Cp4.1LG12g08050 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g08050
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description30S ribosomal protein S17
LocationCp4.1LG12 : 6525896 .. 6526378 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGCAACTCTGAGTCCCTCATCCTTTCTGCAAATTCCTCCATTGCAGAGGCTGAAGAACCTCTCAGTTTCCACTTCCTTCCTCCATGGCTCAGTTCCTCTGTCATTCCTCTCTAAGCCTTCGCCCTCGCTATCGGCCTCCCAAACCCCCAATTTCCTCCCCTCGATTAAGGCCATGAGGTCGCTGCAAGGCCGTGTGGTCTGCGCTACCAACGACAAGACCGTCGCCGTCGAGGTCGTGCGATTGGCGCCTCATCCGAAATACAAACGGCGCATTAGAATCAAGAAGAAGTACCAGGCGCACGATCCAGATAACAAATTCAAGGTCGGAGACTTTGTGGAGCTTGAAAAATGCCGGCCGATCAGCAAGATGAAGACGTTCCTGGCCATTCCGGTTCCGGCGAGGAATTCGAAGCCGAAAGCGGCGGAAGCCGGTGCTGGAGAGCTCGGGATTCCACTGGAGTCGCAGCAACAGGTTTAA

mRNA sequence

ATGTCTGCAACTCTGAGTCCCTCATCCTTTCTGCAAATTCCTCCATTGCAGAGGCTGAAGAACCTCTCAGTTTCCACTTCCTTCCTCCATGGCTCAGTTCCTCTGTCATTCCTCTCTAAGCCTTCGCCCTCGCTATCGGCCTCCCAAACCCCCAATTTCCTCCCCTCGATTAAGGCCATGAGGTCGCTGCAAGGCCGTGTGGTCTGCGCTACCAACGACAAGACCGTCGCCGTCGAGGTCGTGCGATTGGCGCCTCATCCGAAATACAAACGGCGCATTAGAATCAAGAAGAAGTACCAGGCGCACGATCCAGATAACAAATTCAAGGTCGGAGACTTTGTGGAGCTTGAAAAATGCCGGCCGATCAGCAAGATGAAGACGTTCCTGGCCATTCCGGTTCCGGCGAGGAATTCGAAGCCGAAAGCGGCGGAAGCCGGTGCTGGAGAGCTCGGGATTCCACTGGAGTCGCAGCAACAGGTTTAA

Coding sequence (CDS)

ATGTCTGCAACTCTGAGTCCCTCATCCTTTCTGCAAATTCCTCCATTGCAGAGGCTGAAGAACCTCTCAGTTTCCACTTCCTTCCTCCATGGCTCAGTTCCTCTGTCATTCCTCTCTAAGCCTTCGCCCTCGCTATCGGCCTCCCAAACCCCCAATTTCCTCCCCTCGATTAAGGCCATGAGGTCGCTGCAAGGCCGTGTGGTCTGCGCTACCAACGACAAGACCGTCGCCGTCGAGGTCGTGCGATTGGCGCCTCATCCGAAATACAAACGGCGCATTAGAATCAAGAAGAAGTACCAGGCGCACGATCCAGATAACAAATTCAAGGTCGGAGACTTTGTGGAGCTTGAAAAATGCCGGCCGATCAGCAAGATGAAGACGTTCCTGGCCATTCCGGTTCCGGCGAGGAATTCGAAGCCGAAAGCGGCGGAAGCCGGTGCTGGAGAGCTCGGGATTCCACTGGAGTCGCAGCAACAGGTTTAA

Protein sequence

MSATLSPSSFLQIPPLQRLKNLSVSTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQQQV
Homology
[Close]
BLAST of Cp4.1LG12g08050 vs. Swiss-Prot
Match: RR17_ARATH (30S ribosomal protein S17, chloroplastic OS=Arabidopsis thaliana GN=RPS17 PE=1 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.6e-42
Identity = 94/141 (66.67%), Postives = 114/141 (80.85%), Query Frame = 1 

Query: 19  LKNLSVSTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAV 78
           L+ L +S+ F HGS PLS LSKP+ S    + P  +P I+AM+++QGRVVCAT+DKTVAV
Sbjct: 10  LQALKLSSPFAHGSTPLSSLSKPN-SFPNHRMPALVPVIRAMKTMQGRVVCATSDKTVAV 69

