Cp4.1LG12g11820 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG12g11820
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG12 : 8472529 .. 8475867 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGGGATTAGGATATGGAGCTTAGTTCCTATCGTGTATATGGGGGGATTTCGCATTAATGTTAATATTTTTTATACTCAAAATTTCCCCTTCTTTTTCTCGTAAGAAGAACAAATCTATGGATGACCATGAGAAAATATTATTTTCTGATAATAAACAGCCTCAACTCAACCAAAGCCAAGGAAGTTTTGCATGATTATTATTATTATTCAATTAGAATTATTTAGGTGAAACAAAAGAGCTCTGATAGTTTGGATGAAAGCATACCAATAAAAATAGCAAGTTCCTAGGAAATCTGTGTTTTCCTTAAGAGAAACTGTTTGTTTGTCTGATCAAAATGTCCCCCAAAATAAAGCTCTGGATATGCAGAATTACAAAGTTTGGACTCGAACCCCATGAGCATGCCTCGCCCAGCAGAGGAAAATTTTGGTGTTAGGAAAGTAGTATATCAAATAGTATTCTGGTGCATTCCCGTGTGTCTTGCTTATTGAAGCTTCCTTTATGGAGTCTACTCCTGCTTTTATGGATAAACTTGCAGCTTGGATTGCACAACTTAATGTAGAGCTAGAATTGATTCATTTTGAAACTGTTGTGTCTCGCTTCATTTCAGCTGCCATTAACATTCGGAAGAGGTATAACTTCCTTTTGGGAACATTTCTAAATTAATGTAATTCCAACGTTTGGTTCCACAATGACAATCAGCTAATGAACTCTGCTCTACTCAGTGTAAAAAAATTTCTAGGTTTCTTGATGATTGCTCGAAGATGTAATGCACACATCTCCGTCTCATTAGTTAACGATGGTATAATGTCCAATCTTCAGGAAATCACCCTATCTAGCAACTATGCCAAGTGCTAAATGGTCTATCAGTGGAATGTTCAAATTAGCCTTCAAGCAAGTAGTAACGGATGGCCTATTGAGCCCTACTTGAAATTCTGTGTCCAATTTCCCTCGCGCCAAATCCCCATTAGTCACCTCATACCCAACATTAGAAATTTGCTGCAATGGTTCCCAAATTCATTAAGCAGCCTAAACCATTCATCATGGTAGGTAGTACAGACCATTATATCTATGTGAAGTACATGATCATGCAGGTTGGATTTGGTCTTGCAAATAATCTAGTATCGATGGAATGACTTCTTCACATCTCTTGCATGTTGCAAGGAAACTTATTGTCCTATTCTTTATATATGCTTCTTAGTGAGGTGACACTTCATTATTGTGTGCAAAACAAATTGACGGAGCACATTTATATTCTGATACTATATTGTTCATGTGACAAATGATGCAAGGAAAAAAAGGTTGAAGTTTTCACTGGATGGAAAATCTTCTCATCTGAGTACTAAGAACAATTTTTTTATATGGATCTCCAACCCCGAAATTCATTCACCTTAGAAGCATTAAAATAAGTACTTTCTTTTCTGTGAGAGTTCATCTTGCTTATCTCGTATATTGCAGGAATGAACTCAACAAGATTGTGATGAAGGTTATTCATTCATGAGGTTTAATTTAACTCTTGTGCGCCATGAATGAGGCCATAACAAAATACCAANGTTTAATTTAACTCTTGTGCGCCATGAATGAGGCCATAACAAAATACCAACCAAACAGAACCTACTTCACTCCCACAGAAAAAGAAAGAAGAATAAAANAAAATACCAACCAAACAGAACCTACTTCACTCCCACAGAAAAAGAAAGAAGCATAAAAAAAATGCAAACAAACTCTTACCCAAGGGTCTTAGGAATTCTGGACTGTATAAATACCATTGTTATCAGTCTGCAACAGCCATAAAGCCTTCCCAGGTTCCTGTGTTCTTGCTTTGACTCGGAAAATCTAGATAGCTTACTTGAATGGGGAGATTCAAGATCCTTTTATTTGCTGTAACTTTGTTCTTGGCTCTGATTCCTGACACAGAGGCTCAATGGCAGCCACCGAAAGTTGCTCCTCGGCCACCCTGCCCCTCCCAGATCGCGCTAGCAAACCTTGCTTGCGCAATGCTGCCTTACTCCACCATGGCCCTGTCACCTCCATCAGTGTCACTCTCTGATAACCATGAAAGCCACGGCCCTCCGCCAAACCACAGACACTTGCACACGCACTGGCACGGACACCAGCACCAGATATCCCTATCGCCAATGGAGGAGAATTGTTGTAAGTGGGTGCAGCAGTTGGACAGTCAATGTTTATGCAGGCTGTTGTCTCGGTTGCCTGCATTCTTAGAGAGGCCTCAACATAAAATTTCTTTTTCTGTTGGCGGTTCGTGCAATGCTACATTCTCATGCGGAGGAGGAACCATAATTTAAGCTAAAATTTTCGGGTTATGCTCGAGTCATAGTGTGATTCAGTCCCTCCTTATCTTTCTCAGTGTTGGATTTTCATGTCTGTGTTGTGTTGATGTTATATGATTCACTAGTTCTGTTGTTAAGAAATACAAATGTCACTTAAAACAGTTTCTAAATGGTGTTCGTATAGGTTCCAAATTTAGGGGGTTATTAGGTTCAAATACAACTAAAAATGCACCAAAGATGTCAAAGACAATAATATTTTAGTTTTAGGGCTCATTACTCATGTACTCTGATATGATATCTTGGAAAATGCTACAAATTTCGTTGCCAATGTTAGGAGTATTTGCTTGACTATCATACGATATGATATGAGAATGTTATCAACAATGTATCCGCCTACCAAAACTAGTGGCACCATTTTTTTTTACAGTTTGTGGATGGTAGATTTCAGACCTATAATAGCATGATTCTCTTGCCTCGGATTTTCTACATCGCTCTACTTCCTTCCTATGAATAATAGGACAACTACCTAACTCTTTGTTTATTTAGTTGTGGAAGTTACTTATAAGGTATTAAATCTATTTATAATCTATTATTCTCATGAGATAATTGTCTTACCCTCTAACATATTTTATGATCATATCTATTGTAACAACTTAAACTCATCAATAGCTGATATTGTCCTTTGTAGGCTTTCTCTTTCGATCTTTCCTAGTGGTGTGGAAACCTCTCCCTGTAGACGTGTTTTAAAAATTTTGAGGGGAAAGCATAAGAAGGACAATATCTATCGTCTTTATATATCCATTTGCTAGGATTTGAAGTCATAATGCCTAGTAGTGCTATGATTATCCTATAATGACTTTATGAAGGCATGCTTTGTTTCTTTTCTTTCGACTTTATTAATTCAATGCTCTCAATTACAACGATCACTTATATTCCAAGAAGTTTCTTTTTATAGGTAACTCAACAACAAGATCAAGTTCGTTGGGGTCATTTCACCTTATTCGTTTATCAACTTTAGAATTTTGCCTTGAATGATGGAAGTTGA

