Cp4.1LG12g08290 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g08290
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPentatricopeptide repeat-containing protein family
LocationCp4.1LG12 : 6489562 .. 6490245 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTCTCTCTTCACTCCACGTTTCTCAAATCTCAAATCCCGATTCCGATTCCGATCTCCGCCACCGCTACCGTCGTCGTTTCCCTTCCGGTACGCTGCGGTCCTCGGGACAACCGAGGACCGCTAGTCAAAGGCAGAACCCTAAGCACCGAAGCAATCCAAGCCATTCAATCTCTAAAACGGGCCGAGAAATCCGACCCGACGAAGCTCGAACAAGTCCTCTCCACTACGCTCTCCCGATTGCTCAAAGCCGACCTCGTCGCCACCTTAAAGGAGCTTCTCCGGCAGGACCGGTGCGCCCTCGCTTTGGAGGTTTTCGCCGTCGTACGATCGGAGTACGGCGCCGATTTAGGGATGTACGCAGAGGTGGCAGCGGCGTTATCGAGGAACGGAGCGGCGGAGGAAATCGACCGGCTGGTTTGCGATTTGGAAGATGAAGATAGGGCGATCCAGTGCGATGATAAGGGTTTGATTAAGTTGATCAAGGCGGTGATTGGTGGGGATAGAAGGGAATCGACGGTGAGGATTTATAGGATGATGAAGAGGAGCGGTTGGGGATCCACCATCAAAGCCGATGATTATACGGTTAGGGTTTTGAGCAAGGGCTTAAGGAGGCTCGGGGAAATGGAGATGGCTGATGAGGTCAATATGCAATTTCAAGATTTAGTGGGCAGTTTTTGA

mRNA sequence

ATGGCTTTCTCTCTTCACTCCACGTTTCTCAAATCTCAAATCCCGATTCCGATTCCGATCTCCGCCACCGCTACCGTCGTCGTTTCCCTTCCGGTACGCTGCGGTCCTCGGGACAACCGAGGACCGCTAGTCAAAGGCAGAACCCTAAGCACCGAAGCAATCCAAGCCATTCAATCTCTAAAACGGGCCGAGAAATCCGACCCGACGAAGCTCGAACAAGTCCTCTCCACTACGCTCTCCCGATTGCTCAAAGCCGACCTCGTCGCCACCTTAAAGGAGCTTCTCCGGCAGGACCGGTGCGCCCTCGCTTTGGAGGTTTTCGCCGTCGTACGATCGGAGTACGGCGCCGATTTAGGGATGTACGCAGAGGTGGCAGCGGCGTTATCGAGGAACGGAGCGGCGGAGGAAATCGACCGGCTGGTTTGCGATTTGGAAGATGAAGATAGGGCGATCCAGTGCGATGATAAGGGTTTGATTAAGTTGATCAAGGCGGTGATTGGTGGGGATAGAAGGGAATCGACGGTGAGGATTTATAGGATGATGAAGAGGAGCGGTTGGGGATCCACCATCAAAGCCGATGATTATACGGTTAGGGTTTTGAGCAAGGGCTTAAGGAGGCTCGGGGAAATGGAGATGGCTGATGAGGTCAATATGCAATTTCAAGATTTAGTGGGCAGTTTTTGA

Coding sequence (CDS)

ATGGCTTTCTCTCTTCACTCCACGTTTCTCAAATCTCAAATCCCGATTCCGATTCCGATCTCCGCCACCGCTACCGTCGTCGTTTCCCTTCCGGTACGCTGCGGTCCTCGGGACAACCGAGGACCGCTAGTCAAAGGCAGAACCCTAAGCACCGAAGCAATCCAAGCCATTCAATCTCTAAAACGGGCCGAGAAATCCGACCCGACGAAGCTCGAACAAGTCCTCTCCACTACGCTCTCCCGATTGCTCAAAGCCGACCTCGTCGCCACCTTAAAGGAGCTTCTCCGGCAGGACCGGTGCGCCCTCGCTTTGGAGGTTTTCGCCGTCGTACGATCGGAGTACGGCGCCGATTTAGGGATGTACGCAGAGGTGGCAGCGGCGTTATCGAGGAACGGAGCGGCGGAGGAAATCGACCGGCTGGTTTGCGATTTGGAAGATGAAGATAGGGCGATCCAGTGCGATGATAAGGGTTTGATTAAGTTGATCAAGGCGGTGATTGGTGGGGATAGAAGGGAATCGACGGTGAGGATTTATAGGATGATGAAGAGGAGCGGTTGGGGATCCACCATCAAAGCCGATGATTATACGGTTAGGGTTTTGAGCAAGGGCTTAAGGAGGCTCGGGGAAATGGAGATGGCTGATGAGGTCAATATGCAATTTCAAGATTTAGTGGGCAGTTTTTGA

