Cp4.1LG12g10270 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g10270
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTetratricopeptide repeat-like superfamily protein, putative isoform 2
LocationCp4.1LG12 : 9607174 .. 9607947 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGCTCAGAAGCTCTTCTACGCCGCTTCTTCGCTCTCTTCTCCCGCCGGACCACCTCCATCACCACCATGATGCCGTCGGGAAACACTCCCCTTCCCCCTCCCATTCCCCCTTCGCCTTTCGCTGTAACAATAAACCCCTTTCTTTCTCCGACCACCATCGCGCTGCTCCCACTGGCTTTCGGAGAACCCACTCCGAAGGAAATTTGATTACCCTTTCTCATGCTTCTGATGTAATCGATGTCCATGAAGACCCCTTTTCATTTGATTCATTCAGTTTCAAACCCTCCAATAAACTCAGTCACAGGCCTAACCGCTCCATTCTCGAGACCATACCTTCGTTTTCCTTCTACGGTTCCAGAGCCAGGACGGAAGAAGAAGATGACGAAGACGATGATCAACATGCTGATCCGGAGGAAGATGAAGTTGCCTTGGGGAATTTTGGCATCCATAACAGGATGGTCTCTGCCATTGTAACTCCGGAGGTTAGAGCCATGGAACAAGCTTGGACCAGAATGAATTCAGGAGATGGGATTGGGTTTGTGGGTGATTTACAGAAAGAGATGCATCTGGCGAGAGGGCCAGGTGGTGCCGGTGGTGGTGGTGGTCGACGGCGGAGTGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGGGGTGAGCAGCATGGCATGGAGGAGTATTACAAGAAAATGGTAGTGGAAAATCCAGGGAATGCTCTGGTTTTGAGTAACTATGCGGAGTTCTTGTACCAGGCAAGATCTAAGCTTGTTTAA

mRNA sequence

ATGCTGCTCAGAAGCTCTTCTACGCCGCTTCTTCGCTCTCTTCTCCCGCCGGACCACCTCCATCACCACCATGATGCCGTCGGGAAACACTCCCCTTCCCCCTCCCATTCCCCCTTCGCCTTTCGCTGTAACAATAAACCCCTTTCTTTCTCCGACCACCATCGCGCTGCTCCCACTGGCTTTCGGAGAACCCACTCCGAAGGAAATTTGATTACCCTTTCTCATGCTTCTGATGTAATCGATGTCCATGAAGACCCCTTTTCATTTGATTCATTCAGTTTCAAACCCTCCAATAAACTCAGTCACAGGCCTAACCGCTCCATTCTCGAGACCATACCTTCGTTTTCCTTCTACGGTTCCAGAGCCAGGACGGAAGAAGAAGATGACGAAGACGATGATCAACATGCTGATCCGGAGGAAGATGAAGTTGCCTTGGGGAATTTTGGCATCCATAACAGGATGGTCTCTGCCATTGTAACTCCGGAGGTTAGAGCCATGGAACAAGCTTGGACCAGAATGAATTCAGGAGATGGGATTGGGTTTGTGGGTGATTTACAGAAAGAGATGCATCTGGCGAGAGGGCCAGGTGGTGCCGGTGGTGGTGGTGGTCGACGGCGGAGTGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGGGGTGAGCAGCATGGCATGGAGGAGTATTACAAGAAAATGGTAGTGGAAAATCCAGGGAATGCTCTGGTTTTGAGTAACTATGCGGAGTTCTTGTACCAGGCAAGATCTAAGCTTGTTTAA

Coding sequence (CDS)

