Carg22211 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22211
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transcription initiation factor IIE subunit beta
Location	Cucurbita_argyrosperma_scaffold_174 : 79377 .. 84689 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTGCAAGAAAAACTAGATAGGTTTAAGAGACAACAAGAAAGATGCCAGACTACCTTGTCTGGCATTGCTGCATCCAAGACTACTACTACTACACCCAGGTTTACGCCTGCTCCAGCCGCTTCAAGACCTCCGGCTCCTGCTATAAAATTTTCAAATGACACTGAGAGACTTCAACACATTAACAGCATAAGGAAATCCCCAGTCGGGGCTCAGATCAAGAGGGTTATTGACCTGCTTCTGGAGGTTCACACCTATCGCCCATCTTTCTTATTTCCCCCTTTTTGTTTTCTTACTTATACCTTATCTGCTTTACCTGGACTATTGTATTTGATCGAATTCATTGGAAGGCTTTGTATAGGGTAGGATTTAGTGCATATTTTTGGGAGTGATTTTAAAAGGGCTAAAATTACTTTTGCCATGTTCATCAAAAGGACTCTAAAAACATGTTTTTTATAATTCAAAATAAATTTAATGTTTGATTTTGTACGAATATGTAATTTTCATAACATCAAAATTAATTTTCAAGTATTAAAAACATGTTTTTAGTGTTTTTTTTTTTTTTTAAATATAAGAAGTGTTTTTAACTATCTCAAAGTCACTCCCAAACATGTCATGTTAATAGACACAGATAGATTCAAAATGAGCAGACCTTATGCTGAAATTTATCATATTTCTTGTTTTTAGTCTGTCCAAATTTTGCTAAATTCGATACATGTCTTTCTGAATGATCAATTTTTGAACCGGGAGATTTGGCTGGTTTGAAAACTTTTTCAGGTAGTGAAACTTGTGATTGCCCGTTAAGATGGCAAGAGGAGCTAGGATCCTCTTTAATGGCTTTTATGTGGTCGTTTTCCTTACTTTGTGTTGGTGAAAAAAAATGCATTTGAACATGCCAATCCCCTTCCCGTACTCTCTGGTTTGAATTGGCTGTGAAAAAGCTAAAAAAAGTCCTGAAATGCACTCTCTACTGTTAGTTAATTCAAACCTCAGGGGTATGTTACAATCTTACAGCTTGCTTATTGTGCATGTTAACAGACAAGACAAGCCTTTACACCTGAGCAAATCAATGAATCATGTTATGTTGATATAAATTCCAACAAAGCTGTCTTTGATAGTTTGCGGAATAACCCAAAGGTGCACTATGATGGGAGGCGTTTCTCATACAAGGTAATTTAAATTTTCAAGCACCTGTATACTTTGCATGAACTTGTTCTTGTTTGGTTTAAAAGTTTAAACGTTTAAGATGACGTTTTTTCCTCTTTTTTCTGTTTTTGATATATTCAGTCCAAGCATGATCTGAAGGATAAGAATCAACTTCTTTACTTGATTCGGAAATTTCCAGAAGGCATTGCTGTCATTGATCTCAAGGATTCTTATCCAAGCGTTATGGAAGATTTGCAAGTACGTATAATTGAGAATTTTTTTTATATGCGTTCCCCGTTTTAAATTCGAAAAAAGTGAAAATAACATATCACCCTTGGATGACACTCTCCTCATTTGAACTGCTTGGGTAACAACCTTTGTGAAGCTTAATGTACTGACTATTTTGGACATCAAATGTCTTGTGTAAATTTTGAGCTTTTAAGGCTGTGTATTTTCTTTGCACAATAATTGGAATTATAATTAGTTTACAATTCTAATTACTCTGGCGATTAGTGCAAGAGTCCGTTGAGACCTGGATTCTTATTTGTATACGATATTAAACATAGTGTAAATTAAAGTTGTTAAGTTATTAAGTTTTGATTTGTCCAATAAAAGTGGTATTTTGAGAGTTCATGAAAAACAACTATCTTTGGTAGCTGCTGAATGGTGATTTTATGTTACCCAATAGCCTTAAAACGAAAATAGAAGTAAATATTTGTTTACCAAACTAGCTGTGAGGAAAGCCCCCAATGTCCTTCGCTAGTATACCCTTGTGTTTTCTTTCCTCGTTTTTTCTTCTCTTCTCTCCATTCCTCCAGTTCCAGACTGATTTTAGAGAAAGTTCGTTTCTTCCTACAGAAATCTGATTGATGCCTGTATGGCTTGCTAACTATTCATGTCAATATTCTGGGTTCTTGGTCATGTTATACCTCACAAGTCAGCTTGTTTAATTCTCTTCCAGGTTAGACTGTAGTGTCTCCTTGTACACTAGAAGGCTTTGTTCATTCAACAATTCCTGTTTAAGGCTATTGTGAAAATCTTGGCTGGTAGCTTGAAGATTGAAATGAGTCCTTTCTAATACGATTTCTAACACTCAAGGTGCCTTTATAGCCGGTTGGCAAATTTTAGACCAAGTGCTTATAGCTAATGAAGCTATGAGGACCATAGGGAAAGGAAAGAAGAGGGGATTATCTTCAAAATTGATTTTGAGTAAGTTGATGATCATGTGGATTGGGACTTTTTGGACAAAGCTTTAGGGAAGAAAGTTTTTTGGGGTTAAATGGAGAGGTAAAATGTATAATTGTATTAGGTCAGTTAATTTTTTCATTTTTGTCAACGGGAGGCCTAGAGGTAAGATTTCAACAATGAGAGGCCTTAGACAAGGGGGTTCTCTTTCTCCTTTTCTCTTTATCTTGGTGGTGGATGTCTTGTGTAGATGAGTATCGGCTGGTGTGGATAAGGGTGTTTTCAAGAGTTTTAAGGTGGGCAAGGACTTAGTCTATCATTCGCCTCTTTAGTTTGCGGACAGTTATGACCTTCGAGTGGGGATTCGAGGGGTGAATGTAAATTCCTCTGGAAAGCTATATCTTCAAGTCTTCCCTCTTTTTCTCAATTCATTTATTGTTTTGTGGGAGACAAACTTTGGGTGATTTTTCCCTTCATCTCTACCTTCTCTCGGATAAGAAGTTACATTGGGTGGCTTCAGTGTTGTCATCTACTGACCAATCTTCTTTGACTTTTTTGCACTTTCGTCACCCTCTATCAGATAGAGAGGAGGTTGAGGTGATAGATCTTCTTTTTATCCTTCAAGACCGGCCCTGGGAGGAGGGATGTTAGAAATTAGAAGGTGGTCCCTGATCCTAATAGATGATTCTCTTGTCATTCCTTCTTCAACCTTTTATCCTCTCCCCCTGCTTAATCGGCTAATCGGCTGCTCTTGAGGCGATAGTCTTCTCCCCTTTACGGAAGATAAAAGTTACAGAAAATGTTAAGGTTTTTTCTTGGCAGGTTTTATTAGGGCGAGTCAATACCTTAGATTGTGTCCAAAGGCATTTCTCCTTTGCCTTGTTTCCGCAATCGTGCATTCTCTGTAGGAGGGATCATGATGATCCTAGTCACTTGTTGTGGAAGTGCCAGTTCGTGAATTACCATTAGGACCAGTGGCAGAGTTCTTTAGGGGTTATTGGGGCTCGGAATAGGGATGGGTGTTCTTTTTTGAAAGAGGTGGCTTTGCACTTCCCTTTTAGGGAGAAGCGTATAGTATTTTGTCAGGCAAGCTTCCTTGCTATTTTGTGTGATGTTTGGTTGGAGCGTAAGAGTAGAATTTGTAGGGATGTGGGGAAATCTAGAGTGGAGGTTTGGGAGTTGGTGAGCTTTAATGCTTCCATTTGGGCTTCGGTCACTAAACCGTTTTGTAAGTATGATACCGGTCTTGTTTTTTGGGGCTTGTTTTTTGTTCACTCTTGTATTCTTTTATTTTTTTACGTAAGAAAGTTCGGTTTTTTGCCCCCCCCCCCCCACCCCGCGCCGCCCCCCTCTCAAAAAAAAAAAAGAATAAAAGAATAAAAAATCCTTCCCAAAAGTGGTAGAGAATAATGTTATCTATGAGCAGTTAAAATTGAAATCAAAGGATTTAACCCCATGATTTATAATCCTTGTCAAAACTAATGGATTTTCTAACGAGGAGCAAAGTTTTCACTGAAAAACATGAAATAATTCAAAGAGCAAACAAAAGTACAATCCAATAAGAGGAGCTAATTTGAGACCAACCAAACGAAAAAGAGTCCAATCTAAAAGAATAAGGTCTAACAAGAGTTACAACAAGTCTTGGAAACCAATGTCCAAAGGGAAGCATTATTCTTATGGTTGATGCATCTAAACTGTAGTTGAGAATTTTCAGAAATATACTAGAATTGCTTTTGGTATAAAACTTGTACCATTAAGCTAAGAAAAGGTGGTAGGGTCTAAAAATCCATGTCACAACAACTTCAGTTCCTCGAAGTGATCTTGGTAACCAGAATAAAACATTTGAGGCTAGTATGAAGATGAAGAACTTGAAGATAGCATGTTATTGAGCTTGAAGACTTTGGTATGGCATTCAGAGATTCATTATGACTTAAGTTATGTCAACTTCCCAAATAATGTTTGAAAAATCAACAGTACAAGCATTCTTCATGATATTAGTGAAAAAAGATGAACTTTCCTTGCGCTTGTGGATCAGTTTATCAGTTATTGAGAGAAGTAATTATTTTATTTCACTAGTAGATTACTATGGAAGTTCTGTTAGAATTTGGTTCTTTTATTGTAAATATCTACGTCCATACTTATCTGATACGTCACGAGTTTTACTTATAGGTATTGATTTGGAGGTTGTTTCTTGTAAAGTATGTCTATTTGTTTCCATACTTGTTGATCACCAGTTTTTTGGCCTCCCCAACTTTATGAACTTTGTTTTGATGGAACCGTCTTCTTTGCTTATTAATGAATGGAAAGCACATGGATGTACTCTTCTTTGGTTATATAATGAATGGAAAACACAGTCCATGAGCTTTGCATAATCCTTTCCCCTCTTGTTTAGGCCCTAAAAGCCTCAGGCCAGGTTTGGCTTCTCTCAAACTTTGATTCACAAGAAGATATTGCATACCCAAATGACCCTCGAATTCAAATCAAAGTAGACGATGATCTGAAGCAACTGTTTCGGGAAATTGAATTACCTCGTGATATGCTCGATGTCGAAAAGGATCTGCAGAAGAATGGAATGAAGCCTGCTACCAACACTGCAAAGAGGCGAGCCAATGCACAAAATGTGGCGTCCTCGAAACCAAAGCCGAAGAAAAAGAAGCAAGAGATCAGCAAGAGGACCAAGCTCACCAATGCACATCTTCCGGAGCTCTTCAAGAATTAAAGAACCATATGCTCTTATTATACTGTCATCTGTGGGCTGATATGCGTAGTCCAAGGACTCTGTAGATAGCATTCAACCATCCATCCATCCATCCCTACTGTTTGATGTATTGCCTTTTGTGAATGTTCTGCGTTTACTTCAAGTAATTGAATAATTTGAATATAAGAGAGAGAGGTTCATTCAACTAGACATATGACATTACAAGTTGATCATTTGTGCAAACTTCTAAATTCTATAAGTTCAAGTTCATTTTATTTTAG