Protein sequence

MAFSLHSTFLKSQIPIPIPISATATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQSLKRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGADLGMYAEVAAALSRNGAAEEIDRLVCDLEDEDRAIQCDDKGLIKLIKAVIGGDRRESTVRIYRMMKRSGWGSTIKADDYTVRVLSKGLRRLGEMEMADEVNMQFQDLVGSF
Homology
[Close]
BLAST of Cp4.1LG12g08290 vs. Swiss-Prot
Match: PP266_ARATH (Pentatricopeptide repeat-containing protein At3g46870 OS=Arabidopsis thaliana GN=At3g46870 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.7e-08
Identity = 55/187 (29.41%), Postives = 99/187 (52.94%), Query Frame = 1 

Query: 40  RGPLVKGRTL-STEAIQAIQSLKRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQD 99
           RGPL +G+ L   EA+  I  LKR  K D  KL++ + T + RLLK D++A + EL RQ+
Sbjct: 63  RGPLWRGKKLIGKEALFVILGLKRL-KEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQE 122

Query: 100 RCALALEVFAVVRSE--YGADLGMYAEVAAALSRNGAAEEIDRLVCDLEDEDRAIQCDDK 159
             ALA+++F V++ +  Y  D+ MY ++  +L+++   +E   L   ++ E+  +  D +
Sbjct: 123 ETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKEN--LFPDSQ 182

Query: 160 GLIKLIKAVIGGDRRESTVRIYRMMKRSGWGSTIKADDYTVRVLSKGLRRLGEMEMADEV 219
              ++I+  +        + +Y  M +    S    ++   RVL KGL  L    + ++V
Sbjct: 183 TYTEVIRGFLRDGCPADAMNVYEDMLK----SPDPPEELPFRVLLKGL--LPHPLLRNKV 240

Query: 220 NMQFQDL 224
              F++L
Sbjct: 243 KKDFEEL 240

[Close]
BLAST of Cp4.1LG12g08290 vs. Swiss-Prot
Match: PPR89_ARATH (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.1e-07
Identity = 49/177 (27.68%), Postives = 92/177 (51.98%), Query Frame = 1 

Query: 49  LSTEAIQAIQSLKRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFA 108
           +S E + A + LKR + +   +L++ + + +SRLLK+DLV+ L E  RQ++  L ++++ 
Sbjct: 1   MSKEGLIAAKELKRLQ-TQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYE 60

Query: 109 VVRSE--YGADLGMYAEVAAALSRNGAAEEIDRLVCDLEDEDRAIQCDDKGLIKLIKAVI 168
           VVR E  Y  D+  Y ++   L+RN   +E  ++  DL+ E+  +  D      L++  +
Sbjct: 61  VVRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEE--VLFDQHTFGDLVRGFL 120

Query: 169 GGDRRESTVRIYRMMKRSGWGSTIKADDYTVRVLSKGLRRLGEMEMADEVNMQFQDL 224
             +     +R+Y  M+     S  +      RV+ KGL  +   E+ ++V   F +L
Sbjct: 121 DNELPLEAMRLYGEMRE----SPDRPLSLPFRVILKGL--VPYPELREKVKDDFLEL 168

[Close]
BLAST of Cp4.1LG12g08290 vs. TrEMBL
Match: A0A0A0K6N6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G447050 PE=4 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 9.8e-93
Identity = 188/230 (81.74%), Postives = 207/230 (90.00%), Query Frame = 1 

Query: 1   MAFSLHSTFLKSQIPIPIPIS-ATATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQS 60
           MA SLHSTFLKSQI IPIP S AT+ V VS  VRCGPRDNRGPLVKGRTLS EAIQAIQS
Sbjct: 1   MASSLHSTFLKSQISIPIPASTATSPVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQS 60

Query: 61  LKRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGADLG 120
           LKRAE+SDPTKL+QVLSTTLSRLLKADLVATLKELLRQ+RCALALEVFAV++SEY A+LG
Sbjct: 61  LKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIKSEYRAELG 120

Query: 121 MYAEVAAALSRNGAAEEIDRLVCDLEDEDRAIQC--DDKGLIKLIKAVIGGDRRESTVRI 180
           +YAEVAAALSRNGAAEEIDRLV DL+  D  I+   DDKGLIKLIKAVI G+RRESTVRI
Sbjct: 121 LYAEVAAALSRNGAAEEIDRLVSDLDGGDGVIEWGDDDKGLIKLIKAVISGNRRESTVRI 180