ATGCTGCTCAGAAGCTCTTCTACGCCGCTTCTTCGCTCTCTTCTCCCGCCGGACCACCTCCATCACCACCATGATGCCGTCGGGAAACACTCCCCTTCCCCCTCCCATTCCCCCTTCGCCTTTCGCTGTAACAATAAACCCCTTTCTTTCTCCGACCACCATCGCGCTGCTCCCACTGGCTTTCGGAGAACCCACTCCGAAGGAAATTTGATTACCCTTTCTCATGCTTCTGATGTAATCGATGTCCATGAAGACCCCTTTTCATTTGATTCATTCAGTTTCAAACCCTCCAATAAACTCAGTCACAGGCCTAACCGCTCCATTCTCGAGACCATACCTTCGTTTTCCTTCTACGGTTCCAGAGCCAGGACGGAAGAAGAAGATGACGAAGACGATGATCAACATGCTGATCCGGAGGAAGATGAAGTTGCCTTGGGGAATTTTGGCATCCATAACAGGATGGTCTCTGCCATTGTAACTCCGGAGGTTAGAGCCATGGAACAAGCTTGGACCAGAATGAATTCAGGAGATGGGATTGGGTTTGTGGGTGATTTACAGAAAGAGATGCATCTGGCGAGAGGGCCAGGTGGTGCCGGTGGTGGTGGTGGTCGACGGCGGAGTGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGGGGTGAGCAGCATGGCATGGAGGAGTATTACAAGAAAATGGTAGTGGAAAATCCAGGGAATGCTCTGGTTTTGAGTAACTATGCGGAGTTCTTGTACCAGGCAAGATCTAAGCTTGTTTAA

Protein sequence

MLLRSSSTPLLRSLLPPDHLHHHHDAVGKHSPSPSHSPFAFRCNNKPLSFSDHHRAAPTGFRRTHSEGNLITLSHASDVIDVHEDPFSFDSFSFKPSNKLSHRPNRSILETIPSFSFYGSRARTEEEDDEDDDQHADPEEDEVALGNFGIHNRMVSAIVTPEVRAMEQAWTRMNSGDGIGFVGDLQKEMHLARGPGGAGGGGGRRRSGGGGGGGGGGGGEQHGMEEYYKKMVVENPGNALVLSNYAEFLYQARSKLV
Homology
[Close]
BLAST of Cp4.1LG12g10270 vs. TrEMBL
Match: A0A0A0KA70_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G088010 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 1.8e-82
Identity = 188/276 (68.12%), Postives = 211/276 (76.45%), Query Frame = 1 

Query: 1   MLLRSSSTPLLRSLLPPDHLHHHHDAVGKHSPSPSHSPFAFRCNNKPLSFS--------- 60
           MLL+SSSTPLL SLLPPDH  HHHD  GKHSPS     F F CNNKPLSFS         
Sbjct: 1   MLLKSSSTPLLGSLLPPDH--HHHDLHGKHSPST----FPFHCNNKPLSFSTTTASLSSS 60

Query: 61  ----DHHRAA-PTGFRRTHSEGNLITLSHASDVIDVHEDPFSFDSFSFKPSNKLSHRPNR 120
               DHHRAA P+GFRRT+SEGNL T+SHASDVIDVHEDPFSFDS +FK S K  H   R
Sbjct: 61  PAFSDHHRAAAPSGFRRTNSEGNLNTVSHASDVIDVHEDPFSFDSVNFKSSKKFCHGLKR 120

Query: 121 SILETIPSFSFYGSRARTEEEDDEDDDQHADPEEDEVALGNFGIHNRMVSAIVTPEVRAM 180
           SIL+TIPSFSFYGSRARTEEE +E++D+  D +E+E  LGNF I     +AIVTPEVRAM
Sbjct: 121 SILQTIPSFSFYGSRARTEEE-EEEEDREIDGKEEEDGLGNFSID----AAIVTPEVRAM 180

Query: 181 EQAWTRMNS-GDGIGFVGDLQKEMHLARGPG-----GAGGGGGRRRSGGGGGGGGGGGGE 240
           EQAW+R+ + GDG+GFVGDL+KEM+LARG G     G GGGGGR +    GGGGGGGGGE
Sbjct: 181 EQAWSRVGAGGDGMGFVGDLRKEMYLARGLGIGGGPGDGGGGGRLQ----GGGGGGGGGE 240

Query: 241 QHGMEEYYKKMVVENPGNALVLSNYAEFLYQARSKL 257
           ++GMEEYYKKMVVENP NALVLSNYAEFLYQ +  L
Sbjct: 241 EYGMEEYYKKMVVENPSNALVLSNYAEFLYQRKGDL 261