Query: 79  EVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNS 138
           EVVRLAPHPKYKRR+R+KKKYQAHDPDN+FKVGD V LEK RPISK K+F+A+PV AR +
Sbjct: 70  EVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKSRPISKTKSFVALPVIARAA 129

Query: 139 KPKAAEAGAGE-LGIPLESQQ 159
             + AEAG  E LG+PLESQQ
Sbjct: 130 --RKAEAGGDELLGLPLESQQ 147

[Close]
BLAST of Cp4.1LG12g08050 vs. Swiss-Prot
Match: RR17_PEA (30S ribosomal protein S17, chloroplastic (Fragment) OS=Pisum sativum GN=RPS17 PE=2 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.8e-34
Identity = 77/134 (57.46%), Postives = 98/134 (73.13%), Query Frame = 1 

Query: 28  FLHGSVPLSFLSKP--SPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAP 87
           F    + L+  S P  SP           P+IKAM++++G+VVCA+ +KTVAVEV RLAP
Sbjct: 4   FTGNGIGLNRFSNPISSPQTQTQTRSLPFPAIKAMKTMEGKVVCASGNKTVAVEVTRLAP 63

Query: 88  HPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNSKPKAAEA 147
           HPKY++RIR+KKKYQAHDP+N FKVGD V+L K RPISK KTFLA+P P+R SK   +  
Sbjct: 64  HPKYQKRIRLKKKYQAHDPENDFKVGDIVQLLKTRPISKKKTFLAVPAPSRKSKKAGS-- 123

Query: 148 GAGELGIPLESQQQ 160
            +GELGIPL+SQQ+
Sbjct: 124 -SGELGIPLQSQQE 134

[Close]
BLAST of Cp4.1LG12g08050 vs. Swiss-Prot
Match: RR17_MAIZE (30S ribosomal protein S17, chloroplastic OS=Zea mays GN=RPS17 PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.1e-27
Identity = 70/111 (63.06%), Postives = 80/111 (72.07%), Query Frame = 1 

Query: 32  SVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKR 91
           S P   +S P P LS+      L  I+A R L GRVV    DKTV VEVVRLAPHPKYKR
Sbjct: 5   SSPFVSVSPPPPPLSSHGARPAL-RIEAARQLTGRVVTTKADKTVGVEVVRLAPHPKYKR 64

Query: 92  RIRIKKKYQAHDPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNSKPKA 143
           R RIKKKYQAHDPDN+FKVGD VEL+  RPISK K FLAIP+P R+++ K+
Sbjct: 65  RERIKKKYQAHDPDNQFKVGDVVELQPSRPISKTKHFLAIPLPPRDTRRKS 114

[Close]
BLAST of Cp4.1LG12g08050 vs. Swiss-Prot
Match: RR17_ORYSJ (30S ribosomal protein S17, chloroplastic OS=Oryza sativa subsp. japonica GN=RPS17 PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.5e-27
Identity = 66/103 (64.08%), Postives = 78/103 (75.73%), Query Frame = 1 

Query: 57  IKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVEL 116
           I+A + L GRVV    DKTV VEVVRLAPHPKYKRR RIKKKYQAHDPDN+FKVGD VEL
Sbjct: 34  IQAAKQLTGRVVTTKADKTVGVEVVRLAPHPKYKRRERIKKKYQAHDPDNQFKVGDVVEL 93

Query: 117 EKCRPISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQQQ 160
            + RPISK K FLA+P+P R+++ K+      +L  PL+SQ Q
Sbjct: 94  RRSRPISKTKHFLAVPLPPRDTRRKS------QLLPPLQSQSQ 130

[Close]
BLAST of Cp4.1LG12g08050 vs. Swiss-Prot
Match: RS17_RHOSK (30S ribosomal protein S17 OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.5e-13
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 1 

Query: 61  RSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCR 120
           R LQG V    N++TV V V R   HP  K+ +R+ KKY+AHDP+N+FKVGD V +E+C 
Sbjct: 4   RILQGTVTSDKNEQTVTVLVERRFKHPLLKKTVRLSKKYRAHDPENQFKVGDIVRIEECA 63

Query: 121 PISKMKTFLAI 132
           PISK K +  +
Sbjct: 64  PISKTKRWKVV 74

[Close]
BLAST of Cp4.1LG12g08050 vs. TrEMBL
Match: A0A0A0K952_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G446990 PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 4.2e-66
Identity = 138/162 (85.19%), Postives = 146/162 (90.12%), Query Frame = 1 

