CSPI07G16880 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G16880
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	AAA ATPase containing von Willebrand factor type A
Location	Chr7 : 15432772 .. 15433221 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAGATTCAAGATCCTTATACTTTCAGTAGTATTGTTCTTGACTCTGATTACTGACTCAGAGAGTCAATGGCAGCCACCGGGCGTTGCTCCTCGACCACTCTGCGCCTCCCAGATTACGCTTGCAAACTATGCTTGTGCAACGTTGCCTTACGCCAAACTCCCGCCACCTCCGCCCCCATCATCATCACTCTCTAATAACCAAGATAGCCAAGGCTCTCCTGTCCACGGACACCATCACGGACACCATCACAGACACCACCACAAGATCCCTCTAACGCCAATAGAGGAGAATTGTTGCAAGTGGGTGCAGCAGGTGGATAGTGAATGTGTATGCGAGCTGTTGTCCCGATTGCCTGCTTTCTTAAAGAGGCCTATACATAACTTTTCCGTTACCATCGGTGGCTCATGTAATGCTACATACTGGTGCGGAGGAATGAAAATCTAA

mRNA sequence

ATGGGGAGATTCAAGATCCTTATACTTTCAGTAGTATTGTTCTTGACTCTGATTACTGACTCAGAGAGTCAATGGCAGCCACCGGGCGTTGCTCCTCGACCACTCTGCGCCTCCCAGATTACGCTTGCAAACTATGCTTGTGCAACGTTGCCTTACGCCAAACTCCCGCCACCTCCGCCCCCATCATCATCACTCTCTAATAACCAAGATAGCCAAGGCTCTCCTGTCCACGGACACCATCACGGACACCATCACAGACACCACCACAAGATCCCTCTAACGCCAATAGAGGAGAATTGTTGCAAGTGGGTGCAGCAGGTGGATAGTGAATGTGTATGCGAGCTGTTGTCCCGATTGCCTGCTTTCTTAAAGAGGCCTATACATAACTTTTCCGTTACCATCGGTGGCTCATGTAATGCTACATACTGGTGCGGAGGAATGAAAATCTAA

Coding sequence (CDS)

ATGGGGAGATTCAAGATCCTTATACTTTCAGTAGTATTGTTCTTGACTCTGATTACTGACTCAGAGAGTCAATGGCAGCCACCGGGCGTTGCTCCTCGACCACTCTGCGCCTCCCAGATTACGCTTGCAAACTATGCTTGTGCAACGTTGCCTTACGCCAAACTCCCGCCACCTCCGCCCCCATCATCATCACTCTCTAATAACCAAGATAGCCAAGGCTCTCCTGTCCACGGACACCATCACGGACACCATCACAGACACCACCACAAGATCCCTCTAACGCCAATAGAGGAGAATTGTTGCAAGTGGGTGCAGCAGGTGGATAGTGAATGTGTATGCGAGCTGTTGTCCCGATTGCCTGCTTTCTTAAAGAGGCCTATACATAACTTTTCCGTTACCATCGGTGGCTCATGTAATGCTACATACTGGTGCGGAGGAATGAAAATCTAA

Homology

[Close]

BLAST of CSPI07G16880 vs. TrEMBL
Match: A0A0A0KAN7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G392440 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 3.2e-84
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1


Query: 1   MGRFKILILSVVLFLTLITDSESQWQPPGVAPRPLCASQITLANYACATLPYAKLPPPPP 60
           MGRFKILILSVVLFLTLITDSESQWQPPGVAPRPLCASQITLANYACATLPYAKLPPPPP
Sbjct: 1   MGRFKILILSVVLFLTLITDSESQWQPPGVAPRPLCASQITLANYACATLPYAKLPPPPP 60

Query: 61  PSSSLSNNQDSQGSPVHGHHHGHHHRHHHKIPLTPIEENCCKWVQQVDSECVCELLSRLP 120
           PSSSLSNNQDSQGSPVHGHHHGHHHRHHHKIPLTPIEENCCKWVQQVDSECVCELLSRLP
Sbjct: 61  PSSSLSNNQDSQGSPVHGHHHGHHHRHHHKIPLTPIEENCCKWVQQVDSECVCELLSRLP 120

Query: 121 AFLKRPIHNFSVTIGGSCNATYWCGGMKI 150
           AFLKRPIHNFSVTIGGSCNATYWCGGMKI
Sbjct: 121 AFLKRPIHNFSVTIGGSCNATYWCGGMKI 149

