CmoCh15G006300 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh15G006300
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRibosome maturation factor RimP
LocationCmo_Chr15 : 3053207 .. 3055915 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAACATATAGTTGAATTGACATGCAATTATCCCCATTTGTTGGATTGCGCCTCTGCGGAGCGGCCGCCATAGCAGCTGTCTGTTGTGAGCTTCATCATTCCCAGTTTTCCAGTTTCCTCCGTTAAGAGAAGTGATGGTCATGATTACTGTCCGTAATTTCAGACTCTCTGCAGTTCCAATTTCATCAATCCTTCCACAGAGTGGCTTCCGTTCGTCCTTAATCTCGCCGAGAAATCTTCCCTTCCCATTTGTTGGCCATCGGTTTCCATCTACGTCGAACAATCCCTTATTACTTCATGCCAGAAAGAAAAACTCAGAATCAGAGCCAGTTATCAAACGAAACATCGTCGAGGAAGTGTCGGAGGACGAAGAAGACGATGAACTTCTCGACGAACTTGAAGACGGTAAGATCCATTAATAAAACCTTCGCTCAATTTATTCCTCTAGTTTCTATTGAATCCTAGTTTAGACTGGTCTTGGAATGAGTAAATTTCGGGGAACTTTCTTGATTGCGTAGATGAGATAATGGACGATGATGGCGAAGATTACTTTGAAGAAGAGTTTATGGAGGATAATGCTGAAGTCTATGTAAGATTCTTGCCTCTAAACATGGAGATATTGTGTTGGAAATCTTAACTGAAATTCTGGATTTGATAATTTGATTTGAAGGTAGGGGATGGCGGGGAAGGAGGTGGAATTTCCCTTGCTGGGACATGGTGGGATAAAGAAGCACTGGCTATGGCTGAAGAGGTTATTCTTTCATTTGATGGCGACTTGAAGATTTATGCTTTCAAAACAGTCTCTAATTCCACTGTTCAAGTGCGTATTGAAAAGCTTTCTAACAAGTAAGTTTTTACATTCTATGAACACATATTAGACTGTGGTTTTGGTTTTCTTGTAAGATAATAACTTCTTGTTGCTGCTTTCTTAAGAATGAAATGCCGTCTGCTAGCTCCTTCTTTCTCAAACGGATTGTTTGAGTGATGTTGATATTAGAAAATATTAGGATTTCTAATCGTAGATTTCGCTTGCTCACAAATTAAGGGAGAGAGTTCACGTTAGAGATTTAAGACGGACGTGTTTGGAATGACTTTCTAAGAGCTTAAAAATATGTTTGTAAACACTTGAAAAATCATTTCAAACAAGCTCTTATACGAGTTCAGCCGCTTCATATGGGTTAGATCCAATACGAGTTCAACCTGTACCTATCTTTTAAGCTGGAAATGGAGATGCCTTTTGCTTTCAAGTAAATCAAGAGAGCCATTAATTACCTTTTGGCTTCAAGTTTTCCTTCTGATATTAGTGTTCTCACTGACCCGTATTCACAACTCGACTCAGAGAAGAATCGGATTTCTTCGAACTCCTTATTGCTTGAATTATCACATTAATTCGAAGGATTTCCAGATATTAAGGACGTTTCGAGTTGAAGTCTACTTTAAGCATATGAAAATGTGTTATATTTTACATGTTATCCCAAGTTTACTGTTGGTGCATGCGTTCTTGGTAAGACTGAGTACCATTTCCTAGGTTCTAATTCCCAACAATGCACCTCAGATCGGGTTCCCCCAGGATGGAAGATATCGAGGCTTTCTCTTCAAGATATCGAGCACGATTGGATGAAGCAGAGCTTTCTAAAACCGTGCCAGAGAACATATCTTTAGAGGTATGCTGCCTGTTTCCTTGCTCAAATTCCCTCGTTTCTTTTTTTTCTATATCATCAACCAATCTATCTTTAGCAATTAGAAGAAGATTTTCACTTACATTATTCAATTTAGTTTCCCACTTGACAAGAGCAAAAGAGAGTTGCTCTACTCTGTTAGCTTTTGGGTCTAAATGGATTTTAATCCTTCCAACATTATAAGGTCTCATCTCCTGGTGTTGAACGCGTCGTTCGGATTCCCGATGAGCTGGATCGGTTCAAAGAAAGAGCAATGTATGTGAAATACACGAACGATGTAGTTACACCCAGTTCGTCCTCTGAGAGTGATGGCATTTTCAAGCTTGTGTCATTCAACATAGAAACAAGGTGCTGCGTTTGGGGTTTAGCAGATGTGAGGATAAATAGAGAGAAGGCAGGAAAAGGAAGACCACTAAGCAAAAAACAAAGAGAGTGGCGTTTAGAGACTCCTTTCGATTCATTACGCTTGGTTAGACTGTATTCTGATTACTGATAATGCAATCAAATTTTGGTCGAAATTCAAGGTGTCGGTGTATAGTAAACTAGTAATTATTATCTTATGAACGTATGATTCGTTTTTAATGCTATTCTCTATCTAAACACATTTTGAATACAAATTTTGTAAGATAAACGCTTAATAGTTTTTGGATTGAGTTGGTCTGGTCAACATGAACATTGATATGCATGTATTATACTTATTTGTTGTCAAATTGTTCTGATTGTATTGGTTGAATTATGAAACTTTATCTGTACTGTAATGGCATTGACTGAGGCACTCCTGGTTTGGTCCCTGCTAGAAAACGACCAATCAGTCTCTTTACCCGCGTGATGAATGAAAAACGGCTCCTTTTGTCGACACCTTTAGCTTTCTAACAATATGCTGTTTCTATACTATCTTCGTGACTTCACTTATTCATTACATGCACTGTACTTAGTTACCAAAAATATGCATCATTTTACTCATTTATTTCTTGTTGTTTTTCACTTAACTTTTCTGTTTTTGGTGTGTTAGGAAGTCATACAATTGTAA