Query: 181 YRMMKRSGWGSTIKADDYTVRVLSKGLRRLGEMEMADEVNMQFQDLVGSF 228
           YRMM+R GWGS IKADDY ++VLSKGLRRLGE+E+ADE+N +F+DLVGSF
Sbjct: 181 YRMMRRKGWGSMIKADDYMIKVLSKGLRRLGEIELADEINREFEDLVGSF 230

[Close]
BLAST of Cp4.1LG12g08290 vs. TrEMBL
Match: D7U0G1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g04100 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 2.0e-61
Identity = 133/219 (60.73%), Postives = 168/219 (76.71%), Query Frame = 1 

Query: 4   SLHSTFLKSQIPIPIPISATATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQSLKRA 63
           +LHS F     PI  P+  T T     P+RCGPRDNRGPL+KGR LS EAIQAIQSLKRA
Sbjct: 5   ALHSNFALFS-PIKKPVQ-TITTTSYTPIRCGPRDNRGPLMKGRVLSIEAIQAIQSLKRA 64

Query: 64  EKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSE--YGADLGMY 123
            + DPTK++  LS TLSRL+KADL+ATL ELLRQD+C LAL VF+ VRSE  Y  +L +Y
Sbjct: 65  HRGDPTKIDDFLSKTLSRLVKADLLATLNELLRQDQCDLALRVFSAVRSELWYKTELSLY 124

Query: 124 AEVAAALSRNGAAEEIDRLVCDLEDEDRAIQCDDKGLIKLIKAVIGGDRRESTVRIYRMM 183
           A++ +AL+R G  EEIDRL+CDLE E  +++CDDKG+++L+KAVI  +RR+STVRIY +M
Sbjct: 125 ADLVSALARKGMKEEIDRLICDLEGEG-SVRCDDKGIVRLVKAVIAAERRDSTVRIYGLM 184

Query: 184 KRSGWGSTIKADDYTVRVLSKGLRRLGEMEMADEVNMQF 221
           KRSG G     D+Y  RVLS+GLRRLGE+ +ADEV+++F
Sbjct: 185 KRSGCGG---GDEYVGRVLSRGLRRLGELGVADEVDLEF 217

[Close]
BLAST of Cp4.1LG12g08290 vs. TrEMBL
Match: W9R688_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026238 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 4.5e-61
Identity = 133/214 (62.15%), Postives = 164/214 (76.64%), Query Frame = 1 

Query: 9   FLKSQIPIPIPISATATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQSLKRAEKSDP 68
           FLK+ +PIP P + TA      P+RCGPRDNRGPLVKGR LS EAIQA+Q+LKRA +SDP
Sbjct: 12  FLKTPLPIPKPNTTTAITSSYAPIRCGPRDNRGPLVKGRILSIEAIQAVQALKRAHRSDP 71

Query: 69  TKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGADLGMYAEVAAAL 128
           + L  V S TLSRL+K+DL+A LKELLRQD CALAL VF+ VRSEY  DL +YA++  AL
Sbjct: 72  STLPTVASKTLSRLIKSDLLAALKELLRQDHCALALHVFSAVRSEYRPDLSLYADMVIAL 131

Query: 129 SRNGAAEEIDRLVCDLEDED-RAIQCDDKGLIKLIKAVIGGDRRESTVRIYRMMKRSGWG 188
            +NG AE+IDRL+ DLE E   A+  D+KGLI+L++AVI  +RRESTVRIY M+K    G
Sbjct: 132 EKNGMAEDIDRLIFDLEMEGCGAVGDDNKGLIRLVRAVIAAERRESTVRIYGMLKMGVLG 191

Query: 189 ST-IKADDYTVRVLSKGLRRLGEMEMADEVNMQF 221
           S+  +ADD+TV  LSKGLRRLGE  +ADEV+ +F
Sbjct: 192 SSGFEADDHTVGALSKGLRRLGEAALADEVDREF 225

[Close]
BLAST of Cp4.1LG12g08290 vs. TrEMBL
Match: M5WV79_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011224mg PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.7e-60
Identity = 127/200 (63.50%), Postives = 160/200 (80.00%), Query Frame = 1 

Query: 17  PIPISATATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQSLKRAEKSDPTKLEQVLS 76
           P+ ++   T+   + VRCGPRDNRGPLVKGR LS EAIQA+Q+LKRA++SDPT+L  + S
Sbjct: 17  PLTLTTNRTIT-HVSVRCGPRDNRGPLVKGRVLSIEAIQAVQALKRAQRSDPTELPTLAS 76

Query: 77  TTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGADLGMYAEVAAALSRNGAAEE 136
            TLSRL+KADLVA L+ELLRQ++C LAL+VF+  RSEY  DL +YAE+A AL+RNG AE+
Sbjct: 77  KTLSRLIKADLVAALRELLRQEQCHLALQVFSTFRSEYPPDLSVYAEMALALARNGMAED 136