mRNA sequence

ATGGCGTTGCAAGAAAAACTAGATAGGTTTAAGAGACAACAAGAAAGATGCCAGACTACCTTGTCTGGCATTGCTGCATCCAAGACTACTACTACTACACCCAGGTTTACGCCTGCTCCAGCCGCTTCAAGACCTCCGGCTCCTGCTATAAAATTTTCAAATGACACTGAGAGACTTCAACACATTAACAGCATAAGGAAATCCCCAGTCGGGGCTCAGATCAAGAGGGTTATTGACCTGCTTCTGGAGACAAGACAAGCCTTTACACCTGAGCAAATCAATGAATCATGTTATGTTGATATAAATTCCAACAAAGCTGTCTTTGATAGTTTGCGGAATAACCCAAAGGTGCACTATGATGGGAGGCGTTTCTCATACAAGTCCAAGCATGATCTGAAGGATAAGAATCAACTTCTTTACTTGATTCGGAAATTTCCAGAAGGCATTGCTGTCATTGATCTCAAGGATTCTTATCCAAGCGTTATGGAAGATTTGCAAGCCCTAAAAGCCTCAGGCCAGGTTTGGCTTCTCTCAAACTTTGATTCACAAGAAGATATTGCATACCCAAATGACCCTCGAATTCAAATCAAAGTAGACGATGATCTGAAGCAACTGTTTCGGGAAATTGAATTACCTCGTGATATGCTCGATGTCGAAAAGGATCTGCAGAAGAATGGAATGAAGCCTGCTACCAACACTGCAAAGAGGCGAGCCAATGCACAAAATGTGGCGTCCTCGAAACCAAAGCCGAAGAAAAAGAAGCAAGAGATCAGCAAGAGGACCAAGCTCACCAATGCACATCTTCCGGAGCTCTTCAAGAATTAAAGAACCATATGCTCTTATTATACTGTCATCTGTGGGCTGATATGCGTAGTCCAAGGACTCTGTAGATAGCATTCAACCATCCATCCATCCATCCCTACTGTTTGATGTATTGCCTTTTGTGAATGTTCTGCGTTTACTTCAAGTAATTGAATAATTTGAATATAAGAGAGAGAGGTTCATTCAACTAGACATATGACATTACAAGTTGATCATTTGTGCAAACTTCTAAATTCTATAAGTTCAAGTTCATTTTATTTTAG

Coding sequence (CDS)

ATGGCGTTGCAAGAAAAACTAGATAGGTTTAAGAGACAACAAGAAAGATGCCAGACTACCTTGTCTGGCATTGCTGCATCCAAGACTACTACTACTACACCCAGGTTTACGCCTGCTCCAGCCGCTTCAAGACCTCCGGCTCCTGCTATAAAATTTTCAAATGACACTGAGAGACTTCAACACATTAACAGCATAAGGAAATCCCCAGTCGGGGCTCAGATCAAGAGGGTTATTGACCTGCTTCTGGAGACAAGACAAGCCTTTACACCTGAGCAAATCAATGAATCATGTTATGTTGATATAAATTCCAACAAAGCTGTCTTTGATAGTTTGCGGAATAACCCAAAGGTGCACTATGATGGGAGGCGTTTCTCATACAAGTCCAAGCATGATCTGAAGGATAAGAATCAACTTCTTTACTTGATTCGGAAATTTCCAGAAGGCATTGCTGTCATTGATCTCAAGGATTCTTATCCAAGCGTTATGGAAGATTTGCAAGCCCTAAAAGCCTCAGGCCAGGTTTGGCTTCTCTCAAACTTTGATTCACAAGAAGATATTGCATACCCAAATGACCCTCGAATTCAAATCAAAGTAGACGATGATCTGAAGCAACTGTTTCGGGAAATTGAATTACCTCGTGATATGCTCGATGTCGAAAAGGATCTGCAGAAGAATGGAATGAAGCCTGCTACCAACACTGCAAAGAGGCGAGCCAATGCACAAAATGTGGCGTCCTCGAAACCAAAGCCGAAGAAAAAGAAGCAAGAGATCAGCAAGAGGACCAAGCTCACCAATGCACATCTTCCGGAGCTCTTCAAGAATTAA

Protein sequence

MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQNVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

Homology

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BLAST of Carg22211 vs. NCBI nr
Match: XP_022931511.1 (general transcription factor IIE subunit 2-like [Cucurbita moschata] >XP_023552207.1 general transcription factor IIE subunit 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 523.1 bits (1346), Expect = 5.8e-145
Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 0


Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQ 60
           MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQ
Sbjct: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQ 60

Query: 61  HINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVHYD 120
           HINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVHYD
Sbjct: 61  HINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVHYD 120

