Cp4.1LG13g04110 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG13g04110
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Ribosome maturation factor rimP
Location	Cp4.1LG13 : 6263771 .. 6270716 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATTATTCTACCAATTACCAAATTTCACATTCCAAATATAATTTTATCAATAATTTTGAAAATAATGAAGTATTAATCTTCTGGTATGTAATGAATCGTGAGTTTTAATATTTAAGGATTTAAATTAAAAATAAAAATTATGGACGAGAAGTATAATCGAAACATATAGTTGAATTGACATGTAATTATCCCCATTTGTTGGATTGCGTCTCTGCGGAGCGGCCGCCATAGCAGCTGTGTGTTGTGAGCTTCATCATTCCCAGTTTTCCAGTTTCCTCCGTTAAGAGAAGTGATGGTCATGATTACTGTCCGTAATTTCAGACTCTCCGCAGTTCCAATTTCATCAATCCTTCCACAGAGTGGCTTCCGTTCGTCTTTAATCTCGTCCAGAAATCTTCCCTTCCCATTTGTTGGCCATCGGTTTCCTTCTACGTCGAACAATCCCTTATTACTTCATGCCAGAAAGAAAAACTCAGAATCAGAGCCAGTTATCAAACGAAACATCGTTGAGGAAGTGTCGGAGGATGAAGAAGACGATGAACTTTTCGACGAACTTGAAGACGGTAAGATCCATCAATAAAACCTTCGCTCAATTTATTCCTCTAGTTTCTATTGAATCCTAGTTTAGACTGGTCTTGGAATGAGTAAATTTCGGGGAACTTTCTTGATTGCGTAGATGAGATAATGGACGATGATGGCGAAGATTACTTTGAAGAAGAGTTTATGGAGGATAATGCTGAAGTCTATGTAAGATTCTTGTCTCTAAACATGGAGATATTGTGTTGGAAATCTTAACTGAAATTCTGGAGTTGATAATTTGATTTGAAGGTAGGGGATGGCGGGGAAGGAGGTGGAATTTCCCTTGCTGGGACATGGTGGGATAAAGAAGCACTGGCTATGGCTGAAGAGGTTATTCTTTCATTTCATGGCGACTTGAAGATTTATGCGTTCAAAACAGTCTCTAATTCCACTGTTCAAGTGCGTATTGAAAAGCTTTCTAACAAGTAAGTTTTTAGATTCTATGAACACATATTAGACCGTGGTTTTGGTTTTCTTGTATGATAATAATTTCTTGTTGCTGCATTCTTAAGATTGAAATGCCGTCTGCTAGCTCCTTCTTTCTCAAACGGATTGTTTGAGGGATGATGATATTAGAAAATAGTATGATTACTAATCGTAGAGAGTTCACGTTAGAGATTTAGGACGTGTCTGGAATGACTTTCTAAGAGCTTAAAAACACGTTTGTAAACACTTGAAAAATCATTTCAAACAAGCTCTTATACGAGTTCACCCGCTTCATATGGGTTAGAACCAATACGAGTTCAACCTGTACCTATCTTTTAAGCTGGAAATGGAGATGCCTTTTGCTTTCAAGTAAATCAAGAGAAAGCCATTAGTTACCCTTTGGCTTCAAGTTTTCCTTCTGATATTAGTGTTCTCATTGAACCCGTATTCACAACTCGACTCAGAGAAGAATCGGATTTCTTCGAACTCCTTATTGCTTGAATTAAATCACATTAATTCGAAGGATTTCCAGATATTAAGGACGTTTCGAGTTGAAGTCTACTTTAAGCATATGAAAATGTGTTACATTTTACATGTTGTTATCCCAAGTTTACTGCGTTCTTGGTAAGACTGAGTACCATTTCCTAGGTTCTAATTCCTAACAATGCACCTCAGATCGGGTTCCCCCAGGATGGAAGATATCGAGGCTTTCTCTTCAAGATATCGAGCACGATTGGATGAAGCAGAGCTTTCTAAAACCGTGCCAGAGAACATATCTTTAGAGGTATGCTGCCTGTTTCATTGCTCAAATTCCCTCGTTTCTTTTTTCTATATCATCAACCAATCTATCTTTAGCAATTAGAAGAAGATTTTCACTTCCATTATTCAATTTAGTTTCCCACTTGACAAGACCAAAAGAGAATTGCTCTACTCTGTTAGCTTTTGGGTCTAAATGGATTTTAATCCTTCCAACATTATAAGGTCTCATCTCCTGGTGTTGAACGTGTCGTTCGGATTCCCGACGAGCTGGATCGGTTCAAAGAAAGAGCAATGTATGTGAAATACACGAACGATGTAGTTACACCCAGTTCGTCCTCTGAGAGTGATGGCATTTTCAAGCTTGTGTCATTCGACATAGAAACAAGGTGCTGCATTTGGGGTTTAGCAGATGTGAGGATAAATAGAGAGAAGGCAGGAAAAGGAAGACCACTAAGCAAAAAACAAAGAGAGTGGCGTTTAGAGACTCCTTTCGATTCATTACGCTTGGTTAGACTGTATTCTGATTACTGATAATGCAATCAAATTTTGGTCGAAATTCAAGGTGTCGGTGTATAGTAAACTAGCAATTATTATCTTATGAACGTGTGATTCGTTTTTAATGCTATTCTCTATCTGAACACATTTTGAATACAAATTTTGCAAGATAAACGCTTAATAGTTTCTGGATTGAGTTGGTTTAGTCAACATGAACATTGATATGCATGAATTATACTTGTTTGTTGTCAAATTGTTCTGATTGTATTGGTTGAATTATGAAACTTTATCTGTACTGTAATGGCATTGACTGAGGCACTCCTGGTTTGGTACATGCTAGAAAACGACCAATCAGTCTCTTTACCGGCGTGATGAATGAAAAACGGCTCCTTTTGTCGACACCTTTAGCTTTCTAACAATATGCTGTTTCTATACTATCTTCGTGACTTCACTTATTCATTACATGCATTGTACTTAGTTACCAAAAATATGCATCATTTTACTCATTTATTTCTTGTTGTTTTTCACTTAACTTTTCTGTTTTTGGTGTGTAAGGAAGTCATACAATTGTAAGAGGATTGGAGGCCGTAGCTGAAGGAAAAAGCCTAAAAAGATAGCTTTTTACTTTCTGCTTTATTGACCCATTTCATCATCTTTACGAATTTGAAGGTATGGTGATTAAATAAATGGTGTATTAGGTGCAAATGAAAATTTTAAGTTAAAAGAAGGGCAGGGGTTGGTGCGTGGGGTGATCGAAAGCAGTGTCTGCATGCACCTATTGTTGTCATTATATCCTTATAAAAATCCCATGTGTATTACCTTTTTCATAGCCAGCTCCATTAGAAAATTATCTATAACTCTCTTTTGGAGTACAATATATACTCAACACAGGGTAGTAGGTTTTGAGCACTAATGAGGTTGCTGTTTGAAGGGATGGAGCGGGGGAGAAGAACTCTTGGGGCTGCTAGGGGGTGCTTTTTCATTGCCTTGTGGATGGCCACACAGGGGTTCCCGGTCGAGGATCTCGTCGGGAGGCTCCCCGGCCAGCCAACGGTCAATTTTAGACAATTTGCAGGTTATATCGATGTCGATGTCGACGCCGGAAGAAGTTTGTTTTACTACTTTGCTGAAGGGCAGCAAGATCCCCATCTCCTGCCCCTCACTCTCTGGCTCAATGGAGGTCTGGTTTGGTTTAGAACTGTTTTAGTTTATGATATGATTAGATCTTGAAAGGCCATTCTGTTATACTGATAGAATCAAACTTGGGGGAGGATATTAAATTGTTGAAAGGTCAATGCAGGTCCAGGTTGCTCGTCTGTTGGTGGGGGTGCCTTTACAGAGCTGGGGCCCTTTTATCCCAGAGGTGATGGCCGAGGCCTTCGAAGAAACTCCATGTCCTGGAATAAAGGTAGTGCTTTAGTTTTCTTCTTCTTCTTCTTCTTCTTTTAAATGTTGAAAGAATCTGAATGATATGGTGAATTGAGTTTGATAGCCTCGAATCTGCTGTTTGTGGAGTCGCCTGTGGGGGTAGGATGGTCATACTCAAACACAACGTCAGACTACACTTGTGGTGATGACTCCACAGGTTCTAATTCCTATACTTTAGAGGTTAATTTAATTGAAATTTTGTTTGATTAAAGATTAAATAATGGAGAGAGATTGGATCTGTGCAGCCAGAGACATGCTCACCTTTATGTTGAAATGGTATGACAAGTTTCCAGCTTTCAGAGATAGCTCATTTTTCCTCACAGGAGAAAGTTATGCAGGTCATTTTTTATACTTTTTTTTTTATTATTATTAAATTATAAATTTACTTCGTTTTTTGGAACGGTCCAAGCCCACTACTAGTAAATATTATCTTTTTGGGACCTTTCCTTTCGAGTTTTCCCTCAAGGTTTTTAAAACGCGTCTGCCAGGATAGGTTTTCACACCCTTATAAAAAATGTTTCGTTCCTCTTTTCAACCAATGTGGGATCTCGCAATCCACCTTCTTTTGGGCCCAGTGTCTTCGCTAGCACTCGTTTCCCTCTCCAACCGATGTGGGATCTCATAATCTCTACCCCTTTGGAGCCTAGCATCCTCGCTGCCACTCGTTACTCTCTCCAATCGATGTGGGATCTCACAAACATCGGTTAGAGAAAAGGGAATGAAACATTTCTTATAAGAATATAGAAACCTCTCTCTAGCATATGCATTTTAAAAGTTTGTGGGGGAAGTCCGGAAAGCCCAAAAATGACAATATCAACTACTTGTGGGTTTGGGCTATTCCATTTTCGTTCGTATTTATATGATATCTTTATTTTTTTCAAAAAAAAATTAAAATTAAATTTTTTTTTTTTTTTTTTTTTGGAGAAATTACTCTTTTTAAGCCTTGAGATTTGAGTTTTTGGTCCGTAGATTTCAAAATATTACATTTTTCCTTTGAAATCTAAGTTTATACTCACTTCTATTATTTGAACTTAACTTTTTAGTTAAGTAATTTAAAATTGAATTTTTTTATTTATTAATTTTAATAGTGAAAGAAAATTAATAAAAACTAATTAGTAATTTTTATAGACATTAACACCAAGGATCCAAATGAGTTTCTAGTAAAAAATAATAATAATAAAGATAAGAGTTTCGAGCGTTAATCTTCAAATTTAGAAACCAAATAAAAATAAAATTAAGAACTTCAAGAATATTTTGAAATATAACAATCAAATGAAAATTAAACTCAAAATTTAATGATAAAAATGTAACATTTTGACATAGGAATCAAAATGAAAATGAAAACTAGCGATTAAAACCACGATCATGAATTATTAAGCAATATAGTTAATATGTTCAATACCAGTTCAAAATTCTATCTTTAACTTTATAAGTATTGAAGACTAAATCGACAATCGGAGAATGAACGTTATACTAAATTCGTAACTTAATTTTAATTTATTCTGAATGTTAGAAAGAAATGGGAAAAAATGTGAAAGAGAAAAGATATTGATTTGATGCAGGCCATTACATTCCTCAGCTAGCTGAAGCAATGCTGGACTATAACATTCACTCAAAGGGCTTCAAGTTCAATATCAAGGGAGTTGCTGTAAGAACAATGAACTCTAAAACCATTACTTTTTGAATTCAACTTACTTTTGTAATCTAATGCTGCCTGCAGCTTGGGAACCCATTACTTAATCTGGACAGGGATGTCCCAGCAACCTACGAGTTCTTTTGGTCTCATGGCATGATTTCCGACGAGGTTTGGTTTGCAATCAATAGAGACTGTGATTTTGATGATTATCTGTTGACTACTCCACACAATGTAACCAAATCCTGCATCCAAGCCATCGCGGACGCCAACGGTATCGTTAGCGAGTACATAAACACCTACGATGTTCTTTTGGATGTCTGCTACCCCTCCATTGTCCAGCAAGAGCTGAGATTGAAGAAACTGGTTCGTTTATGCTGTTCCTGTTTTCTTTTAGTGCATCGATACGTGGGTCTAAGTGATTCGAACCTCTAATGTTTTAATCAGTTGAGACTCTAAGTTGGTGTCGAGATTGTTATGAGTGGTTCGGTTTGGTTCGTTTTGCAGGCGACTAAAATAAGCATGGGAGTTGACGTGTGCATGACCCAAGAAAGGCGTTTCTATTTCAATTTACCAGAAGTTCAAAAGGCTCTTCATGCAAATCGTACTAATTTGCCTCATCAATGGTTCATGTGCAGTGAGTAAGTAAGCCCACATTCTCTTTTTTGGCATCCATATTACATCATAATAGTTATGCCATGAACACAGCCTAAATCTTGATTGTTGGTGCTTTTGAGCAGCTTAGTAGATTATAATTACAATGATACGAACATCAACATGCTTCCCTCGCTGAAGAGAATAATCCAAAACCACATCCCAATTTGGATCTTCAGGTACGTTTCGAACTTTCTCTTTAAACTTTGAACGTTAAGAATGGTGAATGAATAAATGAATGAATACACGCACAGTGGGGATGAGGATTCAGTGGTGCCATTGATGGGGTCTAGGACGCTAGTCCGAGAGTTAGCTCATGACCTTAAATTCAAGATCACAGTACCCTACGGAGCTTGGTTTCACAAGGGCCAAGTCGGGGGCTGGGCCATCGAGTACGGTAATATGCTGACATACGCAACGGTGCGTGGGGCAGCTCACATGGTGCCCTACGCTCAGCCCTCAAGAGCTCTGCATTTGTTCTCTTCATTTGTAAGAGGGAGGAGGCTGCCCAATTCTACCCGCCCTTCCATCGATGATTGAAACAAAACAAATTAAACGTGAATGGGTTTGGTTTGGTTTGATTGAGTCGGGTTAATGATAATCGAAAGAGTGGAATGTAATGCAAGAATTTGTTTAGAAATAATGAAAAGCTCCCAACTCATTCATTTAGCTTTTGATACACACTCAGAAATATGCTTGGCGAGCAGAGAAACAGAGGGTGGGAAGCAAGAACAGAACAAGTTTATAATGCACACAATCATTCAGGCTTAGCATCAAAGTTAAGTCTTTTTTTGTTTGTATAAAAACGCATCCCATTTCTTACCAACTTCTTCATATCCTTTCTTTAACCAATACTTCTTCAGATATTAATCCCAATGGCCTCTCTCAATACTTCCGAGTACCCATACTTTCCTTTTCCGCCTTATCATCCTTTCTGGCCGCCTCTCCCACCGCCGCACAACCCTATT

