Cla013859 (gene) Watermelon (97103) v1

Overview
NameCla013859
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionRibosome maturation factor rimP (AHRD V1 *-*- RIMP_LEPBP); contains Interpro domain(s) IPR003728 Uncharacterised protein family UPF0090
LocationChr8 : 15776635 .. 15779436 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCTTGATTACTGCTCGTAATTCCAGGCTCTCTGCAGTTTCCACTTCACTAATCCTTCCACAAAGTGGCTTCCGATGGTCTTCAATCTCCCCCAGAAATCTTCCCTTCCCATTTGTCGAGCATCGATTTCCTTCTACGTCGAACAATCCCCTATTACTTCATGCCAGAAAGAGAAACTCAGAGTCACAGCCAGTTCTCAAACGAAACATCGTCGAGGAAGTGTCGGAGGACGAAGAAGATGACGTCCTTCTCGACGAACTTGAAGAAGGTAAAACCCATTGACAAAAACCCTGTCCCAATTTATCCCTTTAATTCAACTAAATGTTAGTATAGACTGGTCTTGCAAAAGTAAATTGACGGGACACGTTCTTGATTGCGTAGATGAGATAATGGAAGATGATGACGAAGATTACTTTGAAGAAGAGTATATGGAGGATAATGCTGAAGTCTATGTAAGATTTTCGCCTCTAAATATGGAGGTATTGTGCTGAAAATTTTAACTCAAGTCCTGGATTAGTGGTTTGATGGTTAATTTTGTTTGAAGGAAGGGGATGGCAGGGAAGGAGGTGGAATTTCCCTCGCTGGGACATGGTGGGATAAAGAAGCACTGGCTATAGCTGAAGAGGTTATTCTTTCATTTTATGGTGACTTGAAGATTTATGCTTTCAAAACAGTCTCTAATTCCACTGTTCGAGTGCGGATTGAAAAGCTTTCTAACAAGTAAGTTTTGCAATCTCTGTAGTTATGTTATGTGTGTGTTACATTTGTATCTTTCTTTTAAAAAATTAAATAGAAATGCATTGCACATTTTCTAGAACATATTAGTTTGAGGTTTGCTTTTCTTGCAAGATTATAATTTCCCTATTGCTGCATTCATAAGAATGAAATGCCGTCTTCGAGCTCTTTCTATCCCAACCTGCTCGCCTCTCAAAGGATTGTTTGAGTGATGTTGATACTAGGAAATATTAGGATTACTGGCCCTACATTTCACTCGCAAATTAAGGAAGATAGTTCACACCATGAACAGAGATTTAAGAACTTTTTGGAATGACTGGCCAAACATTTTTTCTATACTTCAAAAACACTCTTTTAAACATTTTGAAAGTCATTCCAAATAGTCCCTTATATTAGTTCACCTACTTCAATTGAGTAAGGTCCAATATTCTACTCATGTTCAAGTGCGAATTGAAAAGCTCATATTCTACTCATGTTCAAGTCTCATCTAAAAGGATTGTTTGAGTGATGTTGATATTAGGAAATATTAGGACTATTGGCCTACATTTCACTTGCAAATTAAGGAAGATAGTTGATGCCAGAACCAGAAATTTATGACTTGTTTGGAATGACTGCCTAAGTGCTTAAAAACATTTTTCTATACTTAAAAATACTTTTCAAACATTTGGAAAATCATTCTAAATAGATTCTTATATTAGTTCACCCACTCTAATTGAATTAGATCCAATATTCTACTCATGTTGTAGGTTACACAATAATGGATGGGAGAAGATAACACCAACGGTTACTAGATAAGTTTTCTCACCATATTTCTCTCTAGAAACAACGTAGACTCTTTTCCTTGTATAGTCCCCTCACTCCATTATCTTCAAAAAAGAGATAACTAAGGCTTAATTAGTATGTTGCTCAAGTCATGGTGCTGGCCGTTTTGGAAATCCTGTCTTGCTTCTGGTGCTGCTGTGCCTACCTCTATAGTTAGATGCTTGCATTTAGCATTGAACTCAGGGATTAGATCTTGCGTGAGGAATTGCGCCCACGTGTCTTTAACCAAAATTTTGACGGGATTGGTTTAGACCCCACAACTTAGCACTTCCAATTACCTTTTAAGCTGGAAATGGAGATGCCTTTTGCTTTCATGTTAATCAAGAGAAAATCATTACCAGGCTTCAAAGTTTTTCCTTGATATTAGTATTCTCACGGAACCCATTCACCACACAACTCAAAGCAGACTTGGATTTTTTCAAACTCCTTATTGTTTGAACTATGTCACACTAATCTGAAGGATTTCCAGATACTAAGGACGTTACAATTGAAGTCCAGTTTAAGGATATGAAAAATGTGTTAACACTTTAGATGTTGTTTTCCCAAGTTTACTGTTCGTGCATGTGTTCTTGCTTAGACTAAGGACCATTTCCTGGGTTCTAATTCCCAACAATGCACCTCAGATCGGGTTCCCCCAGTATGGAAGATATTGAGGCTTTTTCTACAACATATCGAGCACGATTGGATCAGGCAGAGCTTGCTAAATCTGTGCCAGAGAACATATCTTTAGAGGTATGCTTATTTTTCCCTGTTCTAATTCCCTCATATTTTCCTGTATCATCAACCAATCTATCTTTAGCTTCTGAATGAGAAATTTTTCACTTCCATTACTCAAATTAGTTTTCTAATTGACAAGAGCAGAATAGAATTGCTCTCTTAGAACTACTCTGTAAGCTTTTGGGTCTAAATGGGTGTTAATCCTTCCTACATTATAAGGTCTCATCTCCTGGTGTTGAACGGGTTGTTCGGATTCCTGACGAGCTGGATCGGTTCAAAGAGAGGGCAATGTATGTGAAATACACAAACAATGTAGCTACAGCCAGTTCGTCCTCTGAGAGTGACGGCATTTTCAAGCTTGTGTCGTTCGACATAGAAGCGAAGTGCTGCACTTGGGGTTTAGCAGACGTGAAGATAAATAGAGAGAAGGCGGGAAAAGGAAGACCTCTTAGCAAAAAGCAAAGAGAGTGGCGTTTAGAGACTCCTTTTGATTCATTACGTTTGGTTAGGCTGTATTCTGATTGCTGA

