.57%), Query Frame = 1 

Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFT-PAPAA---SRPPAPAIKFSNDT 60
           MAL+E+LD+F +QQ +CQ+TLS IA+S+  T++ R   P PAA    +P A  +KFS+DT
Sbjct: 1   MALKEQLDKFNKQQVKCQSTLSSIASSRERTSSSRQNVPLPAAITQKKPDAAPVKFSSDT 60

Query: 61  ERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPK 120
           ERLQ+IN+IRK+PVGAQIKRVIDLL E R A TPEQINE C+VD+++NKAVFDSLR NPK
Sbjct: 61  ERLQNINNIRKAPVGAQIKRVIDLLYERRLALTPEQINEWCHVDMHANKAVFDSLRKNPK 120

Query: 121 VHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWL 180
            HYDGRRFSYK+ HD+ DKNQLL L+RK+ +GIAV+DLKD+YP+VMEDL+AL ASG ++L
Sbjct: 121 AHYDGRRFSYKATHDVNDKNQLLSLVRKYLDGIAVVDLKDAYPNVMEDLKALSASGDIYL 180

Query: 181 LSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKR 240
           LSN  SQEDIAYPND + +IKVDD+ K LFR+I +P DMLDVEK+L K G+KPATNTA+R
Sbjct: 181 LSN--SQEDIAYPNDFKCEIKVDDEFKALFRDINIPNDMLDVEKELLKIGLKPATNTAER 240

Query: 241 RANAQ-NVASSKPK-PKKKKQEISKRTKLTNAHLPELFKN 275
           RA AQ +  S+KPK  KKKKQEISKRTKLTNAHLPELF+N
Sbjct: 241 RAAAQTHGISNKPKDKKKKKQEISKRTKLTNAHLPELFQN 278

[Close]
BLAST of Cp4.1LG14g02310 vs. TAIR10
Match: AT4G21010.1 (AT4G21010.1 Transcription initiation factor TFIIE, beta subunit)

HSP 1 Score: 288.1 bits (736), Expect = 5.6e-78
Identity = 161/277 (58.12%), Postives = 214/277 (77.26%), Query Frame = 1 

Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQ 60
           MAL+E+LD+F +QQE+CQ+TLS I++S+T  +      A  + +P     KFS +T++LQ
Sbjct: 1   MALREQLDKFNKQQEKCQSTLSSISSSRTALSRSYVPAATTSQKPNVFRGKFSENTKQLQ 60

Query: 61  HINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVHYD 120
           HI +IR S VGAQ+K VIDLL +TR A+T EQINE+CYVD+++NKAVFDSLR NPKVHYD
Sbjct: 61  HITNIRNSAVGAQMKIVIDLLFKTRLAYTAEQINEACYVDMHNNKAVFDSLRKNPKVHYD 120

Query: 121 GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQV-WLLSN 180
           GRRFSYK+ H++KDK QLL  + K  + I V DLKD+YP+VMEDL++LK+SG++ WLLSN
Sbjct: 121 GRRFSYKATHNIKDKKQLLSFVNKSDKVIDVSDLKDAYPNVMEDLKSLKSSGEIFWLLSN 180

Query: 181 FDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRAN 240
            DS+E   Y N+     K+DD+LK LFR+I +P DML+VEK+L K G+KPATN A+RRA 
Sbjct: 181 TDSKEGTVYRNNMEYP-KIDDELKALFRDI-IPSDMLEVEKELLKIGLKPATNIAERRAA 240

Query: 241 AQ-NVASSKPK-PKKKKQEISKRTKLTNAHLPELFKN 275
            Q +  S+KPK  KKKK+EI+ RTKLTN+H+ ELF++
Sbjct: 241 EQLHGVSNKPKDKKKKKKEITNRTKLTNSHMLELFQS 275

[Close]
BLAST of Cp4.1LG14g02310 vs. NCBI nr
Match: gi|778690905|ref|XP_011653191.1| (PREDICTED: general transcription factor IIE subunit 2-like [Cucumis sativus])

HSP 1 Score: 501.9 bits (1291), Expect = 7.1e-139
Identity = 260/277 (93.86%), Postives = 273/277 (98.56%), Query Frame = 1 

Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTT-TTPRFTPAPAAS--RPPAPAIKFSNDTE 60
           MALQE+LDRFK+QQERCQ+TLSGIAASK+ + +TP+FTPAPAAS  RPPAPA+KFSNDTE
Sbjct: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTE 60

Query: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKV 120
           RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINE+CYVDINSNKAV+DSLRNNPKV
Sbjct: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV 120

Query: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLL 180
           HYDGRRFSYKSKHDLKDKNQLLYL+RKFPEGIAVIDLKD+YPSVMEDLQALKASGQVWLL
Sbjct: 121 HYDGRRFSYKSKHDLKDKNQLLYLVRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL 180

