CmaCh17G007900 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh17G007900
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Pentatricopeptide repeat-containing protein
Location	Cma_Chr17 : 6284699 .. 6285382 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTCTCTCTTCACTCCACGTTTCTCAAATCTCAAATCCCGATTCCGATTCCGATCTCCGCCACCGCTACCGTCGTCGTTTCCCTTCCGGTACGCTGCGGTCCTCGGGACAACCGAGGACCGCTAGTCAAAGGTAGAACCCTAAGCACCGAAGCAATCCAAGCCATTCAATCTCTAAAACGGGCCGAGAAATCAGACCCGACGAAGCTCGAACAAGTCCTCTCCACTACTCTCTCCCGATTGCTCAAAGCCGACCTCGTCGCCACCTTAAAGGAGCTCCTCCGGCAGGACCGGTGCGCCCTAGCTTTGGAGGTTTTCGCCGTCGTACGATCGGAGTACGGTGTCGATTTAGGGATGTACGCAGAGGTGGCGGCGGCGTTATCGAGGAACGGAGCGATGGAGGAAATCGACCGGTTGGTTTGCGATTTGGAAGATGAAGATAGGGTGATCCAGTGCGATGACAAGGGCTTGATTAAGTTGATCAAGGCGGTGATTGGTGGGGATAGAAGGGAATCGACGGTGAGGATTTATAGGATGATGAAGAGGAGCGGTTGGGGATCCACCATCAAAGCCGATGATTATATGGTTAGGGTTTTGAGCAAGGGCTTAAGGAGGCTTGGGGAAATGGAGATGGCTGATGAGATCAATATGCAATTTCAAGATTTAGTGGGCAGTTTTTGA

mRNA sequence

ATGGCTTTCTCTCTTCACTCCACGTTTCTCAAATCTCAAATCCCGATTCCGATTCCGATCTCCGCCACCGCTACCGTCGTCGTTTCCCTTCCGGTACGCTGCGGTCCTCGGGACAACCGAGGACCGCTAGTCAAAGGTAGAACCCTAAGCACCGAAGCAATCCAAGCCATTCAATCTCTAAAACGGGCCGAGAAATCAGACCCGACGAAGCTCGAACAAGTCCTCTCCACTACTCTCTCCCGATTGCTCAAAGCCGACCTCGTCGCCACCTTAAAGGAGCTCCTCCGGCAGGACCGGTGCGCCCTAGCTTTGGAGGTTTTCGCCGTCGTACGATCGGAGTACGGTGTCGATTTAGGGATGTACGCAGAGGTGGCGGCGGCGTTATCGAGGAACGGAGCGATGGAGGAAATCGACCGGTTGGTTTGCGATTTGGAAGATGAAGATAGGGTGATCCAGTGCGATGACAAGGGCTTGATTAAGTTGATCAAGGCGGTGATTGGTGGGGATAGAAGGGAATCGACGGTGAGGATTTATAGGATGATGAAGAGGAGCGGTTGGGGATCCACCATCAAAGCCGATGATTATATGGTTAGGGTTTTGAGCAAGGGCTTAAGGAGGCTTGGGGAAATGGAGATGGCTGATGAGATCAATATGCAATTTCAAGATTTAGTGGGCAGTTTTTGA

Coding sequence (CDS)

ATGGCTTTCTCTCTTCACTCCACGTTTCTCAAATCTCAAATCCCGATTCCGATTCCGATCTCCGCCACCGCTACCGTCGTCGTTTCCCTTCCGGTACGCTGCGGTCCTCGGGACAACCGAGGACCGCTAGTCAAAGGTAGAACCCTAAGCACCGAAGCAATCCAAGCCATTCAATCTCTAAAACGGGCCGAGAAATCAGACCCGACGAAGCTCGAACAAGTCCTCTCCACTACTCTCTCCCGATTGCTCAAAGCCGACCTCGTCGCCACCTTAAAGGAGCTCCTCCGGCAGGACCGGTGCGCCCTAGCTTTGGAGGTTTTCGCCGTCGTACGATCGGAGTACGGTGTCGATTTAGGGATGTACGCAGAGGTGGCGGCGGCGTTATCGAGGAACGGAGCGATGGAGGAAATCGACCGGTTGGTTTGCGATTTGGAAGATGAAGATAGGGTGATCCAGTGCGATGACAAGGGCTTGATTAAGTTGATCAAGGCGGTGATTGGTGGGGATAGAAGGGAATCGACGGTGAGGATTTATAGGATGATGAAGAGGAGCGGTTGGGGATCCACCATCAAAGCCGATGATTATATGGTTAGGGTTTTGAGCAAGGGCTTAAGGAGGCTTGGGGAAATGGAGATGGCTGATGAGATCAATATGCAATTTCAAGATTTAGTGGGCAGTTTTTGA