Query: 121 GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNF 180
           GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNF
Sbjct: 121 GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNF 180

Query: 181 DSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANA 240
           DSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANA
Sbjct: 181 DSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANA 240

Query: 241 QNVASSKPKXXXXKQEISKRTKLTNAHLPELFKN 275
           QNVASSKPKXXXXKQEISKRTKLTNAHLPELFKN
Sbjct: 241 QNVASSKPKXXXXKQEISKRTKLTNAHLPELFKN 274

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BLAST of Carg22211 vs. NCBI nr
Match: XP_022984812.1 (general transcription factor IIE subunit 2-like [Cucurbita maxima])

HSP 1 Score: 521.9 bits (1343), Expect = 1.3e-144
Identity = 273/274 (99.64%), Postives = 274/274 (100.00%), Query Frame = 0


Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQ 60
           MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQ
Sbjct: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQ 60

Query: 61  HINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVHYD 120
           HINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINE+CYVDINSNKAVFDSLRNNPKVHYD
Sbjct: 61  HINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVFDSLRNNPKVHYD 120

Query: 121 GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNF 180
           GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNF
Sbjct: 121 GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNF 180

Query: 181 DSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANA 240
           DSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANA
Sbjct: 181 DSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANA 240

Query: 241 QNVASSKPKXXXXKQEISKRTKLTNAHLPELFKN 275
           QNVASSKPKXXXXKQEISKRTKLTNAHLPELFKN
Sbjct: 241 QNVASSKPKXXXXKQEISKRTKLTNAHLPELFKN 274

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BLAST of Carg22211 vs. NCBI nr
Match: XP_011653191.1 (PREDICTED: general transcription factor IIE subunit 2-like [Cucumis sativus] >KGN53349.1 hypothetical protein Csa_4G049080 [Cucumis sativus])

HSP 1 Score: 495.4 bits (1274), Expect = 1.3e-136
Identity = 259/277 (93.50%), Postives = 272/277 (98.19%), Query Frame = 0


Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTT-TTPRFTPAPAAS--RPPAPAIKFSNDTE 60
           MALQE+LDRFK+QQERCQ+TLSGIAASK+ + +TP+FTPAPAAS  RPPAPA+KFSNDTE
Sbjct: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTE 60

Query: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKV 120
           RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINE+CYVDINSNKAV+DSLRNNPKV
Sbjct: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV 120

Query: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLL 180
           HYDGRRFSYKSKHDLKDKNQLLYL+RKFPEGIAVIDLKD+YPSVMEDLQALKASGQVWLL
Sbjct: 121 HYDGRRFSYKSKHDLKDKNQLLYLVRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL 180

Query: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240
           SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR
Sbjct: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240

Query: 241 ANAQNVASSKPKXXXXKQEISKRTKLTNAHLPELFKN 275
           ANAQ+VASSKPK XXXKQEISKRTKLTNAHLPELFKN
Sbjct: 241 ANAQHVASSKPKPXXXKQEISKRTKLTNAHLPELFKN 277

[Close]

BLAST of Carg22211 vs. NCBI nr
Match: XP_008452012.1 (PREDICTED: general transcription factor IIE subunit 2-like [Cucumis melo] >XP_008452013.1 PREDICTED: general transcription factor IIE subunit 2-like [Cucumis melo])

HSP 1 Score: 491.9 bits (1265), Expect = 1.4e-135
Identity = 259/277 (93.50%), Postives = 271/277 (97.83%), Query Frame = 0


Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTT-TTPRFTPAPAAS--RPPAPAIKFSNDTE 60
           MALQE+LDRFK+QQERCQ+TLSGIAASK+ + +TP+FTPAPAAS  RP APA+KFSNDTE
Sbjct: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPLAPAVKFSNDTE 60

Query: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKV 120
           RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINE+CYVDINSNKAV+DSLRNNPKV
Sbjct: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV 120

Query: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLL 180
           HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKD+YPSVMEDLQALKASGQVWLL
Sbjct: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL 180

Query: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240
           SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR
Sbjct: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240

Query: 241 ANAQNVASSKPKXXXXKQEISKRTKLTNAHLPELFKN 275
           ANAQ+VASSKPK XXXKQEISKRTKLTNAHLPELFKN
Sbjct: 241 ANAQHVASSKPKPXXXKQEISKRTKLTNAHLPELFKN 277

[Close]

BLAST of Carg22211 vs. NCBI nr
Match: XP_022136771.1 (general transcription factor IIE subunit 2-like [Momordica charantia])

HSP 1 Score: 485.0 bits (1247), Expect = 1.7e-133
Identity = 255/276 (92.39%), Postives = 268/276 (97.10%), Query Frame = 0


Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAA--SRPPAPAIKFSNDTER 60
           MALQ+KLDRFK+QQERCQTTL+GIAASK +++TP+FTPAPAA   RPPAPA+KFSNDTER
Sbjct: 1   MALQDKLDRFKKQQERCQTTLTGIAASK-SSSTPKFTPAPAAPNGRPPAPAVKFSNDTER 60

Query: 61  LQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVH 120
           LQHINSIRKSPVGAQIKRVIDLLLETR A TPEQINE+CYVDINSNKAVFDSLRNNPKVH
Sbjct: 61  LQHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEACYVDINSNKAVFDSLRNNPKVH 120

Query: 121 YDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLS 180
           YDGRRF+YKSKHDLKDK+QLLYLIRKFPEGIAVIDLKDSYP+VMEDLQALKASGQVWLLS
Sbjct: 121 YDGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYPTVMEDLQALKASGQVWLLS 180