[Close]

BLAST of CSPI07G16880 vs. TrEMBL
Match: A0A0B2QE80_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_033508 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.6e-33
Identity = 71/142 (50.00%), Postives = 91/142 (64.08%), Query Frame = 1


Query: 4   FKILILSVVLFLTLITDSESQWQPPGVAPRPLCASQITLANYACATLPYAKLPPPPPPSS 63
           F ++ L++ LFL ++   ESQ +P    PRPLCASQ  L NYAC+ LP++   PP  PS 
Sbjct: 4   FNLIALALTLFLAIVPKMESQIKPIPKTPRPLCASQFALVNYACSRLPFSPGVPPDSPSP 63

Query: 64  SLSNNQDSQGSPVHGHHHGHHHRHHHKIPLTPIEENCCKWVQQVDSECVCELLSRLPAFL 123
              NN     S  HGH HGH HRHH     TP E+NCC+W ++VD +CVCELL RLP FL
Sbjct: 64  DEENNNHHNRSHRHGHRHGHRHRHHQ----TPDEDNCCRWAKEVDHQCVCELLLRLPPFL 123

Query: 124 KRPIHNFSVTIGGSCNATYWCG 146
            RP H +++ +G SC+ TY CG
Sbjct: 124 IRPSHQYTLKVGASCDITYSCG 141

[Close]

BLAST of CSPI07G16880 vs. TrEMBL
Match: K7KF74_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.6e-33
Identity = 71/142 (50.00%), Postives = 91/142 (64.08%), Query Frame = 1


Query: 4   FKILILSVVLFLTLITDSESQWQPPGVAPRPLCASQITLANYACATLPYAKLPPPPPPSS 63
           F ++ L++ LFL ++   ESQ +P    PRPLCASQ  L NYAC+ LP++   PP  PS 
Sbjct: 4   FNLIALALTLFLAIVPKMESQIKPIPKTPRPLCASQFALVNYACSRLPFSPGVPPDSPSP 63

Query: 64  SLSNNQDSQGSPVHGHHHGHHHRHHHKIPLTPIEENCCKWVQQVDSECVCELLSRLPAFL 123
              NN     S  HGH HGH HRHH     TP E+NCC+W ++VD +CVCELL RLP FL
Sbjct: 64  DEENNNHHNRSHRHGHRHGHRHRHHQ----TPDEDNCCRWAKEVDHQCVCELLLRLPPFL 123

Query: 124 KRPIHNFSVTIGGSCNATYWCG 146
            RP H +++ +G SC+ TY CG
Sbjct: 124 IRPSHQYTLKVGASCDITYSCG 141

[Close]

BLAST of CSPI07G16880 vs. TrEMBL
Match: W9R706_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025041 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.4e-31
Identity = 69/139 (49.64%), Postives = 92/139 (66.19%), Query Frame = 1


Query: 13  LFLTLITDSESQWQPP--GVAPRPLCASQITLANYACATLPYAKLPPPPPPSSSLSNNQD 72
           LFL L+  SE     P  GV PRP+CASQ  LANYAC+ +PY+ LPPP P + SL  +  
Sbjct: 20  LFLLLVPKSEGILNGPASGVTPRPVCASQYALANYACSLIPYSPLPPPAPSTPSLDAHH- 79

Query: 73  SQGSPVHGHHHGHHHRHHHKIPLTPIEENCCKWVQQVDSECVCELLSRLPAFLKRPIHNF 132
            +G   HGH    HHRHHH+   T  E++CC+W+ ++D++CVCE+L  LP FL RP+H +
Sbjct: 80  HRGRRGHGH---GHHRHHHRHQGTQEEDDCCRWLYEIDTDCVCEMLVHLPDFLSRPVHEY 139

Query: 133 SVTIGGSCNATYWCGGMKI 150
           S+ +G +CN TY CGG  I
Sbjct: 140 SLIVGDTCNVTYSCGGRVI 154

[Close]

BLAST of CSPI07G16880 vs. TrEMBL
Match: A0A0S3RXX6_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G296500 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.9e-31
Identity = 70/144 (48.61%), Postives = 91/144 (63.19%), Query Frame = 1