[Close]
BLAST of Cp4.1LG12g10270 vs. TrEMBL
Match: B9GRD4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s25870g PE=4 SV=2)

HSP 1 Score: 146.7 bits (369), Expect = 3.8e-32
Identity = 122/300 (40.67%), Postives = 158/300 (52.67%), Query Frame = 1 

Query: 1   MLLRSSSTPLLRSLLPP-------DHLHHHHDA--VGKHSPS--------PSHSPFAF-- 60
           MLLRSSSTP+L SLL            +HHHD     KHSP         P H    F  
Sbjct: 6   MLLRSSSTPVLGSLLSSFSDSPNNSSSNHHHDINPTFKHSPIHHQSINKLPYHQTGCFCL 65

Query: 61  ---RCNNKPLS--FSDHHRAAPTGFRRTHSEGNLITLSHASDVIDVHEDPFSFDSFSFKP 120
               CN+ P+S   S+    +  GFRR  SEGNL        ++D   +      ++   
Sbjct: 66  STISCNSSPISPSISEFSGRSHQGFRRAQSEGNL------QGLLDYSSNNNDAQHYNPNQ 125

Query: 121 SNKLSHRPNRSILETIPSFSFYGSRARTEEEDDEDDDQHADPEEDEVAL---------GN 180
           + K+S R    +LETIPSFS+   R R E+ED+ED+DQ    +E+E A          G+
Sbjct: 126 TRKVSGRSKCLMLETIPSFSYSTLRGRYEDEDEEDEDQSDVQDEEERAELEENVAAENGH 185

Query: 181 FGIHNRMVSAIVTPEVRAMEQAWTRMNSGDGIGFVGD---LQKEMHLARGPG---GAGGG 240
           FG+ N+M + ++T EVR M++ W+       + F G    + +EMHLARGPG   G+ G 
Sbjct: 186 FGLSNKMENMVLTEEVRVMDRIWS-------VNFEGKREWISEEMHLARGPGIDYGSNGN 245

Query: 241 GGRRRSGGGGGGGGG-----GGGEQHGMEEYYKKMVVENPGNALVLSNYAEFLYQARSKL 257
           GG    GG  GGG G     GGG+ HG EEYYKKMV ENPGN L L NYA+FLYQ +  L
Sbjct: 246 GGGGGYGGRSGGGSGDEFDSGGGDMHGTEEYYKKMVQENPGNPLFLRNYAQFLYQTKRDL 292

[Close]
BLAST of Cp4.1LG12g10270 vs. TrEMBL
Match: A0A061DND8_THECC (Tetratricopeptide repeat-like superfamily protein, putative isoform 3 OS=Theobroma cacao GN=TCM_003908 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.4e-26
Identity = 121/307 (39.41%), Postives = 156/307 (50.81%), Query Frame = 1 

Query: 1   MLLRSSSTPLLRSLL----------------------PPDHLHHHHDAVGKH-SPSPSHS 60
           MLLRSSSTPLL SLL                      P    HH+H+ +  H SP   H 
Sbjct: 31  MLLRSSSTPLLGSLLSSITDSPSNNNHYETSTPIRHYPSTSFHHNHNRISFHPSPGSLHL 90

Query: 61  PFAFRCNNKPLS------FSDHHRAAPTGFRRTHSEGNLITLSHASDVIDVHEDPFSFDS 120
                C + P+S      FSD  R    GFRR  SEGNL  L HA+   D +E     D 
Sbjct: 91  STTVSCGSSPISPSVVHQFSDFDRQ---GFRRAQSEGNLEGLVHAA--CDTNE-----DF 150

Query: 121 FSFKPSNKLSHRPNRSILETIPSFSFYGSRARTEEEDDEDD--DQHADPEEDEVAL---- 180
           ++     KLS R  R +L+TIPSFSFY S AR EEE+DE D  ++  + +E+E  L    
Sbjct: 151 YNHNQPKKLSARHQRLMLQTIPSFSFYNSNARCEEEEDESDLEEEEEELKENEELLDSGE 210