Query: 1   MSATLSPSSFLQIPPLQRLKNLSVSTSFLHGSVPLSFLSKPSPSLSA--SQTPNFLPSIK 60
           MS TL+ SS LQIPP+Q LK LS+S+SFLHGS PLSFLSKPS S S   SQTPNFLPSI+
Sbjct: 1   MSITLTSSSLLQIPPVQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPFPSQTPNFLPSIR 60

Query: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEK 120
           AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDN+F+VGDFVELEK
Sbjct: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFQVGDFVELEK 120

Query: 121 CRPISKMKTFLAIPVPARNSKPKAAEAG-AGELGIPLESQQQ 160
           CRPISKMKTFLAIPVPARNSK KA E G  GELGIPLESQQ+
Sbjct: 121 CRPISKMKTFLAIPVPARNSKKKAVEGGEGGELGIPLESQQE 162

[Close]
BLAST of Cp4.1LG12g08050 vs. TrEMBL
Match: W9RUW3_9ROSA (30S ribosomal protein S17 OS=Morus notabilis GN=L484_026214 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 6.6e-51
Identity = 110/160 (68.75%), Postives = 129/160 (80.62%), Query Frame = 1 

Query: 8   SSFLQIPPLQRLK-------NLSVSTSFLHGSVPLSFLSKPSPSLS--ASQTPNFLPSIK 67
           +S L +PPL  LK         + +T FLHGS+PLS LSKPS SL+   S  PNFLP I+
Sbjct: 5   ASLLHLPPLHSLKLSSSTTPTTTTTTHFLHGSIPLSLLSKPSSSLTNPTSCPPNFLPPIR 64

Query: 68  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEK 127
           AMRSLQGRVVCAT+DKTVAVEV+RLAPHPKYKRR+R KKK+QAHDPDN+FKVGD+V+LEK
Sbjct: 65  AMRSLQGRVVCATSDKTVAVEVLRLAPHPKYKRRVRKKKKFQAHDPDNQFKVGDYVQLEK 124

Query: 128 CRPISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQQ 159
            RPISK KTF+A+PVPARNS+ K A+  + ELGIPLESQQ
Sbjct: 125 SRPISKTKTFVAVPVPARNSRKKDADGESAELGIPLESQQ 164

[Close]
BLAST of Cp4.1LG12g08050 vs. TrEMBL
Match: D7U0I2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g04330 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.7e-46
Identity = 104/147 (70.75%), Postives = 120/147 (81.63%), Query Frame = 1 

Query: 14  PPLQRLKNLSVSTSFLHGSVPLSFLSKPSPSLSASQTP--NFLPSIKAMRSLQGRVVCAT 73
           P +  L++L ++T FLHGS  LS LSKPS +  AS  P   FLP I+AM+S+QGRVVCAT
Sbjct: 43  PAMSLLQSLKLTTPFLHGSSNLSLLSKPSSTSLASPPPPPTFLPPIRAMKSMQGRVVCAT 102

Query: 74  NDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPISKMKTFLAI 133
           +DKTVAVEVVRLAPHPKYKRR+R KKKYQAHDPDN+FKVGD V+LEK RPISK KTF+AI
Sbjct: 103 SDKTVAVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDVVQLEKSRPISKTKTFVAI 162

Query: 134 PVPARNSKPKAAEAGAGELGIPLESQQ 159
           PVP RN + K+ EA AGEL IPLESQQ
Sbjct: 163 PVPNRN-RAKSQEAAAGELEIPLESQQ 188

[Close]
BLAST of Cp4.1LG12g08050 vs. TrEMBL
Match: A0A061GAC0_THECC (Ribosomal protein S17 OS=Theobroma cacao GN=TCM_028766 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 8.3e-46
Identity = 98/142 (69.01%), Postives = 120/142 (84.51%), Query Frame = 1 

Query: 19  LKNLSVSTSFLHGSVPLSFLSKPSPSLSAS--QTPNFLPSIKAMRSLQGRVVCATNDKTV 78
           L++L +S+ FLHGS  LS LSKP+ SLS    +TP FLP I+A++SLQG+VVCATNDKTV
Sbjct: 7   LQSLKLSSPFLHGSTSLSLLSKPNSSLSHQPLKTPTFLPPIRALKSLQGKVVCATNDKTV 66