Protein sequence

MAFSLHSTFLKSQIPIPIPISATATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQSLKRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGVDLGMYAEVAAALSRNGAMEEIDRLVCDLEDEDRVIQCDDKGLIKLIKAVIGGDRRESTVRIYRMMKRSGWGSTIKADDYMVRVLSKGLRRLGEMEMADEINMQFQDLVGSF

Homology

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BLAST of CmaCh17G007900 vs. Swiss-Prot
Match: PP266_ARATH (Pentatricopeptide repeat-containing protein At3g46870 OS=Arabidopsis thaliana GN=At3g46870 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.3e-09
Identity = 55/187 (29.41%), Postives = 100/187 (53.48%), Query Frame = 1


Query: 40  RGPLVKGRTL-STEAIQAIQSLKRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQD 99
           RGPL +G+ L   EA+  I  LKR  K D  KL++ + T + RLLK D++A + EL RQ+
Sbjct: 63  RGPLWRGKKLIGKEALFVILGLKRL-KEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQE 122

Query: 100 RCALALEVFAVVRSE--YGVDLGMYAEVAAALSRNGAMEEIDRLVCDLEDEDRVIQCDDK 159
             ALA+++F V++ +  Y  D+ MY ++  +L+++  M+E   L   ++ E+  +  D +
Sbjct: 123 ETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKEN--LFPDSQ 182

Query: 160 GLIKLIKAVIGGDRRESTVRIYRMMKRSGWGSTIKADDYMVRVLSKGLRRLGEMEMADEI 219
              ++I+  +        + +Y  M +    S    ++   RVL KGL  L    + +++
Sbjct: 183 TYTEVIRGFLRDGCPADAMNVYEDMLK----SPDPPEELPFRVLLKGL--LPHPLLRNKV 240

Query: 220 NMQFQDL 224
              F++L
Sbjct: 243 KKDFEEL 240

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BLAST of CmaCh17G007900 vs. Swiss-Prot
Match: PPR89_ARATH (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.1e-07
Identity = 40/138 (28.99%), Postives = 77/138 (55.80%), Query Frame = 1


Query: 49  LSTEAIQAIQSLKRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFA 108
           +S E + A + LKR + +   +L++ + + +SRLLK+DLV+ L E  RQ++  L ++++ 
Sbjct: 1   MSKEGLIAAKELKRLQ-TQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYE 60

Query: 109 VVRSE--YGVDLGMYAEVAAALSRNGAMEEIDRLVCDLEDEDRVIQCDDKGLIKLIKAVI 168
           VVR E  Y  D+  Y ++   L+RN  ++E  ++  DL+ E+  +  D      L++  +
Sbjct: 61  VVRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEE--VLFDQHTFGDLVRGFL 120

Query: 169 GGDRRESTVRIYRMMKRS 185
             +     +R+Y  M+ S
Sbjct: 121 DNELPLEAMRLYGEMRES 135

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BLAST of CmaCh17G007900 vs. TrEMBL
Match: A0A0A0K6N6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G447050 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 3.4e-93
Identity = 189/230 (82.17%), Postives = 207/230 (90.00%), Query Frame = 1


Query: 1   MAFSLHSTFLKSQIPIPIPIS-ATATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQS 60
           MA SLHSTFLKSQI IPIP S AT+ V VS  VRCGPRDNRGPLVKGRTLS EAIQAIQS
Sbjct: 1   MASSLHSTFLKSQISIPIPASTATSPVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQS 60

Query: 61  LKRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGVDLG 120
           LKRAE+SDPTKL+QVLSTTLSRLLKADLVATLKELLRQ+RCALALEVFAV++SEY  +LG
Sbjct: 61  LKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIKSEYRAELG 120

Query: 121 MYAEVAAALSRNGAMEEIDRLVCDLEDEDRVIQC--DDKGLIKLIKAVIGGDRRESTVRI 180
           +YAEVAAALSRNGA EEIDRLV DL+  D VI+   DDKGLIKLIKAVI G+RRESTVRI
Sbjct: 121 LYAEVAAALSRNGAAEEIDRLVSDLDGGDGVIEWGDDDKGLIKLIKAVISGNRRESTVRI 180

Query: 181 YRMMKRSGWGSTIKADDYMVRVLSKGLRRLGEMEMADEINMQFQDLVGSF 228
           YRMM+R GWGS IKADDYM++VLSKGLRRLGE+E+ADEIN +F+DLVGSF
Sbjct: 181 YRMMRRKGWGSMIKADDYMIKVLSKGLRRLGEIELADEINREFEDLVGSF 230