mRNA sequence

GAAACATATAGTTGAATTGACATGCAATTATCCCCATTTGTTGGATTGCGCCTCTGCGGAGCGGCCGCCATAGCAGCTGTCTGTTGTGAGCTTCATCATTCCCAGTTTTCCAGTTTCCTCCGTTAAGAGAAGTGATGGTCATGATTACTGTCCGTAATTTCAGACTCTCTGCAGTTCCAATTTCATCAATCCTTCCACAGAGTGGCTTCCGTTCGTCCTTAATCTCGCCGAGAAATCTTCCCTTCCCATTTGTTGGCCATCGGTTTCCATCTACGTCGAACAATCCCTTATTACTTCATGCCAGAAAGAAAAACTCAGAATCAGAGCCAGTTATCAAACGAAACATCGTCGAGGAAGTGTCGGAGGACGAAGAAGACGATGAACTTCTCGACGAACTTGAAGACGATGAGATAATGGACGATGATGGCGAAGATTACTTTGAAGAAGAGTTTATGGAGGATAATGCTGAAGTCTATGTAGGGGATGGCGGGGAAGGAGGTGGAATTTCCCTTGCTGGGACATGGTGGGATAAAGAAGCACTGGCTATGGCTGAAGAGGTTATTCTTTCATTTGATGGCGACTTGAAGATTTATGCTTTCAAAACAGTCTCTAATTCCACTGTTCAAGTGCGTATTGAAAAGCTTTCTAACAAATCGGGTTCCCCCAGGATGGAAGATATCGAGGCTTTCTCTTCAAGATATCGAGCACGATTGGATGAAGCAGAGCTTTCTAAAACCGTGCCAGAGAACATATCTTTAGAGGTCTCATCTCCTGGTGTTGAACGCGTCGTTCGGATTCCCGATGAGCTGGATCGGTTCAAAGAAAGAGCAATGTATGTGAAATACACGAACGATGTAGTTACACCCAGTTCGTCCTCTGAGAGTGATGGCATTTTCAAGCTTGTGTCATTCAACATAGAAACAAGGTGCTGCGTTTGGGGTTTAGCAGATGTGAGGATAAATAGAGAGAAGGCAGGAAAAGGAAGACCACTAAGCAAAAAACAAAGAGAGTGGCGTTTAGAGACTCCTTTCGATTCATTACGCTTGGAAGTCATACAATTGTAA

Coding sequence (CDS)

ATGGTCATGATTACTGTCCGTAATTTCAGACTCTCTGCAGTTCCAATTTCATCAATCCTTCCACAGAGTGGCTTCCGTTCGTCCTTAATCTCGCCGAGAAATCTTCCCTTCCCATTTGTTGGCCATCGGTTTCCATCTACGTCGAACAATCCCTTATTACTTCATGCCAGAAAGAAAAACTCAGAATCAGAGCCAGTTATCAAACGAAACATCGTCGAGGAAGTGTCGGAGGACGAAGAAGACGATGAACTTCTCGACGAACTTGAAGACGATGAGATAATGGACGATGATGGCGAAGATTACTTTGAAGAAGAGTTTATGGAGGATAATGCTGAAGTCTATGTAGGGGATGGCGGGGAAGGAGGTGGAATTTCCCTTGCTGGGACATGGTGGGATAAAGAAGCACTGGCTATGGCTGAAGAGGTTATTCTTTCATTTGATGGCGACTTGAAGATTTATGCTTTCAAAACAGTCTCTAATTCCACTGTTCAAGTGCGTATTGAAAAGCTTTCTAACAAATCGGGTTCCCCCAGGATGGAAGATATCGAGGCTTTCTCTTCAAGATATCGAGCACGATTGGATGAAGCAGAGCTTTCTAAAACCGTGCCAGAGAACATATCTTTAGAGGTCTCATCTCCTGGTGTTGAACGCGTCGTTCGGATTCCCGATGAGCTGGATCGGTTCAAAGAAAGAGCAATGTATGTGAAATACACGAACGATGTAGTTACACCCAGTTCGTCCTCTGAGAGTGATGGCATTTTCAAGCTTGTGTCATTCAACATAGAAACAAGGTGCTGCGTTTGGGGTTTAGCAGATGTGAGGATAAATAGAGAGAAGGCAGGAAAAGGAAGACCACTAAGCAAAAAACAAAGAGAGTGGCGTTTAGAGACTCCTTTCGATTCATTACGCTTGGAAGTCATACAATTGTAA
Homology
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BLAST of CmoCh15G006300 vs. TrEMBL
Match: A0A0A0KDA0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G338150 PE=3 SV=1)

HSP 1 Score: 484.6 bits (1246), Expect = 9.2e-134
Identity = 253/305 (82.95%), Postives = 277/305 (90.82%), Query Frame = 1 

Query: 1   MVMITVRNFRLSAVPIS-SILPQSGFRSSLISPRNLPFPFVGHRFPSTSNNPLLLHARKK 60
           M++IT  N  LSA+  S  ILP   FR S ISP NLPFPF+ HRFPSTSNN LLL ARK+
Sbjct: 1   MLLITAPNSALSALSSSLPILPHILFRCSSISPANLPFPFLDHRFPSTSNNSLLLRARKR 60

Query: 61  NSESEPVIKRNIVEEVSEDEEDDELLDELEDDEIMDDDGEDYFEEEFMEDNAEVYVGDGG 120
           NSES+PV+K+NIV+EVSEDEEDD L DE E DEIM+DDGEDYFEEE+MEDNAEVY+GDGG
Sbjct: 61  NSESQPVLKQNIVQEVSEDEEDDVLFDEFEQDEIMEDDGEDYFEEEYMEDNAEVYLGDGG 120