mRNA sequence

GTCTTGATTACTGCTCGTAATTCCAGGCTCTCTGCAGTTTCCACTTCACTAATCCTTCCACAAAGTGGCTTCCGATGGTCTTCAATCTCCCCCAGAAATCTTCCCTTCCCATTTGTCGAGCATCGATTTCCTTCTACGTCGAACAATCCCCTATTACTTCATGCCAGAAAGAGAAACTCAGAGTCACAGCCAGTTCTCAAACGAAACATCGTCGAGGAAGTGTCGGAGGACGAAGAAGATGACGTCCTTCTCGACGAACTTGAAGAAGATGAGATAATGGAAGATGATGACGAAGATTACTTTGAAGAAGAGTATATGGAGGATAATGCTGAAGTCTATGAAGGGGATGGCAGGGAAGGAGGTGGAATTTCCCTCGCTGGGACATGGTGGGATAAAGAAGCACTGGCTATAGCTGAAGAGGTTATTCTTTCATTTTATGGTGACTTGAAGATTTATGCTTTCAAAACAGTCTCTAATTCCACTGTTCGAGTGCGGATTGAAAAGCTTTCTAACAAATCGGGTTCCCCCAGTATGGAAGATATTGAGGCTTTTTCTACAACATATCGAGCACGATTGGATCAGGCAGAGCTTGCTAAATCTGTGCCAGAGAACATATCTTTAGAGGTCTCATCTCCTGGTGTTGAACGGGTTGTTCGGATTCCTGACGAGCTGGATCGGTTCAAAGAGAGGGCAATGTATGTGAAATACACAAACAATGTAGCTACAGCCAGTTCGTCCTCTGAGAGTGACGGCATTTTCAAGCTTGTGTCGTTCGACATAGAAGCGAAGTGCTGCACTTGGGGTTTAGCAGACGTGAAGATAAATAGAGAGAAGGCGGGAAAAGGAAGACCTCTTAGCAAAAAGCAAAGAGAGTGGCGTTTAGAGACTCCTTTTGATTCATTACGTTTGGTTAGGCTGTATTCTGATTGCTGA

Coding sequence (CDS)

GTCTTGATTACTGCTCGTAATTCCAGGCTCTCTGCAGTTTCCACTTCACTAATCCTTCCACAAAGTGGCTTCCGATGGTCTTCAATCTCCCCCAGAAATCTTCCCTTCCCATTTGTCGAGCATCGATTTCCTTCTACGTCGAACAATCCCCTATTACTTCATGCCAGAAAGAGAAACTCAGAGTCACAGCCAGTTCTCAAACGAAACATCGTCGAGGAAGTGTCGGAGGACGAAGAAGATGACGTCCTTCTCGACGAACTTGAAGAAGATGAGATAATGGAAGATGATGACGAAGATTACTTTGAAGAAGAGTATATGGAGGATAATGCTGAAGTCTATGAAGGGGATGGCAGGGAAGGAGGTGGAATTTCCCTCGCTGGGACATGGTGGGATAAAGAAGCACTGGCTATAGCTGAAGAGGTTATTCTTTCATTTTATGGTGACTTGAAGATTTATGCTTTCAAAACAGTCTCTAATTCCACTGTTCGAGTGCGGATTGAAAAGCTTTCTAACAAATCGGGTTCCCCCAGTATGGAAGATATTGAGGCTTTTTCTACAACATATCGAGCACGATTGGATCAGGCAGAGCTTGCTAAATCTGTGCCAGAGAACATATCTTTAGAGGTCTCATCTCCTGGTGTTGAACGGGTTGTTCGGATTCCTGACGAGCTGGATCGGTTCAAAGAGAGGGCAATGTATGTGAAATACACAAACAATGTAGCTACAGCCAGTTCGTCCTCTGAGAGTGACGGCATTTTCAAGCTTGTGTCGTTCGACATAGAAGCGAAGTGCTGCACTTGGGGTTTAGCAGACGTGAAGATAAATAGAGAGAAGGCGGGAAAAGGAAGACCTCTTAGCAAAAAGCAAAGAGAGTGGCGTTTAGAGACTCCTTTTGATTCATTACGTTTGGTTAGGCTGTATTCTGATTGCTGA