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BLAST of CmaCh17G007900 vs. TrEMBL
Match: D7U0G1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g04100 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.5e-61
Identity = 133/219 (60.73%), Postives = 168/219 (76.71%), Query Frame = 1


Query: 4   SLHSTFLKSQIPIPIPISATATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQSLKRA 63
           +LHS F     PI  P+  T T     P+RCGPRDNRGPL+KGR LS EAIQAIQSLKRA
Sbjct: 5   ALHSNFALFS-PIKKPVQ-TITTTSYTPIRCGPRDNRGPLMKGRVLSIEAIQAIQSLKRA 64

Query: 64  EKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSE--YGVDLGMY 123
            + DPTK++  LS TLSRL+KADL+ATL ELLRQD+C LAL VF+ VRSE  Y  +L +Y
Sbjct: 65  HRGDPTKIDDFLSKTLSRLVKADLLATLNELLRQDQCDLALRVFSAVRSELWYKTELSLY 124

Query: 124 AEVAAALSRNGAMEEIDRLVCDLEDEDRVIQCDDKGLIKLIKAVIGGDRRESTVRIYRMM 183
           A++ +AL+R G  EEIDRL+CDLE E  V +CDDKG+++L+KAVI  +RR+STVRIY +M
Sbjct: 125 ADLVSALARKGMKEEIDRLICDLEGEGSV-RCDDKGIVRLVKAVIAAERRDSTVRIYGLM 184

Query: 184 KRSGWGSTIKADDYMVRVLSKGLRRLGEMEMADEINMQF 221
           KRSG G     D+Y+ RVLS+GLRRLGE+ +ADE++++F
Sbjct: 185 KRSGCGG---GDEYVGRVLSRGLRRLGELGVADEVDLEF 217

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BLAST of CmaCh17G007900 vs. TrEMBL
Match: M5WV79_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011224mg PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 4.5e-61
Identity = 128/200 (64.00%), Postives = 161/200 (80.50%), Query Frame = 1


Query: 17  PIPISATATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQSLKRAEKSDPTKLEQVLS 76
           P+ ++   T+   + VRCGPRDNRGPLVKGR LS EAIQA+Q+LKRA++SDPT+L  + S
Sbjct: 17  PLTLTTNRTIT-HVSVRCGPRDNRGPLVKGRVLSIEAIQAVQALKRAQRSDPTELPTLAS 76

Query: 77  TTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGVDLGMYAEVAAALSRNGAMEE 136
            TLSRL+KADLVA L+ELLRQ++C LAL+VF+  RSEY  DL +YAE+A AL+RNG  E+
Sbjct: 77  KTLSRLIKADLVAALRELLRQEQCHLALQVFSTFRSEYPPDLSVYAEMALALARNGMAED 136

Query: 137 IDRLVCDLEDEDRVIQCDDKGLIKLIKAVIGGDRRESTVRIYRMMKRSGWGST-IKADDY 196
           +D L+C LE E  V    DKGLI+LI+AV+  DRRESTV+IY M+KR+GWGS+  KAD+Y
Sbjct: 137 MDGLICVLEKESGVQWDSDKGLIRLIRAVVTADRRESTVKIYEMLKRNGWGSSDFKADEY 196

Query: 197 MVRVLSKGLRRLGEMEMADE 216
           MVRVLSKGLRRLGE+ +ADE
Sbjct: 197 MVRVLSKGLRRLGEVGLADE 215

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BLAST of CmaCh17G007900 vs. TrEMBL
Match: W9R688_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026238 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 3.2e-59
Identity = 129/214 (60.28%), Postives = 161/214 (75.23%), Query Frame = 1


Query: 9   FLKSQIPIPIPISATATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQSLKRAEKSDP 68
           FLK+ +PIP P + TA      P+RCGPRDNRGPLVKGR LS EAIQA+Q+LKRA +SDP
Sbjct: 12  FLKTPLPIPKPNTTTAITSSYAPIRCGPRDNRGPLVKGRILSIEAIQAVQALKRAHRSDP 71

Query: 69  TKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGVDLGMYAEVAAAL 128
           + L  V S TLSRL+K+DL+A LKELLRQD CALAL VF+ VRSEY  DL +YA++  AL
Sbjct: 72  STLPTVASKTLSRLIKSDLLAALKELLRQDHCALALHVFSAVRSEYRPDLSLYADMVIAL 131

Query: 129 SRNGAMEEIDRLVCDLEDED-RVIQCDDKGLIKLIKAVIGGDRRESTVRIYRMMKRSGWG 188
            +NG  E+IDRL+ DLE E    +  D+KGLI+L++AVI  +RRESTVRIY M+K    G
Sbjct: 132 EKNGMAEDIDRLIFDLEMEGCGAVGDDNKGLIRLVRAVIAAERRESTVRIYGMLKMGVLG 191