mRNA sequence

ATGAGATTATTCTACCAATTACCAAATTTCACATTCCAAATATAATTTTATCAATAATTTTGAAAATAATGAAGTATTAATCTTCTGGTATGTAATGAATCGTGAGTTTTAATATTTAAGGATTTAAATTAAAAATAAAAATTATGGACGAGAAGTATAATCGAAACATATAGTTGAATTGACATGTAATTATCCCCATTTGTTGGATTGCGTCTCTGCGGAGCGGCCGCCATAGCAGCTGTGTGTTGTGAGCTTCATCATTCCCAGTTTTCCAGTTTCCTCCGTTAAGAGAAGTGATGGTCATGATTACTGTCCGTAATTTCAGACTCTCCGCAGTTCCAATTTCATCAATCCTTCCACAGAGTGGCTTCCGTTCGTCTTTAATCTCGTCCAGAAATCTTCCCTTCCCATTTGTTGGCCATCGGTTTCCTTCTACGTCGAACAATCCCTTATTACTTCATGCCAGAAAGAAAAACTCAGAATCAGAGCCAGTTATCAAACGAAACATCGTTGAGGAAGTGTCGGAGGATGAAGAAGACGATGAACTTTTCGACGAACTTGAAGACGATGAGATAATGGACGATGATGGCGAAGATTACTTTGAAGAAGAGTTTATGGAGGATAATGCTGAAGTCTATGTAGGGGATGGCGGGGAAGGAGGTGGAATTTCCCTTGCTGGGACATGGTGGGATAAAGAAGCACTGGCTATGGCTGAAGAGGTTATTCTTTCATTTCATGGCGACTTGAAGATTTATGCGTTCAAAACAGTCTCTAATTCCACTGTTCAAGTGCGTATTGAAAAGCTTTCTAACAAATCGGGTTCCCCCAGGATGGAAGATATCGAGGCTTTCTCTTCAAGATATCGAGCACGATTGGATGAAGCAGAGCTTTCTAAAACCGTGCCAGAGAACATATCTTTAGAGGTCTCATCTCCTGGTGTTGAACGTGTCGTTCGGATTCCCGACGAGCTGGATCGGTTCAAAGAAAGAGCAATGTATGTGAAATACACGAACGATGTAGTTACACCCAGTTCGTCCTCTGAGAGTGATGGCATTTTCAAGCTTGTGTCATTCGACATAGAAACAAGGTGCTGCATTTGGGGTTTAGCAGATGTGAGGATAAATAGAGAGAAGGCAGGAAAAGGAAGACCACTAAGCAAAAAACAAAGAGAGTGGCGTTTAGAGACTCCTTTCGATTCATTACGCTTGGTTAGACTGTATTCTGATTACTGATAATGCAATCAAATTTTGGTCGAAATTCAAGGTGTCGGTGTATAGTAAACTAGCAATTATTATCTTATGAACGTGTGATTCGTTTTTAATGCTATTCTCTATCTGAACACATTTTGAATACAAATTTTGCAAGATAAACGCTTAATAGTTTCTGGATTGAGTTGGTTTAGTCAACATGAACATTGATATGCATGAATTATACTTGTTTGTTGTCAAATTGTTCTGATTGTATTGGTTGAATTATGAAACTTTATCTGTACTGTAATGGCATTGACTGAGGCACTCCTGGTTTGGTACATGCTAGAAAACGACCAATCAGTCTCTTTACCGGCGTGATGAATGAAAAACGGCTCCTTTTGTCGACACCTTTAGCTTTCTAACAATATGCTGTTTCTATACTATCTTCGTGACTTCACTTATTCATTACATGCATTGTACTTAGTTACCAAAAATATGCATCATTTTACTCATTTATTTCTTGTTGTTTTTCACTTAACTTTTCTGTTTTTGGTGTGTAAGGAAGTCATACAATTGTAAGAGGATTGGAGGCCGTAGCTGAAGGAAAAAGCCTAAAAAGATAGCTTTTTACTTTCTGCTTTATTGACCCATTTCATCATCTTTACGAATTTGAAGGGATGGAGCGGGGGAGAAGAACTCTTGGGGCTGCTAGGGGGTGCTTTTTCATTGCCTTGTGGATGGCCACACAGGGGTTCCCGGTCGAGGATCTCGTCGGGAGGCTCCCCGGCCAGCCAACGGTCAATTTTAGACAATTTGCAGGTTATATCGATGTCGATGTCGACGCCGGAAGAAGTTTGTTTTACTACTTTGCTGAAGGGCAGCAAGATCCCCATCTCCTGCCCCTCACTCTCTGGCTCAATGGAGGTCCAGGTTGCTCGTCTGTTGGTGGGGGTGCCTTTACAGAGCTGGGGCCCTTTTATCCCAGAGGTGATGGCCGAGGCCTTCGAAGAAACTCCATGTCCTGGAATAAAGCCTCGAATCTGCTGTTTGTGGAGTCGCCTGTGGGGGTAGGATGGTCATACTCAAACACAACGTCAGACTACACTTGTGGTGATGACTCCACAGCCAGAGACATGCTCACCTTTATGTTGAAATGGTATGACAAGTTTCCAGCTTTCAGAGATAGCTCATTTTTCCTCACAGGAGAAAGTTATGCAGGCCATTACATTCCTCAGCTAGCTGAAGCAATGCTGGACTATAACATTCACTCAAAGGGCTTCAAGTTCAATATCAAGGGAGTTGCTCTTGGGAACCCATTACTTAATCTGGACAGGGATGTCCCAGCAACCTACGAGTTCTTTTGGTCTCATGGCATGATTTCCGACGAGGTTTGGTTTGCAATCAATAGAGACTGTGATTTTGATGATTATCTGTTGACTACTCCACACAATGTAACCAAATCCTGCATCCAAGCCATCGCGGACGCCAACGGTATCGTTAGCGAGTACATAAACACCTACGATGTTCTTTTGGATGTCTGCTACCCCTCCATTGTCCAGCAAGAGCTGAGATTGAAGAAACTGGCGACTAAAATAAGCATGGGAGTTGACGTGTGCATGACCCAAGAAAGGCGTTTCTATTTCAATTTACCAGAAGTTCAAAAGGCTCTTCATGCAAATCGTACTAATTTGCCTCATCAATGGTTCATGTGCAGTGACTTAGTAGATTATAATTACAATGATACGAACATCAACATGCTTCCCTCGCTGAAGAGAATAATCCAAAACCACATCCCAATTTGGATCTTCAGTGGGGATGAGGATTCAGTGGTGCCATTGATGGGGTCTAGGACGCTAGTCCGAGAGTTAGCTCATGACCTTAAATTCAAGATCACAGTACCCTACGGAGCTTGGTTTCACAAGGGCCAAGTCGGGGGCTGGGCCATCGAGTACGGTAATATGCTGACATACGCAACGGTGCGTGGGGCAGCTCACATGGTGCCCTACGCTCAGCCCTCAAGAGCTCTGCATTTGTTCTCTTCATTTGTAAGAGGGAGGAGGCTGCCCAATTCTACCCGCCCTTCCATCGATGATTGAAACAAAACAAATTAAACGTGAATGGGTTTGGTTTGGTTTGATTGAGTCGGGTTAATGATAATCGAAAGAGTGGAATGTAATGCAAGAATTTGTTTAGAAATAATGAAAAGCTCCCAACTCATTCATTTAGCTTTTGATACACACTCAGAAATATGCTTGGCGAGCAGAGAAACAGAGGGTGGGAAGCAAGAACAGAACAAGTTTATAATGCACACAATCATTCAGGCTTAGCATCAAAGTTAAGTCTTTTTTTGTTTGTATAAAAACGCATCCCATTTCTTACCAACTTCTTCATATCCTTTCTTTAACCAATACTTCTTCAGATATTAATCCCAATGGCCTCTCTCAATACTTCCGAGTACCCATACTTTCCTTTTCCGCCTTATCATCCTTTCTGGCCGCCTCTCCCACCGCCGCACAACCCTATT

Coding sequence (CDS)