Query: 79  AVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPISKMKTFLAIPVPAR 138
           +VEVVRLAPHPKYKRR+R KKK+QAHDPDN+FKVGD+V+LEK RPISK KTF+A+PVP++
Sbjct: 67  SVEVVRLAPHPKYKRRVRKKKKFQAHDPDNQFKVGDYVQLEKSRPISKTKTFIAVPVPSK 126

Query: 139 NSKPKAAEAGAGELGIPLESQQ 159
           N + +  E   GELGIPLESQQ
Sbjct: 127 NGRQEKKE--TGELGIPLESQQ 146

[Close]
BLAST of Cp4.1LG12g08050 vs. TrEMBL
Match: A0A068TRN2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021991001 PE=3 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.8e-45
Identity = 109/161 (67.70%), Postives = 127/161 (78.88%), Query Frame = 1 

Query: 1   MSATLSPSSFLQIPPLQRLKNLSVSTSFLHGSVPLSFLSKPSPSLSASQTP--NFLPSIK 60
           MSAT   S+ LQ+P L + K+L++ST FLHGS P+S LSKPS SLS ++T     LP I+
Sbjct: 1   MSAT---SAILQLP-LSQFKSLTLSTPFLHGSTPISLLSKPSSSLSNARTSPLTVLPPIR 60

Query: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEK 120
           AM+S+QGRVVCAT+DKTVAVEV RLAPHPKYKRR+R KKKYQAHDP N+FKVGDFV+LEK
Sbjct: 61  AMKSMQGRVVCATSDKTVAVEVTRLAPHPKYKRRVRKKKKYQAHDPLNQFKVGDFVQLEK 120

Query: 121 CRPISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQQQ 160
            RPISK KTFLA+PV  RN  PKA E    ELG+ LES QQ
Sbjct: 121 GRPISKTKTFLAVPVVGRN-VPKAKELVPQELGLKLESDQQ 156

[Close]
BLAST of Cp4.1LG12g08050 vs. TAIR10
Match: AT1G79850.1 (AT1G79850.1 ribosomal protein S17)

HSP 1 Score: 172.6 bits (436), Expect = 2.0e-43
Identity = 94/141 (66.67%), Postives = 114/141 (80.85%), Query Frame = 1 

Query: 19  LKNLSVSTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAV 78
           L+ L +S+ F HGS PLS LSKP+ S    + P  +P I+AM+++QGRVVCAT+DKTVAV
Sbjct: 10  LQALKLSSPFAHGSTPLSSLSKPN-SFPNHRMPALVPVIRAMKTMQGRVVCATSDKTVAV 69

Query: 79  EVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNS 138
           EVVRLAPHPKYKRR+R+KKKYQAHDPDN+FKVGD V LEK RPISK K+F+A+PV AR +
Sbjct: 70  EVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKSRPISKTKSFVALPVIARAA 129

Query: 139 KPKAAEAGAGE-LGIPLESQQ 159
             + AEAG  E LG+PLESQQ
Sbjct: 130 --RKAEAGGDELLGLPLESQQ 147

[Close]
BLAST of Cp4.1LG12g08050 vs. TAIR10
Match: AT1G49400.1 (AT1G49400.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 48.9 bits (115), Expect = 3.4e-06
Identity = 32/88 (36.36%), Postives = 47/88 (53.41%), Query Frame = 1 

Query: 60  MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKC 119
           M+ + G VV     K+V V V RL  +  Y R ++   K+ AHD  +   +GD V+L+  
Sbjct: 1   MKPVIGTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDDKDACNIGDRVKLDPS 60

Query: 120 RPISKMKTFLAIPV--PARNSKPKAAEA 146
           RP+SK K ++   +   AR   PKAA A
Sbjct: 61  RPLSKNKHWIVAEIIKKARIYSPKAAAA 88

[Close]
BLAST of Cp4.1LG12g08050 vs. NCBI nr
Match: gi|659124452|ref|XP_008462167.1| (PREDICTED: 30S ribosomal protein S17, chloroplastic [Cucumis melo])

HSP 1 Score: 263.5 bits (672), Expect = 2.5e-67
Identity = 141/162 (87.04%), Postives = 147/162 (90.74%), Query Frame = 1 