Query: 7   LILSVVLFLTLITDSESQWQPPGV----APRPLCASQITLANYACATLPYAK-LPPPPPP 66
           LI   +L LTL+T +ESQ +PP +    APRPLC SQ  L NYAC+ LP+    PP   P
Sbjct: 7   LITVALLLLTLVTKTESQLKPPLIPVAKAPRPLCGSQFALVNYACSRLPFRHGAPPADSP 66

Query: 67  SSSLSNNQDSQGSPVHGHHHGHHHRHHHKIPLTPIEENCCKWVQQVDSECVCELLSRLPA 126
            S    + D +    H H H H H H H+   TP E+NCC+W ++VDS+CVCELL RLP 
Sbjct: 67  PSPDGEDGDGERHHSHSHRHNHRHGHGHRHHQTPEEDNCCRWAKEVDSQCVCELLLRLPP 126

Query: 127 FLKRPIHNFSVTIGGSCNATYWCG 146
           FL RP+H +++ +G +CN TY CG
Sbjct: 127 FLVRPVHQYTLNVGDACNITYSCG 150

[Close]

BLAST of CSPI07G16880 vs. TAIR10
Match: AT3G63095.1 (AT3G63095.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 92.0 bits (227), Expect = 3.3e-19
Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = 1


Query: 67  NNQDSQGSPVHGHHHGHHHRHHHKI-PLTPIEENCCKWVQQVDSECVCELLSRLPAFLKR 126
           NN D+        HH HHHRHHH+    T  ++ CCKW++Q+D+ECVC+LL RLP  L +
Sbjct: 166 NNDDNSHDQHRRRHHRHHHRHHHRHREETFAQQECCKWLKQMDNECVCDLLVRLPPLLAK 225

Query: 127 PIHNFSVTIGGSCNATYWCGGMKI 150
           PIHN++V +  SC  T+ CGG  I
Sbjct: 226 PIHNYTVFVDESCIVTFVCGGRLI 249

[Close]

BLAST of CSPI07G16880 vs. NCBI nr
Match: gi|700189638|gb|KGN44871.1| (hypothetical protein Csa_7G392440 [Cucumis sativus])

HSP 1 Score: 318.9 bits (816), Expect = 4.6e-84
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1


Query: 1   MGRFKILILSVVLFLTLITDSESQWQPPGVAPRPLCASQITLANYACATLPYAKLPPPPP 60
           MGRFKILILSVVLFLTLITDSESQWQPPGVAPRPLCASQITLANYACATLPYAKLPPPPP
Sbjct: 1   MGRFKILILSVVLFLTLITDSESQWQPPGVAPRPLCASQITLANYACATLPYAKLPPPPP 60

Query: 61  PSSSLSNNQDSQGSPVHGHHHGHHHRHHHKIPLTPIEENCCKWVQQVDSECVCELLSRLP 120
           PSSSLSNNQDSQGSPVHGHHHGHHHRHHHKIPLTPIEENCCKWVQQVDSECVCELLSRLP
Sbjct: 61  PSSSLSNNQDSQGSPVHGHHHGHHHRHHHKIPLTPIEENCCKWVQQVDSECVCELLSRLP 120

Query: 121 AFLKRPIHNFSVTIGGSCNATYWCGGMKI 150
           AFLKRPIHNFSVTIGGSCNATYWCGGMKI
Sbjct: 121 AFLKRPIHNFSVTIGGSCNATYWCGGMKI 149

[Close]

BLAST of CSPI07G16880 vs. NCBI nr
Match: gi|659101011|ref|XP_008451383.1| (PREDICTED: protein FAM76B [Cucumis melo])

HSP 1 Score: 278.1 bits (710), Expect = 9.1e-72
Identity = 133/151 (88.08%), Postives = 137/151 (90.73%), Query Frame = 1


Query: 1   MGRFKILILSVVLFLTLITDSESQWQPPGVAPRPLCASQITLANYACATLPYAKLPPPPP 60
           MGRFKILI SVV FL LITD+  QWQPP VAPRPLCASQI LANYACATLPY+KL PPPP
Sbjct: 1   MGRFKILIFSVVFFLALITDTGGQWQPPAVAPRPLCASQIALANYACATLPYSKLLPPPP 60

Query: 61  PSSSLSNNQDSQGSPVHGHHHGHHHRHHHKIPLTPIEENCCKWVQQVDSECVCELLSRLP 120
           PSSSLS+N DSQGSPVH HHHGHHHRHHHKIPL+PIEENCCKWVQQVDSECVCELLSRLP
Sbjct: 61  PSSSLSSNHDSQGSPVHTHHHGHHHRHHHKIPLSPIEENCCKWVQQVDSECVCELLSRLP 120