ATGGTCATGATTACTGTCCGTAATTTCAGACTCTCCGCAGTTCCAATTTCATCAATCCTTCCACAGAGTGGCTTCCGTTCGTCTTTAATCTCGTCCAGAAATCTTCCCTTCCCATTTGTTGGCCATCGGTTTCCTTCTACGTCGAACAATCCCTTATTACTTCATGCCAGAAAGAAAAACTCAGAATCAGAGCCAGTTATCAAACGAAACATCGTTGAGGAAGTGTCGGAGGATGAAGAAGACGATGAACTTTTCGACGAACTTGAAGACGATGAGATAATGGACGATGATGGCGAAGATTACTTTGAAGAAGAGTTTATGGAGGATAATGCTGAAGTCTATGTAGGGGATGGCGGGGAAGGAGGTGGAATTTCCCTTGCTGGGACATGGTGGGATAAAGAAGCACTGGCTATGGCTGAAGAGGTTATTCTTTCATTTCATGGCGACTTGAAGATTTATGCGTTCAAAACAGTCTCTAATTCCACTGTTCAAGTGCGTATTGAAAAGCTTTCTAACAAATCGGGTTCCCCCAGGATGGAAGATATCGAGGCTTTCTCTTCAAGATATCGAGCACGATTGGATGAAGCAGAGCTTTCTAAAACCGTGCCAGAGAACATATCTTTAGAGGTCTCATCTCCTGGTGTTGAACGTGTCGTTCGGATTCCCGACGAGCTGGATCGGTTCAAAGAAAGAGCAATGTATGTGAAATACACGAACGATGTAGTTACACCCAGTTCGTCCTCTGAGAGTGATGGCATTTTCAAGCTTGTGTCATTCGACATAGAAACAAGGTGCTGCATTTGGGGTTTAGCAGATGTGAGGATAAATAGAGAGAAGGCAGGAAAAGGAAGACCACTAAGCAAAAAACAAAGAGAGTGGCGTTTAGAGACTCCTTTCGATTCATTACGCTTGGTTAGACTGTATTCTGATTACTGA

Protein sequence

MVMITVRNFRLSAVPISSILPQSGFRSSLISSRNLPFPFVGHRFPSTSNNPLLLHARKKNSESEPVIKRNIVEEVSEDEEDDELFDELEDDEIMDDDGEDYFEEEFMEDNAEVYVGDGGEGGGISLAGTWWDKEALAMAEEVILSFHGDLKIYAFKTVSNSTVQVRIEKLSNKSGSPRMEDIEAFSSRYRARLDEAELSKTVPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYTNDVVTPSSSSESDGIFKLVSFDIETRCCIWGLADVRINREKAGKGRPLSKKQREWRLETPFDSLRLVRLYSDY

Homology

[Close]

BLAST of Cp4.1LG13g04110 vs. TrEMBL
Match: A0A0A0KDA0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G338150 PE=3 SV=1)

HSP 1 Score: 500.7 bits (1288), Expect = 1.2e-138
Identity = 261/311 (83.92%), Postives = 284/311 (91.32%), Query Frame = 1


Query: 1   MVMITVRNFRLSAVPIS-SILPQSGFRSSLISSRNLPFPFVGHRFPSTSNNPLLLHARKK 60
           M++IT  N  LSA+  S  ILP   FR S IS  NLPFPF+ HRFPSTSNN LLL ARK+
Sbjct: 1   MLLITAPNSALSALSSSLPILPHILFRCSSISPANLPFPFLDHRFPSTSNNSLLLRARKR 60

Query: 61  NSESEPVIKRNIVEEVSEDEEDDELFDELEDDEIMDDDGEDYFEEEFMEDNAEVYVGDGG 120
           NSES+PV+K+NIV+EVSEDEEDD LFDE E DEIM+DDGEDYFEEE+MEDNAEVY+GDGG
Sbjct: 61  NSESQPVLKQNIVQEVSEDEEDDVLFDEFEQDEIMEDDGEDYFEEEYMEDNAEVYLGDGG 120

Query: 121 EGGGISLAGTWWDKEALAMAEEVILSFHGDLKIYAFKTVSNSTVQVRIEKLSNKSGSPRM 180
           EGGGISLAGTWWDK+ALA+AEEVILSFHGDLKIYAFKTVSNSTVQVRIEKLS KSGSP M
Sbjct: 121 EGGGISLAGTWWDKQALAIAEEVILSFHGDLKIYAFKTVSNSTVQVRIEKLSTKSGSPNM 180

Query: 181 EDIEAFSSRYRARLDEAELSKTVPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYTN 240
           EDIEAFS+ YRARLD+AEL+K+VPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYTN
Sbjct: 181 EDIEAFSTTYRARLDDAELAKSVPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYTN 240

Query: 241 DVVTPSSSSESDGIFKLVSFDIETRCCIWGLADVRINREKAGKGRPLSKKQREWRLETPF 300
           +VVT SSSSESDG+FKLVSFDIE +CC WG+ADV+INREKAGKGRPLSKKQREWRLETPF
Sbjct: 241 EVVTASSSSESDGVFKLVSFDIEAKCCTWGIADVKINREKAGKGRPLSKKQREWRLETPF 300

Query: 301 DSLRLVRLYSD 311
           DSLRLVRLYSD
Sbjct: 301 DSLRLVRLYSD 311

[Close]

BLAST of Cp4.1LG13g04110 vs. TrEMBL
Match: E0CQP0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g15560 PE=4 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 1.1e-105
Identity = 206/314 (65.61%), Postives = 251/314 (79.94%), Query Frame = 1


Query: 1   MVMITVRNFRLSAVPISSILPQSGFRSSLISSRNLPFPFVGHRFPSTSNNPLLLHARKKN 60
           M +IT  N R SA+  S++  +S F +    + NL FPF  +  P  S      HA+K++
Sbjct: 1   MDLITTWNTRASAISFSALRSRSSFHNPSRQNHNLLFPFWPYPLPRISYKSFTAHAKKRS 60

Query: 61  SESEPVIKRNIVEEVS-EDEEDDELFDELEDDEIMDDDGE---DYFEEEFMEDNAEVYVG 120
           S+S+P++K+ IVE++S   ++DD L D+ ED+ +MDDD +   + +E+E++ D+AEVYVG
Sbjct: 61  SQSQPLVKQTIVEQISTSQQQDDLLLDDFEDEALMDDDDDNDDEDWEDEYLADDAEVYVG 120

Query: 121 DGGEGGGISLAGTWWDKEALAMAEEVILSFHGDLKIYAFKTVSNSTVQVRIEKLSNKSGS 180
           DGGEGGGISLAGTWWDKEAL MAEEV +SF GDLKIYAFKT++NST+QVRIEKLSNKSGS
Sbjct: 121 DGGEGGGISLAGTWWDKEALLMAEEVSMSFEGDLKIYAFKTLANSTIQVRIEKLSNKSGS 180

Query: 181 PRMEDIEAFSSRYRARLDEAELSKTVPENISLEVSSPGVERVVRIPDELDRFKERAMYVK 240
           P M DIEAFSS YRA+LDEAE++ +VPEN+SLEVSSPGVERVV+IP ELDRFKER MYVK
Sbjct: 181 PSMTDIEAFSSIYRAKLDEAEIAGSVPENLSLEVSSPGVERVVQIPQELDRFKERPMYVK 240

Query: 241 YTNDVVTPSSSSESDGIFKLVSFDIETRCCIWGLADVRINREKAGKGRPLSKKQREWRLE 300
           Y  + V P S+ ESDGIF+LVSFD+ET CC WGLADVRINR KAGKGRPLSKKQREWRL 
Sbjct: 241 YVTEGVAPGSTIESDGIFRLVSFDLETNCCTWGLADVRINRAKAGKGRPLSKKQREWRLN 300

Query: 301 TPFDSLRLVRLYSD 311
           TPFDSL LVRLYS+
Sbjct: 301 TPFDSLCLVRLYSE 314

[Close]