Query: 121 EGGGISLAGTWWDKEALAMAEEVILSFDGDLKIYAFKTVSNSTVQVRIEKLSNKSGSPRM 180
           EGGGISLAGTWWDK+ALA+AEEVILSF GDLKIYAFKTVSNSTVQVRIEKLS KSGSP M
Sbjct: 121 EGGGISLAGTWWDKQALAIAEEVILSFHGDLKIYAFKTVSNSTVQVRIEKLSTKSGSPNM 180

Query: 181 EDIEAFSSRYRARLDEAELSKTVPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYTN 240
           EDIEAFS+ YRARLD+AEL+K+VPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYTN
Sbjct: 181 EDIEAFSTTYRARLDDAELAKSVPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYTN 240

Query: 241 DVVTPSSSSESDGIFKLVSFNIETRCCVWGLADVRINREKAGKGRPLSKKQREWRLETPF 300
           +VVT SSSSESDG+FKLVSF+IE +CC WG+ADV+INREKAGKGRPLSKKQREWRLETPF
Sbjct: 241 EVVTASSSSESDGVFKLVSFDIEAKCCTWGIADVKINREKAGKGRPLSKKQREWRLETPF 300

Query: 301 DSLRL 305
           DSLRL
Sbjct: 301 DSLRL 305

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BLAST of CmoCh15G006300 vs. TrEMBL
Match: E0CQP0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g15560 PE=4 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 1.9e-102
Identity = 201/308 (65.26%), Postives = 246/308 (79.87%), Query Frame = 1 

Query: 1   MVMITVRNFRLSAVPISSILPQSGFRSSLISPRNLPFPFVGHRFPSTSNNPLLLHARKKN 60
           M +IT  N R SA+  S++  +S F +      NL FPF  +  P  S      HA+K++
Sbjct: 1   MDLITTWNTRASAISFSALRSRSSFHNPSRQNHNLLFPFWPYPLPRISYKSFTAHAKKRS 60

Query: 61  SESEPVIKRNIVEEVS-EDEEDDELLDELEDDEIMDDDGE---DYFEEEFMEDNAEVYVG 120
           S+S+P++K+ IVE++S   ++DD LLD+ ED+ +MDDD +   + +E+E++ D+AEVYVG
Sbjct: 61  SQSQPLVKQTIVEQISTSQQQDDLLLDDFEDEALMDDDDDNDDEDWEDEYLADDAEVYVG 120

Query: 121 DGGEGGGISLAGTWWDKEALAMAEEVILSFDGDLKIYAFKTVSNSTVQVRIEKLSNKSGS 180
           DGGEGGGISLAGTWWDKEAL MAEEV +SF+GDLKIYAFKT++NST+QVRIEKLSNKSGS
Sbjct: 121 DGGEGGGISLAGTWWDKEALLMAEEVSMSFEGDLKIYAFKTLANSTIQVRIEKLSNKSGS 180

Query: 181 PRMEDIEAFSSRYRARLDEAELSKTVPENISLEVSSPGVERVVRIPDELDRFKERAMYVK 240
           P M DIEAFSS YRA+LDEAE++ +VPEN+SLEVSSPGVERVV+IP ELDRFKER MYVK
Sbjct: 181 PSMTDIEAFSSIYRAKLDEAEIAGSVPENLSLEVSSPGVERVVQIPQELDRFKERPMYVK 240

Query: 241 YTNDVVTPSSSSESDGIFKLVSFNIETRCCVWGLADVRINREKAGKGRPLSKKQREWRLE 300
           Y  + V P S+ ESDGIF+LVSF++ET CC WGLADVRINR KAGKGRPLSKKQREWRL 
Sbjct: 241 YVTEGVAPGSTIESDGIFRLVSFDLETNCCTWGLADVRINRAKAGKGRPLSKKQREWRLN 300

Query: 301 TPFDSLRL 305
           TPFDSL L
Sbjct: 301 TPFDSLCL 308

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BLAST of CmoCh15G006300 vs. TrEMBL
Match: A0A067L3N7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25228 PE=3 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 1.0e-100
Identity = 199/299 (66.56%), Postives = 239/299 (79.93%), Query Frame = 1 

Query: 11  LSAVPISSILP--QSGFRSSLISPRNLPFPFVGHRFPSTSNNPLLLHARKKNSESEPVIK 70
           L  VPI S +P  +S      +S  N PFP +   FP+       L A+K+NS+SEPV+K
Sbjct: 3   LIKVPIISTIPPTKSFLHRPSLSNHNFPFPILAQPFPAIQIKSYPLQAKKRNSQSEPVLK 62

Query: 71  RNIVEEVSEDEEDDE---LLDELEDDEIMDDDGEDYFEEEFMEDNAEVYVGDGGEGGGIS 130
             I+EEVSE++ED+E    LDELED+ +MD + ED  E+EF+ED AE+YVGDG  GGGI+
Sbjct: 63  PTIIEEVSEEDEDEEEQLFLDELEDEALMDTEDED-LEDEFLEDEAELYVGDGTAGGGIA 122

Query: 131 LAGTWWDKEALAMAEEVILSFDGDLKIYAFKTVSNSTVQVRIEKLSNKSGSPRMEDIEAF 190
           LAGTWWDKEAL +AEEV  SFDG+LKIYAFKT+SN T+QVRIE+L+NKSGSP MEDIEAF
Sbjct: 123 LAGTWWDKEALRIAEEVCESFDGELKIYAFKTLSNLTIQVRIERLTNKSGSPNMEDIEAF 182

Query: 191 SSRYRARLDEAELSKTVPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYTNDVVTPS 250
           S+ YR+RLDEAE++KT+  NI+LEVSSPGVERVVRIP+ELDRF +R MYVKY +D  T  
Sbjct: 183 STTYRSRLDEAEVAKTIANNIALEVSSPGVERVVRIPEELDRFNDRPMYVKYVSDAATLD 242