Protein sequence

VLITARNSRLSAVSTSLILPQSGFRWSSISPRNLPFPFVEHRFPSTSNNPLLLHARKRNSESQPVLKRNIVEEVSEDEEDDVLLDELEEDEIMEDDDEDYFEEEYMEDNAEVYEGDGREGGGISLAGTWWDKEALAIAEEVILSFYGDLKIYAFKTVSNSTVRVRIEKLSNKSGSPSMEDIEAFSTTYRARLDQAELAKSVPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYTNNVATASSSSESDGIFKLVSFDIEAKCCTWGLADVKINREKAGKGRPLSKKQREWRLETPFDSLRLVRLYSDC
Homology
[Close]
BLAST of Cla013859 vs. TrEMBL
Match: A0A0A0KDA0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G338150 PE=3 SV=1)

HSP 1 Score: 546.6 bits (1407), Expect = 2.0e-152
Identity = 278/311 (89.39%), Postives = 292/311 (93.89%), Query Frame = 1 

Query: 1   VLITARNSRLSAVSTSL-ILPQSGFRWSSISPRNLPFPFVEHRFPSTSNNPLLLHARKRN 60
           +LITA NS LSA+S+SL ILP   FR SSISP NLPFPF++HRFPSTSNN LLL ARKRN
Sbjct: 2   LLITAPNSALSALSSSLPILPHILFRCSSISPANLPFPFLDHRFPSTSNNSLLLRARKRN 61

Query: 61  SESQPVLKRNIVEEVSEDEEDDVLLDELEEDEIMEDDDEDYFEEEYMEDNAEVYEGDGRE 120
           SESQPVLK+NIV+EVSEDEEDDVL DE E+DEIMEDD EDYFEEEYMEDNAEVY GDG E
Sbjct: 62  SESQPVLKQNIVQEVSEDEEDDVLFDEFEQDEIMEDDGEDYFEEEYMEDNAEVYLGDGGE 121

Query: 121 GGGISLAGTWWDKEALAIAEEVILSFYGDLKIYAFKTVSNSTVRVRIEKLSNKSGSPSME 180
           GGGISLAGTWWDK+ALAIAEEVILSF+GDLKIYAFKTVSNSTV+VRIEKLS KSGSP+ME
Sbjct: 122 GGGISLAGTWWDKQALAIAEEVILSFHGDLKIYAFKTVSNSTVQVRIEKLSTKSGSPNME 181

Query: 181 DIEAFSTTYRARLDQAELAKSVPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYTNN 240
           DIEAFSTTYRARLD AELAKSVPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYTN 
Sbjct: 182 DIEAFSTTYRARLDDAELAKSVPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYTNE 241

Query: 241 VATASSSSESDGIFKLVSFDIEAKCCTWGLADVKINREKAGKGRPLSKKQREWRLETPFD 300
           V TASSSSESDG+FKLVSFDIEAKCCTWG+ADVKINREKAGKGRPLSKKQREWRLETPFD
Sbjct: 242 VVTASSSSESDGVFKLVSFDIEAKCCTWGIADVKINREKAGKGRPLSKKQREWRLETPFD 301

Query: 301 SLRLVRLYSDC 311
           SLRLVRLYSDC
Sbjct: 302 SLRLVRLYSDC 312

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BLAST of Cla013859 vs. TrEMBL
Match: E0CQP0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g15560 PE=4 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 4.2e-110
Identity = 205/312 (65.71%), Postives = 249/312 (79.81%), Query Frame = 1 

Query: 2   LITARNSRLSAVSTSLILPQSGFRWSSISPRNLPFPFVEHRFPSTSNNPLLLHARKRNSE 61
           LIT  N+R SA+S S +  +S F   S    NL FPF  +  P  S      HA+KR+S+
Sbjct: 3   LITTWNTRASAISFSALRSRSSFHNPSRQNHNLLFPFWPYPLPRISYKSFTAHAKKRSSQ 62

Query: 62  SQPVLKRNIVEEVS-EDEEDDVLLDELEEDEIMEDDDE---DYFEEEYMEDNAEVYEGDG 121
           SQP++K+ IVE++S   ++DD+LLD+ E++ +M+DDD+   + +E+EY+ D+AEVY GDG
Sbjct: 63  SQPLVKQTIVEQISTSQQQDDLLLDDFEDEALMDDDDDNDDEDWEDEYLADDAEVYVGDG 122