mRNA sequence

ATGACTTCCTTTATGGAGTCTACTCCTGCTTTTATGGATAAACTTGCAGCTTGGATTGCACAACTTAATGTAGAGCTAGAATTGATTCATTTTGAAACTGTTGTGTCTCGCTTCATTTCAGCTGCCATTAACATTCGGAAGAGGAATGAACTCAACAAGATTGTGATGAAGATCCTTTTATTTGCTGTAACTTTGTTCTTGGCTCTGATTCCTGACACAGAGGCTCAATGGCAGCCACCGAAAGTTGCTCCTCGGCCACCCTGCCCCTCCCAGATCGCGCTAGCAAACCTTGCTTGCGCAATGCTGCCTTACTCCACCATGGCCCTGTCACCTCCATCAGTGTCACTCTCTGATAACCATGAAAGCCACGGCCCTCCGCCAAACCACAGACACTTGCACACGCACTGGCACGGACACCAGCACCAGATATCCCTATCGCCAATGGAGGAGAATTGTTTTACTTATAAGGTAACTCAACAACAAGATCAAAATTTTGCCTTGAATGATGGAAGTTGA

Coding sequence (CDS)

ATGACTTCCTTTATGGAGTCTACTCCTGCTTTTATGGATAAACTTGCAGCTTGGATTGCACAACTTAATGTAGAGCTAGAATTGATTCATTTTGAAACTGTTGTGTCTCGCTTCATTTCAGCTGCCATTAACATTCGGAAGAGGAATGAACTCAACAAGATTGTGATGAAGATCCTTTTATTTGCTGTAACTTTGTTCTTGGCTCTGATTCCTGACACAGAGGCTCAATGGCAGCCACCGAAAGTTGCTCCTCGGCCACCCTGCCCCTCCCAGATCGCGCTAGCAAACCTTGCTTGCGCAATGCTGCCTTACTCCACCATGGCCCTGTCACCTCCATCAGTGTCACTCTCTGATAACCATGAAAGCCACGGCCCTCCGCCAAACCACAGACACTTGCACACGCACTGGCACGGACACCAGCACCAGATATCCCTATCGCCAATGGAGGAGAATTGTTTTACTTATAAGGTAACTCAACAACAAGATCAAAATTTTGCCTTGAATGATGGAAGTTGA