Query: 251 SSSESDGIFKLVSFNIETRCCVWGLADVRINREKAGKGRPLSKKQREWRLETPFDSLRL 305
           SSSESDGIF+L+SF++ET+CC WGLADVRINREKAGKGRPLSKKQREWRL TPF SL L
Sbjct: 243 SSSESDGIFRLISFDMETKCCTWGLADVRINREKAGKGRPLSKKQREWRLNTPFHSLLL 300

[Close]
BLAST of CmoCh15G006300 vs. TrEMBL
Match: M5W4C9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008923mg PE=3 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 1.0e-100
Identity = 203/318 (63.84%), Postives = 249/318 (78.30%), Query Frame = 1 

Query: 1   MVMITVRNFRLSAVPISSILPQSGF----RSSLISPRNL-------PFPFVGHRFPSTSN 60
           M + T  N R SAV +S I+ +       R SL  P  L       PFPF+ ++FP+   
Sbjct: 1   MDLTTTWNLRASAVSLSPIVTRRSRTHLQRPSLSPPPKLSCQFWAYPFPFIPNKFPA--- 60

Query: 61  NPLLLHARKKNSESEPVIKRNIVEEVSEDEEDDE--LLDELEDDEI-MDDDGEDYFEEEF 120
               LHAR +NSE EP++K  I+EEVSED++DD+  +LD+ E+DE+ MDD+G+DY+EEE 
Sbjct: 61  ----LHARNRNSEPEPLLKPTIIEEVSEDDDDDDDVILDDFEEDEVSMDDEGDDYYEEE- 120

Query: 121 MEDNAEVYVGDGGEGGGISLAGTWWDKEALAMAEEVILSFDGDLKIYAFKTVSNSTVQVR 180
              +AE+Y GDGG GGGISLAG WWD +AL +AEEVILSFDGDLKIYAFKT+ N T+QVR
Sbjct: 121 ---SAELYAGDGGGGGGISLAGVWWDNKALEIAEEVILSFDGDLKIYAFKTLPNFTIQVR 180

Query: 181 IEKLSNKSGSPRMEDIEAFSSRYRARLDEAELSKTVPENISLEVSSPGVERVVRIPDELD 240
           IEKLSN+SGSP MEDIEAFS  YRARLDEAEL+K++PEN+SLEVSSPGVER+VR+P ELD
Sbjct: 181 IEKLSNRSGSPSMEDIEAFSRTYRARLDEAELAKSLPENLSLEVSSPGVERIVRVPHELD 240

Query: 241 RFKERAMYVKYTNDVVTPSSSSESDGIFKLVSFNIETRCCVWGLADVRINREKAGKGRPL 300
           RFK+R MYVKY ++       SE+DG+F+LVSF++ET+CCVWGLADVRINREKAGKGRPL
Sbjct: 241 RFKDRPMYVKYFSETAETGVISENDGVFRLVSFDVETKCCVWGLADVRINREKAGKGRPL 300

Query: 301 SKKQREWRLETPFDSLRL 305
           SKKQR+W+L TPFDSLRL
Sbjct: 301 SKKQRQWQLNTPFDSLRL 307

[Close]
BLAST of CmoCh15G006300 vs. TrEMBL
Match: A0A061FH06_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_035449 PE=3 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 7.3e-99
Identity = 199/317 (62.78%), Postives = 247/317 (77.92%), Query Frame = 1 

Query: 2   VMITVRNFRLSAVPISSILPQS-------GFRSSLISPRNLPFPFVGH---RFPSTSNNP 61
           ++++  NF+  AVPIS++LP          F     S     FPF  +   R P+ S + 
Sbjct: 3   LLVSAWNFKHLAVPISALLPSPTAITCSCSFYKPPGSANKFSFPFWTYPFARIPNKSPSS 62

Query: 62  LLLHARKKNSESEPVIKRNIVEEVSEDEEDDE----LLDELEDDEIMDDDGEDYFEEEFM 121
           + +HARKKNS+SEP++K  IVEEVS D+ED E    L D+ EDDE M D+ +DYFEEE++
Sbjct: 63  IAIHARKKNSKSEPLLKPTIVEEVSMDDEDKEEEQILFDDSEDDESMIDNDDDYFEEEYL 122

Query: 122 EDNAEVYVGDGGEGGGISLAGTWWDKEALAMAEEVILSFDGDLKIYAFKTVSNSTVQVRI 181
           ++  E+YVGDG  GGGISLAGTWWDKEALA+A++V LSF+GDL IYAFKT+SNS++QVRI
Sbjct: 123 DNETELYVGDGAGGGGISLAGTWWDKEALALAQDVCLSFNGDLGIYAFKTLSNSSIQVRI 182

Query: 182 EKLSNKSGSPRMEDIEAFSSRYRARLDEAELSKTVPENISLEVSSPGVERVVRIPDELDR 241
           E+L+NKSGSP MED+EAFS  YRARLDEAEL+++VP+NI+LEVSSPGVERVVR+P +LDR
Sbjct: 183 ERLTNKSGSPSMEDVEAFSVSYRARLDEAELARSVPQNITLEVSSPGVERVVRMPQDLDR 242

Query: 242 FKERAMYVKYTNDVVTPSSSSESDGIFKLVSFNIETRCCVWGLADVRINREKAGKGRPLS 301
           FK+R MYVKY   V    S SE DG+F+LV+F++ET+CC WGLADVRINREKAGKGRPLS
Sbjct: 243 FKDRPMYVKYVT-VAESGSLSEGDGVFRLVTFDMETKCCTWGLADVRINREKAGKGRPLS 302

Query: 302 KKQREWRLETPFDSLRL 305
           KKQREW LET FDSLRL
Sbjct: 303 KKQREWCLETTFDSLRL 318

[Close]
BLAST of CmoCh15G006300 vs. TAIR10
Match: AT1G77122.1 (AT1G77122.1 Uncharacterised protein family UPF0090)