Query: 137 IDRLVCDLEDEDRAIQCDDKGLIKLIKAVIGGDRRESTVRIYRMMKRSGWGST-IKADDY 196
           +D L+C LE E       DKGLI+LI+AV+  DRRESTV+IY M+KR+GWGS+  KAD+Y
Sbjct: 137 MDGLICVLEKESGVQWDSDKGLIRLIRAVVTADRRESTVKIYEMLKRNGWGSSDFKADEY 196

Query: 197 TVRVLSKGLRRLGEMEMADE 216
            VRVLSKGLRRLGE+ +ADE
Sbjct: 197 MVRVLSKGLRRLGEVGLADE 215

[Close]
BLAST of Cp4.1LG12g08290 vs. TrEMBL
Match: K4BMK0_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 3.3e-56
Identity = 119/222 (53.60%), Postives = 162/222 (72.97%), Query Frame = 1 

Query: 1   MAFSLHSTFLKSQIPIPIPISATATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQSL 60
           ++ +L  T   S + +P P S T      + VRCGPR NRGPLVKGR LS EAIQAIQ+L
Sbjct: 5   LSTNLKFTLQHSSVTLPPPKSTTRR---KISVRCGPRSNRGPLVKGRILSIEAIQAIQAL 64

Query: 61  KRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGA-DLG 120
           KRA+++DP+++E  +S TL+RL+K DL+A  KELLRQD C LAL+VF  V+SE    DLG
Sbjct: 65  KRAQRTDPSQIEAQVSKTLNRLIKTDLIAAYKELLRQDLCDLALKVFPAVQSECDVPDLG 124

Query: 121 MYAEVAAALSRNGAAEEIDRLVCDLEDEDRAIQCDDKGLIKLIKAVIGGDRRESTVRIYR 180
           +YA++  AL+R G AE ID L+CDLE   R I+CDDK L++L++A++ G++ ESTVR+Y 
Sbjct: 125 LYADMVLALTRTGFAEPIDELICDLEKVGR-IECDDKSLVRLVRALVEGEQVESTVRVYE 184

Query: 181 MMKRSGWGSTIKADDYTVRVLSKGLRRLGEMEMADEVNMQFQ 222
           +MK+SGWGS  + D+Y  +VL +G +R G+ EMADEV+ Q Q
Sbjct: 185 LMKKSGWGSRFEIDEYVAKVLRRGFKRFGKEEMADEVDQQLQ 222

[Close]
BLAST of Cp4.1LG12g08290 vs. TAIR10
Match: AT3G27750.1 (AT3G27750.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 185.7 bits (470), Expect = 3.3e-47
Identity = 113/228 (49.56%), Postives = 158/228 (69.30%), Query Frame = 1 

Query: 1   MAFSLHSTFLKSQIPIPIPISATATVVVS----LPVRCGPRDNRGPLVKGRTLSTEAIQA 60
           MA SL  T      P  +  S T +V+V     + +RCGPRDNRGPL+KGR LSTEAIQ+
Sbjct: 1   MALSLSQTR-----PPSLSHSHTLSVIVPKRTFVSIRCGPRDNRGPLLKGRILSTEAIQS 60

Query: 61  IQSLKRAEKSDPTKLEQVLSTT---LSRLLKADLVATLKELLRQDRCALALEVFAVVRSE 120
           IQSLKRA ++  +     LS T   L RL+K+DL++ L+ELLRQD C LA+ V + +R+E
Sbjct: 61  IQSLKRAHRTGVS-----LSLTLRPLRRLIKSDLISVLRELLRQDYCTLAVHVLSTLRTE 120

Query: 121 Y-GADLGMYAEVAAALSRNGAAEEIDRLVCDLEDEDRAIQCDDKGLIKLIKAVIGGDRRE 180
           Y   DL +YA++  AL+RN   +EIDRL+ +++  D+  + DDK L KLI+AV+G +RRE
Sbjct: 121 YPPLDLVLYADIVNALTRNKEFDEIDRLIGEIDGIDQ--RSDDKALAKLIRAVVGAERRE 180

Query: 181 STVRIYRMMKRSGWGS-TIKADDYTVRVLSKGLRRLGEMEMADEVNMQ 220
           S VR+Y +M+ SGWGS + +AD+Y   VLSKGL RLGE ++A +V+++
Sbjct: 181 SVVRVYTLMRESGWGSESWEADEYVAEVLSKGLLRLGEPDLASQVSLK 216

[Close]
BLAST of Cp4.1LG12g08290 vs. TAIR10
Match: AT5G09320.1 (AT5G09320.1 Vacuolar sorting protein 9 (VPS9) domain)

HSP 1 Score: 86.7 bits (213), Expect = 2.1e-17
Identity = 65/203 (32.02%), Postives = 103/203 (50.74%), Query Frame = 1 