Query: 181 -------GNFGIHN-RMVSAIVTPEVRAMEQAWTRMNSGDGIGFVGDLQKEMHLARG--- 240
                  GN   +  RM + ++  EV+   ++W      +G G VG+   +M LARG   
Sbjct: 211 ERVTAMNGNLEFNAFRMENILLNEEVKG--KSWNVGFEDEG-GLVGE---KMFLARGLST 270

Query: 241 PGGAGGGGGRRRSGGGGG-----GGGGGGGEQHGMEEYYKKMVVENPGNALVLSNYAEFL 257
            GG+ GG      GGGGG     G GG G   HG+EE+Y++MV ENPGN L L NYA+FL
Sbjct: 271 DGGSAGGVSGGSGGGGGGEFNPAGSGGDGANNHGVEEHYRRMVEENPGNPLFLGNYAQFL 321

[Close]
BLAST of Cp4.1LG12g10270 vs. TrEMBL
Match: A0A061DWD9_THECC (Tetratricopeptide repeat-like superfamily protein, putative isoform 2 OS=Theobroma cacao GN=TCM_003908 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.4e-26
Identity = 121/307 (39.41%), Postives = 156/307 (50.81%), Query Frame = 1 

Query: 1   MLLRSSSTPLLRSLL----------------------PPDHLHHHHDAVGKH-SPSPSHS 60
           MLLRSSSTPLL SLL                      P    HH+H+ +  H SP   H 
Sbjct: 1   MLLRSSSTPLLGSLLSSITDSPSNNNHYETSTPIRHYPSTSFHHNHNRISFHPSPGSLHL 60

Query: 61  PFAFRCNNKPLS------FSDHHRAAPTGFRRTHSEGNLITLSHASDVIDVHEDPFSFDS 120
                C + P+S      FSD  R    GFRR  SEGNL  L HA+   D +E     D 
Sbjct: 61  STTVSCGSSPISPSVVHQFSDFDRQ---GFRRAQSEGNLEGLVHAA--CDTNE-----DF 120

Query: 121 FSFKPSNKLSHRPNRSILETIPSFSFYGSRARTEEEDDEDD--DQHADPEEDEVAL---- 180
           ++     KLS R  R +L+TIPSFSFY S AR EEE+DE D  ++  + +E+E  L    
Sbjct: 121 YNHNQPKKLSARHQRLMLQTIPSFSFYNSNARCEEEEDESDLEEEEEELKENEELLDSGE 180

Query: 181 -------GNFGIHN-RMVSAIVTPEVRAMEQAWTRMNSGDGIGFVGDLQKEMHLARG--- 240
                  GN   +  RM + ++  EV+   ++W      +G G VG+   +M LARG   
Sbjct: 181 ERVTAMNGNLEFNAFRMENILLNEEVKG--KSWNVGFEDEG-GLVGE---KMFLARGLST 240

Query: 241 PGGAGGGGGRRRSGGGGG-----GGGGGGGEQHGMEEYYKKMVVENPGNALVLSNYAEFL 257
            GG+ GG      GGGGG     G GG G   HG+EE+Y++MV ENPGN L L NYA+FL
Sbjct: 241 DGGSAGGVSGGSGGGGGGEFNPAGSGGDGANNHGVEEHYRRMVEENPGNPLFLGNYAQFL 291

[Close]
BLAST of Cp4.1LG12g10270 vs. TrEMBL
Match: A0A061DPH6_THECC (Tetratricopeptide repeat-like superfamily protein, putative isoform 1 OS=Theobroma cacao GN=TCM_003908 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.4e-26
Identity = 121/307 (39.41%), Postives = 156/307 (50.81%), Query Frame = 1 

Query: 1   MLLRSSSTPLLRSLL----------------------PPDHLHHHHDAVGKH-SPSPSHS 60
           MLLRSSSTPLL SLL                      P    HH+H+ +  H SP   H 
Sbjct: 31  MLLRSSSTPLLGSLLSSITDSPSNNNHYETSTPIRHYPSTSFHHNHNRISFHPSPGSLHL 90