HSP 1 Score: 304.3 bits (778), Expect = 8.6e-83
Identity = 176/308 (57.14%), Postives = 223/308 (72.40%), Query Frame = 1 

Query: 11  LSAVPISSILPQSGFRSSLISPRNLPFPFVGHRFPSTSNNPLLLHARKKNSES--EPV-- 70
           L A  IS++   + FRS+     +L F F    F  T N     HA++KN  S  EP   
Sbjct: 19  LPAFSISNLSAVNRFRSTT----SLRFGFPATPFRRTPNFTFKTHAKRKNKTSTFEPKPN 78

Query: 71  -IKRNIVEEVSEDEEDDELL---------DELEDDEIMDDDGEDYFEEEFMEDNAEVYVG 130
            ++  I+EE  E+EE++E++         DEL  D+  D+D +D FE  F E   E+Y G
Sbjct: 79  KVEELIIEEEEEEEEEEEIVLPEEIQENQDELLLDDEYDEDDDDDFE--FDESEEELYAG 138

Query: 131 DGGEGGGISLAGTWWDKEALAMAEEVILSFDGDLKIYAFKTVSNSTVQVRIEKLSNKSGS 190
           DGG GGGI LAGT WDK ALA+A +V  SFDGDL IYAFKT+ NST+QVRIE+L+NK GS
Sbjct: 139 DGGGGGGIKLAGTLWDKVALALAVKVCESFDGDLGIYAFKTLPNSTIQVRIERLTNKFGS 198

Query: 191 PRMEDIEAFSSRYRARLDEAELSKTVPENISLEVSSPGVERVVRIPDELDRFKERAMYVK 250
           P MEDIEAFS+ YRA+L EAEL+K++P+NISLEVSSPGVERVVRIP +LDR+K+R MYV+
Sbjct: 199 PTMEDIEAFSTIYRAKLAEAELAKSIPDNISLEVSSPGVERVVRIPQDLDRYKDRPMYVR 258

Query: 251 YTNDVVTPSSSSESDGIFKLVSFNIETRCCVWGLADVRINREKAGKGRPLSKKQREWRLE 305
           YTN+     + +E DGIF+LVSF++E + C+WG+AD+R+NREKAGKGRPLSKKQREWRLE
Sbjct: 259 YTNE----DTETEGDGIFRLVSFDVEAKICIWGIADIRVNREKAGKGRPLSKKQREWRLE 316

[Close]
BLAST of CmoCh15G006300 vs. TAIR10
Match: AT1G69210.1 (AT1G69210.1 Uncharacterised protein family UPF0090)

HSP 1 Score: 174.1 bits (440), Expect = 1.3e-43
Identity = 113/296 (38.18%), Postives = 171/296 (57.77%), Query Frame = 1 

Query: 4   ITVRNFRLSAVPISSILPQSGFRSSLISPRNLPFPFVGHRFPSTSNNPLLLHARKKNSES 63
           I+VR F  S      +LP++  R +L  PR  PF      F S+S++P       K + S
Sbjct: 26  ISVRTFSSSL-----LLPKTTTRLTL--PRYFPFSSSISTFSSSSSSPSPSARPPKTAGS 85

Query: 64  EPVIKRNIVEEVSEDEEDDELLDELEDDEIMDDDGEDYFEEEFMEDNAEVYVGDGGEGGG 123
                       + DEED       +D E+++D  ED       +++ E  +GDGG+GGG
Sbjct: 86  ------------NGDEEDTFEYKATDDVEVIEDWEEDE------DEDVESQLGDGGDGGG 145

Query: 124 ISLAGTWWDKEALAMAEEVILSFDGDLKIYAFKTVSNSTVQVRIEKLSNKSGSPRMEDIE 183
           I L G  W +  L++A +V+   + DL+++AFKT     + VR++KLS + G P M+++E
Sbjct: 146 IVLKGVAWGERVLSIAAQVLKQSEKDLELFAFKTSPRGYIYVRLDKLSTEYGCPTMDELE 205

Query: 184 AFSSRYRARLDEAELSKTVPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYTNDVVT 243
            FS  ++ RLD+A   K +PE+++LEVSSPG ER++R+P++L RFK+  M V Y  +  T
Sbjct: 206 EFSREFKKRLDDAGAEKVIPEDLALEVSSPGAERLLRVPEDLPRFKDMPMTVSYVEE--T 265

Query: 244 PSSSSESDGIFKLVSFNIETRCCVWGLADVRINREKAGKGRPLSKKQREWRLETPF 300
            S  +   G+F L S + E+  CVW LADVR NR+   KGRPLS+KQ++ R+  PF
Sbjct: 266 NSRKAVKSGVFLLESIDAESDNCVWKLADVRENRDPESKGRPLSRKQKDLRITLPF 294

[Close]
BLAST of CmoCh15G006300 vs. NCBI nr
Match: gi|659081884|ref|XP_008441560.1| (PREDICTED: uncharacterized protein LOC103485652 isoform X3 [Cucumis melo])

HSP 1 Score: 491.9 bits (1265), Expect = 8.2e-136
Identity = 256/304 (84.21%), Postives = 276/304 (90.79%), Query Frame = 1 

Query: 1   MVMITVRNFRLSAVPISSILPQSGFRSSLISPRNLPFPFVGHRFPSTSNNPLLLHARKKN 60
           M+ IT  N  LSAV     LP S FR S ISP NLPFPF+ HRFPSTSNN LLLHARK+N
Sbjct: 1   MLFITAPNSALSAVSTPPSLPHSVFRWSSISPTNLPFPFLDHRFPSTSNNSLLLHARKRN 60

