Cp4.1LG13g00750 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG13g00750
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionAP2 domain class transcription factor
LocationCp4.1LG13 : 661748 .. 662422 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCATGGACGACGCTTCCACTTTAGATCTCATCAGCCAACATCTCCTCAACGATTTCAACTCCATTGAAGCTTTCACTTCAAGTCTCAACTTCAACAACAATGGAGTAAAGCCTCAAATCTCCGCCGCCCCTTTAAAGGTTAGTCCCCGGCGGCCGTCGCTAAACGTGGCGATTCCGCCCAAGATTTACTCTGTTGAACCCAAATCCGATGTGGGTATGAGCCGGCATTACAGGGGAGTACGCCGGCGGCCGTGGGGGAAATTCGCGGCGGAGATTCGAGACCCCAATAAACGTGGAGCTCGTGTTTGGCTTGGGACTTATGATACCGCCATTGAAGCTGCGAAAGCTTATGACAGAGCTGCTTTCAAGATGAGGGGAAGTAAAGCGATTTTGAATTTTCCTCTTGAAGCTGGAAAAGAGGTGGAAGAGCCGCCGTTGAAGGCGGAGGTTGGCCGGAAAAGGAGGAGAGAAAATGAGGCTGTGGAATTAGGGAACAAGACGGTGAAGAAAGAAGAGTCGCCGGAAACAACAGAGAAAGAAATTCCGGCGAGCGTTTGTCCGTTGACGCCGTCATGTTGGGCGACGGTTTGGGATTGTGATATGAATGGGATTTTTAGCGTGCCGCCGTTATCGCCGTTAATGGGATATCCTCAATGCACAGTCATATAA

mRNA sequence

ATGGCTTCCATGGACGACGCTTCCACTTTAGATCTCATCAGCCAACATCTCCTCAACGATTTCAACTCCATTGAAGCTTTCACTTCAAGTCTCAACTTCAACAACAATGGAGTAAAGCCTCAAATCTCCGCCGCCCCTTTAAAGGTGGAAGAGCCGCCGTTGAAGGCGGAGGTTGGCCGGAAAAGGAGGAGAGAAAATGAGGCTGTGGAATTAGGGAACAAGACGGTGAAGAAAGAAGAGTCGCCGGAAACAACAGAGAAAGAAATTCCGGCGAGCGTTTGTCCGTTGACGCCGTCATGTTGGGCGACGGTTTGGGATTGTGATATGAATGGGATTTTTAGCGTGCCGCCGTTATCGCCGTTAATGGGATATCCTCAATGCACAGTCATATAA

Coding sequence (CDS)

ATGGCTTCCATGGACGACGCTTCCACTTTAGATCTCATCAGCCAACATCTCCTCAACGATTTCAACTCCATTGAAGCTTTCACTTCAAGTCTCAACTTCAACAACAATGGAGTAAAGCCTCAAATCTCCGCCGCCCCTTTAAAGGTGGAAGAGCCGCCGTTGAAGGCGGAGGTTGGCCGGAAAAGGAGGAGAGAAAATGAGGCTGTGGAATTAGGGAACAAGACGGTGAAGAAAGAAGAGTCGCCGGAAACAACAGAGAAAGAAATTCCGGCGAGCGTTTGTCCGTTGACGCCGTCATGTTGGGCGACGGTTTGGGATTGTGATATGAATGGGATTTTTAGCGTGCCGCCGTTATCGCCGTTAATGGGATATCCTCAATGCACAGTCATATAA

Protein sequence

MASMDDASTLDLISQHLLNDFNSIEAFTSSLNFNNNGVKPQISAAPLKVEEPPLKAEVGRKRRRENEAVELGNKTVKKEESPETTEKEIPASVCPLTPSCWATVWDCDMNGIFSVPPLSPLMGYPQCTVI
Homology
[Close]
BLAST of Cp4.1LG13g00750 vs. Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.1e-08
Identity = 37/79 (46.84%), Postives = 46/79 (58.23%), Query Frame = 1 

Query: 56  AEVGRKRRRENEAVELGNKTVKKEESPETTEKEIPASVCPLTPSCWATVWDC-DMNGIFS 115
           A  GRKR RE E  E+    +KKE      E+ +PA+  PLTPS W+ +W+  D  GIF 
Sbjct: 219 ANSGRKRMRETENEEI---VIKKEVK---REERVPAAAAPLTPSSWSAIWEGEDGKGIFE 278