Query: 122 REGGGISLAGTWWDKEALAIAEEVILSFYGDLKIYAFKTVSNSTVRVRIEKLSNKSGSPS 181
            EGGGISLAGTWWDKEAL +AEEV +SF GDLKIYAFKT++NST++VRIEKLSNKSGSPS
Sbjct: 123 GEGGGISLAGTWWDKEALLMAEEVSMSFEGDLKIYAFKTLANSTIQVRIEKLSNKSGSPS 182

Query: 182 MEDIEAFSTTYRARLDQAELAKSVPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYT 241
           M DIEAFS+ YRA+LD+AE+A SVPEN+SLEVSSPGVERVV+IP ELDRFKER MYVKY 
Sbjct: 183 MTDIEAFSSIYRAKLDEAEIAGSVPENLSLEVSSPGVERVVQIPQELDRFKERPMYVKYV 242

Query: 242 NNVATASSSSESDGIFKLVSFDIEAKCCTWGLADVKINREKAGKGRPLSKKQREWRLETP 301
                  S+ ESDGIF+LVSFD+E  CCTWGLADV+INR KAGKGRPLSKKQREWRL TP
Sbjct: 243 TEGVAPGSTIESDGIFRLVSFDLETNCCTWGLADVRINRAKAGKGRPLSKKQREWRLNTP 302

Query: 302 FDSLRLVRLYSD 310
           FDSL LVRLYS+
Sbjct: 303 FDSLCLVRLYSE 314

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BLAST of Cla013859 vs. TrEMBL
Match: M5W4C9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008923mg PE=3 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 3.0e-108
Identity = 210/322 (65.22%), Postives = 251/322 (77.95%), Query Frame = 1 

Query: 2   LITARNSRLSAVSTSLILPQSG---FRWSSISPRN--------LPFPFVEHRFPSTSNNP 61
           L T  N R SAVS S I+ +      +  S+SP           PFPF+ ++FP+     
Sbjct: 3   LTTTWNLRASAVSLSPIVTRRSRTHLQRPSLSPPPKLSCQFWAYPFPFIPNKFPA----- 62

Query: 62  LLLHARKRNSESQPVLKRNIVEEVSEDEEDD--VLLDELEEDEI-MEDDDEDYFEEEYME 121
             LHAR RNSE +P+LK  I+EEVSED++DD  V+LD+ EEDE+ M+D+ +DY+EEE   
Sbjct: 63  --LHARNRNSEPEPLLKPTIIEEVSEDDDDDDDVILDDFEEDEVSMDDEGDDYYEEE--- 122

Query: 122 DNAEVYEGDGREGGGISLAGTWWDKEALAIAEEVILSFYGDLKIYAFKTVSNSTVRVRIE 181
            +AE+Y GDG  GGGISLAG WWD +AL IAEEVILSF GDLKIYAFKT+ N T++VRIE
Sbjct: 123 -SAELYAGDGGGGGGISLAGVWWDNKALEIAEEVILSFDGDLKIYAFKTLPNFTIQVRIE 182

Query: 182 KLSNKSGSPSMEDIEAFSTTYRARLDQAELAKSVPENISLEVSSPGVERVVRIPDELDRF 241
           KLSN+SGSPSMEDIEAFS TYRARLD+AELAKS+PEN+SLEVSSPGVER+VR+P ELDRF
Sbjct: 183 KLSNRSGSPSMEDIEAFSRTYRARLDEAELAKSLPENLSLEVSSPGVERIVRVPHELDRF 242

Query: 242 KERAMYVKYTNNVATASSSSESDGIFKLVSFDIEAKCCTWGLADVKINREKAGKGRPLSK 301
           K+R MYVKY +  A     SE+DG+F+LVSFD+E KCC WGLADV+INREKAGKGRPLSK
Sbjct: 243 KDRPMYVKYFSETAETGVISENDGVFRLVSFDVETKCCVWGLADVRINREKAGKGRPLSK 302

Query: 302 KQREWRLETPFDSLRLVRLYSD 310
           KQR+W+L TPFDSLRLVRLYSD
Sbjct: 303 KQRQWQLNTPFDSLRLVRLYSD 313

[Close]
BLAST of Cla013859 vs. TrEMBL
Match: A0A067L3N7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25228 PE=3 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 5.1e-108
Identity = 197/285 (69.12%), Postives = 238/285 (83.51%), Query Frame = 1 

Query: 28  SISPRNLPFPFVEHRFPSTSNNPLLLHARKRNSESQPVLKRNIVEEVSE---DEEDDVLL 87
           S+S  N PFP +   FP+       L A+KRNS+S+PVLK  I+EEVSE   DEE+ + L
Sbjct: 23  SLSNHNFPFPILAQPFPAIQIKSYPLQAKKRNSQSEPVLKPTIIEEVSEEDEDEEEQLFL 82

Query: 88  DELEEDEIMEDDDEDYFEEEYMEDNAEVYEGDGREGGGISLAGTWWDKEALAIAEEVILS 147
           DELE++ +M+ +DED  E+E++ED AE+Y GDG  GGGI+LAGTWWDKEAL IAEEV  S
Sbjct: 83  DELEDEALMDTEDED-LEDEFLEDEAELYVGDGTAGGGIALAGTWWDKEALRIAEEVCES 142