Query: 181 NFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRA 240
           NFDSQEDIAYPNDPRIQIKVDDDLK LFREIELPRDMLDVEKDLQKNGMKPATNTAKRRA
Sbjct: 181 NFDSQEDIAYPNDPRIQIKVDDDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRRA 240

Query: 241 NAQNVASSKPKXXXXKQEISKRTKLTNAHLPELFKN 275
           NAQ+VASSKPK XXXKQEISKRTKLTNAHLPELFKN
Sbjct: 241 NAQHVASSKPKPXXXKQEISKRTKLTNAHLPELFKN 275

[Close]

BLAST of Carg22211 vs. TAIR10
Match: AT4G20330.1 (Transcription initiation factor TFIIE, beta subunit)

HSP 1 Score: 347.8 bits (891), Expect = 6.0e-96
Identity = 189/280 (67.50%), Postives = 231/280 (82.50%), Query Frame = 0


Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPR-FTPAPAA---SRPPAPAIKFSNDT 60
           MAL+E+LD+F +QQ +CQ+TLS IA+S+  T++ R   P PAA    +P A  +KFS+DT
Sbjct: 1   MALKEQLDKFNKQQVKCQSTLSSIASSRERTSSSRQNVPLPAAITQKKPDAAPVKFSSDT 60

Query: 61  ERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPK 120
           ERLQ+IN+IRK+PVGAQIKRVIDLL E R A TPEQINE C+VD+++NKAVFDSLR NPK
Sbjct: 61  ERLQNINNIRKAPVGAQIKRVIDLLYERRLALTPEQINEWCHVDMHANKAVFDSLRKNPK 120

Query: 121 VHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWL 180
            HYDGRRFSYK+ HD+ DKNQLL L+RK+ +GIAV+DLKD+YP+VMEDL+AL ASG ++L
Sbjct: 121 AHYDGRRFSYKATHDVNDKNQLLSLVRKYLDGIAVVDLKDAYPNVMEDLKALSASGDIYL 180

Query: 181 LSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKR 240
           LSN  SQEDIAYPND + +IKVDD+ K LFR+I +P DMLDVEK+L K G+KPATNTA+R
Sbjct: 181 LSN--SQEDIAYPNDFKCEIKVDDEFKALFRDINIPNDMLDVEKELLKIGLKPATNTAER 240

Query: 241 RANAQ-NVASSKPK-XXXXKQEISKRTKLTNAHLPELFKN 275
           RA AQ +  S+KPK     KQEISKRTKLTNAHLPELF+N
Sbjct: 241 RAAAQTHGISNKPKDKKKKKQEISKRTKLTNAHLPELFQN 278

[Close]

BLAST of Carg22211 vs. TAIR10
Match: AT4G21010.1 (Transcription initiation factor TFIIE, beta subunit)

HSP 1 Score: 281.2 bits (718), Expect = 6.9e-76
Identity = 159/277 (57.40%), Postives = 211/277 (76.17%), Query Frame = 0


Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQ 60
           MAL+E+LD+F +QQE+CQ+TLS I++S+T  +      A  + +P     KFS +T++LQ
Sbjct: 1   MALREQLDKFNKQQEKCQSTLSSISSSRTALSRSYVPAATTSQKPNVFRGKFSENTKQLQ 60

Query: 61  HINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVHYD 120
           HI +IR S VGAQ+K VIDLL +TR A+T EQINE+CYVD+++NKAVFDSLR NPKVHYD
Sbjct: 61  HITNIRNSAVGAQMKIVIDLLFKTRLAYTAEQINEACYVDMHNNKAVFDSLRKNPKVHYD 120

Query: 121 GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQV-WLLSN 180
           GRRFSYK+ H++KDK QLL  + K  + I V DLKD+YP+VMEDL++LK+SG++ WLLSN
Sbjct: 121 GRRFSYKATHNIKDKKQLLSFVNKSDKVIDVSDLKDAYPNVMEDLKSLKSSGEIFWLLSN 180

Query: 181 FDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRAN 240
            DS+E   Y N+     K+DD+LK LFR+I +P DML+VEK+L K G+KPATN A+RRA 
Sbjct: 181 TDSKEGTVYRNNMEYP-KIDDELKALFRDI-IPSDMLEVEKELLKIGLKPATNIAERRAA 240

Query: 241 AQ-NVASSKPK-XXXXKQEISKRTKLTNAHLPELFKN 275
            Q +  S+KPK   XX  EI+ RTKLTN+H+ ELF++
Sbjct: 241 EQLHGVSNKPKDKKXXXXEITNRTKLTNSHMLELFQS 275

[Close]

BLAST of Carg22211 vs. Swiss-Prot
Match: sp|Q54KJ8|T2EB_DICDI (General transcription factor IIE subunit 2 OS=Dictyostelium discoideum OX=44689 GN=gtf2e2 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.7e-13
Identity = 59/223 (26.46%), Postives = 118/223 (52.91%), Query Frame = 0


Query: 10  FKRQQERCQTTLSGI-AASKTTTTTPRFTPAPAASRPPAPAIKFSN-DTERLQHINSIRK 69
           FK  Q +   TL+ I   S +T +  ++ P  +       A + S+  T        +++
Sbjct: 6   FKETQMKAIETLNSIKKPSSSTNSAFKYIPKISGGXXXXSANRQSSIYTANTLRDKQVKE 65