Protein sequence

MTSFMESTPAFMDKLAAWIAQLNVELELIHFETVVSRFISAAINIRKRNELNKIVMKILLFAVTLFLALIPDTEAQWQPPKVAPRPPCPSQIALANLACAMLPYSTMALSPPSVSLSDNHESHGPPPNHRHLHTHWHGHQHQISLSPMEENCFTYKVTQQQDQNFALNDGS
BLAST of Cp4.1LG12g11820 vs. TrEMBL
Match: A0A0A0KAN7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G392440 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.9e-20
Identity = 62/107 (57.94%), Postives = 73/107 (68.22%), Query Frame = 1

Query: 57  KILLFAVTLFLALIPDTEAQWQPPKVAPRPPCPSQIALANLACAMLPYSTM-ALSPPSVS 116
           KIL+ +V LFL LI D+E+QWQPP VAPRP C SQI LAN ACA LPY+ +    PPS S
Sbjct: 5   KILILSVVLFLTLITDSESQWQPPGVAPRPLCASQITLANYACATLPYAKLPPPPPPSSS 64

Query: 117 LSDNHESHGPPPNHRHLHTHWHGHQHQISLSPMEENCFTYKVTQQQD 163
           LS+N +S G P  H H H H H H H+I L+P+EENC   K  QQ D
Sbjct: 65  LSNNQDSQGSPV-HGHHHGHHHRHHHKIPLTPIEENC--CKWVQQVD 108

BLAST of Cp4.1LG12g11820 vs. TrEMBL
Match: A0A0B2QE80_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_033508 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-09
Identity = 40/98 (40.82%), Postives = 58/98 (59.18%), Query Frame = 1

Query: 55  VMKILLFAVTLFLALIPDTEAQWQPPKVAPRPPCPSQIALANLACAMLPYSTMALSPPSV 114
           +  ++  A+TLFLA++P  E+Q +P    PRP C SQ AL N AC+ LP+S   + P S 
Sbjct: 3   IFNLIALALTLFLAIVPKMESQIKPIPKTPRPLCASQFALVNYACSRLPFSP-GVPPDSP 62

Query: 115 SLSDNHESHGPPPNHRHLHTHWHGHQHQISLSPMEENC 153
           S  + + +H    N  H H H HGH+H+   +P E+NC
Sbjct: 63  SPDEENNNH---HNRSHRHGHRHGHRHRHHQTPDEDNC 96

BLAST of Cp4.1LG12g11820 vs. TrEMBL
Match: K7KF74_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-09
Identity = 40/98 (40.82%), Postives = 58/98 (59.18%), Query Frame = 1

Query: 55  VMKILLFAVTLFLALIPDTEAQWQPPKVAPRPPCPSQIALANLACAMLPYSTMALSPPSV 114
           +  ++  A+TLFLA++P  E+Q +P    PRP C SQ AL N AC+ LP+S   + P S 
Sbjct: 3   IFNLIALALTLFLAIVPKMESQIKPIPKTPRPLCASQFALVNYACSRLPFSP-GVPPDSP 62

Query: 115 SLSDNHESHGPPPNHRHLHTHWHGHQHQISLSPMEENC 153
           S  + + +H    N  H H H HGH+H+   +P E+NC
Sbjct: 63  SPDEENNNH---HNRSHRHGHRHGHRHRHHQTPDEDNC 96

BLAST of Cp4.1LG12g11820 vs. TrEMBL
Match: V7CW99_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G149300g PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-08
Identity = 43/103 (41.75%), Postives = 57/103 (55.34%), Query Frame = 1

Query: 55  VMKILLFAVTLFLALIPDTEAQWQPPKV----APRPPCPSQIALANLACAMLPYSTMALS 114
           ++ ++  A+ L LAL+P  E+  +PP +    APRP C SQ AL N AC+ LP+S   + 
Sbjct: 3   ILNLITVALAL-LALVPKMESHIRPPLIPVSKAPRPLCASQFALVNYACSRLPFSP-GVQ 62