BLAST of Cp4.1LG13g04110 vs. TrEMBL
Match: A0A067L3N7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25228 PE=3 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 2.2e-103
Identity = 203/305 (66.56%), Postives = 244/305 (80.00%), Query Frame = 1


Query: 11  LSAVPISSILP--QSGFRSSLISSRNLPFPFVGHRFPSTSNNPLLLHARKKNSESEPVIK 70
           L  VPI S +P  +S      +S+ N PFP +   FP+       L A+K+NS+SEPV+K
Sbjct: 3   LIKVPIISTIPPTKSFLHRPSLSNHNFPFPILAQPFPAIQIKSYPLQAKKRNSQSEPVLK 62

Query: 71  RNIVEEVSEDEEDDE---LFDELEDDEIMDDDGEDYFEEEFMEDNAEVYVGDGGEGGGIS 130
             I+EEVSE++ED+E     DELED+ +MD + ED  E+EF+ED AE+YVGDG  GGGI+
Sbjct: 63  PTIIEEVSEEDEDEEEQLFLDELEDEALMDTEDED-LEDEFLEDEAELYVGDGTAGGGIA 122

Query: 131 LAGTWWDKEALAMAEEVILSFHGDLKIYAFKTVSNSTVQVRIEKLSNKSGSPRMEDIEAF 190
           LAGTWWDKEAL +AEEV  SF G+LKIYAFKT+SN T+QVRIE+L+NKSGSP MEDIEAF
Sbjct: 123 LAGTWWDKEALRIAEEVCESFDGELKIYAFKTLSNLTIQVRIERLTNKSGSPNMEDIEAF 182

Query: 191 SSRYRARLDEAELSKTVPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYTNDVVTPS 250
           S+ YR+RLDEAE++KT+  NI+LEVSSPGVERVVRIP+ELDRF +R MYVKY +D  T  
Sbjct: 183 STTYRSRLDEAEVAKTIANNIALEVSSPGVERVVRIPEELDRFNDRPMYVKYVSDAATLD 242

Query: 251 SSSESDGIFKLVSFDIETRCCIWGLADVRINREKAGKGRPLSKKQREWRLETPFDSLRLV 310
           SSSESDGIF+L+SFD+ET+CC WGLADVRINREKAGKGRPLSKKQREWRL TPF SL LV
Sbjct: 243 SSSESDGIFRLISFDMETKCCTWGLADVRINREKAGKGRPLSKKQREWRLNTPFHSLLLV 302

[Close]

BLAST of Cp4.1LG13g04110 vs. TrEMBL
Match: A0A061FH06_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_035449 PE=3 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 2.2e-103
Identity = 206/323 (63.78%), Postives = 255/323 (78.95%), Query Frame = 1


Query: 2   VMITVRNFRLSAVPISSILPQS-------GFRSSLISSRNLPFPFVGH---RFPSTSNNP 61
           ++++  NF+  AVPIS++LP          F     S+    FPF  +   R P+ S + 
Sbjct: 3   LLVSAWNFKHLAVPISALLPSPTAITCSCSFYKPPGSANKFSFPFWTYPFARIPNKSPSS 62

Query: 62  LLLHARKKNSESEPVIKRNIVEEVSEDEEDDE----LFDELEDDEIMDDDGEDYFEEEFM 121
           + +HARKKNS+SEP++K  IVEEVS D+ED E    LFD+ EDDE M D+ +DYFEEE++
Sbjct: 63  IAIHARKKNSKSEPLLKPTIVEEVSMDDEDKEEEQILFDDSEDDESMIDNDDDYFEEEYL 122

Query: 122 EDNAEVYVGDGGEGGGISLAGTWWDKEALAMAEEVILSFHGDLKIYAFKTVSNSTVQVRI 181
           ++  E+YVGDG  GGGISLAGTWWDKEALA+A++V LSF+GDL IYAFKT+SNS++QVRI
Sbjct: 123 DNETELYVGDGAGGGGISLAGTWWDKEALALAQDVCLSFNGDLGIYAFKTLSNSSIQVRI 182

Query: 182 EKLSNKSGSPRMEDIEAFSSRYRARLDEAELSKTVPENISLEVSSPGVERVVRIPDELDR 241
           E+L+NKSGSP MED+EAFS  YRARLDEAEL+++VP+NI+LEVSSPGVERVVR+P +LDR
Sbjct: 183 ERLTNKSGSPSMEDVEAFSVSYRARLDEAELARSVPQNITLEVSSPGVERVVRMPQDLDR 242

Query: 242 FKERAMYVKYTNDVVTPSSSSESDGIFKLVSFDIETRCCIWGLADVRINREKAGKGRPLS 301
           FK+R MYVKY   V    S SE DG+F+LV+FD+ET+CC WGLADVRINREKAGKGRPLS
Sbjct: 243 FKDRPMYVKYVT-VAESGSLSEGDGVFRLVTFDMETKCCTWGLADVRINREKAGKGRPLS 302

Query: 302 KKQREWRLETPFDSLRLVRLYSD 311
           KKQREW LET FDSLRLVRLYS+
Sbjct: 303 KKQREWCLETTFDSLRLVRLYSE 324

[Close]

BLAST of Cp4.1LG13g04110 vs. TrEMBL
Match: M5W4C9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008923mg PE=3 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 1.4e-102
Identity = 206/324 (63.58%), Postives = 252/324 (77.78%), Query Frame = 1


Query: 1   MVMITVRNFRLSAVPISSILPQSGF----RSSLISSRNL-------PFPFVGHRFPSTSN 60
           M + T  N R SAV +S I+ +       R SL     L       PFPF+ ++FP+   
Sbjct: 1   MDLTTTWNLRASAVSLSPIVTRRSRTHLQRPSLSPPPKLSCQFWAYPFPFIPNKFPA--- 60

Query: 61  NPLLLHARKKNSESEPVIKRNIVEEVSEDEEDDE--LFDELEDDEI-MDDDGEDYFEEEF 120
               LHAR +NSE EP++K  I+EEVSED++DD+  + D+ E+DE+ MDD+G+DY+EEE 
Sbjct: 61  ----LHARNRNSEPEPLLKPTIIEEVSEDDDDDDDVILDDFEEDEVSMDDEGDDYYEEE- 120

Query: 121 MEDNAEVYVGDGGEGGGISLAGTWWDKEALAMAEEVILSFHGDLKIYAFKTVSNSTVQVR 180
              +AE+Y GDGG GGGISLAG WWD +AL +AEEVILSF GDLKIYAFKT+ N T+QVR
Sbjct: 121 ---SAELYAGDGGGGGGISLAGVWWDNKALEIAEEVILSFDGDLKIYAFKTLPNFTIQVR 180

Query: 181 IEKLSNKSGSPRMEDIEAFSSRYRARLDEAELSKTVPENISLEVSSPGVERVVRIPDELD 240
           IEKLSN+SGSP MEDIEAFS  YRARLDEAEL+K++PEN+SLEVSSPGVER+VR+P ELD
Sbjct: 181 IEKLSNRSGSPSMEDIEAFSRTYRARLDEAELAKSLPENLSLEVSSPGVERIVRVPHELD 240

Query: 241 RFKERAMYVKYTNDVVTPSSSSESDGIFKLVSFDIETRCCIWGLADVRINREKAGKGRPL 300
           RFK+R MYVKY ++       SE+DG+F+LVSFD+ET+CC+WGLADVRINREKAGKGRPL
Sbjct: 241 RFKDRPMYVKYFSETAETGVISENDGVFRLVSFDVETKCCVWGLADVRINREKAGKGRPL 300

Query: 301 SKKQREWRLETPFDSLRLVRLYSD 311
           SKKQR+W+L TPFDSLRLVRLYSD
Sbjct: 301 SKKQRQWQLNTPFDSLRLVRLYSD 313

[Close]