Query: 70  SPVGAQIKRVIDLL--LETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVHYDGR-RF 129
            P    +  +++ L  LE   A T E ++ + ++ I+    + + LRNN K+   G  RF
Sbjct: 66  KPSNRIVYDIVNYLKTLEGIPADTKEIMHSTNHM-IDDKPEILELLRNNEKIIDHGNDRF 125

Query: 130 SYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNFDSQE 189
           S+K K +++ +  +L L+  +P GI V +L +SY +   D++ LK + Q++ +   +S  
Sbjct: 126 SFKPKFNVRTQRDILDLLPNYPGGILVSELAESYNNAESDVKKLKETKQIFAIKAAESAC 185

Query: 190 DIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGM 228
           DI +PND R+++ +  +L  +++ I+LP +  D+EK+++  G+
Sbjct: 186 DIIFPNDERLRVPLSSELVDMWKSIKLPNE-ADLEKEMKDAGL 226

[Close]

BLAST of Carg22211 vs. Swiss-Prot
Match: sp|P79011|T2EB_SCHPO (Transcription initiation factor IIE subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tfa2 PE=1 SV=2)

HSP 1 Score: 77.0 bits (188), Expect = 3.6e-13
Identity = 67/240 (27.92%), Postives = 121/240 (50.42%), Query Frame = 0


Query: 41  AASRPPAPAIKFSNDTERLQHINSIRKSPVG----AQIKRVIDLLLETRQAFTPEQINES 100
           AAS P + ++K       L + +    S VG    +Q+   ++ L E  +  T E+I  +
Sbjct: 47  AASSPGSYSLKKKRSKTSLVY-SQPADSGVGTHYLSQLHYAVEYLKERNEPKTAEEI--A 106

Query: 101 CYVDINSNKAVFDSLRNNPKVHYDGRR--FSYKSKHDLKDKNQLLYLI--RKFPEGIAVI 160
            Y+       + + L+ N +++YD R   F++K  H+++    LL  +  +K   G+++ 
Sbjct: 107 SYLSTPLTPMLLNLLKKNNRIYYDERNETFTFKPLHNIRSGAGLLAYLDSQKTHVGMSIK 166

Query: 161 DLKDSYPSVMEDLQALKASGQVWLL-SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIEL 220
           +L+D +P+V  +L+ L+  G+V LL +  D    + + ND      VD + +Q++ EI +
Sbjct: 167 ELRDGWPNVTVELEELEKQGEVLLLRTRKDGVPKMVWRNDKSCDCHVDKEFQQVWHEIPI 226

Query: 221 PRDMLDVEKDLQKNGMKPAT---NTAKRRANAQNVASSKPKXXXXKQEISKRTKLTNAHL 269
           P   LD+  +L K G+KP +   +T KR  + Q     KPK        ++R K+TN HL
Sbjct: 227 P-PTLDLASELGKYGLKPTSVDPSTVKRAGHNQTPKQKKPK--------TRRGKITNTHL 274

[Close]

BLAST of Carg22211 vs. TrEMBL
Match: tr|A0A0A0KWU5|A0A0A0KWU5_CUCSA (Transcription initiation factor IIE subunit beta OS=Cucumis sativus OX=3659 GN=Csa_4G049080 PE=3 SV=1)

HSP 1 Score: 495.4 bits (1274), Expect = 8.5e-137
Identity = 259/277 (93.50%), Postives = 272/277 (98.19%), Query Frame = 0


Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTT-TTPRFTPAPAAS--RPPAPAIKFSNDTE 60
           MALQE+LDRFK+QQERCQ+TLSGIAASK+ + +TP+FTPAPAAS  RPPAPA+KFSNDTE
Sbjct: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTE 60

Query: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKV 120
           RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINE+CYVDINSNKAV+DSLRNNPKV
Sbjct: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV 120

Query: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLL 180
           HYDGRRFSYKSKHDLKDKNQLLYL+RKFPEGIAVIDLKD+YPSVMEDLQALKASGQVWLL
Sbjct: 121 HYDGRRFSYKSKHDLKDKNQLLYLVRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL 180

Query: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240
           SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR
Sbjct: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240

Query: 241 ANAQNVASSKPKXXXXKQEISKRTKLTNAHLPELFKN 275
           ANAQ+VASSKPK XXXKQEISKRTKLTNAHLPELFKN
Sbjct: 241 ANAQHVASSKPKPXXXKQEISKRTKLTNAHLPELFKN 277

[Close]

BLAST of Carg22211 vs. TrEMBL
Match: tr|A0A1S3BS95|A0A1S3BS95_CUCME (Transcription initiation factor IIE subunit beta OS=Cucumis melo OX=3656 GN=LOC103493148 PE=3 SV=1)

HSP 1 Score: 491.9 bits (1265), Expect = 9.4e-136
Identity = 259/277 (93.50%), Postives = 271/277 (97.83%), Query Frame = 0


Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTT-TTPRFTPAPAAS--RPPAPAIKFSNDTE 60
           MALQE+LDRFK+QQERCQ+TLSGIAASK+ + +TP+FTPAPAAS  RP APA+KFSNDTE
Sbjct: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPLAPAVKFSNDTE 60

Query: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKV 120
           RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINE+CYVDINSNKAV+DSLRNNPKV
Sbjct: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV 120

Query: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLL 180
           HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKD+YPSVMEDLQALKASGQVWLL
Sbjct: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL 180

Query: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240
           SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR
Sbjct: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240

Query: 241 ANAQNVASSKPKXXXXKQEISKRTKLTNAHLPELFKN 275
           ANAQ+VASSKPK XXXKQEISKRTKLTNAHLPELFKN
Sbjct: 241 ANAQHVASSKPKPXXXKQEISKRTKLTNAHLPELFKN 277