Query: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240
           SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR
Sbjct: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240

Query: 241 ANAQNVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 275
           ANAQ+VASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Sbjct: 241 ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 277

[Close]
BLAST of Cp4.1LG14g02310 vs. NCBI nr
Match: gi|659102216|ref|XP_008452012.1| (PREDICTED: general transcription factor IIE subunit 2-like [Cucumis melo])

HSP 1 Score: 498.4 bits (1282), Expect = 7.8e-138
Identity = 260/277 (93.86%), Postives = 272/277 (98.19%), Query Frame = 1 

Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTT-TTPRFTPAPAAS--RPPAPAIKFSNDTE 60
           MALQE+LDRFK+QQERCQ+TLSGIAASK+ + +TP+FTPAPAAS  RP APA+KFSNDTE
Sbjct: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPLAPAVKFSNDTE 60

Query: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKV 120
           RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINE+CYVDINSNKAV+DSLRNNPKV
Sbjct: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV 120

Query: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLL 180
           HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKD+YPSVMEDLQALKASGQVWLL
Sbjct: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL 180

Query: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240
           SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR
Sbjct: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240

Query: 241 ANAQNVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 275
           ANAQ+VASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Sbjct: 241 ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 277

[Close]
BLAST of Cp4.1LG14g02310 vs. NCBI nr
Match: gi|224058567|ref|XP_002299546.1| (transcription initiation factor-related family protein [Populus trichocarpa])

HSP 1 Score: 435.6 bits (1119), Expect = 6.2e-119
Identity = 232/281 (82.56%), Postives = 250/281 (88.97%), Query Frame = 1 

Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKT-----TTTTPRFTPAPAAS-RPPAPAIKFSN 60
           MALQE+LDRFK+QQE+CQ+TL+ IA S+      T  T    PAP+ S R PAPA+KFSN
Sbjct: 1   MALQEQLDRFKKQQEKCQSTLTSIAKSRPSKSSLTQKTVAVAPAPSTSARTPAPAVKFSN 60

Query: 61  DTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNN 120
           DTERLQHINSIRK+P GAQIKRVIDLLLETRQAFTPEQIN+ CYVD+NSNKAVFDSLRNN
Sbjct: 61  DTERLQHINSIRKAPAGAQIKRVIDLLLETRQAFTPEQINDHCYVDMNSNKAVFDSLRNN 120

Query: 121 PKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQV 180
           PKVHYDG+RFSYKSKHDLKDK+QLL LIRKFPEGIAVIDLKDSYPSVM+DLQALKA GQ+
Sbjct: 121 PKVHYDGKRFSYKSKHDLKDKSQLLVLIRKFPEGIAVIDLKDSYPSVMDDLQALKAVGQI 180

Query: 181 WLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTA 240
           WLLSNFDSQEDIAYPNDPR+ IKVDDDLKQLFR IELPRDMLD+EKDLQKNGMKPATNTA
Sbjct: 181 WLLSNFDSQEDIAYPNDPRMVIKVDDDLKQLFRGIELPRDMLDIEKDLQKNGMKPATNTA 240

Query: 241 KRRANAQ-NVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 275
           KRRA AQ    S+K K KKKK EISKRTKLTNAHLPELFKN
Sbjct: 241 KRRAAAQVQGISTKQKAKKKKHEISKRTKLTNAHLPELFKN 281

[Close]
BLAST of Cp4.1LG14g02310 vs. NCBI nr
Match: gi|225426874|ref|XP_002283557.1| (PREDICTED: general transcription factor IIE subunit 2 [Vitis vinifera])

HSP 1 Score: 434.9 bits (1117), Expect = 1.1e-118
Identity = 228/278 (82.01%), Postives = 251/278 (90.29%), Query Frame = 1 

Query: 1   MALQEKLDRFKRQQERCQTTLSGIAA---SKTTTTTPRFTPAPAASRPPAPAIKFSNDTE 60
           MALQE L +FK+QQE+CQ+TL+ IAA   S   T   +FTPA A ++PP PA+KFSNDTE
Sbjct: 1   MALQESLAKFKKQQEKCQSTLTSIAAKAGSSKPTVPQKFTPA-APTKPPTPAVKFSNDTE 60

Query: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKV 120
           RLQHINSIRK+PVGAQIKRVIDLLLETRQAFTPEQINE+CYVD N+NKAVFDSLRNNPKV
Sbjct: 61  RLQHINSIRKAPVGAQIKRVIDLLLETRQAFTPEQINEACYVDTNANKAVFDSLRNNPKV 120