Query: 116 VPPLSPL---MGYPQCTVI 131
           VPPLSPL   M Y Q  +I
Sbjct: 279 VPPLSPLSPHMAYSQLVMI 291

[Close]
BLAST of Cp4.1LG13g00750 vs. TrEMBL
Match: A0A0A0KKV1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G167120 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.0e-21
Identity = 56/86 (65.12%), Postives = 68/86 (79.07%), Query Frame = 1 

Query: 49  VEEPPLKAEVGRKRRRENEA--VELGNKTVKKEESPETTEKEIPASVCPLTPSCWATVWD 108
           VE+P   ++VGRKRRRE+E+  VE+G K +KKEE  ET E  +P +VCPLTPSCWA+VWD
Sbjct: 150 VEDPQSTSDVGRKRRRESESEVVEMGKKEMKKEERSETEEIGVPTTVCPLTPSCWASVWD 209

Query: 109 CDMNGIFSVPPLS--PLMGYPQCTVI 131
            D  GIF+VPPLS  PLMG+PQCTVI
Sbjct: 210 SDGKGIFNVPPLSPYPLMGHPQCTVI 235

[Close]
BLAST of Cp4.1LG13g00750 vs. TrEMBL
Match: D8VD38_ACTDE (Ethylene response factor 11 OS=Actinidia deliciosa GN=ERF11 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.3e-09
Identity = 40/75 (53.33%), Postives = 49/75 (65.33%), Query Frame = 1 

Query: 52  PPLKAEVGRKRRRENEAVELGNKTVKKEESPETTEKEIPASVCPLTPSCWATVWD-CDMN 111
           PP  A+  RKRRRE+E+ E   + VK+E++ E  E E   +V PLTPS W  VWD  DM 
Sbjct: 193 PP--ADTRRKRRREDESEEREKREVKREKAEEEEEAEGVTAVAPLTPSNWTAVWDWTDMK 252

Query: 112 GIFSVPPLSPLMGYP 126
           GIF VPPLSPL  +P
Sbjct: 253 GIFDVPPLSPLSPHP 265

[Close]
BLAST of Cp4.1LG13g00750 vs. TrEMBL
Match: D5L0Y8_MALDO (AP2 domain class transcription factor OS=Malus domestica GN=AP2D4 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.3e-08
Identity = 46/107 (42.99%), Postives = 58/107 (54.21%), Query Frame = 1 

Query: 44  AAPLKVEEPPLKAEVGRKRRRE-------NEAVELGNKTVKKEESPE----TTEKEIPAS 103
           +A L  + P L +   RKRRRE       N    + NK +KKEE  +    + ++ +  +
Sbjct: 211 SAELPADHPLLAS---RKRRREHSTEIHENSGEMIRNKEIKKEEDVQEMKSSAQERVSTA 270

Query: 104 VCPLTPSCWATVWDC---DMNGIFSVPPLSPL------MGYPQCTVI 131
           VCPLTPS WA VWD    +  GIFSVPPLSPL      MGYP   VI
Sbjct: 271 VCPLTPSSWAAVWDMSKENEQGIFSVPPLSPLSPHPNFMGYPPLVVI 314

[Close]
BLAST of Cp4.1LG13g00750 vs. TrEMBL
Match: X2BY49_PANQU (Transcription factor ERF1 OS=Panax quinquefolius PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-07
Identity = 37/70 (52.86%), Postives = 45/70 (64.29%), Query Frame = 1 

Query: 57  EVGRKRRRENEAVELGNKTVKKEESPETTEKEIPASVCPLTPSCWATVWD-CDMNGIFSV 116
           +VGRKR RE EA +  +K VK+EE  + + K     VCPLTPS W  VW+  D  GIF +
Sbjct: 227 KVGRKRGREAEAEDGESKEVKREEVADGSVKT-ETGVCPLTPSSWTAVWEGGDEKGIFEI 286

Query: 117 PPLSPLMGYP 126
           PPLSPL  YP
Sbjct: 287 PPLSPLSPYP 295

[Close]
BLAST of Cp4.1LG13g00750 vs. TrEMBL
Match: D5L143_MALDO (AP2 domain class transcription factor OS=Malus domestica GN=AP2D60 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 46/106 (43.40%), Postives = 56/106 (52.83%), Query Frame = 1 

Query: 44  AAPLKVEEPPLKAEVGRKRRREN--EAVE-----LGNKTVKKEESPETT----EKEIPAS 103
           +A L  + P L   V RKRRRE   E+ E     + NK +KKEE  +      ++ +  +
Sbjct: 216 SAELSADHPLL---VSRKRRRERITESHESSGEMIRNKEIKKEEDVQDVKIPAQERVSTA 275