Query: 189 ST-IKADDYMVRVLSKGLRRLGEMEMADEINMQF 221
           S+  +ADD+ V  LSKGLRRLGE  +ADE++ +F
Sbjct: 192 SSGFEADDHTVGALSKGLRRLGEAALADEVDREF 225

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BLAST of CmaCh17G007900 vs. TrEMBL
Match: K4BMK0_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 3.3e-56
Identity = 118/222 (53.15%), Postives = 163/222 (73.42%), Query Frame = 1


Query: 1   MAFSLHSTFLKSQIPIPIPISATATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQSL 60
           ++ +L  T   S + +P P S T      + VRCGPR NRGPLVKGR LS EAIQAIQ+L
Sbjct: 5   LSTNLKFTLQHSSVTLPPPKSTTRR---KISVRCGPRSNRGPLVKGRILSIEAIQAIQAL 64

Query: 61  KRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGV-DLG 120
           KRA+++DP+++E  +S TL+RL+K DL+A  KELLRQD C LAL+VF  V+SE  V DLG
Sbjct: 65  KRAQRTDPSQIEAQVSKTLNRLIKTDLIAAYKELLRQDLCDLALKVFPAVQSECDVPDLG 124

Query: 121 MYAEVAAALSRNGAMEEIDRLVCDLEDEDRVIQCDDKGLIKLIKAVIGGDRRESTVRIYR 180
           +YA++  AL+R G  E ID L+CDLE   R I+CDDK L++L++A++ G++ ESTVR+Y 
Sbjct: 125 LYADMVLALTRTGFAEPIDELICDLEKVGR-IECDDKSLVRLVRALVEGEQVESTVRVYE 184

Query: 181 MMKRSGWGSTIKADDYMVRVLSKGLRRLGEMEMADEINMQFQ 222
           +MK+SGWGS  + D+Y+ +VL +G +R G+ EMADE++ Q Q
Sbjct: 185 LMKKSGWGSRFEIDEYVAKVLRRGFKRFGKEEMADEVDQQLQ 222

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BLAST of CmaCh17G007900 vs. TAIR10
Match: AT3G27750.1 (AT3G27750.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 188.0 bits (476), Expect = 6.6e-48
Identity = 112/228 (49.12%), Postives = 160/228 (70.18%), Query Frame = 1


Query: 1   MAFSLHSTFLKSQIPIPIPISATATVVVS----LPVRCGPRDNRGPLVKGRTLSTEAIQA 60
           MA SL  T      P  +  S T +V+V     + +RCGPRDNRGPL+KGR LSTEAIQ+
Sbjct: 1   MALSLSQTR-----PPSLSHSHTLSVIVPKRTFVSIRCGPRDNRGPLLKGRILSTEAIQS 60

Query: 61  IQSLKRAEKSDPTKLEQVLSTT---LSRLLKADLVATLKELLRQDRCALALEVFAVVRSE 120
           IQSLKRA ++  +     LS T   L RL+K+DL++ L+ELLRQD C LA+ V + +R+E
Sbjct: 61  IQSLKRAHRTGVS-----LSLTLRPLRRLIKSDLISVLRELLRQDYCTLAVHVLSTLRTE 120

Query: 121 Y-GVDLGMYAEVAAALSRNGAMEEIDRLVCDLEDEDRVIQCDDKGLIKLIKAVIGGDRRE 180
           Y  +DL +YA++  AL+RN   +EIDRL+ +++  D+  + DDK L KLI+AV+G +RRE
Sbjct: 121 YPPLDLVLYADIVNALTRNKEFDEIDRLIGEIDGIDQ--RSDDKALAKLIRAVVGAERRE 180

Query: 181 STVRIYRMMKRSGWGS-TIKADDYMVRVLSKGLRRLGEMEMADEINMQ 220
           S VR+Y +M+ SGWGS + +AD+Y+  VLSKGL RLGE ++A +++++
Sbjct: 181 SVVRVYTLMRESGWGSESWEADEYVAEVLSKGLLRLGEPDLASQVSLK 216

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BLAST of CmaCh17G007900 vs. TAIR10
Match: AT5G09320.1 (AT5G09320.1 Vacuolar sorting protein 9 (VPS9) domain)

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-17
Identity = 65/203 (32.02%), Postives = 103/203 (50.74%), Query Frame = 1


Query: 39  NRGPLVKGRTLSTEAIQAIQSLKRAE--------------KSDPTKLEQVLSTTLSRLLK 98
           NR PL +GR LS EAIQA+Q+LKRA                S    L++V+ +   RLLK
Sbjct: 495 NRKPLQRGRMLSIEAIQAVQALKRANPLLPPPPVPSTSTTSSSSALLDRVIISKFRRLLK 554