Query: 148 FYGDLKIYAFKTVSNSTVRVRIEKLSNKSGSPSMEDIEAFSTTYRARLDQAELAKSVPEN 207
           F G+LKIYAFKT+SN T++VRIE+L+NKSGSP+MEDIEAFSTTYR+RLD+AE+AK++  N
Sbjct: 143 FDGELKIYAFKTLSNLTIQVRIERLTNKSGSPNMEDIEAFSTTYRSRLDEAEVAKTIANN 202

Query: 208 ISLEVSSPGVERVVRIPDELDRFKERAMYVKYTNNVATASSSSESDGIFKLVSFDIEAKC 267
           I+LEVSSPGVERVVRIP+ELDRF +R MYVKY ++ AT  SSSESDGIF+L+SFD+E KC
Sbjct: 203 IALEVSSPGVERVVRIPEELDRFNDRPMYVKYVSDAATLDSSSESDGIFRLISFDMETKC 262

Query: 268 CTWGLADVKINREKAGKGRPLSKKQREWRLETPFDSLRLVRLYSD 310
           CTWGLADV+INREKAGKGRPLSKKQREWRL TPF SL LVRLYS+
Sbjct: 263 CTWGLADVRINREKAGKGRPLSKKQREWRLNTPFHSLLLVRLYSE 306

[Close]
BLAST of Cla013859 vs. TrEMBL
Match: A0A061FH06_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_035449 PE=3 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 2.5e-107
Identity = 204/323 (63.16%), Postives = 253/323 (78.33%), Query Frame = 1 

Query: 1   VLITARNSRLSAVSTSLILPQS-------GFRWSSISPRNLPFPFVEH---RFPSTSNNP 60
           +L++A N +  AV  S +LP          F     S     FPF  +   R P+ S + 
Sbjct: 3   LLVSAWNFKHLAVPISALLPSPTAITCSCSFYKPPGSANKFSFPFWTYPFARIPNKSPSS 62

Query: 61  LLLHARKRNSESQPVLKRNIVEEVSEDEED----DVLLDELEEDEIMEDDDEDYFEEEYM 120
           + +HARK+NS+S+P+LK  IVEEVS D+ED     +L D+ E+DE M D+D+DYFEEEY+
Sbjct: 63  IAIHARKKNSKSEPLLKPTIVEEVSMDDEDKEEEQILFDDSEDDESMIDNDDDYFEEEYL 122

Query: 121 EDNAEVYEGDGREGGGISLAGTWWDKEALAIAEEVILSFYGDLKIYAFKTVSNSTVRVRI 180
           ++  E+Y GDG  GGGISLAGTWWDKEALA+A++V LSF GDL IYAFKT+SNS+++VRI
Sbjct: 123 DNETELYVGDGAGGGGISLAGTWWDKEALALAQDVCLSFNGDLGIYAFKTLSNSSIQVRI 182

Query: 181 EKLSNKSGSPSMEDIEAFSTTYRARLDQAELAKSVPENISLEVSSPGVERVVRIPDELDR 240
           E+L+NKSGSPSMED+EAFS +YRARLD+AELA+SVP+NI+LEVSSPGVERVVR+P +LDR
Sbjct: 183 ERLTNKSGSPSMEDVEAFSVSYRARLDEAELARSVPQNITLEVSSPGVERVVRMPQDLDR 242

Query: 241 FKERAMYVKYTNNVATASSSSESDGIFKLVSFDIEAKCCTWGLADVKINREKAGKGRPLS 300
           FK+R MYVKY   VA + S SE DG+F+LV+FD+E KCCTWGLADV+INREKAGKGRPLS
Sbjct: 243 FKDRPMYVKYV-TVAESGSLSEGDGVFRLVTFDMETKCCTWGLADVRINREKAGKGRPLS 302

Query: 301 KKQREWRLETPFDSLRLVRLYSD 310
           KKQREW LET FDSLRLVRLYS+
Sbjct: 303 KKQREWCLETTFDSLRLVRLYSE 324

[Close]
BLAST of Cla013859 vs. NCBI nr
Match: gi|659081884|ref|XP_008441560.1| (PREDICTED: uncharacterized protein LOC103485652 isoform X3 [Cucumis melo])

HSP 1 Score: 562.0 bits (1447), Expect = 6.5e-157
Identity = 282/310 (90.97%), Postives = 294/310 (94.84%), Query Frame = 1 

Query: 1   VLITARNSRLSAVSTSLILPQSGFRWSSISPRNLPFPFVEHRFPSTSNNPLLLHARKRNS 60
           + ITA NS LSAVST   LP S FRWSSISP NLPFPF++HRFPSTSNN LLLHARKRNS
Sbjct: 2   LFITAPNSALSAVSTPPSLPHSVFRWSSISPTNLPFPFLDHRFPSTSNNSLLLHARKRNS 61