Query: 121 AFLKRPIHNFSVTIGG--SCNATYWCGGMKI 150
           AFLKRPIHNFSV IGG  SCNATY CGGMKI
Sbjct: 121 AFLKRPIHNFSVIIGGSLSCNATYSCGGMKI 151

[Close]

BLAST of CSPI07G16880 vs. NCBI nr
Match: gi|571445728|ref|XP_006576887.1| (PREDICTED: uncharacterized protein LOC102666530 [Glycine max])

HSP 1 Score: 149.8 bits (377), Expect = 3.7e-33
Identity = 71/142 (50.00%), Postives = 91/142 (64.08%), Query Frame = 1


Query: 4   FKILILSVVLFLTLITDSESQWQPPGVAPRPLCASQITLANYACATLPYAKLPPPPPPSS 63
           F ++ L++ LFL ++   ESQ +P    PRPLCASQ  L NYAC+ LP++   PP  PS 
Sbjct: 4   FNLIALALTLFLAIVPKMESQIKPIPKTPRPLCASQFALVNYACSRLPFSPGVPPDSPSP 63

Query: 64  SLSNNQDSQGSPVHGHHHGHHHRHHHKIPLTPIEENCCKWVQQVDSECVCELLSRLPAFL 123
              NN     S  HGH HGH HRHH     TP E+NCC+W ++VD +CVCELL RLP FL
Sbjct: 64  DEENNNHHNRSHRHGHRHGHRHRHHQ----TPDEDNCCRWAKEVDHQCVCELLLRLPPFL 123

Query: 124 KRPIHNFSVTIGGSCNATYWCG 146
            RP H +++ +G SC+ TY CG
Sbjct: 124 IRPSHQYTLKVGASCDITYSCG 141

[Close]

BLAST of CSPI07G16880 vs. NCBI nr
Match: gi|950948455|ref|XP_014494947.1| (PREDICTED: uncharacterized protein LOC106756858 [Vigna radiata var. radiata])

HSP 1 Score: 147.5 bits (371), Expect = 1.8e-32
Identity = 73/150 (48.67%), Postives = 94/150 (62.67%), Query Frame = 1


Query: 6   ILILSVVLFLTLITDSESQWQPPGVA----PRPLCASQITLANYACATLPY------AKL 65
           ++ L ++L LTL+T +ESQ +PP +     PRPLC SQ  L NYAC+ LP+      A  
Sbjct: 7   LITLPLLLLLTLVTKTESQIKPPLITVAKPPRPLCGSQFALVNYACSRLPFRHGAPPADS 66

Query: 66  PPPPPPSSSLSNNQDSQGSPVHGHHHGHHHRHHHKIPLTPIEENCCKWVQQVDSECVCEL 125
           PPPP           S     H H HGH HRHHH+   TP E+NCC+W ++VDS+CVCEL
Sbjct: 67  PPPPDGEDGDGETHHSHSHHRHNHRHGHGHRHHHQ---TPEEDNCCRWAKEVDSQCVCEL 126

Query: 126 LSRLPAFLKRPIHNFSVTIGGSCNATYWCG 146
           L RLP FL RP+H +++ IG +CN TY CG
Sbjct: 127 LLRLPPFLVRPVHQYTLNIGDACNITYSCG 153

[Close]

BLAST of CSPI07G16880 vs. NCBI nr
Match: gi|703076604|ref|XP_010090376.1| (hypothetical protein L484_025041 [Morus notabilis])

HSP 1 Score: 144.1 bits (362), Expect = 2.0e-31
Identity = 69/139 (49.64%), Postives = 92/139 (66.19%), Query Frame = 1


Query: 13  LFLTLITDSESQWQPP--GVAPRPLCASQITLANYACATLPYAKLPPPPPPSSSLSNNQD 72
           LFL L+  SE     P  GV PRP+CASQ  LANYAC+ +PY+ LPPP P + SL  +  
Sbjct: 20  LFLLLVPKSEGILNGPASGVTPRPVCASQYALANYACSLIPYSPLPPPAPSTPSLDAHH- 79