Query: 39  NRGPLVKGRTLSTEAIQAIQSLKRAE--------------KSDPTKLEQVLSTTLSRLLK 98
           NR PL +GR LS EAIQA+Q+LKRA                S    L++V+ +   RLLK
Sbjct: 495 NRKPLQRGRMLSIEAIQAVQALKRANPLLPPPPVPSTSTTSSSSALLDRVIISKFRRLLK 554

Query: 99  ADLVATLKELLRQDRCALALEVFAVVRSE--YGADLGMYAEVAAALSRNGAAEEIDRLVC 158
            D+VA L+ELLRQ+ C+LAL+VF  +R E  Y   + MY ++   ++ N   EE++ L  
Sbjct: 555 FDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMADNSLMEEVNYLYS 614

Query: 159 DLEDEDRAIQCDDKGLIKLIKAVIGGDRRESTVRIYRMMKRSGWGSTIKADDYTVRVLSK 218
            ++ E + +  + +    L+  ++     +  +  Y  M+  G+    + D  + RVL  
Sbjct: 615 AMKSE-KGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGY----EPDRASFRVLVL 674

Query: 219 GLRRLGEMEMADEVNMQFQDLVG 226
           GL   GEM ++  V     +  G
Sbjct: 675 GLESNGEMGLSAIVRQDAHEYYG 692

[Close]
BLAST of Cp4.1LG12g08290 vs. TAIR10
Match: AT3G46870.1 (AT3G46870.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 61.2 bits (147), Expect = 9.3e-10
Identity = 55/187 (29.41%), Postives = 99/187 (52.94%), Query Frame = 1 

Query: 40  RGPLVKGRTL-STEAIQAIQSLKRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQD 99
           RGPL +G+ L   EA+  I  LKR  K D  KL++ + T + RLLK D++A + EL RQ+
Sbjct: 63  RGPLWRGKKLIGKEALFVILGLKRL-KEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQE 122

Query: 100 RCALALEVFAVVRSE--YGADLGMYAEVAAALSRNGAAEEIDRLVCDLEDEDRAIQCDDK 159
             ALA+++F V++ +  Y  D+ MY ++  +L+++   +E   L   ++ E+  +  D +
Sbjct: 123 ETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKEN--LFPDSQ 182

Query: 160 GLIKLIKAVIGGDRRESTVRIYRMMKRSGWGSTIKADDYTVRVLSKGLRRLGEMEMADEV 219
              ++I+  +        + +Y  M +    S    ++   RVL KGL  L    + ++V
Sbjct: 183 TYTEVIRGFLRDGCPADAMNVYEDMLK----SPDPPEELPFRVLLKGL--LPHPLLRNKV 240

Query: 220 NMQFQDL 224
              F++L
Sbjct: 243 KKDFEEL 240

[Close]
BLAST of Cp4.1LG12g08290 vs. TAIR10
Match: AT1G62350.1 (AT1G62350.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 56.6 bits (135), Expect = 2.3e-08
Identity = 49/177 (27.68%), Postives = 92/177 (51.98%), Query Frame = 1 

Query: 49  LSTEAIQAIQSLKRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFA 108
           +S E + A + LKR + +   +L++ + + +SRLLK+DLV+ L E  RQ++  L ++++ 
Sbjct: 1   MSKEGLIAAKELKRLQ-TQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYE 60

Query: 109 VVRSE--YGADLGMYAEVAAALSRNGAAEEIDRLVCDLEDEDRAIQCDDKGLIKLIKAVI 168
           VVR E  Y  D+  Y ++   L+RN   +E  ++  DL+ E+  +  D      L++  +
Sbjct: 61  VVRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEE--VLFDQHTFGDLVRGFL 120

Query: 169 GGDRRESTVRIYRMMKRSGWGSTIKADDYTVRVLSKGLRRLGEMEMADEVNMQFQDL 224
             +     +R+Y  M+     S  +      RV+ KGL  +   E+ ++V   F +L
Sbjct: 121 DNELPLEAMRLYGEMRE----SPDRPLSLPFRVILKGL--VPYPELREKVKDDFLEL 168

[Close]
BLAST of Cp4.1LG12g08290 vs. NCBI nr
Match: gi|659124462|ref|XP_008462172.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Cucumis melo])

HSP 1 Score: 350.9 bits (899), Expect = 1.7e-93
Identity = 188/229 (82.10%), Postives = 207/229 (90.39%), Query Frame = 1 

Query: 1   MAFSLHSTFLKSQIPIPIPIS-ATATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQS 60
           MA SLHSTFLKSQI IPIP S ATA V VS  VRCGPRDNRGPLVKGRTLS EAIQAIQS
Sbjct: 28  MASSLHSTFLKSQISIPIPTSTATAAVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQS 87