Query: 99  ADLVATLKELLRQDRCALALEVFAVVRSEYGV--DLGMYAEVAAALSRNGAMEEIDRLVC 158
            D+VA L+ELLRQ+ C+LAL+VF  +R EY     + MY ++   ++ N  MEE++ L  
Sbjct: 555 FDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMADNSLMEEVNYLYS 614

Query: 159 DLEDEDRVIQCDDKGLIKLIKAVIGGDRRESTVRIYRMMKRSGWGSTIKADDYMVRVLSK 218
            ++ E + +  + +    L+  ++     +  +  Y  M+  G+    + D    RVL  
Sbjct: 615 AMKSE-KGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGY----EPDRASFRVLVL 674

Query: 219 GLRRLGEMEMADEINMQFQDLVG 226
           GL   GEM ++  +     +  G
Sbjct: 675 GLESNGEMGLSAIVRQDAHEYYG 692

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BLAST of CmaCh17G007900 vs. TAIR10
Match: AT3G46870.1 (AT3G46870.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-10
Identity = 55/187 (29.41%), Postives = 100/187 (53.48%), Query Frame = 1


Query: 40  RGPLVKGRTL-STEAIQAIQSLKRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQD 99
           RGPL +G+ L   EA+  I  LKR  K D  KL++ + T + RLLK D++A + EL RQ+
Sbjct: 63  RGPLWRGKKLIGKEALFVILGLKRL-KEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQE 122

Query: 100 RCALALEVFAVVRSE--YGVDLGMYAEVAAALSRNGAMEEIDRLVCDLEDEDRVIQCDDK 159
             ALA+++F V++ +  Y  D+ MY ++  +L+++  M+E   L   ++ E+  +  D +
Sbjct: 123 ETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKEN--LFPDSQ 182

Query: 160 GLIKLIKAVIGGDRRESTVRIYRMMKRSGWGSTIKADDYMVRVLSKGLRRLGEMEMADEI 219
              ++I+  +        + +Y  M +    S    ++   RVL KGL  L    + +++
Sbjct: 183 TYTEVIRGFLRDGCPADAMNVYEDMLK----SPDPPEELPFRVLLKGL--LPHPLLRNKV 240

Query: 220 NMQFQDL 224
              F++L
Sbjct: 243 KKDFEEL 240

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BLAST of CmaCh17G007900 vs. TAIR10
Match: AT1G62350.1 (AT1G62350.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 56.6 bits (135), Expect = 2.3e-08
Identity = 40/138 (28.99%), Postives = 77/138 (55.80%), Query Frame = 1


Query: 49  LSTEAIQAIQSLKRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFA 108
           +S E + A + LKR + +   +L++ + + +SRLLK+DLV+ L E  RQ++  L ++++ 
Sbjct: 1   MSKEGLIAAKELKRLQ-TQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYE 60

Query: 109 VVRSE--YGVDLGMYAEVAAALSRNGAMEEIDRLVCDLEDEDRVIQCDDKGLIKLIKAVI 168
           VVR E  Y  D+  Y ++   L+RN  ++E  ++  DL+ E+  +  D      L++  +
Sbjct: 61  VVRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEE--VLFDQHTFGDLVRGFL 120

Query: 169 GGDRRESTVRIYRMMKRS 185
             +     +R+Y  M+ S
Sbjct: 121 DNELPLEAMRLYGEMRES 135

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BLAST of CmaCh17G007900 vs. NCBI nr
Match: gi|659124462|ref|XP_008462172.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Cucumis melo])

HSP 1 Score: 352.4 bits (903), Expect = 5.7e-94
Identity = 189/229 (82.53%), Postives = 207/229 (90.39%), Query Frame = 1


Query: 1   MAFSLHSTFLKSQIPIPIPIS-ATATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQS 60
           MA SLHSTFLKSQI IPIP S ATA V VS  VRCGPRDNRGPLVKGRTLS EAIQAIQS
Sbjct: 28  MASSLHSTFLKSQISIPIPTSTATAAVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQS 87

Query: 61  LKRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGVDLG 120
           LKRAE+SDPTKL+QVLSTTLSRLLKADLVATLKELLRQ+RCALALEVFAV+RSEY  +LG
Sbjct: 88  LKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIRSEYRAELG 147

Query: 121 MYAEVAAALSRNGAMEEIDRLVCDLEDEDRVIQC--DDKGLIKLIKAVIGGDRRESTVRI 180
           +YAEVAAALSRNGA EEIDRLVCDL+  D VI+   DDKGLIKLIKAVI G+RRESTVRI
Sbjct: 148 LYAEVAAALSRNGAAEEIDRLVCDLDGRDGVIEWGDDDKGLIKLIKAVISGNRRESTVRI 207