Query: 61  PFAFRCNNKPLS------FSDHHRAAPTGFRRTHSEGNLITLSHASDVIDVHEDPFSFDS 120
                C + P+S      FSD  R    GFRR  SEGNL  L HA+   D +E     D 
Sbjct: 91  STTVSCGSSPISPSVVHQFSDFDRQ---GFRRAQSEGNLEGLVHAA--CDTNE-----DF 150

Query: 121 FSFKPSNKLSHRPNRSILETIPSFSFYGSRARTEEEDDEDD--DQHADPEEDEVAL---- 180
           ++     KLS R  R +L+TIPSFSFY S AR EEE+DE D  ++  + +E+E  L    
Sbjct: 151 YNHNQPKKLSARHQRLMLQTIPSFSFYNSNARCEEEEDESDLEEEEEELKENEELLDSGE 210

Query: 181 -------GNFGIHN-RMVSAIVTPEVRAMEQAWTRMNSGDGIGFVGDLQKEMHLARG--- 240
                  GN   +  RM + ++  EV+   ++W      +G G VG+   +M LARG   
Sbjct: 211 ERVTAMNGNLEFNAFRMENILLNEEVKG--KSWNVGFEDEG-GLVGE---KMFLARGLST 270

Query: 241 PGGAGGGGGRRRSGGGGG-----GGGGGGGEQHGMEEYYKKMVVENPGNALVLSNYAEFL 257
            GG+ GG      GGGGG     G GG G   HG+EE+Y++MV ENPGN L L NYA+FL
Sbjct: 271 DGGSAGGVSGGSGGGGGGEFNPAGSGGDGANNHGVEEHYRRMVEENPGNPLFLGNYAQFL 321

[Close]
BLAST of Cp4.1LG12g10270 vs. NCBI nr
Match: gi|659120013|ref|XP_008459965.1| (PREDICTED: uncharacterized protein LOC103498923 [Cucumis melo])

HSP 1 Score: 323.2 bits (827), Expect = 4.2e-85
Identity = 185/276 (67.03%), Postives = 215/276 (77.90%), Query Frame = 1 

Query: 1   MLLRSSSTPLLRSLLPPDHLHHHHDAVGKHSPSPSHSPFAFRCNNKPLSFS--------- 60
           MLL+SSSTPLL SLLPPDH HHH+D VGKHSPS     F F CNNKPLSFS         
Sbjct: 1   MLLKSSSTPLLGSLLPPDHHHHHNDLVGKHSPST----FPFHCNNKPLSFSTTTASLNSS 60

Query: 61  ----DHHRA-APTGFRRTHSEGNLITLSHASDVIDVHEDPFSFDSFSFKPSNKLSHRPNR 120
               DHHRA AP+GFRRT+SEGNL T+SHAS+VIDVHEDPFS DS +FK SNK S    R
Sbjct: 61  PSFSDHHRAPAPSGFRRTNSEGNLNTISHASNVIDVHEDPFSSDSVNFKSSNKFSRGLKR 120

Query: 121 SILETIPSFSFYGSRARTEEEDDEDDDQHADPEEDEVALGNFGIHNRMVSAIVTPEVRAM 180
           S+L+TIPSFSFYGSR RTEE+++E++D+  D EE+E  LGNFGI+    +A++TPEVRAM
Sbjct: 121 SVLQTIPSFSFYGSRVRTEEDEEEEEDREIDTEEEEDDLGNFGIN----AAVITPEVRAM 180

Query: 181 EQAWTRMNS-GDGIGFVGDLQKEMHLARGPG-----GAGGGGGRRRSGGGGGGGGGGGGE 240
           EQAW+R+ + GDGIGFVGDL+KEM+LARG G     G GGGGGR  +    GGGGGGGGE
Sbjct: 181 EQAWSRVGAGGDGIGFVGDLRKEMYLARGLGIGGGPGDGGGGGRLHT----GGGGGGGGE 240