Query: 61  ESQPVLKRNIVEEVSEDEEDDVLLDELEEDEIMEDDDEDYFEEEYMEDNAEVYEGDGREG 120
           ESQPVLK NIV+EVSEDEEDDVL+DE EEDEIMEDD EDYFEEEYMEDNAEVYEGDG EG
Sbjct: 62  ESQPVLKPNIVQEVSEDEEDDVLVDEFEEDEIMEDDGEDYFEEEYMEDNAEVYEGDGGEG 121

Query: 121 GGISLAGTWWDKEALAIAEEVILSFYGDLKIYAFKTVSNSTVRVRIEKLSNKSGSPSMED 180
           GGISLAG WWDK+ALAIAEEVILSF+GDLKIYAFKTVSNSTV+VRIEKLSNKSGSPSMED
Sbjct: 122 GGISLAGIWWDKQALAIAEEVILSFHGDLKIYAFKTVSNSTVQVRIEKLSNKSGSPSMED 181

Query: 181 IEAFSTTYRARLDQAELAKSVPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYTNNV 240
           IEAFSTTYRARLD+AELAKSVPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYTN+V
Sbjct: 182 IEAFSTTYRARLDEAELAKSVPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYTNDV 241

Query: 241 ATASSSSESDGIFKLVSFDIEAKCCTWGLADVKINREKAGKGRPLSKKQREWRLETPFDS 300
            TASSSSESDG+FKLVSFDIEAKCCTWG+ADVKINREKAGKGRPLSKKQREWRLETPFDS
Sbjct: 242 VTASSSSESDGVFKLVSFDIEAKCCTWGIADVKINREKAGKGRPLSKKQREWRLETPFDS 301

Query: 301 LRLVRLYSDC 311
           LRLVRLYSDC
Sbjct: 302 LRLVRLYSDC 311

[Close]
BLAST of Cla013859 vs. NCBI nr
Match: gi|659081880|ref|XP_008441558.1| (PREDICTED: uncharacterized protein LOC103485652 isoform X1 [Cucumis melo])

HSP 1 Score: 555.1 bits (1429), Expect = 7.9e-155
Identity = 282/317 (88.96%), Postives = 294/317 (92.74%), Query Frame = 1 

Query: 1   VLITARNSRLSAVSTSLILPQSGFRWSSISPRNLPFPFVEHRFPSTSNNPLLLHARKRNS 60
           + ITA NS LSAVST   LP S FRWSSISP NLPFPF++HRFPSTSNN LLLHARKRNS
Sbjct: 2   LFITAPNSALSAVSTPPSLPHSVFRWSSISPTNLPFPFLDHRFPSTSNNSLLLHARKRNS 61

Query: 61  ESQPVLKRNIVEEVSEDEEDDVLLDELEE-------DEIMEDDDEDYFEEEYMEDNAEVY 120
           ESQPVLK NIV+EVSEDEEDDVL+DE EE       DEIMEDD EDYFEEEYMEDNAEVY
Sbjct: 62  ESQPVLKPNIVQEVSEDEEDDVLVDEFEEGHVLDSVDEIMEDDGEDYFEEEYMEDNAEVY 121

Query: 121 EGDGREGGGISLAGTWWDKEALAIAEEVILSFYGDLKIYAFKTVSNSTVRVRIEKLSNKS 180
           EGDG EGGGISLAG WWDK+ALAIAEEVILSF+GDLKIYAFKTVSNSTV+VRIEKLSNKS
Sbjct: 122 EGDGGEGGGISLAGIWWDKQALAIAEEVILSFHGDLKIYAFKTVSNSTVQVRIEKLSNKS 181

Query: 181 GSPSMEDIEAFSTTYRARLDQAELAKSVPENISLEVSSPGVERVVRIPDELDRFKERAMY 240
           GSPSMEDIEAFSTTYRARLD+AELAKSVPENISLEVSSPGVERVVRIPDELDRFKERAMY
Sbjct: 182 GSPSMEDIEAFSTTYRARLDEAELAKSVPENISLEVSSPGVERVVRIPDELDRFKERAMY 241

Query: 241 VKYTNNVATASSSSESDGIFKLVSFDIEAKCCTWGLADVKINREKAGKGRPLSKKQREWR 300
           VKYTN+V TASSSSESDG+FKLVSFDIEAKCCTWG+ADVKINREKAGKGRPLSKKQREWR
Sbjct: 242 VKYTNDVVTASSSSESDGVFKLVSFDIEAKCCTWGIADVKINREKAGKGRPLSKKQREWR 301

Query: 301 LETPFDSLRLVRLYSDC 311
           LETPFDSLRLVRLYSDC
Sbjct: 302 LETPFDSLRLVRLYSDC 318

[Close]
BLAST of Cla013859 vs. NCBI nr
Match: gi|449462174|ref|XP_004148816.1| (PREDICTED: uncharacterized protein LOC101204078 [Cucumis sativus])

HSP 1 Score: 546.6 bits (1407), Expect = 2.8e-152
Identity = 278/311 (89.39%), Postives = 292/311 (93.89%), Query Frame = 1 