Query: 104 VCPLTPSCWATVWDCDMN---GIFSVPPLSPL------MGYPQCTV 130
           VCPLTPS W  VWD       GIFSVPPLSPL      MGY Q  V
Sbjct: 276 VCPLTPSSWTAVWDLSKENELGIFSVPPLSPLSPHPNFMGYSQLMV 318

[Close]
BLAST of Cp4.1LG13g00750 vs. NCBI nr
Match: gi|659073275|ref|XP_008436974.1| (PREDICTED: ethylene-responsive transcription factor ERF105 [Cucumis melo])

HSP 1 Score: 116.7 bits (291), Expect = 3.0e-23
Identity = 59/86 (68.60%), Postives = 71/86 (82.56%), Query Frame = 1 

Query: 49  VEEPPLKAEVGRKRRRENEA--VELGNKTVKKEESPETTEKEIPASVCPLTPSCWATVWD 108
           VE+PP  ++VGRKRRRE+E+  VE+G K +KKEES ET E  +P++VCPLTPSCWATVWD
Sbjct: 151 VEDPPSTSDVGRKRRRESESEVVEMGKKEMKKEESSETGEIGVPSTVCPLTPSCWATVWD 210

Query: 109 CDMNGIFSVPPLS--PLMGYPQCTVI 131
            D  GIF+VPPLS  PLMG+PQCTVI
Sbjct: 211 SDGKGIFNVPPLSPYPLMGHPQCTVI 236

[Close]
BLAST of Cp4.1LG13g00750 vs. NCBI nr
Match: gi|778700301|ref|XP_004143677.2| (PREDICTED: ethylene-responsive transcription factor ERF105 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 2.8e-21
Identity = 56/86 (65.12%), Postives = 68/86 (79.07%), Query Frame = 1 

Query: 49  VEEPPLKAEVGRKRRRENEA--VELGNKTVKKEESPETTEKEIPASVCPLTPSCWATVWD 108
           VE+P   ++VGRKRRRE+E+  VE+G K +KKEE  ET E  +P +VCPLTPSCWA+VWD
Sbjct: 150 VEDPQSTSDVGRKRRRESESEVVEMGKKEMKKEERSETEEIGVPTTVCPLTPSCWASVWD 209

Query: 109 CDMNGIFSVPPLS--PLMGYPQCTVI 131
            D  GIF+VPPLS  PLMG+PQCTVI
Sbjct: 210 SDGKGIFNVPPLSPYPLMGHPQCTVI 235

[Close]
BLAST of Cp4.1LG13g00750 vs. NCBI nr
Match: gi|672206915|ref|XP_008779563.1| (PREDICTED: ethylene-responsive transcription factor ERF105-like, partial [Phoenix dactylifera])

HSP 1 Score: 75.5 bits (184), Expect = 7.7e-11
Identity = 49/92 (53.26%), Postives = 57/92 (61.96%), Query Frame = 1 

Query: 53  PLKAEVGRKRRR------ENEAVELGNKTVKKEESP---ETTEKEIPASVCPLTPSCWAT 112
           PL+A  G+++R       E EA E   + VKKE SP   E  E+ IP SVCPLTPS W T
Sbjct: 231 PLEAAAGKRKREAAIAAAEEEAEEEEMRPVKKERSPSIEEVVEENIP-SVCPLTPSSWTT 290

Query: 113 VWD-CDMNGIFSVPPLSPL-----MGYPQCTV 130
           VWD  DM GIF+VPPLSPL      G+PQ TV
Sbjct: 291 VWDGADMMGIFNVPPLSPLSPHPSFGFPQLTV 321

[Close]
BLAST of Cp4.1LG13g00750 vs. NCBI nr
Match: gi|300079018|gb|ADJ67440.1| (ethylene response factor 11 [Actinidia deliciosa])

HSP 1 Score: 70.1 bits (170), Expect = 3.3e-09
Identity = 40/75 (53.33%), Postives = 49/75 (65.33%), Query Frame = 1 

Query: 52  PPLKAEVGRKRRRENEAVELGNKTVKKEESPETTEKEIPASVCPLTPSCWATVWD-CDMN 111
           PP  A+  RKRRRE+E+ E   + VK+E++ E  E E   +V PLTPS W  VWD  DM 
Sbjct: 193 PP--ADTRRKRRREDESEEREKREVKREKAEEEEEAEGVTAVAPLTPSNWTAVWDWTDMK 252

Query: 112 GIFSVPPLSPLMGYP 126
           GIF VPPLSPL  +P
Sbjct: 253 GIFDVPPLSPLSPHP 265

[Close]
BLAST of Cp4.1LG13g00750 vs. NCBI nr
Match: gi|672125693|ref|XP_008786269.1| (PREDICTED: ethylene-responsive transcription factor ERF105-like [Phoenix dactylifera])