Query: 241 QHGMEEYYKKMVVENPGNALVLSNYAEFLYQARSKL 257
           ++GMEEYYKKMVVENPGNALVLSNYAEFLY+ +  L
Sbjct: 241 EYGMEEYYKKMVVENPGNALVLSNYAEFLYKRKGDL 264

[Close]
BLAST of Cp4.1LG12g10270 vs. NCBI nr
Match: gi|778711625|ref|XP_004140576.2| (PREDICTED: uncharacterized protein LOC101206684 [Cucumis sativus])

HSP 1 Score: 313.9 bits (803), Expect = 2.6e-82
Identity = 188/276 (68.12%), Postives = 211/276 (76.45%), Query Frame = 1 

Query: 1   MLLRSSSTPLLRSLLPPDHLHHHHDAVGKHSPSPSHSPFAFRCNNKPLSFS--------- 60
           MLL+SSSTPLL SLLPPDH  HHHD  GKHSPS     F F CNNKPLSFS         
Sbjct: 1   MLLKSSSTPLLGSLLPPDH--HHHDLHGKHSPST----FPFHCNNKPLSFSTTTASLSSS 60

Query: 61  ----DHHRAA-PTGFRRTHSEGNLITLSHASDVIDVHEDPFSFDSFSFKPSNKLSHRPNR 120
               DHHRAA P+GFRRT+SEGNL T+SHASDVIDVHEDPFSFDS +FK S K  H   R
Sbjct: 61  PAFSDHHRAAAPSGFRRTNSEGNLNTVSHASDVIDVHEDPFSFDSVNFKSSKKFCHGLKR 120

Query: 121 SILETIPSFSFYGSRARTEEEDDEDDDQHADPEEDEVALGNFGIHNRMVSAIVTPEVRAM 180
           SIL+TIPSFSFYGSRARTEEE +E++D+  D +E+E  LGNF I     +AIVTPEVRAM
Sbjct: 121 SILQTIPSFSFYGSRARTEEE-EEEEDREIDGKEEEDGLGNFSID----AAIVTPEVRAM 180

Query: 181 EQAWTRMNS-GDGIGFVGDLQKEMHLARGPG-----GAGGGGGRRRSGGGGGGGGGGGGE 240
           EQAW+R+ + GDG+GFVGDL+KEM+LARG G     G GGGGGR +    GGGGGGGGGE
Sbjct: 181 EQAWSRVGAGGDGMGFVGDLRKEMYLARGLGIGGGPGDGGGGGRLQ----GGGGGGGGGE 240

Query: 241 QHGMEEYYKKMVVENPGNALVLSNYAEFLYQARSKL 257
           ++GMEEYYKKMVVENP NALVLSNYAEFLYQ +  L
Sbjct: 241 EYGMEEYYKKMVVENPSNALVLSNYAEFLYQRKGDL 261

[Close]
BLAST of Cp4.1LG12g10270 vs. NCBI nr
Match: gi|700191169|gb|KGN46373.1| (hypothetical protein Csa_6G088010 [Cucumis sativus])

HSP 1 Score: 313.9 bits (803), Expect = 2.6e-82
Identity = 188/276 (68.12%), Postives = 211/276 (76.45%), Query Frame = 1 

Query: 1   MLLRSSSTPLLRSLLPPDHLHHHHDAVGKHSPSPSHSPFAFRCNNKPLSFS--------- 60
           MLL+SSSTPLL SLLPPDH  HHHD  GKHSPS     F F CNNKPLSFS         
Sbjct: 1   MLLKSSSTPLLGSLLPPDH--HHHDLHGKHSPST----FPFHCNNKPLSFSTTTASLSSS 60

Query: 61  ----DHHRAA-PTGFRRTHSEGNLITLSHASDVIDVHEDPFSFDSFSFKPSNKLSHRPNR 120
               DHHRAA P+GFRRT+SEGNL T+SHASDVIDVHEDPFSFDS +FK S K  H   R
Sbjct: 61  PAFSDHHRAAAPSGFRRTNSEGNLNTVSHASDVIDVHEDPFSFDSVNFKSSKKFCHGLKR 120