Query: 1   VLITARNSRLSAVSTSL-ILPQSGFRWSSISPRNLPFPFVEHRFPSTSNNPLLLHARKRN 60
           +LITA NS LSA+S+SL ILP   FR SSISP NLPFPF++HRFPSTSNN LLL ARKRN
Sbjct: 2   LLITAPNSALSALSSSLPILPHILFRCSSISPANLPFPFLDHRFPSTSNNSLLLRARKRN 61

Query: 61  SESQPVLKRNIVEEVSEDEEDDVLLDELEEDEIMEDDDEDYFEEEYMEDNAEVYEGDGRE 120
           SESQPVLK+NIV+EVSEDEEDDVL DE E+DEIMEDD EDYFEEEYMEDNAEVY GDG E
Sbjct: 62  SESQPVLKQNIVQEVSEDEEDDVLFDEFEQDEIMEDDGEDYFEEEYMEDNAEVYLGDGGE 121

Query: 121 GGGISLAGTWWDKEALAIAEEVILSFYGDLKIYAFKTVSNSTVRVRIEKLSNKSGSPSME 180
           GGGISLAGTWWDK+ALAIAEEVILSF+GDLKIYAFKTVSNSTV+VRIEKLS KSGSP+ME
Sbjct: 122 GGGISLAGTWWDKQALAIAEEVILSFHGDLKIYAFKTVSNSTVQVRIEKLSTKSGSPNME 181

Query: 181 DIEAFSTTYRARLDQAELAKSVPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYTNN 240
           DIEAFSTTYRARLD AELAKSVPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYTN 
Sbjct: 182 DIEAFSTTYRARLDDAELAKSVPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYTNE 241

Query: 241 VATASSSSESDGIFKLVSFDIEAKCCTWGLADVKINREKAGKGRPLSKKQREWRLETPFD 300
           V TASSSSESDG+FKLVSFDIEAKCCTWG+ADVKINREKAGKGRPLSKKQREWRLETPFD
Sbjct: 242 VVTASSSSESDGVFKLVSFDIEAKCCTWGIADVKINREKAGKGRPLSKKQREWRLETPFD 301

Query: 301 SLRLVRLYSDC 311
           SLRLVRLYSDC
Sbjct: 302 SLRLVRLYSDC 312

[Close]
BLAST of Cla013859 vs. NCBI nr
Match: gi|645264394|ref|XP_008237656.1| (PREDICTED: uncharacterized protein LOC103336395 [Prunus mume])

HSP 1 Score: 406.0 bits (1042), Expect = 6.0e-110
Identity = 214/322 (66.46%), Postives = 252/322 (78.26%), Query Frame = 1 

Query: 2   LITARNSRLSAVSTSLILPQSG---FRWSSISPRN--------LPFPFVEHRFPSTSNNP 61
           L T  N R SAVS S I+ +      +  S+SP           PFPF+ ++FP+     
Sbjct: 3   LTTTWNLRASAVSLSPIITRRSRTHLQRPSLSPPPKLSCQFWAYPFPFIPNKFPA----- 62

Query: 62  LLLHARKRNSESQPVLKRNIVEEVSEDEEDD--VLLDELEEDEI-MEDDDEDYFEEEYME 121
             LHARKRNSE +P+LK  I+EEVSED+EDD  V+LD+ EEDE+ M+D+D+DY+EEE   
Sbjct: 63  --LHARKRNSEPEPLLKPTIIEEVSEDDEDDDDVILDDFEEDEVLMDDEDDDYYEEE--- 122

Query: 122 DNAEVYEGDGREGGGISLAGTWWDKEALAIAEEVILSFYGDLKIYAFKTVSNSTVRVRIE 181
             AE+Y GDG  GGGISLAG WWD +AL IAEEVILSF GDLKIYAFKT+ N T++VRIE
Sbjct: 123 -TAELYAGDGGGGGGISLAGVWWDNKALEIAEEVILSFDGDLKIYAFKTLPNFTIQVRIE 182

Query: 182 KLSNKSGSPSMEDIEAFSTTYRARLDQAELAKSVPENISLEVSSPGVERVVRIPDELDRF 241
           KLSN+SGSPSMEDIEAFS TYRARLD+AELAKS+PEN+SLEVSSPGVER+VRIP ELDRF
Sbjct: 183 KLSNRSGSPSMEDIEAFSRTYRARLDEAELAKSLPENLSLEVSSPGVERIVRIPHELDRF 242

Query: 242 KERAMYVKYTNNVATASSSSESDGIFKLVSFDIEAKCCTWGLADVKINREKAGKGRPLSK 301
           K+R MYVKY +  A     SE+DG+F+LVSFD+E KCC WGLADV+INREKAGKGRPLSK
Sbjct: 243 KDRPMYVKYFSETAETGVISENDGVFRLVSFDVETKCCVWGLADVRINREKAGKGRPLSK 302