Query: 61  LKRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGADLG 120
           LKRAE+SDPTKL+QVLSTTLSRLLKADLVATLKELLRQ+RCALALEVFAV+RSEY A+LG
Sbjct: 88  LKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIRSEYRAELG 147

Query: 121 MYAEVAAALSRNGAAEEIDRLVCDLEDEDRAIQC--DDKGLIKLIKAVIGGDRRESTVRI 180
           +YAEVAAALSRNGAAEEIDRLVCDL+  D  I+   DDKGLIKLIKAVI G+RRESTVRI
Sbjct: 148 LYAEVAAALSRNGAAEEIDRLVCDLDGRDGVIEWGDDDKGLIKLIKAVISGNRRESTVRI 207

Query: 181 YRMMKRSGWGSTIKADDYTVRVLSKGLRRLGEMEMADEVNMQFQDLVGS 227
           YRMM+R+GWGS IK DDY ++V+SKGLRR+GE+E+ADE+N +FQDLVGS
Sbjct: 208 YRMMRRNGWGSMIKGDDYMIKVMSKGLRRVGEIELADEINREFQDLVGS 256

[Close]
BLAST of Cp4.1LG12g08290 vs. NCBI nr
Match: gi|449448168|ref|XP_004141838.1| (PREDICTED: uncharacterized protein LOC101217831 [Cucumis sativus])

HSP 1 Score: 347.8 bits (891), Expect = 1.4e-92
Identity = 188/230 (81.74%), Postives = 207/230 (90.00%), Query Frame = 1 

Query: 1   MAFSLHSTFLKSQIPIPIPIS-ATATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQS 60
           MA SLHSTFLKSQI IPIP S AT+ V VS  VRCGPRDNRGPLVKGRTLS EAIQAIQS
Sbjct: 1   MASSLHSTFLKSQISIPIPASTATSPVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQS 60

Query: 61  LKRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGADLG 120
           LKRAE+SDPTKL+QVLSTTLSRLLKADLVATLKELLRQ+RCALALEVFAV++SEY A+LG
Sbjct: 61  LKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIKSEYRAELG 120

Query: 121 MYAEVAAALSRNGAAEEIDRLVCDLEDEDRAIQC--DDKGLIKLIKAVIGGDRRESTVRI 180
           +YAEVAAALSRNGAAEEIDRLV DL+  D  I+   DDKGLIKLIKAVI G+RRESTVRI
Sbjct: 121 LYAEVAAALSRNGAAEEIDRLVSDLDGGDGVIEWGDDDKGLIKLIKAVISGNRRESTVRI 180

Query: 181 YRMMKRSGWGSTIKADDYTVRVLSKGLRRLGEMEMADEVNMQFQDLVGSF 228
           YRMM+R GWGS IKADDY ++VLSKGLRRLGE+E+ADE+N +F+DLVGSF
Sbjct: 181 YRMMRRKGWGSMIKADDYMIKVLSKGLRRLGEIELADEINREFEDLVGSF 230

[Close]
BLAST of Cp4.1LG12g08290 vs. NCBI nr
Match: gi|1009112149|ref|XP_015866768.1| (PREDICTED: uncharacterized protein LOC107404331 [Ziziphus jujuba])

HSP 1 Score: 262.7 bits (670), Expect = 6.0e-67
Identity = 142/224 (63.39%), Postives = 180/224 (80.36%), Query Frame = 1 

Query: 1   MAFSLH---STFLKSQIPIPIPISATATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAI 60
           MA SLH   +TFLK+ +P     ++TA+  +   +RCGPRDNRGPLVKGR LS EAIQA+
Sbjct: 1   MATSLHPNPTTFLKTHLPKSNLNNSTASRFL---IRCGPRDNRGPLVKGRVLSIEAIQAV 60

Query: 61  QSLKRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGAD 120
           QSLKRA++SDPT +  ++S TLSRL+KADLVATLKELLRQD+CALAL VF+ +RSE+   
Sbjct: 61  QSLKRAQRSDPTNISTLVSKTLSRLIKADLVATLKELLRQDQCALALHVFSNLRSEHEPG 120

Query: 121 LGMYAEVAAALSRNGAAEEIDRLVCDLEDEDRAIQCDDKGLIKLIKAVIGGDRRESTVRI 180
           L +YA++  AL++NG AEEIDRL+ DLE E   I CDDKGLI+LI+AV+G +RRESTVRI
Sbjct: 121 LSLYADLVMALAKNGMAEEIDRLIFDLEKEGGGIPCDDKGLIRLIRAVVGAERRESTVRI 180