Query: 115 PPSVSLSDNHESHGP-PPNHRHLHTHWHGHQHQISLSPMEENC 153
           P S    D  E HG    NH H H H HGH H+   +P E NC
Sbjct: 63  PDSPPSPDEEEGHGERHQNHTHRHGHRHGHSHRHHQTPEENNC 103

BLAST of Cp4.1LG12g11820 vs. TrEMBL
Match: A0A068U4W8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00016024001 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.3e-08
Identity = 46/94 (48.94%), Postives = 56/94 (59.57%), Query Frame = 1

Query: 57  KILLFAVTL-FLALIPDTEAQWQP----PKVAPRPPCPSQIALANLACAMLPY-STMALS 116
           KIL  AV L FL + P T  QW P    P +APRP C SQ ALA+ ACA LPY  + + S
Sbjct: 5   KILKLAVFLVFLVVQPRTNGQWIPRPIPPPIAPRPLCASQFALASHACAFLPYVPSPSPS 64

Query: 117 PPSVSLSDNHES--HGPPPNHRHLHTHWHGHQHQ 143
           PP  SL + H+S  H    +H+H H H H HQH+
Sbjct: 65  PPPPSLIERHDSLKHQLSHDHKHEHEHEHEHQHE 98

BLAST of Cp4.1LG12g11820 vs. TAIR10
Match: AT3G63095.1 (AT3G63095.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 49.3 bits (116), Expect = 2.8e-06
Identity = 38/90 (42.22%), Postives = 43/90 (47.78%), Query Frame = 1

Query: 56  MKILLFAVTLFLALIPDTEAQWQPPKVAPRPPCPSQIALANLACAMLPYSTMALSPPSVS 115
           M  L  AVTL LAL   T  Q       PRP C SQ ALAN AC+ LP  T+   PP   
Sbjct: 1   MDTLFIAVTLALALSSFTRGQRVIQIPPPRPLCASQYALANYACSRLPMHTV---PPPAP 60

Query: 116 LSDNHESHGPPP----NHRHLHTHWHGHQH 142
           ++       PPP    +H H H H H H H
Sbjct: 61  ITPPPAPIAPPPPEHDHHDHDHDHDHDHDH 87

BLAST of Cp4.1LG12g11820 vs. NCBI nr
Match: gi|659101011|ref|XP_008451383.1| (PREDICTED: protein FAM76B [Cucumis melo])

HSP 1 Score: 114.8 bits (286), Expect = 1.5e-22
Identity = 67/107 (62.62%), Postives = 73/107 (68.22%), Query Frame = 1

Query: 57  KILLFAVTLFLALIPDTEAQWQPPKVAPRPPCPSQIALANLACAMLPYS-TMALSPPSVS 116
           KIL+F+V  FLALI DT  QWQPP VAPRP C SQIALAN ACA LPYS  +   PPS S
Sbjct: 5   KILIFSVVFFLALITDTGGQWQPPAVAPRPLCASQIALANYACATLPYSKLLPPPPPSSS 64

Query: 117 LSDNHESHGPPPNHRHLHTHWHGHQHQISLSPMEENCFTYKVTQQQD 163
           LS NH+S G P  H H H H H H H+I LSP+EENC   K  QQ D
Sbjct: 65  LSSNHDSQGSPV-HTHHHGHHHRHHHKIPLSPIEENC--CKWVQQVD 108

BLAST of Cp4.1LG12g11820 vs. NCBI nr
Match: gi|700189638|gb|KGN44871.1| (hypothetical protein Csa_7G392440 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 4.1e-20
Identity = 62/107 (57.94%), Postives = 73/107 (68.22%), Query Frame = 1

Query: 57  KILLFAVTLFLALIPDTEAQWQPPKVAPRPPCPSQIALANLACAMLPYSTM-ALSPPSVS 116
           KIL+ +V LFL LI D+E+QWQPP VAPRP C SQI LAN ACA LPY+ +    PPS S
Sbjct: 5   KILILSVVLFLTLITDSESQWQPPGVAPRPLCASQITLANYACATLPYAKLPPPPPPSSS 64

Query: 117 LSDNHESHGPPPNHRHLHTHWHGHQHQISLSPMEENCFTYKVTQQQD 163
           LS+N +S G P  H H H H H H H+I L+P+EENC   K  QQ D
Sbjct: 65  LSNNQDSQGSPV-HGHHHGHHHRHHHKIPLTPIEENC--CKWVQQVD 108

BLAST of Cp4.1LG12g11820 vs. NCBI nr
Match: gi|571445728|ref|XP_006576887.1| (PREDICTED: uncharacterized protein LOC102666530 [Glycine max])