[Close]

BLAST of Carg22211 vs. TrEMBL
Match: tr|A0A2N9ECV6|A0A2N9ECV6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS410 PE=3 SV=1)

HSP 1 Score: 442.6 bits (1137), Expect = 6.5e-121
Identity = 231/280 (82.50%), Postives = 254/280 (90.71%), Query Frame = 0


Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASK--TTTTTPRFTPAPAA---SRPPAPAIKFSND 60
           MALQEKLDRFK+QQE+CQ+TL+ IAAS   TTTTTP+FTPAPAA   +R PAPA+KFSND
Sbjct: 1   MALQEKLDRFKKQQEKCQSTLTSIAASNKATTTTTPKFTPAPAAPVVARAPAPAVKFSND 60

Query: 61  TERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNP 120
           TERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQIN + YVDIN NKAVFDSLRNN 
Sbjct: 61  TERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINAAVYVDINGNKAVFDSLRNNL 120

Query: 121 KVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVW 180
           KV+YDG+RFSYKSKHDL+DKNQLLYL+RKFPEGIAVIDLKDSYP+VMEDLQALKA+GQ+W
Sbjct: 121 KVYYDGKRFSYKSKHDLRDKNQLLYLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIW 180

Query: 181 LLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAK 240
           LLSNFDSQEDIAYPNDPR+ IKVDDDLK LFR IELPRDMLD+E+DLQKNGMKPATNTA+
Sbjct: 181 LLSNFDSQEDIAYPNDPRVPIKVDDDLKLLFRGIELPRDMLDIERDLQKNGMKPATNTAQ 240

Query: 241 RRANAQ-NVASSKPKXXXXKQEISKRTKLTNAHLPELFKN 275
           RRA ++    SSK K    K EI+KRTKLTNAHLPELF+N
Sbjct: 241 RRARSEVQGMSSKAKPKKKKHEITKRTKLTNAHLPELFRN 280

[Close]

BLAST of Carg22211 vs. TrEMBL
Match: tr|A0A2N9EQG9|A0A2N9EQG9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4964 PE=3 SV=1)

HSP 1 Score: 435.3 bits (1118), Expect = 1.0e-118
Identity = 226/278 (81.29%), Postives = 251/278 (90.29%), Query Frame = 0


Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTP---APAASRPPAPAIKFSNDTE 60
           MALQEKLDRFK+QQE+CQ+TL+ IAAS    T+ +FTP   AP+ +R PAPA+KFSNDTE
Sbjct: 1   MALQEKLDRFKKQQEKCQSTLTSIAAS-NKATSHKFTPVAAAPSVARAPAPAVKFSNDTE 60

Query: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKV 120
           RLQHINSIRKSPVGAQIKRVI+LLLETR A+TPEQINE+CYVDINSNKAVFDSLRNN KV
Sbjct: 61  RLQHINSIRKSPVGAQIKRVINLLLETRLAYTPEQINEACYVDINSNKAVFDSLRNNLKV 120

Query: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLL 180
           HYDG+RFSYKSKHDLKDKNQLLYL+RKFPEG+AVIDLKDSYP+VMEDLQALKA+GQ+WLL
Sbjct: 121 HYDGKRFSYKSKHDLKDKNQLLYLVRKFPEGVAVIDLKDSYPTVMEDLQALKAAGQIWLL 180

Query: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240
           SNFDSQEDIAYPNDPR+ IKVDDDLK LFR IELPRDMLD+EKDLQKNGMKPATNTA+RR
Sbjct: 181 SNFDSQEDIAYPNDPRVPIKVDDDLKLLFRGIELPRDMLDIEKDLQKNGMKPATNTAQRR 240

Query: 241 ANAQ-NVASSKPKXXXXKQEISKRTKLTNAHLPELFKN 275
           A ++    SSK K    K EI+KRTKLTNAHLPELF+N
Sbjct: 241 ARSEVQGLSSKSKPKKKKHEITKRTKLTNAHLPELFRN 277

[Close]

BLAST of Carg22211 vs. TrEMBL
Match: tr|B9GKK9|B9GKK9_POPTR (Transcription initiation factor IIE subunit beta OS=Populus trichocarpa OX=3694 GN=POPTR_001G107500v3 PE=3 SV=1)

HSP 1 Score: 432.2 bits (1110), Expect = 8.8e-118
Identity = 229/281 (81.49%), Postives = 247/281 (87.90%), Query Frame = 0


Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASK-----TTTTTPRFTPAPAAS-RPPAPAIKFSN 60
           MALQE+LDRFK+QQE+CQ+TL+ IA S+      T  T    PAP+ S R PAPA+KFSN
Sbjct: 1   MALQEQLDRFKKQQEKCQSTLTSIAKSRPSKSSLTQKTVAVAPAPSTSARTPAPAVKFSN 60

Query: 61  DTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNN 120
           DTERLQHINSIRK+P GAQIKRVIDLLLETRQAFTPEQIN+ CYVD+NSNKAVFDSLRNN
Sbjct: 61  DTERLQHINSIRKAPAGAQIKRVIDLLLETRQAFTPEQINDHCYVDMNSNKAVFDSLRNN 120

Query: 121 PKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQV 180
           PKVHYDG+RFSYKSKHDLKDK+QLL LIRKFPEGIAVIDLKDSYPSVM+DLQALKA GQ+
Sbjct: 121 PKVHYDGKRFSYKSKHDLKDKSQLLVLIRKFPEGIAVIDLKDSYPSVMDDLQALKAVGQI 180