Query: 181 YRMMKRSGWGSTIKADDYMVRVLSKGLRRLGEMEMADEINMQFQDLVGS 227
           YRMM+R+GWGS IK DDYM++V+SKGLRR+GE+E+ADEIN +FQDLVGS
Sbjct: 208 YRMMRRNGWGSMIKGDDYMIKVMSKGLRRVGEIELADEINREFQDLVGS 256

[Close]

BLAST of CmaCh17G007900 vs. NCBI nr
Match: gi|449448168|ref|XP_004141838.1| (PREDICTED: uncharacterized protein LOC101217831 [Cucumis sativus])

HSP 1 Score: 349.4 bits (895), Expect = 4.9e-93
Identity = 189/230 (82.17%), Postives = 207/230 (90.00%), Query Frame = 1


Query: 1   MAFSLHSTFLKSQIPIPIPIS-ATATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQS 60
           MA SLHSTFLKSQI IPIP S AT+ V VS  VRCGPRDNRGPLVKGRTLS EAIQAIQS
Sbjct: 1   MASSLHSTFLKSQISIPIPASTATSPVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQS 60

Query: 61  LKRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGVDLG 120
           LKRAE+SDPTKL+QVLSTTLSRLLKADLVATLKELLRQ+RCALALEVFAV++SEY  +LG
Sbjct: 61  LKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIKSEYRAELG 120

Query: 121 MYAEVAAALSRNGAMEEIDRLVCDLEDEDRVIQC--DDKGLIKLIKAVIGGDRRESTVRI 180
           +YAEVAAALSRNGA EEIDRLV DL+  D VI+   DDKGLIKLIKAVI G+RRESTVRI
Sbjct: 121 LYAEVAAALSRNGAAEEIDRLVSDLDGGDGVIEWGDDDKGLIKLIKAVISGNRRESTVRI 180

Query: 181 YRMMKRSGWGSTIKADDYMVRVLSKGLRRLGEMEMADEINMQFQDLVGSF 228
           YRMM+R GWGS IKADDYM++VLSKGLRRLGE+E+ADEIN +F+DLVGSF
Sbjct: 181 YRMMRRKGWGSMIKADDYMIKVLSKGLRRLGEIELADEINREFEDLVGSF 230

[Close]

BLAST of CmaCh17G007900 vs. NCBI nr
Match: gi|1009112149|ref|XP_015866768.1| (PREDICTED: uncharacterized protein LOC107404331 [Ziziphus jujuba])

HSP 1 Score: 261.5 bits (667), Expect = 1.3e-66
Identity = 141/224 (62.95%), Postives = 180/224 (80.36%), Query Frame = 1


Query: 1   MAFSLH---STFLKSQIPIPIPISATATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAI 60
           MA SLH   +TFLK+ +P     ++TA+  +   +RCGPRDNRGPLVKGR LS EAIQA+
Sbjct: 1   MATSLHPNPTTFLKTHLPKSNLNNSTASRFL---IRCGPRDNRGPLVKGRVLSIEAIQAV 60

Query: 61  QSLKRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGVD 120
           QSLKRA++SDPT +  ++S TLSRL+KADLVATLKELLRQD+CALAL VF+ +RSE+   
Sbjct: 61  QSLKRAQRSDPTNISTLVSKTLSRLIKADLVATLKELLRQDQCALALHVFSNLRSEHEPG 120

Query: 121 LGMYAEVAAALSRNGAMEEIDRLVCDLEDEDRVIQCDDKGLIKLIKAVIGGDRRESTVRI 180
           L +YA++  AL++NG  EEIDRL+ DLE E   I CDDKGLI+LI+AV+G +RRESTVRI
Sbjct: 121 LSLYADLVMALAKNGMAEEIDRLIFDLEKEGGGIPCDDKGLIRLIRAVVGAERRESTVRI 180

Query: 181 YRMMKRSGWGST-IKADDYMVRVLSKGLRRLGEMEMADEINMQF 221
           Y MMKRSGWGS+  KAD+YMV+ LS+GLRR+GE+ +ADE++ +F
Sbjct: 181 YGMMKRSGWGSSGFKADEYMVKALSRGLRRVGEVGLADEVDKEF 221

[Close]

BLAST of CmaCh17G007900 vs. NCBI nr
Match: gi|658014676|ref|XP_008342662.1| (PREDICTED: uncharacterized protein LOC103405437 [Malus domestica])

HSP 1 Score: 260.4 bits (664), Expect = 3.0e-66
Identity = 139/225 (61.78%), Postives = 177/225 (78.67%), Query Frame = 1