BLAST of Cp4.1LG13g04110 vs. TAIR10
Match: AT1G77122.1 (AT1G77122.1 Uncharacterised protein family UPF0090)

HSP 1 Score: 311.2 bits (796), Expect = 7.1e-85
Identity = 181/314 (57.64%), Postives = 227/314 (72.29%), Query Frame = 1


Query: 11  LSAVPISSILPQSGFRSSLISSRNLPFPFVGHRFPSTSNNPLLLHARKKNSES--EPV-- 70
           L A  IS++   + FRS+     +L F F    F  T N     HA++KN  S  EP   
Sbjct: 19  LPAFSISNLSAVNRFRSTT----SLRFGFPATPFRRTPNFTFKTHAKRKNKTSTFEPKPN 78

Query: 71  -IKRNIVEEVSEDEEDDELF---------DELEDDEIMDDDGEDYFEEEFMEDNAEVYVG 130
            ++  I+EE  E+EE++E+          DEL  D+  D+D +D FE  F E   E+Y G
Sbjct: 79  KVEELIIEEEEEEEEEEEIVLPEEIQENQDELLLDDEYDEDDDDDFE--FDESEEELYAG 138

Query: 131 DGGEGGGISLAGTWWDKEALAMAEEVILSFHGDLKIYAFKTVSNSTVQVRIEKLSNKSGS 190
           DGG GGGI LAGT WDK ALA+A +V  SF GDL IYAFKT+ NST+QVRIE+L+NK GS
Sbjct: 139 DGGGGGGIKLAGTLWDKVALALAVKVCESFDGDLGIYAFKTLPNSTIQVRIERLTNKFGS 198

Query: 191 PRMEDIEAFSSRYRARLDEAELSKTVPENISLEVSSPGVERVVRIPDELDRFKERAMYVK 250
           P MEDIEAFS+ YRA+L EAEL+K++P+NISLEVSSPGVERVVRIP +LDR+K+R MYV+
Sbjct: 199 PTMEDIEAFSTIYRAKLAEAELAKSIPDNISLEVSSPGVERVVRIPQDLDRYKDRPMYVR 258

Query: 251 YTNDVVTPSSSSESDGIFKLVSFDIETRCCIWGLADVRINREKAGKGRPLSKKQREWRLE 310
           YTN+     + +E DGIF+LVSFD+E + CIWG+AD+R+NREKAGKGRPLSKKQREWRLE
Sbjct: 259 YTNE----DTETEGDGIFRLVSFDVEAKICIWGIADIRVNREKAGKGRPLSKKQREWRLE 318

[Close]

BLAST of Cp4.1LG13g04110 vs. TAIR10
Match: AT1G69210.1 (AT1G69210.1 Uncharacterised protein family UPF0090)

HSP 1 Score: 178.7 bits (452), Expect = 5.5e-45
Identity = 115/307 (37.46%), Postives = 175/307 (57.00%), Query Frame = 1


Query: 4   ITVRNFRLSAVPISSILPQSGFRSSLISSRNLPFPFVGHRFPSTSNNPLLLHARKKNSES 63
           I+VR F  S      +LP++  R +L   R  PF      F S+S++P       K + S
Sbjct: 26  ISVRTFSSSL-----LLPKTTTRLTL--PRYFPFSSSISTFSSSSSSPSPSARPPKTAGS 85

Query: 64  EPVIKRNIVEEVSEDEEDDELFDELEDDEIMDDDGEDYFEEEFMEDNAEVYVGDGGEGGG 123
                       + DEED   +   +D E+++D  ED       +++ E  +GDGG+GGG
Sbjct: 86  ------------NGDEEDTFEYKATDDVEVIEDWEEDE------DEDVESQLGDGGDGGG 145

Query: 124 ISLAGTWWDKEALAMAEEVILSFHGDLKIYAFKTVSNSTVQVRIEKLSNKSGSPRMEDIE 183
           I L G  W +  L++A +V+     DL+++AFKT     + VR++KLS + G P M+++E
Sbjct: 146 IVLKGVAWGERVLSIAAQVLKQSEKDLELFAFKTSPRGYIYVRLDKLSTEYGCPTMDELE 205

Query: 184 AFSSRYRARLDEAELSKTVPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYTNDVVT 243
            FS  ++ RLD+A   K +PE+++LEVSSPG ER++R+P++L RFK+  M V Y  +  T
Sbjct: 206 EFSREFKKRLDDAGAEKVIPEDLALEVSSPGAERLLRVPEDLPRFKDMPMTVSYVEE--T 265

Query: 244 PSSSSESDGIFKLVSFDIETRCCIWGLADVRINREKAGKGRPLSKKQREWRLETPFDSLR 303
            S  +   G+F L S D E+  C+W LADVR NR+   KGRPLS+KQ++ R+  PF   +
Sbjct: 266 NSRKAVKSGVFLLESIDAESDNCVWKLADVRENRDPESKGRPLSRKQKDLRITLPFADHK 305

Query: 304 LVRLYSD 311
            + LY D
Sbjct: 326 KINLYLD 305

[Close]

BLAST of Cp4.1LG13g04110 vs. NCBI nr
Match: gi|659081884|ref|XP_008441560.1| (PREDICTED: uncharacterized protein LOC103485652 isoform X3 [Cucumis melo])

HSP 1 Score: 505.0 bits (1299), Expect = 9.5e-140
Identity = 263/310 (84.84%), Postives = 281/310 (90.65%), Query Frame = 1


Query: 1   MVMITVRNFRLSAVPISSILPQSGFRSSLISSRNLPFPFVGHRFPSTSNNPLLLHARKKN 60
           M+ IT  N  LSAV     LP S FR S IS  NLPFPF+ HRFPSTSNN LLLHARK+N
Sbjct: 1   MLFITAPNSALSAVSTPPSLPHSVFRWSSISPTNLPFPFLDHRFPSTSNNSLLLHARKRN 60

Query: 61  SESEPVIKRNIVEEVSEDEEDDELFDELEDDEIMDDDGEDYFEEEFMEDNAEVYVGDGGE 120
           SES+PV+K NIV+EVSEDEEDD L DE E+DEIM+DDGEDYFEEE+MEDNAEVY GDGGE
Sbjct: 61  SESQPVLKPNIVQEVSEDEEDDVLVDEFEEDEIMEDDGEDYFEEEYMEDNAEVYEGDGGE 120

Query: 121 GGGISLAGTWWDKEALAMAEEVILSFHGDLKIYAFKTVSNSTVQVRIEKLSNKSGSPRME 180
           GGGISLAG WWDK+ALA+AEEVILSFHGDLKIYAFKTVSNSTVQVRIEKLSNKSGSP ME
Sbjct: 121 GGGISLAGIWWDKQALAIAEEVILSFHGDLKIYAFKTVSNSTVQVRIEKLSNKSGSPSME 180

Query: 181 DIEAFSSRYRARLDEAELSKTVPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYTND 240
           DIEAFS+ YRARLDEAEL+K+VPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYTND
Sbjct: 181 DIEAFSTTYRARLDEAELAKSVPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYTND 240

Query: 241 VVTPSSSSESDGIFKLVSFDIETRCCIWGLADVRINREKAGKGRPLSKKQREWRLETPFD 300
           VVT SSSSESDG+FKLVSFDIE +CC WG+ADV+INREKAGKGRPLSKKQREWRLETPFD
Sbjct: 241 VVTASSSSESDGVFKLVSFDIEAKCCTWGIADVKINREKAGKGRPLSKKQREWRLETPFD 300

Query: 301 SLRLVRLYSD 311
           SLRLVRLYSD
Sbjct: 301 SLRLVRLYSD 310

[Close]

BLAST of Cp4.1LG13g04110 vs. NCBI nr
Match: gi|449462174|ref|XP_004148816.1| (PREDICTED: uncharacterized protein LOC101204078 [Cucumis sativus])