Query: 73  SQGSPVHGHHHGHHHRHHHKIPLTPIEENCCKWVQQVDSECVCELLSRLPAFLKRPIHNF 132
            +G   HGH    HHRHHH+   T  E++CC+W+ ++D++CVCE+L  LP FL RP+H +
Sbjct: 80  HRGRRGHGH---GHHRHHHRHQGTQEEDDCCRWLYEIDTDCVCEMLVHLPDFLSRPVHEY 139

Query: 133 SVTIGGSCNATYWCGGMKI 150
           S+ +G +CN TY CGG  I
Sbjct: 140 SLIVGDTCNVTYSCGGRVI 154

The following BLAST results are available for this feature:

BLAST of CSPI07G16880 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI07G16880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAN7_CUCSA	3.2e-84	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G392440 PE=4 SV=1	[more]
A0A0B2QE80_GLYSO	2.6e-33	50.00	Uncharacterized protein OS=Glycine soja GN=glysoja_033508 PE=4 SV=1	[more]
K7KF74_SOYBN	2.6e-33	50.00	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
W9R706_9ROSA	1.4e-31	49.64	Uncharacterized protein OS=Morus notabilis GN=L484_025041 PE=4 SV=1	[more]
A0A0S3RXX6_PHAAN	1.9e-31	48.61	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G296500 PE=...	[more]

BLAST of CSPI07G16880 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G63095.1	3.3e-19	48.81	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of CSPI07G16880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189638\|gb\|KGN44871.1\|	4.6e-84	100.00	hypothetical protein Csa_7G392440 [Cucumis sativus]	[more]
gi\|659101011\|ref\|XP_008451383.1\|	9.1e-72	88.08	PREDICTED: protein FAM76B [Cucumis melo]	[more]
gi\|571445728\|ref\|XP_006576887.1\|	3.7e-33	50.00	PREDICTED: uncharacterized protein LOC102666530 [Glycine max]	[more]
gi\|950948455\|ref\|XP_014494947.1\|	1.8e-32	48.67	PREDICTED: uncharacterized protein LOC106756858 [Vigna radiata var. radiata]	[more]
gi\|703076604\|ref\|XP_010090376.1\|	2.0e-31	49.64	hypothetical protein L484_025041 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G16880.1	CSPI07G16880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34377	FAMILY NOT NAMED	coord: 1..149 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI07G16880	Cla014748	Watermelon (97103) v1	cpiwmB572
CSPI07G16880	Csa7G392440	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G16880	MELO3C015854	Melon (DHL92) v3.5.1	cpimeB543
CSPI07G16880	Lsi02G023060	Bottle gourd (USVL1VR-Ls)	cpilsiB523
CSPI07G16880	MELO3C015854.2	Melon (DHL92) v3.6.1	cpimedB528
CSPI07G16880	CsaV3_7G028640	Cucumber (Chinese Long) v3	cpicucB414
CSPI07G16880	Cla97C09G169500	Watermelon (97103) v2	cpiwmbB586
CSPI07G16880	CmaCh17G011640	Cucurbita maxima (Rimu)	cmacpiB389
CSPI07G16880	CmoCh17G011390	Cucurbita moschata (Rifu)	cmocpiB378
CSPI07G16880	Cp4.1LG12g11820	Cucurbita pepo (Zucchini)	cpecpiB160
CSPI07G16880	CsGy7G015340	Cucumber (Gy14) v2	cgybcpiB331
CSPI07G16880	Carg07236	Silver-seed gourd	carcpiB0122

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G16880	Bottle gourd (USVL1VR-Ls)	cpilsiB517
CSPI07G16880	Melon (DHL92) v3.6.1	cpimedB519
CSPI07G16880	Silver-seed gourd	carcpiB0895
CSPI07G16880	Wax gourd	cpiwgoB704
CSPI07G16880	Cucurbita maxima (Rimu)	cmacpiB934
CSPI07G16880	Cucurbita maxima (Rimu)	cmacpiB392
CSPI07G16880	Cucurbita maxima (Rimu)	cmacpiB940
CSPI07G16880	Cucurbita moschata (Rifu)	cmocpiB381
CSPI07G16880	Cucurbita moschata (Rifu)	cmocpiB913
CSPI07G16880	Cucurbita moschata (Rifu)	cmocpiB920
CSPI07G16880	Melon (DHL92) v3.5.1	cpimeB526
CSPI07G16880	Watermelon (Charleston Gray)	cpiwcgB544
CSPI07G16880	Cucurbita pepo (Zucchini)	cpecpiB163
CSPI07G16880	Cucurbita pepo (Zucchini)	cpecpiB340