Query: 1   MAFSLHSTFLKSQIPIPIPISATATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQSL 60
           MA SLH+       P P+  + T +    + +RCGPRDNRGPLVKGR LS EAIQA+Q+L
Sbjct: 1   MASSLHTNATHFLSPKPVAQTPTRSTT-RVSIRCGPRDNRGPLVKGRVLSIEAIQAVQTL 60

Query: 61  KRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGVDLGM 120
           KRA++SDP +   ++S TLSRL+KADLVA L+ELLRQD+C LAL+VF+ VRSEY  DL +
Sbjct: 61  KRAQRSDPAQFPALVSKTLSRLIKADLVAALRELLRQDQCHLALQVFSAVRSEYPPDLSV 120

Query: 121 YAEVAAALSRNGAMEEIDRLVCDLEDEDRVIQCDDKGLIKLIKAVIGGDRRESTVRIYRM 180
           YAE+A AL+RN   E++DRL+CDLE E  V    DKGLI+LI+AVIG DRRESTVRIY+M
Sbjct: 121 YAEMALALARNEMGEDMDRLICDLETESGVQWGSDKGLIRLIRAVIGADRRESTVRIYKM 180

Query: 181 MKRSGWGST-IKADDYMVRVLSKGLRRLGEMEMADEINMQFQDLV 225
           +KR+GWGST  +AD+YMVRVLSKGLRRLGE+ +ADE++++F  L+
Sbjct: 181 LKRNGWGSTGFEADEYMVRVLSKGLRRLGEVGLADEVDLKFGSLL 224

[Close]

BLAST of CmaCh17G007900 vs. NCBI nr
Match: gi|645244561|ref|XP_008228478.1| (PREDICTED: uncharacterized protein LOC103327886 [Prunus mume])

HSP 1 Score: 255.4 bits (651), Expect = 9.5e-65
Identity = 141/224 (62.95%), Postives = 176/224 (78.57%), Query Frame = 1


Query: 1   MAFSLHST---FLKSQIPIPIPISATATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAI 60
           MA SLH     FLK + P+ +  + T T V    VRCGPRDNRGPLVKGR LS EAIQA+
Sbjct: 1   MASSLHPNPTHFLKLK-PLTLTTNRTVTHV---SVRCGPRDNRGPLVKGRVLSIEAIQAV 60

Query: 61  QSLKRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGVD 120
           Q+LKRA++SDPT+L  + S TLSRL+KADLVA L+ELLRQ++C LAL+VF+  RSEY  D
Sbjct: 61  QALKRAQRSDPTQLPTLASKTLSRLIKADLVAALRELLRQEQCHLALQVFSTFRSEYPPD 120

Query: 121 LGMYAEVAAALSRNGAMEEIDRLVCDLEDEDRVIQCDDKGLIKLIKAVIGGDRRESTVRI 180
           L +YAE+A AL+RNG  E++DRL+C LE E  V    DKGLI+LI+AV+  DRRESTV+I
Sbjct: 121 LSVYAEMALALARNGMAEDMDRLICVLEKESGVPWDSDKGLIRLIRAVVSADRRESTVKI 180

Query: 181 YRMMKRSGWGST-IKADDYMVRVLSKGLRRLGEMEMADEINMQF 221
           Y M+KR+GWGS+  KAD+YMVRVLSKGLRRLGE+ +ADE++M+F
Sbjct: 181 YEMLKRNGWGSSDFKADEYMVRVLSKGLRRLGEVGLADEVDMKF 220

The following BLAST results are available for this feature:

BLAST of CmaCh17G007900 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP266_ARATH	4.3e-09	29.41	Pentatricopeptide repeat-containing protein At3g46870 OS=Arabidopsis thaliana GN...	[more]
PPR89_ARATH	4.1e-07	28.99	Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana GN...	[more]

BLAST of CmaCh17G007900 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6N6_CUCSA	3.4e-93	82.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G447050 PE=4 SV=1	[more]
D7U0G1_VITVI	1.5e-61	60.73	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g04100 PE=4 SV=...	[more]
M5WV79_PRUPE	4.5e-61	64.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011224mg PE=4 SV=1	[more]
W9R688_9ROSA	3.2e-59	60.28	Uncharacterized protein OS=Morus notabilis GN=L484_026238 PE=4 SV=1	[more]
K4BMK0_SOLLC	3.3e-56	53.15	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]