Query: 121 SILETIPSFSFYGSRARTEEEDDEDDDQHADPEEDEVALGNFGIHNRMVSAIVTPEVRAM 180
           SIL+TIPSFSFYGSRARTEEE +E++D+  D +E+E  LGNF I     +AIVTPEVRAM
Sbjct: 121 SILQTIPSFSFYGSRARTEEE-EEEEDREIDGKEEEDGLGNFSID----AAIVTPEVRAM 180

Query: 181 EQAWTRMNS-GDGIGFVGDLQKEMHLARGPG-----GAGGGGGRRRSGGGGGGGGGGGGE 240
           EQAW+R+ + GDG+GFVGDL+KEM+LARG G     G GGGGGR +    GGGGGGGGGE
Sbjct: 181 EQAWSRVGAGGDGMGFVGDLRKEMYLARGLGIGGGPGDGGGGGRLQ----GGGGGGGGGE 240

Query: 241 QHGMEEYYKKMVVENPGNALVLSNYAEFLYQARSKL 257
           ++GMEEYYKKMVVENP NALVLSNYAEFLYQ +  L
Sbjct: 241 EYGMEEYYKKMVVENPSNALVLSNYAEFLYQRKGDL 261

[Close]
BLAST of Cp4.1LG12g10270 vs. NCBI nr
Match: gi|566159995|ref|XP_002301849.2| (hypothetical protein POPTR_0002s25870g [Populus trichocarpa])

HSP 1 Score: 146.7 bits (369), Expect = 5.4e-32
Identity = 122/300 (40.67%), Postives = 158/300 (52.67%), Query Frame = 1 

Query: 1   MLLRSSSTPLLRSLLPP-------DHLHHHHDA--VGKHSPS--------PSHSPFAF-- 60
           MLLRSSSTP+L SLL            +HHHD     KHSP         P H    F  
Sbjct: 6   MLLRSSSTPVLGSLLSSFSDSPNNSSSNHHHDINPTFKHSPIHHQSINKLPYHQTGCFCL 65

Query: 61  ---RCNNKPLS--FSDHHRAAPTGFRRTHSEGNLITLSHASDVIDVHEDPFSFDSFSFKP 120
               CN+ P+S   S+    +  GFRR  SEGNL        ++D   +      ++   
Sbjct: 66  STISCNSSPISPSISEFSGRSHQGFRRAQSEGNL------QGLLDYSSNNNDAQHYNPNQ 125

Query: 121 SNKLSHRPNRSILETIPSFSFYGSRARTEEEDDEDDDQHADPEEDEVAL---------GN 180
           + K+S R    +LETIPSFS+   R R E+ED+ED+DQ    +E+E A          G+
Sbjct: 126 TRKVSGRSKCLMLETIPSFSYSTLRGRYEDEDEEDEDQSDVQDEEERAELEENVAAENGH 185

Query: 181 FGIHNRMVSAIVTPEVRAMEQAWTRMNSGDGIGFVGD---LQKEMHLARGPG---GAGGG 240
           FG+ N+M + ++T EVR M++ W+       + F G    + +EMHLARGPG   G+ G 
Sbjct: 186 FGLSNKMENMVLTEEVRVMDRIWS-------VNFEGKREWISEEMHLARGPGIDYGSNGN 245

Query: 241 GGRRRSGGGGGGGGG-----GGGEQHGMEEYYKKMVVENPGNALVLSNYAEFLYQARSKL 257
           GG    GG  GGG G     GGG+ HG EEYYKKMV ENPGN L L NYA+FLYQ +  L
Sbjct: 246 GGGGGYGGRSGGGSGDEFDSGGGDMHGTEEYYKKMVQENPGNPLFLRNYAQFLYQTKRDL 292

[Close]
BLAST of Cp4.1LG12g10270 vs. NCBI nr
Match: gi|743833255|ref|XP_011024484.1| (PREDICTED: uncharacterized protein LOC105125639 [Populus euphratica])

HSP 1 Score: 142.1 bits (357), Expect = 1.3e-30
Identity = 120/297 (40.40%), Postives = 158/297 (53.20%), Query Frame = 1 