HSP 1 Score: 500.7 bits (1288), Expect = 1.8e-138
Identity = 261/311 (83.92%), Postives = 284/311 (91.32%), Query Frame = 1


Query: 1   MVMITVRNFRLSAVPIS-SILPQSGFRSSLISSRNLPFPFVGHRFPSTSNNPLLLHARKK 60
           M++IT  N  LSA+  S  ILP   FR S IS  NLPFPF+ HRFPSTSNN LLL ARK+
Sbjct: 1   MLLITAPNSALSALSSSLPILPHILFRCSSISPANLPFPFLDHRFPSTSNNSLLLRARKR 60

Query: 61  NSESEPVIKRNIVEEVSEDEEDDELFDELEDDEIMDDDGEDYFEEEFMEDNAEVYVGDGG 120
           NSES+PV+K+NIV+EVSEDEEDD LFDE E DEIM+DDGEDYFEEE+MEDNAEVY+GDGG
Sbjct: 61  NSESQPVLKQNIVQEVSEDEEDDVLFDEFEQDEIMEDDGEDYFEEEYMEDNAEVYLGDGG 120

Query: 121 EGGGISLAGTWWDKEALAMAEEVILSFHGDLKIYAFKTVSNSTVQVRIEKLSNKSGSPRM 180
           EGGGISLAGTWWDK+ALA+AEEVILSFHGDLKIYAFKTVSNSTVQVRIEKLS KSGSP M
Sbjct: 121 EGGGISLAGTWWDKQALAIAEEVILSFHGDLKIYAFKTVSNSTVQVRIEKLSTKSGSPNM 180

Query: 181 EDIEAFSSRYRARLDEAELSKTVPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYTN 240
           EDIEAFS+ YRARLD+AEL+K+VPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYTN
Sbjct: 181 EDIEAFSTTYRARLDDAELAKSVPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYTN 240

Query: 241 DVVTPSSSSESDGIFKLVSFDIETRCCIWGLADVRINREKAGKGRPLSKKQREWRLETPF 300
           +VVT SSSSESDG+FKLVSFDIE +CC WG+ADV+INREKAGKGRPLSKKQREWRLETPF
Sbjct: 241 EVVTASSSSESDGVFKLVSFDIEAKCCTWGIADVKINREKAGKGRPLSKKQREWRLETPF 300

Query: 301 DSLRLVRLYSD 311
           DSLRLVRLYSD
Sbjct: 301 DSLRLVRLYSD 311

[Close]

BLAST of Cp4.1LG13g04110 vs. NCBI nr
Match: gi|659081880|ref|XP_008441558.1| (PREDICTED: uncharacterized protein LOC103485652 isoform X1 [Cucumis melo])

HSP 1 Score: 498.0 bits (1281), Expect = 1.2e-137
Identity = 263/317 (82.97%), Postives = 281/317 (88.64%), Query Frame = 1


Query: 1   MVMITVRNFRLSAVPISSILPQSGFRSSLISSRNLPFPFVGHRFPSTSNNPLLLHARKKN 60
           M+ IT  N  LSAV     LP S FR S IS  NLPFPF+ HRFPSTSNN LLLHARK+N
Sbjct: 1   MLFITAPNSALSAVSTPPSLPHSVFRWSSISPTNLPFPFLDHRFPSTSNNSLLLHARKRN 60

Query: 61  SESEPVIKRNIVEEVSEDEEDDELFDELED-------DEIMDDDGEDYFEEEFMEDNAEV 120
           SES+PV+K NIV+EVSEDEEDD L DE E+       DEIM+DDGEDYFEEE+MEDNAEV
Sbjct: 61  SESQPVLKPNIVQEVSEDEEDDVLVDEFEEGHVLDSVDEIMEDDGEDYFEEEYMEDNAEV 120

Query: 121 YVGDGGEGGGISLAGTWWDKEALAMAEEVILSFHGDLKIYAFKTVSNSTVQVRIEKLSNK 180
           Y GDGGEGGGISLAG WWDK+ALA+AEEVILSFHGDLKIYAFKTVSNSTVQVRIEKLSNK
Sbjct: 121 YEGDGGEGGGISLAGIWWDKQALAIAEEVILSFHGDLKIYAFKTVSNSTVQVRIEKLSNK 180

Query: 181 SGSPRMEDIEAFSSRYRARLDEAELSKTVPENISLEVSSPGVERVVRIPDELDRFKERAM 240
           SGSP MEDIEAFS+ YRARLDEAEL+K+VPENISLEVSSPGVERVVRIPDELDRFKERAM
Sbjct: 181 SGSPSMEDIEAFSTTYRARLDEAELAKSVPENISLEVSSPGVERVVRIPDELDRFKERAM 240

Query: 241 YVKYTNDVVTPSSSSESDGIFKLVSFDIETRCCIWGLADVRINREKAGKGRPLSKKQREW 300
           YVKYTNDVVT SSSSESDG+FKLVSFDIE +CC WG+ADV+INREKAGKGRPLSKKQREW
Sbjct: 241 YVKYTNDVVTASSSSESDGVFKLVSFDIEAKCCTWGIADVKINREKAGKGRPLSKKQREW 300

Query: 301 RLETPFDSLRLVRLYSD 311
           RLETPFDSLRLVRLYSD
Sbjct: 301 RLETPFDSLRLVRLYSD 317

[Close]

BLAST of Cp4.1LG13g04110 vs. NCBI nr
Match: gi|225457765|ref|XP_002264003.1| (PREDICTED: uncharacterized protein LOC100266148 [Vitis vinifera])

HSP 1 Score: 391.3 bits (1004), Expect = 1.5e-105
Identity = 206/314 (65.61%), Postives = 251/314 (79.94%), Query Frame = 1


Query: 1   MVMITVRNFRLSAVPISSILPQSGFRSSLISSRNLPFPFVGHRFPSTSNNPLLLHARKKN 60
           M +IT  N R SA+  S++  +S F +    + NL FPF  +  P  S      HA+K++
Sbjct: 1   MDLITTWNTRASAISFSALRSRSSFHNPSRQNHNLLFPFWPYPLPRISYKSFTAHAKKRS 60

Query: 61  SESEPVIKRNIVEEVS-EDEEDDELFDELEDDEIMDDDGE---DYFEEEFMEDNAEVYVG 120
           S+S+P++K+ IVE++S   ++DD L D+ ED+ +MDDD +   + +E+E++ D+AEVYVG
Sbjct: 61  SQSQPLVKQTIVEQISTSQQQDDLLLDDFEDEALMDDDDDNDDEDWEDEYLADDAEVYVG 120

Query: 121 DGGEGGGISLAGTWWDKEALAMAEEVILSFHGDLKIYAFKTVSNSTVQVRIEKLSNKSGS 180
           DGGEGGGISLAGTWWDKEAL MAEEV +SF GDLKIYAFKT++NST+QVRIEKLSNKSGS
Sbjct: 121 DGGEGGGISLAGTWWDKEALLMAEEVSMSFEGDLKIYAFKTLANSTIQVRIEKLSNKSGS 180

Query: 181 PRMEDIEAFSSRYRARLDEAELSKTVPENISLEVSSPGVERVVRIPDELDRFKERAMYVK 240
           P M DIEAFSS YRA+LDEAE++ +VPEN+SLEVSSPGVERVV+IP ELDRFKER MYVK
Sbjct: 181 PSMTDIEAFSSIYRAKLDEAEIAGSVPENLSLEVSSPGVERVVQIPQELDRFKERPMYVK 240

Query: 241 YTNDVVTPSSSSESDGIFKLVSFDIETRCCIWGLADVRINREKAGKGRPLSKKQREWRLE 300
           Y  + V P S+ ESDGIF+LVSFD+ET CC WGLADVRINR KAGKGRPLSKKQREWRL 
Sbjct: 241 YVTEGVAPGSTIESDGIFRLVSFDLETNCCTWGLADVRINRAKAGKGRPLSKKQREWRLN 300