Query: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLL 180
            YDG+RF+YKSKHDLKD++QLL L+RKFPEGIAVIDLKDSYPSVMEDLQALKA+GQVWLL
Sbjct: 121 SYDGKRFAYKSKHDLKDRSQLLVLVRKFPEGIAVIDLKDSYPSVMEDLQALKAAGQVWLL 180

Query: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240
           SNFDSQEDIAYPNDPR+ IKVDDDLKQ FR IELPRDMLD+EKDLQKNGMKPATNTAKRR
Sbjct: 181 SNFDSQEDIAYPNDPRVPIKVDDDLKQFFRTIELPRDMLDIEKDLQKNGMKPATNTAKRR 240

Query: 241 ANAQ-NVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 275
           A AQ +  +SK KPKKKK EISKRTKLTNAHLPELF+N
Sbjct: 241 AMAQVHGIASKSKPKKKKHEISKRTKLTNAHLPELFQN 277

[Close]
BLAST of Cp4.1LG14g02310 vs. NCBI nr
Match: gi|743852303|ref|XP_011029222.1| (PREDICTED: general transcription factor IIE subunit 2 [Populus euphratica])

HSP 1 Score: 432.2 bits (1110), Expect = 6.9e-118
Identity = 229/281 (81.49%), Postives = 250/281 (88.97%), Query Frame = 1 

Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKT-----TTTTPRFTPAPAAS-RPPAPAIKFSN 60
           MALQE+LDRFK+QQE+CQ+TL+ IA S+      T  T    P+P+ S R PAPA+KFSN
Sbjct: 1   MALQEQLDRFKKQQEKCQSTLTSIAKSRPSKSSLTQKTVAVAPSPSTSARTPAPAVKFSN 60

Query: 61  DTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNN 120
           DTERLQHINSIRK+P GAQIKRVIDLLLETRQAFTPEQIN+ CYVD+NSNKAVFDSLRNN
Sbjct: 61  DTERLQHINSIRKAPAGAQIKRVIDLLLETRQAFTPEQINDHCYVDMNSNKAVFDSLRNN 120

Query: 121 PKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQV 180
           PKVHYDG+RFSYKSKHDLKDK+QLL LIRKFPEGIAVIDLKD+YP+VM+DLQALKA GQ+
Sbjct: 121 PKVHYDGKRFSYKSKHDLKDKSQLLVLIRKFPEGIAVIDLKDAYPNVMDDLQALKAVGQI 180

Query: 181 WLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTA 240
           WLLSNFDSQEDIAYPNDPR+ IKVDDDLKQLFR IELPRDMLD+EKDLQKNGMKPATNTA
Sbjct: 181 WLLSNFDSQEDIAYPNDPRMVIKVDDDLKQLFRGIELPRDMLDIEKDLQKNGMKPATNTA 240

Query: 241 KRRANAQ-NVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 275
           KRRA AQ    S+K K KKKK EISKRTKLTNAHLPELFKN
Sbjct: 241 KRRAAAQVQGISTKQKAKKKKHEISKRTKLTNAHLPELFKN 281