Query: 181 YRMMKRSGWGST-IKADDYTVRVLSKGLRRLGEMEMADEVNMQF 221
           Y MMKRSGWGS+  KAD+Y V+ LS+GLRR+GE+ +ADEV+ +F
Sbjct: 181 YGMMKRSGWGSSGFKADEYMVKALSRGLRRVGEVGLADEVDKEF 221

[Close]
BLAST of Cp4.1LG12g08290 vs. NCBI nr
Match: gi|658014676|ref|XP_008342662.1| (PREDICTED: uncharacterized protein LOC103405437 [Malus domestica])

HSP 1 Score: 258.1 bits (658), Expect = 1.5e-65
Identity = 138/225 (61.33%), Postives = 175/225 (77.78%), Query Frame = 1 

Query: 1   MAFSLHSTFLKSQIPIPIPISATATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQSL 60
           MA SLH+       P P+  + T +    + +RCGPRDNRGPLVKGR LS EAIQA+Q+L
Sbjct: 1   MASSLHTNATHFLSPKPVAQTPTRSTT-RVSIRCGPRDNRGPLVKGRVLSIEAIQAVQTL 60

Query: 61  KRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGADLGM 120
           KRA++SDP +   ++S TLSRL+KADLVA L+ELLRQD+C LAL+VF+ VRSEY  DL +
Sbjct: 61  KRAQRSDPAQFPALVSKTLSRLIKADLVAALRELLRQDQCHLALQVFSAVRSEYPPDLSV 120

Query: 121 YAEVAAALSRNGAAEEIDRLVCDLEDEDRAIQCDDKGLIKLIKAVIGGDRRESTVRIYRM 180
           YAE+A AL+RN   E++DRL+CDLE E       DKGLI+LI+AVIG DRRESTVRIY+M
Sbjct: 121 YAEMALALARNEMGEDMDRLICDLETESGVQWGSDKGLIRLIRAVIGADRRESTVRIYKM 180

Query: 181 MKRSGWGST-IKADDYTVRVLSKGLRRLGEMEMADEVNMQFQDLV 225
           +KR+GWGST  +AD+Y VRVLSKGLRRLGE+ +ADEV+++F  L+
Sbjct: 181 LKRNGWGSTGFEADEYMVRVLSKGLRRLGEVGLADEVDLKFGSLL 224

[Close]
BLAST of Cp4.1LG12g08290 vs. NCBI nr
Match: gi|645244561|ref|XP_008228478.1| (PREDICTED: uncharacterized protein LOC103327886 [Prunus mume])

HSP 1 Score: 253.4 bits (646), Expect = 3.6e-64
Identity = 141/224 (62.95%), Postives = 175/224 (78.12%), Query Frame = 1 

Query: 1   MAFSLHST---FLKSQIPIPIPISATATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAI 60
           MA SLH     FLK + P+ +  + T T V    VRCGPRDNRGPLVKGR LS EAIQA+
Sbjct: 1   MASSLHPNPTHFLKLK-PLTLTTNRTVTHV---SVRCGPRDNRGPLVKGRVLSIEAIQAV 60

Query: 61  QSLKRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGAD 120
           Q+LKRA++SDPT+L  + S TLSRL+KADLVA L+ELLRQ++C LAL+VF+  RSEY  D
Sbjct: 61  QALKRAQRSDPTQLPTLASKTLSRLIKADLVAALRELLRQEQCHLALQVFSTFRSEYPPD 120

Query: 121 LGMYAEVAAALSRNGAAEEIDRLVCDLEDEDRAIQCDDKGLIKLIKAVIGGDRRESTVRI 180
           L +YAE+A AL+RNG AE++DRL+C LE E       DKGLI+LI+AV+  DRRESTV+I
Sbjct: 121 LSVYAEMALALARNGMAEDMDRLICVLEKESGVPWDSDKGLIRLIRAVVSADRRESTVKI 180

Query: 181 YRMMKRSGWGST-IKADDYTVRVLSKGLRRLGEMEMADEVNMQF 221
           Y M+KR+GWGS+  KAD+Y VRVLSKGLRRLGE+ +ADEV+M+F
Sbjct: 181 YEMLKRNGWGSSDFKADEYMVRVLSKGLRRLGEVGLADEVDMKF 220