Query: 61  SESEPVIKRNIVEEVSEDEEDDELLDELEDDEIMDDDGEDYFEEEFMEDNAEVYVGDGGE 120
           SES+PV+K NIV+EVSEDEEDD L+DE E+DEIM+DDGEDYFEEE+MEDNAEVY GDGGE
Sbjct: 61  SESQPVLKPNIVQEVSEDEEDDVLVDEFEEDEIMEDDGEDYFEEEYMEDNAEVYEGDGGE 120

Query: 121 GGGISLAGTWWDKEALAMAEEVILSFDGDLKIYAFKTVSNSTVQVRIEKLSNKSGSPRME 180
           GGGISLAG WWDK+ALA+AEEVILSF GDLKIYAFKTVSNSTVQVRIEKLSNKSGSP ME
Sbjct: 121 GGGISLAGIWWDKQALAIAEEVILSFHGDLKIYAFKTVSNSTVQVRIEKLSNKSGSPSME 180

Query: 181 DIEAFSSRYRARLDEAELSKTVPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYTND 240
           DIEAFS+ YRARLDEAEL+K+VPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYTND
Sbjct: 181 DIEAFSTTYRARLDEAELAKSVPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYTND 240

Query: 241 VVTPSSSSESDGIFKLVSFNIETRCCVWGLADVRINREKAGKGRPLSKKQREWRLETPFD 300
           VVT SSSSESDG+FKLVSF+IE +CC WG+ADV+INREKAGKGRPLSKKQREWRLETPFD
Sbjct: 241 VVTASSSSESDGVFKLVSFDIEAKCCTWGIADVKINREKAGKGRPLSKKQREWRLETPFD 300

Query: 301 SLRL 305
           SLRL
Sbjct: 301 SLRL 304

[Close]
BLAST of CmoCh15G006300 vs. NCBI nr
Match: gi|659081880|ref|XP_008441558.1| (PREDICTED: uncharacterized protein LOC103485652 isoform X1 [Cucumis melo])

HSP 1 Score: 485.0 bits (1247), Expect = 1.0e-133
Identity = 256/311 (82.32%), Postives = 276/311 (88.75%), Query Frame = 1 

Query: 1   MVMITVRNFRLSAVPISSILPQSGFRSSLISPRNLPFPFVGHRFPSTSNNPLLLHARKKN 60
           M+ IT  N  LSAV     LP S FR S ISP NLPFPF+ HRFPSTSNN LLLHARK+N
Sbjct: 1   MLFITAPNSALSAVSTPPSLPHSVFRWSSISPTNLPFPFLDHRFPSTSNNSLLLHARKRN 60

Query: 61  SESEPVIKRNIVEEVSEDEEDDELLDELED-------DEIMDDDGEDYFEEEFMEDNAEV 120
           SES+PV+K NIV+EVSEDEEDD L+DE E+       DEIM+DDGEDYFEEE+MEDNAEV
Sbjct: 61  SESQPVLKPNIVQEVSEDEEDDVLVDEFEEGHVLDSVDEIMEDDGEDYFEEEYMEDNAEV 120

Query: 121 YVGDGGEGGGISLAGTWWDKEALAMAEEVILSFDGDLKIYAFKTVSNSTVQVRIEKLSNK 180
           Y GDGGEGGGISLAG WWDK+ALA+AEEVILSF GDLKIYAFKTVSNSTVQVRIEKLSNK
Sbjct: 121 YEGDGGEGGGISLAGIWWDKQALAIAEEVILSFHGDLKIYAFKTVSNSTVQVRIEKLSNK 180

Query: 181 SGSPRMEDIEAFSSRYRARLDEAELSKTVPENISLEVSSPGVERVVRIPDELDRFKERAM 240
           SGSP MEDIEAFS+ YRARLDEAEL+K+VPENISLEVSSPGVERVVRIPDELDRFKERAM
Sbjct: 181 SGSPSMEDIEAFSTTYRARLDEAELAKSVPENISLEVSSPGVERVVRIPDELDRFKERAM 240

Query: 241 YVKYTNDVVTPSSSSESDGIFKLVSFNIETRCCVWGLADVRINREKAGKGRPLSKKQREW 300
           YVKYTNDVVT SSSSESDG+FKLVSF+IE +CC WG+ADV+INREKAGKGRPLSKKQREW
Sbjct: 241 YVKYTNDVVTASSSSESDGVFKLVSFDIEAKCCTWGIADVKINREKAGKGRPLSKKQREW 300

Query: 301 RLETPFDSLRL 305
           RLETPFDSLRL
Sbjct: 301 RLETPFDSLRL 311

[Close]
BLAST of CmoCh15G006300 vs. NCBI nr
Match: gi|449462174|ref|XP_004148816.1| (PREDICTED: uncharacterized protein LOC101204078 [Cucumis sativus])

HSP 1 Score: 484.6 bits (1246), Expect = 1.3e-133
Identity = 253/305 (82.95%), Postives = 277/305 (90.82%), Query Frame = 1 

Query: 1   MVMITVRNFRLSAVPIS-SILPQSGFRSSLISPRNLPFPFVGHRFPSTSNNPLLLHARKK 60
           M++IT  N  LSA+  S  ILP   FR S ISP NLPFPF+ HRFPSTSNN LLL ARK+
Sbjct: 1   MLLITAPNSALSALSSSLPILPHILFRCSSISPANLPFPFLDHRFPSTSNNSLLLRARKR 60

Query: 61  NSESEPVIKRNIVEEVSEDEEDDELLDELEDDEIMDDDGEDYFEEEFMEDNAEVYVGDGG 120
           NSES+PV+K+NIV+EVSEDEEDD L DE E DEIM+DDGEDYFEEE+MEDNAEVY+GDGG
Sbjct: 61  NSESQPVLKQNIVQEVSEDEEDDVLFDEFEQDEIMEDDGEDYFEEEYMEDNAEVYLGDGG 120