The following BLAST results are available for this feature:
BLAST of Cp4.1LG14g02310 vs. Swiss-Prot
Match NameE-valueIdentityDescription
T2EB_DICDI2.4e-1426.30General transcription factor IIE subunit 2 OS=Dictyostelium discoideum GN=gtf2e2... [more]
T2EB_SCHPO3.0e-1228.75Transcription initiation factor IIE subunit beta OS=Schizosaccharomyces pombe (s... [more]
T2EB_BOVIN7.6e-0826.40General transcription factor IIE subunit 2 OS=Bos taurus GN=GTF2E2 PE=2 SV=1[more]
T2EB_MOUSE2.9e-0725.89General transcription factor IIE subunit 2 OS=Mus musculus GN=Gtf2e2 PE=1 SV=2[more]
T2EB_HUMAN3.8e-0725.38Transcription initiation factor IIE subunit beta OS=Homo sapiens GN=GTF2E2 PE=1 ... [more]
BLAST of Cp4.1LG14g02310 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWU5_CUCSA4.9e-13993.86Transcription initiation factor IIE subunit beta OS=Cucumis sativus GN=Csa_4G049... [more]
B9GKK9_POPTR4.3e-11982.56Transcription initiation factor IIE subunit beta OS=Populus trichocarpa GN=POPTR... [more]
D7TW30_VITVI7.4e-11982.01Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g03930 PE=4 SV=... [more]
W9QS39_9ROSA6.3e-11880.87Transcription initiation factor IIE subunit beta OS=Morus notabilis GN=L484_0272... [more]
A0A166FP58_DAUCA2.6e-11680.87Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_000683 PE=4 SV=1[more]
BLAST of Cp4.1LG14g02310 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G20330.15.4e-9768.57 Transcription initiation factor TFIIE, beta subunit[more]
AT4G21010.15.6e-7858.12 Transcription initiation factor TFIIE, beta subunit[more]
BLAST of Cp4.1LG14g02310 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778690905|ref|XP_011653191.1|7.1e-13993.86PREDICTED: general transcription factor IIE subunit 2-like [Cucumis sativus][more]
gi|659102216|ref|XP_008452012.1|7.8e-13893.86PREDICTED: general transcription factor IIE subunit 2-like [Cucumis melo][more]
gi|224058567|ref|XP_002299546.1|6.2e-11982.56transcription initiation factor-related family protein [Populus trichocarpa][more]
gi|225426874|ref|XP_002283557.1|1.1e-11882.01PREDICTED: general transcription factor IIE subunit 2 [Vitis vinifera][more]
gi|743852303|ref|XP_011029222.1|6.9e-11881.49PREDICTED: general transcription factor IIE subunit 2 [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006367transcription initiation from RNA polymerase II promoter
Vocabulary: INTERPRO
TermDefinition
IPR003166TFIIE_bsu_DNA-bd
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0006367 transcription initiation from RNA polymerase II promoter
biological_process GO:0034645 cellular macromolecule biosynthetic process
biological_process GO:0010467 gene expression
biological_process GO:0006413 translational initiation
biological_process GO:0008150 biological_process
cellular_component GO:0005840 ribosome
cellular_component GO:0005673 transcription factor TFIIE complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g02310.1Cp4.1LG14g02310.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003166Transcription factor TFIIE beta subunit, DNA-binding domainPFAMPF02186TFIIE_betacoord: 72..131
score: 6.
IPR003166Transcription factor TFIIE beta subunit, DNA-binding domainPROFILEPS51351TFIIE_BETA_Ccoord: 58..133
score: 1
NoneNo IPR availablePANTHERPTHR12716TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNITcoord: 1..274
score: 8.3E
NoneNo IPR availablePANTHERPTHR12716:SF8TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT BETAcoord: 1..274
score: 8.3E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG14g02310Cucsa.106900Cucumber (Gy14) v1cgycpeB0237
Cp4.1LG14g02310CmaCh16G005860Cucurbita maxima (Rimu)cmacpeB344
Cp4.1LG14g02310CmaCh04G007300Cucurbita maxima (Rimu)cmacpeB714
Cp4.1LG14g02310CmoCh04G007750Cucurbita moschata (Rifu)cmocpeB667
Cp4.1LG14g02310CmoCh16G006350Cucurbita moschata (Rifu)cmocpeB307
Cp4.1LG14g02310Cla014643Watermelon (97103) v1cpewmB218
Cp4.1LG14g02310Csa4G049080Cucumber (Chinese Long) v2cpecuB221
Cp4.1LG14g02310MELO3C016344Melon (DHL92) v3.5.1cpemeB196
Cp4.1LG14g02310ClCG07G007970Watermelon (Charleston Gray)cpewcgB210
Cp4.1LG14g02310CSPI04G05880Wild cucumber (PI 183967)cpecpiB223
Cp4.1LG14g02310Lsi07G008980Bottle gourd (USVL1VR-Ls)cpelsiB187
Cp4.1LG14g02310MELO3C016344.2Melon (DHL92) v3.6.1cpemedB238
Cp4.1LG14g02310CsaV3_4G006050Cucumber (Chinese Long) v3cpecucB0266
Cp4.1LG14g02310Bhi01G001793Wax gourdcpewgoB0289
Cp4.1LG14g02310CsGy4G005740Cucumber (Gy14) v2cgybcpeB487
Cp4.1LG14g02310Carg14126Silver-seed gourdcarcpeB1301
Cp4.1LG14g02310Carg22211Silver-seed gourdcarcpeB0838
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG14g02310Cucumber (Chinese Long) v3cpecucB0254
Cp4.1LG14g02310Cucumber (Chinese Long) v3cpecucB0277
Cp4.1LG14g02310Cucurbita pepo (Zucchini)cpecpeB196
Cp4.1LG14g02310Cucurbita pepo (Zucchini)cpecpeB233
Cp4.1LG14g02310Watermelon (Charleston Gray)cpewcgB203
Cp4.1LG14g02310Watermelon (97103) v1cpewmB231
Cp4.1LG14g02310Cucumber (Gy14) v2cgybcpeB324
Cp4.1LG14g02310Cucumber (Gy14) v2cgybcpeB619
Cp4.1LG14g02310Melon (DHL92) v3.6.1cpemedB217
Cp4.1LG14g02310Melon (DHL92) v3.6.1cpemedB218
Cp4.1LG14g02310Melon (DHL92) v3.6.1cpemedB230