Query: 301 TPFDSLRLVRLYSD 311
           TPFDSL LVRLYS+
Sbjct: 301 TPFDSLCLVRLYSE 314

[Close]

BLAST of Cp4.1LG13g04110 vs. NCBI nr
Match: gi|802559243|ref|XP_012066077.1| (PREDICTED: uncharacterized protein LOC105629153 [Jatropha curcas])

HSP 1 Score: 383.6 bits (984), Expect = 3.2e-103
Identity = 203/305 (66.56%), Postives = 244/305 (80.00%), Query Frame = 1


Query: 11  LSAVPISSILP--QSGFRSSLISSRNLPFPFVGHRFPSTSNNPLLLHARKKNSESEPVIK 70
           L  VPI S +P  +S      +S+ N PFP +   FP+       L A+K+NS+SEPV+K
Sbjct: 3   LIKVPIISTIPPTKSFLHRPSLSNHNFPFPILAQPFPAIQIKSYPLQAKKRNSQSEPVLK 62

Query: 71  RNIVEEVSEDEEDDE---LFDELEDDEIMDDDGEDYFEEEFMEDNAEVYVGDGGEGGGIS 130
             I+EEVSE++ED+E     DELED+ +MD + ED  E+EF+ED AE+YVGDG  GGGI+
Sbjct: 63  PTIIEEVSEEDEDEEEQLFLDELEDEALMDTEDED-LEDEFLEDEAELYVGDGTAGGGIA 122

Query: 131 LAGTWWDKEALAMAEEVILSFHGDLKIYAFKTVSNSTVQVRIEKLSNKSGSPRMEDIEAF 190
           LAGTWWDKEAL +AEEV  SF G+LKIYAFKT+SN T+QVRIE+L+NKSGSP MEDIEAF
Sbjct: 123 LAGTWWDKEALRIAEEVCESFDGELKIYAFKTLSNLTIQVRIERLTNKSGSPNMEDIEAF 182

Query: 191 SSRYRARLDEAELSKTVPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYTNDVVTPS 250
           S+ YR+RLDEAE++KT+  NI+LEVSSPGVERVVRIP+ELDRF +R MYVKY +D  T  
Sbjct: 183 STTYRSRLDEAEVAKTIANNIALEVSSPGVERVVRIPEELDRFNDRPMYVKYVSDAATLD 242

Query: 251 SSSESDGIFKLVSFDIETRCCIWGLADVRINREKAGKGRPLSKKQREWRLETPFDSLRLV 310
           SSSESDGIF+L+SFD+ET+CC WGLADVRINREKAGKGRPLSKKQREWRL TPF SL LV
Sbjct: 243 SSSESDGIFRLISFDMETKCCTWGLADVRINREKAGKGRPLSKKQREWRLNTPFHSLLLV 302

The following BLAST results are available for this feature:

BLAST of Cp4.1LG13g04110 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG13g04110 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDA0_CUCSA	1.2e-138	83.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G338150 PE=3 SV=1	[more]
E0CQP0_VITVI	1.1e-105	65.61	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g15560 PE=4 SV=...	[more]
A0A067L3N7_JATCU	2.2e-103	66.56	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25228 PE=3 SV=1	[more]
A0A061FH06_THECC	2.2e-103	63.78	Uncharacterized protein OS=Theobroma cacao GN=TCM_035449 PE=3 SV=1	[more]
M5W4C9_PRUPE	1.4e-102	63.58	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008923mg PE=3 SV=1	[more]

BLAST of Cp4.1LG13g04110 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G77122.1	7.1e-85	57.64	Uncharacterised protein family UPF0090	[more]
AT1G69210.1	5.5e-45	37.46	Uncharacterised protein family UPF0090	[more]

BLAST of Cp4.1LG13g04110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081884\|ref\|XP_008441560.1\|	9.5e-140	84.84	PREDICTED: uncharacterized protein LOC103485652 isoform X3 [Cucumis melo]	[more]
gi\|449462174\|ref\|XP_004148816.1\|	1.8e-138	83.92	PREDICTED: uncharacterized protein LOC101204078 [Cucumis sativus]	[more]
gi\|659081880\|ref\|XP_008441558.1\|	1.2e-137	82.97	PREDICTED: uncharacterized protein LOC103485652 isoform X1 [Cucumis melo]	[more]
gi\|225457765\|ref\|XP_002264003.1\|	1.5e-105	65.61	PREDICTED: uncharacterized protein LOC100266148 [Vitis vinifera]	[more]
gi\|802559243\|ref\|XP_012066077.1\|	3.2e-103	66.56	PREDICTED: uncharacterized protein LOC105629153 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0042274	ribosomal small subunit biogenesis

Vocabulary: **INTERPRO**
Term	Definition
IPR003728	Ribosome_maturation_RimP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042274	ribosomal small subunit biogenesis
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004185	serine-type carboxypeptidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG13g04110.1	Cp4.1LG13g04110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003728	Ribosome maturation factor RimP	HAMAP	MF_01077	RimP	coord: 133..311 score: 11
IPR003728	Ribosome maturation factor RimP	PFAM	PF02576	DUF150	coord: 155..241 score: 9.8
None	No IPR available	PANTHER	PTHR34544	FAMILY NOT NAMED	coord: 1..311 score: 4.5E
None	No IPR available	PANTHER	PTHR34544:SF2	SUBFAMILY NOT NAMED	coord: 1..311 score: 4.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG13g04110	Cucsa.077070	Cucumber (Gy14) v1	cgycpeB0127
Cp4.1LG13g04110	CmaCh15G006240	Cucurbita maxima (Rimu)	cmacpeB305
Cp4.1LG13g04110	CmoCh15G006300	Cucurbita moschata (Rifu)	cmocpeB268
Cp4.1LG13g04110	Cla013859	Watermelon (97103) v1	cpewmB170
Cp4.1LG13g04110	Csa6G338150	Cucumber (Chinese Long) v2	cpecuB200
Cp4.1LG13g04110	MELO3C008408	Melon (DHL92) v3.5.1	cpemeB168
Cp4.1LG13g04110	ClCG08G006460	Watermelon (Charleston Gray)	cpewcgB180
Cp4.1LG13g04110	CSPI06G18100	Wild cucumber (PI 183967)	cpecpiB201
Cp4.1LG13g04110	Lsi08G005230	Bottle gourd (USVL1VR-Ls)	cpelsiB158
Cp4.1LG13g04110	MELO3C008408.2	Melon (DHL92) v3.6.1	cpemedB200
Cp4.1LG13g04110	CsaV3_6G030960	Cucumber (Chinese Long) v3	cpecucB0240
Cp4.1LG13g04110	Bhi04G001418	Wax gourd	cpewgoB0252
Cp4.1LG13g04110	CsGy6G017560	Cucumber (Gy14) v2	cgybcpeB743
Cp4.1LG13g04110	Carg01583	Silver-seed gourd	carcpeB1157

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG13g04110	Cucurbita pepo (Zucchini)	cpecpeB199
Cp4.1LG13g04110	Cucurbita pepo (Zucchini)	cpecpeB228
Cp4.1LG13g04110	Cucurbita maxima (Rimu)	cmacpeB033
Cp4.1LG13g04110	Cucurbita maxima (Rimu)	cmacpeB705
Cp4.1LG13g04110	Cucurbita moschata (Rifu)	cmocpeB009
Cp4.1LG13g04110	Cucurbita moschata (Rifu)	cmocpeB657
Cp4.1LG13g04110	Cucumber (Gy14) v2	cgybcpeB740
Cp4.1LG13g04110	Silver-seed gourd	carcpeB0095
Cp4.1LG13g04110	Cucumber (Chinese Long) v3	cpecucB0237