Query: 121 EGGGISLAGTWWDKEALAMAEEVILSFDGDLKIYAFKTVSNSTVQVRIEKLSNKSGSPRM 180
           EGGGISLAGTWWDK+ALA+AEEVILSF GDLKIYAFKTVSNSTVQVRIEKLS KSGSP M
Sbjct: 121 EGGGISLAGTWWDKQALAIAEEVILSFHGDLKIYAFKTVSNSTVQVRIEKLSTKSGSPNM 180

Query: 181 EDIEAFSSRYRARLDEAELSKTVPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYTN 240
           EDIEAFS+ YRARLD+AEL+K+VPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYTN
Sbjct: 181 EDIEAFSTTYRARLDDAELAKSVPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYTN 240

Query: 241 DVVTPSSSSESDGIFKLVSFNIETRCCVWGLADVRINREKAGKGRPLSKKQREWRLETPF 300
           +VVT SSSSESDG+FKLVSF+IE +CC WG+ADV+INREKAGKGRPLSKKQREWRLETPF
Sbjct: 241 EVVTASSSSESDGVFKLVSFDIEAKCCTWGIADVKINREKAGKGRPLSKKQREWRLETPF 300

Query: 301 DSLRL 305
           DSLRL
Sbjct: 301 DSLRL 305

[Close]
BLAST of CmoCh15G006300 vs. NCBI nr
Match: gi|225457765|ref|XP_002264003.1| (PREDICTED: uncharacterized protein LOC100266148 [Vitis vinifera])

HSP 1 Score: 380.6 bits (976), Expect = 2.7e-102
Identity = 201/308 (65.26%), Postives = 246/308 (79.87%), Query Frame = 1 

Query: 1   MVMITVRNFRLSAVPISSILPQSGFRSSLISPRNLPFPFVGHRFPSTSNNPLLLHARKKN 60
           M +IT  N R SA+  S++  +S F +      NL FPF  +  P  S      HA+K++
Sbjct: 1   MDLITTWNTRASAISFSALRSRSSFHNPSRQNHNLLFPFWPYPLPRISYKSFTAHAKKRS 60

Query: 61  SESEPVIKRNIVEEVS-EDEEDDELLDELEDDEIMDDDGE---DYFEEEFMEDNAEVYVG 120
           S+S+P++K+ IVE++S   ++DD LLD+ ED+ +MDDD +   + +E+E++ D+AEVYVG
Sbjct: 61  SQSQPLVKQTIVEQISTSQQQDDLLLDDFEDEALMDDDDDNDDEDWEDEYLADDAEVYVG 120

Query: 121 DGGEGGGISLAGTWWDKEALAMAEEVILSFDGDLKIYAFKTVSNSTVQVRIEKLSNKSGS 180
           DGGEGGGISLAGTWWDKEAL MAEEV +SF+GDLKIYAFKT++NST+QVRIEKLSNKSGS
Sbjct: 121 DGGEGGGISLAGTWWDKEALLMAEEVSMSFEGDLKIYAFKTLANSTIQVRIEKLSNKSGS 180

Query: 181 PRMEDIEAFSSRYRARLDEAELSKTVPENISLEVSSPGVERVVRIPDELDRFKERAMYVK 240
           P M DIEAFSS YRA+LDEAE++ +VPEN+SLEVSSPGVERVV+IP ELDRFKER MYVK
Sbjct: 181 PSMTDIEAFSSIYRAKLDEAEIAGSVPENLSLEVSSPGVERVVQIPQELDRFKERPMYVK 240

Query: 241 YTNDVVTPSSSSESDGIFKLVSFNIETRCCVWGLADVRINREKAGKGRPLSKKQREWRLE 300
           Y  + V P S+ ESDGIF+LVSF++ET CC WGLADVRINR KAGKGRPLSKKQREWRL 
Sbjct: 241 YVTEGVAPGSTIESDGIFRLVSFDLETNCCTWGLADVRINRAKAGKGRPLSKKQREWRLN 300

Query: 301 TPFDSLRL 305
           TPFDSL L
Sbjct: 301 TPFDSLCL 308

[Close]
BLAST of CmoCh15G006300 vs. NCBI nr
Match: gi|645264394|ref|XP_008237656.1| (PREDICTED: uncharacterized protein LOC103336395 [Prunus mume])

HSP 1 Score: 375.6 bits (963), Expect = 8.6e-101
Identity = 205/318 (64.47%), Postives = 248/318 (77.99%), Query Frame = 1 

Query: 1   MVMITVRNFRLSAVPISSILPQSGF----RSSLISPRNL-------PFPFVGHRFPSTSN 60
           M + T  N R SAV +S I+ +       R SL  P  L       PFPF+ ++FP+   
Sbjct: 1   MDLTTTWNLRASAVSLSPIITRRSRTHLQRPSLSPPPKLSCQFWAYPFPFIPNKFPA--- 60

Query: 61  NPLLLHARKKNSESEPVIKRNIVEEVSEDEEDDE--LLDELEDDEI-MDDDGEDYFEEEF 120
               LHARK+NSE EP++K  I+EEVSED+EDD+  +LD+ E+DE+ MDD+ +DY+EEE 
Sbjct: 61  ----LHARKRNSEPEPLLKPTIIEEVSEDDEDDDDVILDDFEEDEVLMDDEDDDYYEEE- 120

Query: 121 MEDNAEVYVGDGGEGGGISLAGTWWDKEALAMAEEVILSFDGDLKIYAFKTVSNSTVQVR 180
               AE+Y GDGG GGGISLAG WWD +AL +AEEVILSFDGDLKIYAFKT+ N T+QVR
Sbjct: 121 ---TAELYAGDGGGGGGISLAGVWWDNKALEIAEEVILSFDGDLKIYAFKTLPNFTIQVR 180