BLAST of CmaCh17G007900 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G27750.1	6.6e-48	49.12	FUNCTIONS IN: molecular_function unknown	[more]
AT5G09320.1	1.2e-17	32.02	Vacuolar sorting protein 9 (VPS9) domain	[more]
AT3G46870.1	2.4e-10	29.41	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G62350.1	2.3e-08	28.99	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of CmaCh17G007900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659124462\|ref\|XP_008462172.1\|	5.7e-94	82.53	PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Cucumis melo]	[more]
gi\|449448168\|ref\|XP_004141838.1\|	4.9e-93	82.17	PREDICTED: uncharacterized protein LOC101217831 [Cucumis sativus]	[more]
gi\|1009112149\|ref\|XP_015866768.1\|	1.3e-66	62.95	PREDICTED: uncharacterized protein LOC107404331 [Ziziphus jujuba]	[more]
gi\|658014676\|ref\|XP_008342662.1\|	3.0e-66	61.78	PREDICTED: uncharacterized protein LOC103405437 [Malus domestica]	[more]
gi\|645244561\|ref\|XP_008228478.1\|	9.5e-65	62.95	PREDICTED: uncharacterized protein LOC103327886 [Prunus mume]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0000373	Group II intron splicing
biological_process	GO:0009987	cellular process
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G007900.1	CmaCh17G007900.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh17G007900	Cucsa.359300	Cucumber (Gy14) v1	cgycmaB0984
CmaCh17G007900	Cla015459	Watermelon (97103) v1	cmawmB328
CmaCh17G007900	Csa7G447050	Cucumber (Chinese Long) v2	cmacuB388
CmaCh17G007900	MELO3C024259	Melon (DHL92) v3.5.1	cmameB326
CmaCh17G007900	ClCG09G001870	Watermelon (Charleston Gray)	cmawcgB306
CmaCh17G007900	CSPI07G21570	Wild cucumber (PI 183967)	cmacpiB392
CmaCh17G007900	CmoCh17G007570	Cucurbita moschata (Rifu)	cmacmoB353
CmaCh17G007900	Lsi02G028110	Bottle gourd (USVL1VR-Ls)	cmalsiB348
CmaCh17G007900	Cp4.1LG12g08290	Cucurbita pepo (Zucchini)	cmacpeB371
CmaCh17G007900	MELO3C024259.2	Melon (DHL92) v3.6.1	cmamedB379
CmaCh17G007900	CsaV3_7G033470	Cucumber (Chinese Long) v3	cmacucB0462
CmaCh17G007900	Cla97C09G163990	Watermelon (97103) v2	cmawmbB387
CmaCh17G007900	Bhi09G000148	Wax gourd	cmawgoB0492
CmaCh17G007900	Carg09512	Silver-seed gourd	carcmaB1419

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh17G007900	Cucurbita maxima (Rimu)	cmacmaB097
CmaCh17G007900	Cucurbita maxima (Rimu)	cmacmaB137
CmaCh17G007900	Cucurbita maxima (Rimu)	cmacmaB245
CmaCh17G007900	Cucurbita maxima (Rimu)	cmacmaB360
CmaCh17G007900	Cucurbita maxima (Rimu)	cmacmaB383
CmaCh17G007900	Cucurbita moschata (Rifu)	cmacmoB349
CmaCh17G007900	Cucurbita moschata (Rifu)	cmacmoB355
CmaCh17G007900	Cucurbita moschata (Rifu)	cmacmoB375
CmaCh17G007900	Wild cucumber (PI 183967)	cmacpiB364
CmaCh17G007900	Cucumber (Chinese Long) v2	cmacuB360
CmaCh17G007900	Melon (DHL92) v3.5.1	cmameB332
CmaCh17G007900	Watermelon (Charleston Gray)	cmawcgB332
CmaCh17G007900	Watermelon (97103) v1	cmawmB339
CmaCh17G007900	Watermelon (97103) v1	cmawmB361
CmaCh17G007900	Cucurbita pepo (Zucchini)	cmacpeB399
CmaCh17G007900	Cucurbita pepo (Zucchini)	cmacpeB376
CmaCh17G007900	Cucurbita pepo (Zucchini)	cmacpeB400
CmaCh17G007900	Bottle gourd (USVL1VR-Ls)	cmalsiB361
CmaCh17G007900	Cucumber (Gy14) v2	cgybcmaB346
CmaCh17G007900	Cucumber (Gy14) v2	cgybcmaB925
CmaCh17G007900	Melon (DHL92) v3.6.1	cmamedB386
CmaCh17G007900	Silver-seed gourd	carcmaB0155
CmaCh17G007900	Silver-seed gourd	carcmaB0277
CmaCh17G007900	Silver-seed gourd	carcmaB1044
CmaCh17G007900	Cucumber (Chinese Long) v3	cmacucB0427
CmaCh17G007900	Watermelon (97103) v2	cmawmbB379
CmaCh17G007900	Watermelon (97103) v2	cmawmbB382
CmaCh17G007900	Wax gourd	cmawgoB0474