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g08290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP266_ARATH1.7e-0829.41Pentatricopeptide repeat-containing protein At3g46870 OS=Arabidopsis thaliana GN... [more]
PPR89_ARATH4.1e-0727.68Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana GN... [more]
BLAST of Cp4.1LG12g08290 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6N6_CUCSA9.8e-9381.74Uncharacterized protein OS=Cucumis sativus GN=Csa_7G447050 PE=4 SV=1[more]
D7U0G1_VITVI2.0e-6160.73Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g04100 PE=4 SV=... [more]
W9R688_9ROSA4.5e-6162.15Uncharacterized protein OS=Morus notabilis GN=L484_026238 PE=4 SV=1[more]
M5WV79_PRUPE1.7e-6063.50Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011224mg PE=4 SV=1[more]
K4BMK0_SOLLC3.3e-5653.60Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
BLAST of Cp4.1LG12g08290 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G27750.13.3e-4749.56 FUNCTIONS IN: molecular_function unknown[more]
AT5G09320.12.1e-1732.02 Vacuolar sorting protein 9 (VPS9) domain[more]
AT3G46870.19.3e-1029.41 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G62350.12.3e-0827.68 Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of Cp4.1LG12g08290 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659124462|ref|XP_008462172.1|1.7e-9382.10PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Cucumis melo][more]
gi|449448168|ref|XP_004141838.1|1.4e-9281.74PREDICTED: uncharacterized protein LOC101217831 [Cucumis sativus][more]
gi|1009112149|ref|XP_015866768.1|6.0e-6763.39PREDICTED: uncharacterized protein LOC107404331 [Ziziphus jujuba][more]
gi|658014676|ref|XP_008342662.1|1.5e-6561.33PREDICTED: uncharacterized protein LOC103405437 [Malus domestica][more]
gi|645244561|ref|XP_008228478.1|3.6e-6462.95PREDICTED: uncharacterized protein LOC103327886 [Prunus mume][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009658 chloroplast organization
biological_process GO:0000373 Group II intron splicing
biological_process GO:0009987 cellular process
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
cellular_component GO:0005575 cellular_component
molecular_function GO:0003723 RNA binding
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g08290.1Cp4.1LG12g08290.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g08290Cucsa.359300Cucumber (Gy14) v1cgycpeB0936
Cp4.1LG12g08290CmaCh17G007900Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g08290CmoCh17G007570Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g08290Cla015459Watermelon (97103) v1cpewmB131
Cp4.1LG12g08290Csa7G447050Cucumber (Chinese Long) v2cpecuB161
Cp4.1LG12g08290MELO3C024259Melon (DHL92) v3.5.1cpemeB123
Cp4.1LG12g08290ClCG09G001870Watermelon (Charleston Gray)cpewcgB126
Cp4.1LG12g08290CSPI07G21570Wild cucumber (PI 183967)cpecpiB163
Cp4.1LG12g08290Lsi02G028110Bottle gourd (USVL1VR-Ls)cpelsiB113
Cp4.1LG12g08290MELO3C024259.2Melon (DHL92) v3.6.1cpemedB150
Cp4.1LG12g08290CsaV3_7G033470Cucumber (Chinese Long) v3cpecucB0188
Cp4.1LG12g08290Bhi09G000148Wax gourdcpewgoB0208
Cp4.1LG12g08290Carg09512Silver-seed gourdcarcpeB1424
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g08290Cucurbita pepo (Zucchini)cpecpeB157
Cp4.1LG12g08290Cucurbita pepo (Zucchini)cpecpeB178
Cp4.1LG12g08290Cucurbita pepo (Zucchini)cpecpeB181
Cp4.1LG12g08290Cucurbita pepo (Zucchini)cpecpeB182
Cp4.1LG12g08290Cucurbita pepo (Zucchini)cpecpeB187
Cp4.1LG12g08290Cucurbita maxima (Rimu)cmacpeB257
Cp4.1LG12g08290Cucurbita maxima (Rimu)cmacpeB466
Cp4.1LG12g08290Cucurbita maxima (Rimu)cmacpeB903
Cp4.1LG12g08290Cucurbita moschata (Rifu)cmocpeB221
Cp4.1LG12g08290Cucurbita moschata (Rifu)cmocpeB426
Cp4.1LG12g08290Cucurbita moschata (Rifu)cmocpeB839
Cp4.1LG12g08290Bottle gourd (USVL1VR-Ls)cpelsiB127
Cp4.1LG12g08290Watermelon (Charleston Gray)cpewcgB148
Cp4.1LG12g08290Watermelon (97103) v1cpewmB145
Cp4.1LG12g08290Melon (DHL92) v3.5.1cpemeB132
Cp4.1LG12g08290Cucumber (Gy14) v2cgybcpeB306
Cp4.1LG12g08290Cucumber (Gy14) v2cgybcpeB906
Cp4.1LG12g08290Melon (DHL92) v3.6.1cpemedB159
Cp4.1LG12g08290Silver-seed gourdcarcpeB0182
Cp4.1LG12g08290Silver-seed gourdcarcpeB0171
Cp4.1LG12g08290Silver-seed gourdcarcpeB0280
Cp4.1LG12g08290Silver-seed gourdcarcpeB1049
Cp4.1LG12g08290Cucumber (Chinese Long) v3cpecucB0156
Cp4.1LG12g08290Wax gourdcpewgoB0190