Query: 181 IEKLSNKSGSPRMEDIEAFSSRYRARLDEAELSKTVPENISLEVSSPGVERVVRIPDELD 240
           IEKLSN+SGSP MEDIEAFS  YRARLDEAEL+K++PEN+SLEVSSPGVER+VRIP ELD
Sbjct: 181 IEKLSNRSGSPSMEDIEAFSRTYRARLDEAELAKSLPENLSLEVSSPGVERIVRIPHELD 240

Query: 241 RFKERAMYVKYTNDVVTPSSSSESDGIFKLVSFNIETRCCVWGLADVRINREKAGKGRPL 300
           RFK+R MYVKY ++       SE+DG+F+LVSF++ET+CCVWGLADVRINREKAGKGRPL
Sbjct: 241 RFKDRPMYVKYFSETAETGVISENDGVFRLVSFDVETKCCVWGLADVRINREKAGKGRPL 300

Query: 301 SKKQREWRLETPFDSLRL 305
           SKKQR+W+L TPFDSLRL
Sbjct: 301 SKKQRQWQLNTPFDSLRL 307

The following BLAST results are available for this feature:
BLAST of CmoCh15G006300 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh15G006300 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDA0_CUCSA9.2e-13482.95Uncharacterized protein OS=Cucumis sativus GN=Csa_6G338150 PE=3 SV=1[more]
E0CQP0_VITVI1.9e-10265.26Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g15560 PE=4 SV=... [more]
A0A067L3N7_JATCU1.0e-10066.56Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25228 PE=3 SV=1[more]
M5W4C9_PRUPE1.0e-10063.84Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008923mg PE=3 SV=1[more]
A0A061FH06_THECC7.3e-9962.78Uncharacterized protein OS=Theobroma cacao GN=TCM_035449 PE=3 SV=1[more]
BLAST of CmoCh15G006300 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G77122.18.6e-8357.14 Uncharacterised protein family UPF0090[more]
AT1G69210.11.3e-4338.18 Uncharacterised protein family UPF0090[more]
BLAST of CmoCh15G006300 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659081884|ref|XP_008441560.1|8.2e-13684.21PREDICTED: uncharacterized protein LOC103485652 isoform X3 [Cucumis melo][more]
gi|659081880|ref|XP_008441558.1|1.0e-13382.32PREDICTED: uncharacterized protein LOC103485652 isoform X1 [Cucumis melo][more]
gi|449462174|ref|XP_004148816.1|1.3e-13382.95PREDICTED: uncharacterized protein LOC101204078 [Cucumis sativus][more]
gi|225457765|ref|XP_002264003.1|2.7e-10265.26PREDICTED: uncharacterized protein LOC100266148 [Vitis vinifera][more]
gi|645264394|ref|XP_008237656.1|8.6e-10164.47PREDICTED: uncharacterized protein LOC103336395 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003728Ribosome_maturation_RimP
Vocabulary: Biological Process
TermDefinition
GO:0042274ribosomal small subunit biogenesis
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042274 ribosomal small subunit biogenesis
biological_process GO:0006508 proteolysis
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0004185 serine-type carboxypeptidase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh15G006300.1CmoCh15G006300.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003728Ribosome maturation factor RimPPFAMPF02576DUF150coord: 155..241
score: 9.1
NoneNo IPR availablePANTHERPTHR34544FAMILY NOT NAMEDcoord: 1..304
score: 3.9E
NoneNo IPR availablePANTHERPTHR34544:SF2SUBFAMILY NOT NAMEDcoord: 1..304
score: 3.9E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh15G006300Cucsa.077070Cucumber (Gy14) v1cgycmoB0127
CmoCh15G006300CmaCh15G006240Cucurbita maxima (Rimu)cmacmoB287
CmoCh15G006300Cla013859Watermelon (97103) v1cmowmB250
CmoCh15G006300Csa6G338150Cucumber (Chinese Long) v2cmocuB299
CmoCh15G006300MELO3C008408Melon (DHL92) v3.5.1cmomeB259
CmoCh15G006300ClCG08G006460Watermelon (Charleston Gray)cmowcgB265
CmoCh15G006300CSPI06G18100Wild cucumber (PI 183967)cmocpiB308
CmoCh15G006300Lsi08G005230Bottle gourd (USVL1VR-Ls)cmolsiB282
CmoCh15G006300Cp4.1LG13g04110Cucurbita pepo (Zucchini)cmocpeB268
CmoCh15G006300MELO3C008408.2Melon (DHL92) v3.6.1cmomedB293
CmoCh15G006300CsaV3_6G030960Cucumber (Chinese Long) v3cmocucB0361
CmoCh15G006300Cla97C08G149260Watermelon (97103) v2cmowmbB302
CmoCh15G006300Bhi04G001418Wax gourdcmowgoB0386
CmoCh15G006300CsGy6G017560Cucumber (Gy14) v2cgybcmoB724
CmoCh15G006300Carg01583Silver-seed gourdcarcmoB1118
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh15G006300Cucurbita maxima (Rimu)cmacmoB693
CmoCh15G006300Cucumber (Chinese Long) v2cmocuB305
CmoCh15G006300Watermelon (Charleston Gray)cmowcgB234
CmoCh15G006300Watermelon (97103) v1cmowmB244
CmoCh15G006300Cucurbita pepo (Zucchini)cmocpeB280
CmoCh15G006300Cucurbita pepo (Zucchini)cmocpeB299
CmoCh15G006300Bottle gourd (USVL1VR-Ls)cmolsiB262
CmoCh15G006300Cucumber (Gy14) v2cgybcmoB900
CmoCh15G006300Silver-seed gourdcarcmoB0092
CmoCh15G006300Cucumber (Chinese Long) v3cmocucB0367
CmoCh15G006300Watermelon (97103) v2cmowmbB306
CmoCh15G006300Cucurbita moschata (Rifu)cmocmoB009
CmoCh15G006300Cucurbita moschata (Rifu)cmocmoB262
CmoCh15G006300Cucumber (Gy14) v1cgycmoB0132