Query: 302 KQREWRLETPFDSLRLVRLYSD 310
           KQR+W+L TPFDSLRLVRLYSD
Sbjct: 303 KQRQWQLNTPFDSLRLVRLYSD 313

[Close]
BLAST of Cla013859 vs. NCBI nr
Match: gi|225457765|ref|XP_002264003.1| (PREDICTED: uncharacterized protein LOC100266148 [Vitis vinifera])

HSP 1 Score: 406.0 bits (1042), Expect = 6.0e-110
Identity = 205/312 (65.71%), Postives = 249/312 (79.81%), Query Frame = 1 

Query: 2   LITARNSRLSAVSTSLILPQSGFRWSSISPRNLPFPFVEHRFPSTSNNPLLLHARKRNSE 61
           LIT  N+R SA+S S +  +S F   S    NL FPF  +  P  S      HA+KR+S+
Sbjct: 3   LITTWNTRASAISFSALRSRSSFHNPSRQNHNLLFPFWPYPLPRISYKSFTAHAKKRSSQ 62

Query: 62  SQPVLKRNIVEEVS-EDEEDDVLLDELEEDEIMEDDDE---DYFEEEYMEDNAEVYEGDG 121
           SQP++K+ IVE++S   ++DD+LLD+ E++ +M+DDD+   + +E+EY+ D+AEVY GDG
Sbjct: 63  SQPLVKQTIVEQISTSQQQDDLLLDDFEDEALMDDDDDNDDEDWEDEYLADDAEVYVGDG 122

Query: 122 REGGGISLAGTWWDKEALAIAEEVILSFYGDLKIYAFKTVSNSTVRVRIEKLSNKSGSPS 181
            EGGGISLAGTWWDKEAL +AEEV +SF GDLKIYAFKT++NST++VRIEKLSNKSGSPS
Sbjct: 123 GEGGGISLAGTWWDKEALLMAEEVSMSFEGDLKIYAFKTLANSTIQVRIEKLSNKSGSPS 182

Query: 182 MEDIEAFSTTYRARLDQAELAKSVPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYT 241
           M DIEAFS+ YRA+LD+AE+A SVPEN+SLEVSSPGVERVV+IP ELDRFKER MYVKY 
Sbjct: 183 MTDIEAFSSIYRAKLDEAEIAGSVPENLSLEVSSPGVERVVQIPQELDRFKERPMYVKYV 242

Query: 242 NNVATASSSSESDGIFKLVSFDIEAKCCTWGLADVKINREKAGKGRPLSKKQREWRLETP 301
                  S+ ESDGIF+LVSFD+E  CCTWGLADV+INR KAGKGRPLSKKQREWRL TP
Sbjct: 243 TEGVAPGSTIESDGIFRLVSFDLETNCCTWGLADVRINRAKAGKGRPLSKKQREWRLNTP 302

Query: 302 FDSLRLVRLYSD 310
           FDSL LVRLYS+
Sbjct: 303 FDSLCLVRLYSE 314

The following BLAST results are available for this feature:
BLAST of Cla013859 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDA0_CUCSA2.0e-15289.39Uncharacterized protein OS=Cucumis sativus GN=Csa_6G338150 PE=3 SV=1[more]
E0CQP0_VITVI4.2e-11065.71Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g15560 PE=4 SV=... [more]
M5W4C9_PRUPE3.0e-10865.22Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008923mg PE=3 SV=1[more]
A0A067L3N7_JATCU5.1e-10869.12Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25228 PE=3 SV=1[more]
A0A061FH06_THECC2.5e-10763.16Uncharacterized protein OS=Theobroma cacao GN=TCM_035449 PE=3 SV=1[more]
BLAST of Cla013859 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659081884|ref|XP_008441560.1|6.5e-15790.97PREDICTED: uncharacterized protein LOC103485652 isoform X3 [Cucumis melo][more]
gi|659081880|ref|XP_008441558.1|7.9e-15588.96PREDICTED: uncharacterized protein LOC103485652 isoform X1 [Cucumis melo][more]
gi|449462174|ref|XP_004148816.1|2.8e-15289.39PREDICTED: uncharacterized protein LOC101204078 [Cucumis sativus][more]
gi|645264394|ref|XP_008237656.1|6.0e-11066.46PREDICTED: uncharacterized protein LOC103336395 [Prunus mume][more]
gi|225457765|ref|XP_002264003.1|6.0e-11065.71PREDICTED: uncharacterized protein LOC100266148 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003728Ribosome_maturation_RimP
Vocabulary: Biological Process
TermDefinition
GO:0042274ribosomal small subunit biogenesis
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042274 ribosomal small subunit biogenesis
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla013859Cla013859.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003728Ribosome maturation factor RimPHAMAPMF_01077RimPcoord: 132..310
score: 11
IPR003728Ribosome maturation factor RimPPFAMPF02576DUF150coord: 154..241
score: 4.0
NoneNo IPR availablePANTHERPTHR34544FAMILY NOT NAMEDcoord: 3..310
score: 3.9E
NoneNo IPR availablePANTHERPTHR34544:SF2SUBFAMILY NOT NAMEDcoord: 3..310
score: 3.9E