Query: 1   MLLRSSSTPLLRSLLPP-------DHLHHHHD--AVGKHSPS--------PSHSPFAF-- 60
           MLLRSSSTP+L SLL            +HHHD     KHSP         P H    F  
Sbjct: 6   MLLRSSSTPVLGSLLSSFSDSANNSSSNHHHDINTAFKHSPIHHQSINKLPYHQTGCFCL 65

Query: 61  ---RCNNKPLS--FSDHHRAAPTGFRRTHSEGNLITLSHASDVIDVHEDPFSFDSFSFKP 120
               CN+ P+S   S+    +  GFRR  SEGNL        ++D   +      ++   
Sbjct: 66  STISCNSSPISPSISEFSGRSHQGFRRAQSEGNL------QRILDYSSNNNDEQHYNPNQ 125

Query: 121 SNKLSHRPNRSILETIPSFSFYGSRARTEEEDDEDDDQHADPEEDEVAL---------GN 180
           + K+S R    +LETIPSFSF   R R E+ED+ED+DQ    +E+E A          G+
Sbjct: 126 TRKVSGRSKCLMLETIPSFSFSTLRGRYEDEDEEDEDQSDVQDEEERAELDENAAAENGH 185

Query: 181 FGIHNRMVSAIVTPEVRAMEQAWTRMNSGDGIGFVGDLQKEMHLARGPG---GAGGGGGR 240
           FG+ N+  + ++T EVR M++ W+ +N  +   ++ +   EMHLARGPG   G+ G GG 
Sbjct: 186 FGLSNKTENMVLTEEVRVMDRIWS-VNFEEKREWISE---EMHLARGPGIDCGSNGNGGG 245

Query: 241 RRSGGGGGGGGG-----GGGEQHGMEEYYKKMVVENPGNALVLSNYAEFLYQARSKL 257
              GG  GGG G     GGG+ HG EEYYK+MV ENPGN L L NYA+FLYQ +  L
Sbjct: 246 GGYGGRSGGGSGDEFDSGGGDMHGTEEYYKRMVQENPGNPLFLRNYAQFLYQTKRDL 292

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g10270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g10270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KA70_CUCSA1.8e-8268.12Uncharacterized protein OS=Cucumis sativus GN=Csa_6G088010 PE=4 SV=1[more]
B9GRD4_POPTR3.8e-3240.67Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s25870g PE=4 SV=2[more]
A0A061DND8_THECC1.4e-2639.41Tetratricopeptide repeat-like superfamily protein, putative isoform 3 OS=Theobro... [more]
A0A061DWD9_THECC1.4e-2639.41Tetratricopeptide repeat-like superfamily protein, putative isoform 2 OS=Theobro... [more]
A0A061DPH6_THECC1.4e-2639.41Tetratricopeptide repeat-like superfamily protein, putative isoform 1 OS=Theobro... [more]
BLAST of Cp4.1LG12g10270 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g10270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659120013|ref|XP_008459965.1|4.2e-8567.03PREDICTED: uncharacterized protein LOC103498923 [Cucumis melo][more]
gi|778711625|ref|XP_004140576.2|2.6e-8268.12PREDICTED: uncharacterized protein LOC101206684 [Cucumis sativus][more]
gi|700191169|gb|KGN46373.1|2.6e-8268.12hypothetical protein Csa_6G088010 [Cucumis sativus][more]
gi|566159995|ref|XP_002301849.2|5.4e-3240.67hypothetical protein POPTR_0002s25870g [Populus trichocarpa][more]
gi|743833255|ref|XP_011024484.1|1.3e-3040.40PREDICTED: uncharacterized protein LOC105125639 [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006397 mRNA processing
biological_process GO:0006396 RNA processing
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g10270.1Cp4.1LG12g10270.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR26312FAMILY NOT NAMEDcoord: 196..253
score: 1.7
NoneNo IPR availablePANTHERPTHR26312:SF89SUBFAMILY NOT NAMEDcoord: 196..253
score: 1.7