HSP 1 Score: 71.2 bits (173), Expect = 1.9e-09
Identity = 40/98 (40.82%), Postives = 58/98 (59.18%), Query Frame = 1

Query: 55  VMKILLFAVTLFLALIPDTEAQWQPPKVAPRPPCPSQIALANLACAMLPYSTMALSPPSV 114
           +  ++  A+TLFLA++P  E+Q +P    PRP C SQ AL N AC+ LP+S   + P S 
Sbjct: 3   IFNLIALALTLFLAIVPKMESQIKPIPKTPRPLCASQFALVNYACSRLPFSP-GVPPDSP 62

Query: 115 SLSDNHESHGPPPNHRHLHTHWHGHQHQISLSPMEENC 153
           S  + + +H    N  H H H HGH+H+   +P E+NC
Sbjct: 63  SPDEENNNH---HNRSHRHGHRHGHRHRHHQTPDEDNC 96

BLAST of Cp4.1LG12g11820 vs. NCBI nr
Match: gi|1009147758|ref|XP_015891580.1| (PREDICTED: uncharacterized protein DDB_G0272724 [Ziziphus jujuba])

HSP 1 Score: 70.9 bits (172), Expect = 2.5e-09
Identity = 41/88 (46.59%), Postives = 54/88 (61.36%), Query Frame = 1

Query: 67  LALIPDTEAQWQPPKVAPRPPCPSQIALANLACAMLPYSTMALSPPSVSLSDNH--ESHG 126
           L L+P  E+Q  PP VAPRP C SQ ALA+ AC+++P++ +   PPS     +    SHG
Sbjct: 7   LLLVPKLESQVLPP-VAPRPLCASQFALASYACSLIPFTPLPPEPPSPPSPPDFLGHSHG 66

Query: 127 PPPNHRHLHTHWHGHQHQISLSPMEENC 153
               HRH H H HGH+H+   SP EE+C
Sbjct: 67  HGHGHRHGHGHRHGHRHRHRESPAEESC 93

BLAST of Cp4.1LG12g11820 vs. NCBI nr
Match: gi|593798734|ref|XP_007162405.1| (hypothetical protein PHAVU_001G149300g [Phaseolus vulgaris])

HSP 1 Score: 68.2 bits (165), Expect = 1.6e-08
Identity = 43/103 (41.75%), Postives = 57/103 (55.34%), Query Frame = 1

Query: 55  VMKILLFAVTLFLALIPDTEAQWQPPKV----APRPPCPSQIALANLACAMLPYSTMALS 114
           ++ ++  A+ L LAL+P  E+  +PP +    APRP C SQ AL N AC+ LP+S   + 
Sbjct: 3   ILNLITVALAL-LALVPKMESHIRPPLIPVSKAPRPLCASQFALVNYACSRLPFSP-GVQ 62

Query: 115 PPSVSLSDNHESHGP-PPNHRHLHTHWHGHQHQISLSPMEENC 153
           P S    D  E HG    NH H H H HGH H+   +P E NC
Sbjct: 63  PDSPPSPDEEEGHGERHQNHTHRHGHRHGHSHRHHQTPEENNC 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KAN7_CUCSA2.9e-2057.94Uncharacterized protein OS=Cucumis sativus GN=Csa_7G392440 PE=4 SV=1[more]
A0A0B2QE80_GLYSO1.3e-0940.82Uncharacterized protein OS=Glycine soja GN=glysoja_033508 PE=4 SV=1[more]
K7KF74_SOYBN1.3e-0940.82Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
V7CW99_PHAVU1.1e-0841.75Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G149300g PE=4 SV=1[more]
A0A068U4W8_COFCA3.3e-0848.94Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00016024001 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G63095.12.8e-0642.22 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
Match NameE-valueIdentityDescription
gi|659101011|ref|XP_008451383.1|1.5e-2262.62PREDICTED: protein FAM76B [Cucumis melo][more]
gi|700189638|gb|KGN44871.1|4.1e-2057.94hypothetical protein Csa_7G392440 [Cucumis sativus][more]
gi|571445728|ref|XP_006576887.1|1.9e-0940.82PREDICTED: uncharacterized protein LOC102666530 [Glycine max][more]
gi|1009147758|ref|XP_015891580.1|2.5e-0946.59PREDICTED: uncharacterized protein DDB_G0272724 [Ziziphus jujuba][more]
gi|593798734|ref|XP_007162405.1|1.6e-0841.75hypothetical protein PHAVU_001G149300g [Phaseolus vulgaris][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g11820.1Cp4.1LG12g11820.1mRNA


The following gene(s) are paralogous to this gene:

None