HSP 1 Score: 69.7 bits (169), Expect = 4.2e-09
Identity = 47/104 (45.19%), Postives = 60/104 (57.69%), Query Frame = 1 

Query: 31  LNFNNNGVKPQISAAPLKVEEPPLKAEVGRKRRRE----NEAVELGNKTVKKEESPE--- 90
           LNF N     +I ++   +  PP       KR+R      EA E   + +KKE SPE   
Sbjct: 176 LNFPN-----EIGSSGRCIPPPPAPLATAGKRKRAPAAAEEAKEGEMRPIKKERSPEMEE 235

Query: 91  TTEKEIPASVCPLTPSCWATVWD-CDMNGIFSVPPLSPLMGYPQ 127
           + E+ IP SVCPLTPS W TVWD  D+ G+F+VPPLSPL  +PQ
Sbjct: 236 SAEENIP-SVCPLTPSIWTTVWDGADVMGVFTVPPLSPLSPHPQ 273

The following BLAST results are available for this feature:
BLAST of Cp4.1LG13g00750 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ERF5_TOBAC6.1e-0846.84Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=... [more]
BLAST of Cp4.1LG13g00750 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKV1_CUCSA2.0e-2165.12Uncharacterized protein OS=Cucumis sativus GN=Csa_5G167120 PE=4 SV=1[more]
D8VD38_ACTDE2.3e-0953.33Ethylene response factor 11 OS=Actinidia deliciosa GN=ERF11 PE=2 SV=1[more]
D5L0Y8_MALDO4.3e-0842.99AP2 domain class transcription factor OS=Malus domestica GN=AP2D4 PE=2 SV=1[more]
X2BY49_PANQU1.2e-0752.86Transcription factor ERF1 OS=Panax quinquefolius PE=2 SV=1[more]
D5L143_MALDO1.1e-0643.40AP2 domain class transcription factor OS=Malus domestica GN=AP2D60 PE=2 SV=1[more]
BLAST of Cp4.1LG13g00750 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG13g00750 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659073275|ref|XP_008436974.1|3.0e-2368.60PREDICTED: ethylene-responsive transcription factor ERF105 [Cucumis melo][more]
gi|778700301|ref|XP_004143677.2|2.8e-2165.12PREDICTED: ethylene-responsive transcription factor ERF105 [Cucumis sativus][more]
gi|672206915|ref|XP_008779563.1|7.7e-1153.26PREDICTED: ethylene-responsive transcription factor ERF105-like, partial [Phoeni... [more]
gi|300079018|gb|ADJ67440.1|3.3e-0953.33ethylene response factor 11 [Actinidia deliciosa][more]
gi|672125693|ref|XP_008786269.1|4.2e-0945.19PREDICTED: ethylene-responsive transcription factor ERF105-like [Phoenix dactyli... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0050896 response to stimulus
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG13g00750.1Cp4.1LG13g00750.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG13g00750CmaCh02G009830Cucurbita maxima (Rimu)cmacpeB603
Cp4.1LG13g00750CmaCh15G013610Cucurbita maxima (Rimu)cmacpeB306
Cp4.1LG13g00750CmoCh15G014220Cucurbita moschata (Rifu)cmocpeB269
Cp4.1LG13g00750CmoCh02G009910Cucurbita moschata (Rifu)cmocpeB552
Cp4.1LG13g00750Cla003618Watermelon (97103) v1cpewmB186
Cp4.1LG13g00750ClCG01G004710Watermelon (Charleston Gray)cpewcgB168
Cp4.1LG13g00750Lsi09G004890Bottle gourd (USVL1VR-Ls)cpelsiB133
Cp4.1LG13g00750MELO3C005465.2Melon (DHL92) v3.6.1cpemedB174
Cp4.1LG13g00750CsaV3_5G004900Cucumber (Chinese Long) v3cpecucB0224
Cp4.1LG13g00750BhiUN395G15Wax gourdcpewgoB0246
Cp4.1LG13g00750CsGy5G004910Cucumber (Gy14) v2cgybcpeB608
Cp4.1LG13g00750Carg20815Silver-seed gourdcarcpeB1438
Cp4.1LG13g00750Carg08494Silver-seed gourdcarcpeB0995
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG13g00750Cp4.1LG05g07350Cucurbita pepo (Zucchini)cpecpeB222
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG13g00750Cucumber (Gy14) v1cgycpeB0338
Cp4.1LG13g00750Wild cucumber (PI 183967)cpecpiB187
Cp4.1LG13g00750Cucumber (Chinese Long) v2cpecuB186
Cp4.1LG13g00750Melon (DHL92) v3.5.1cpemeB147