Query: 181 WLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTA 240
           WLLSNFDSQEDIAYPNDPR+ IKVDDDLKQLFR IELPRDMLD+EKDLQKNGMKPATNTA
Sbjct: 181 WLLSNFDSQEDIAYPNDPRMVIKVDDDLKQLFRGIELPRDMLDIEKDLQKNGMKPATNTA 240

Query: 241 KRRANAQ-NVASSKPKXXXXKQEISKRTKLTNAHLPELFKN 275
           KRRA AQ    S+K K    K EISKRTKLTNAHLPELFKN
Sbjct: 241 KRRAAAQVQGISTKQKAKKKKHEISKRTKLTNAHLPELFKN 281

The following BLAST results are available for this feature:

BLAST of Carg22211 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022931511.1	5.8e-145	100.00	general transcription factor IIE subunit 2-like [Cucurbita moschata] >XP_0235522...	[more]
XP_022984812.1	1.3e-144	99.64	general transcription factor IIE subunit 2-like [Cucurbita maxima]	[more]
XP_011653191.1	1.3e-136	93.50	PREDICTED: general transcription factor IIE subunit 2-like [Cucumis sativus] >KG...	[more]
XP_008452012.1	1.4e-135	93.50	PREDICTED: general transcription factor IIE subunit 2-like [Cucumis melo] >XP_00...	[more]
XP_022136771.1	1.7e-133	92.39	general transcription factor IIE subunit 2-like [Momordica charantia]	[more]

BLAST of Carg22211 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G20330.1	6.0e-96	67.50	Transcription initiation factor TFIIE, beta subunit	[more]
AT4G21010.1	6.9e-76	57.40	Transcription initiation factor TFIIE, beta subunit	[more]

BLAST of Carg22211 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q54KJ8\|T2EB_DICDI	2.7e-13	26.46	General transcription factor IIE subunit 2 OS=Dictyostelium discoideum OX=44689 ...	[more]
sp\|P79011\|T2EB_SCHPO	3.6e-13	27.92	Transcription initiation factor IIE subunit beta OS=Schizosaccharomyces pombe (s...	[more]

BLAST of Carg22211 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KWU5\|A0A0A0KWU5_CUCSA	8.5e-137	93.50	Transcription initiation factor IIE subunit beta OS=Cucumis sativus OX=3659 GN=C...	[more]
tr\|A0A1S3BS95\|A0A1S3BS95_CUCME	9.4e-136	93.50	Transcription initiation factor IIE subunit beta OS=Cucumis melo OX=3656 GN=LOC1...	[more]
tr\|A0A2N9ECV6\|A0A2N9ECV6_FAGSY	6.5e-121	82.50	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS410 PE=3 SV=1	[more]
tr\|A0A2N9EQG9\|A0A2N9EQG9_FAGSY	1.0e-118	81.29	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4964 PE=3 SV=1	[more]
tr\|B9GKK9\|B9GKK9_POPTR	8.8e-118	81.49	Transcription initiation factor IIE subunit beta OS=Populus trichocarpa OX=3694 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006367	transcription initiation from RNA polymerase II promoter

Vocabulary: **INTERPRO**
Term	Definition
IPR003166	TFIIE_bsu_DNA-bd

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22211-RA	Carg22211-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003166	Transcription factor TFIIE beta subunit, DNA-binding domain	PFAM	PF02186	TFIIE_beta	coord: 72..131 e-value: 5.8E-9 score: 36.0
IPR003166	Transcription factor TFIIE beta subunit, DNA-binding domain	PROSITE	PS51351	TFIIE_BETA_C	coord: 58..133 score: 11.04
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 226..246
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 223..274
None	No IPR available	PANTHER	PTHR12716	TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNIT	coord: 1..274

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22211	Cla014643	Watermelon (97103) v1	carwmB0588
Carg22211	Csa4G049080	Cucumber (Chinese Long) v2	carcuB0617
Carg22211	MELO3C016344	Melon (DHL92) v3.5.1	carmeB0596
Carg22211	ClCG07G007970	Watermelon (Charleston Gray)	carwcgB0577
Carg22211	CSPI04G05880	Wild cucumber (PI 183967)	carcpiB0623
Carg22211	Cucsa.106900	Cucumber (Gy14) v1	carcgyB0663
Carg22211	CmaCh04G007300	Cucurbita maxima (Rimu)	carcmaB0826
Carg22211	CmaCh16G005860	Cucurbita maxima (Rimu)	carcmaB0825
Carg22211	CmoCh16G006350	Cucurbita moschata (Rifu)	carcmoB0803
Carg22211	CmoCh04G007750	Cucurbita moschata (Rifu)	carcmoB0804
Carg22211	Lsi07G008980	Bottle gourd (USVL1VR-Ls)	carlsiB535
Carg22211	Cp4.1LG14g02310	Cucurbita pepo (Zucchini)	carcpeB0838
Carg22211	CsGy4G005740	Cucumber (Gy14) v2	carcgybB0589
Carg22211	MELO3C016344.2	Melon (DHL92) v3.6.1	carmedB0603
Carg22211	CsaV3_4G006050	Cucumber (Chinese Long) v3	carcucB0624
Carg22211	Cla97C07G135130	Watermelon (97103) v2	carwmbB0618
Carg22211	Bhi01G001793	Wax gourd	carwgoB0702

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg22211	Carg14126	Silver-seed gourd	carcarB535

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22211	Cucurbita pepo (Zucchini)	carcpeB0839