Query: 1   MSATLSPSSFLQIPPLQRLKNLSVSTSFLHGSVPLSFLSKPS--PSLSASQTPNFLPSIK 60
           MS TL+ SS LQIPPLQ LK LS+S+SFLHGS PLSFLSKPS  PS  ASQTPNFLPSI+
Sbjct: 1   MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKPSSSPSPLASQTPNFLPSIR 60

Query: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEK 120
           AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDN+FKVGDFVELEK
Sbjct: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEK 120

Query: 121 CRPISKMKTFLAIPVPARNSKPKAAEAG-AGELGIPLESQQQ 160
           CRPISKMKTFLAIPVPAR SK KAAE G  GELGIPLESQQ+
Sbjct: 121 CRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQE 162

[Close]
BLAST of Cp4.1LG12g08050 vs. NCBI nr
Match: gi|449448022|ref|XP_004141765.1| (PREDICTED: 30S ribosomal protein S17, chloroplastic [Cucumis sativus])

HSP 1 Score: 258.8 bits (660), Expect = 6.1e-66
Identity = 138/162 (85.19%), Postives = 146/162 (90.12%), Query Frame = 1 

Query: 1   MSATLSPSSFLQIPPLQRLKNLSVSTSFLHGSVPLSFLSKPSPSLSA--SQTPNFLPSIK 60
           MS TL+ SS LQIPP+Q LK LS+S+SFLHGS PLSFLSKPS S S   SQTPNFLPSI+
Sbjct: 1   MSITLTSSSLLQIPPVQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPFPSQTPNFLPSIR 60

Query: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEK 120
           AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDN+F+VGDFVELEK
Sbjct: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFQVGDFVELEK 120

Query: 121 CRPISKMKTFLAIPVPARNSKPKAAEAG-AGELGIPLESQQQ 160
           CRPISKMKTFLAIPVPARNSK KA E G  GELGIPLESQQ+
Sbjct: 121 CRPISKMKTFLAIPVPARNSKKKAVEGGEGGELGIPLESQQE 162

[Close]
BLAST of Cp4.1LG12g08050 vs. NCBI nr
Match: gi|703104735|ref|XP_010098081.1| (30S ribosomal protein S17 [Morus notabilis])

HSP 1 Score: 208.4 bits (529), Expect = 9.4e-51
Identity = 110/160 (68.75%), Postives = 129/160 (80.62%), Query Frame = 1 

Query: 8   SSFLQIPPLQRLK-------NLSVSTSFLHGSVPLSFLSKPSPSLS--ASQTPNFLPSIK 67
           +S L +PPL  LK         + +T FLHGS+PLS LSKPS SL+   S  PNFLP I+
Sbjct: 5   ASLLHLPPLHSLKLSSSTTPTTTTTTHFLHGSIPLSLLSKPSSSLTNPTSCPPNFLPPIR 64

Query: 68  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEK 127
           AMRSLQGRVVCAT+DKTVAVEV+RLAPHPKYKRR+R KKK+QAHDPDN+FKVGD+V+LEK
Sbjct: 65  AMRSLQGRVVCATSDKTVAVEVLRLAPHPKYKRRVRKKKKFQAHDPDNQFKVGDYVQLEK 124

Query: 128 CRPISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQQ 159
            RPISK KTF+A+PVPARNS+ K A+  + ELGIPLESQQ
Sbjct: 125 SRPISKTKTFVAVPVPARNSRKKDADGESAELGIPLESQQ 164

[Close]
BLAST of Cp4.1LG12g08050 vs. NCBI nr
Match: gi|1009112335|ref|XP_015867702.1| (PREDICTED: 30S ribosomal protein S17, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 201.4 bits (511), Expect = 1.2e-48
Identity = 110/159 (69.18%), Postives = 128/159 (80.50%), Query Frame = 1 

Query: 10  FLQIPPLQRLK--NLSVSTSFLHGSVPLSFLSKPSPSL--SASQTPNFLPSIKAMRSLQG 69
           FLQ+PPL  LK  + + +TSFLHGS PLS LSKP+  +    S+ P+FLP+I+AMRSLQG
Sbjct: 7   FLQLPPLHSLKLSSSTPTTSFLHGSTPLSQLSKPNSCVIHPVSKPPSFLPTIRAMRSLQG 66

Query: 70  RVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPISKM 129
           +VVCATNDKTVAVEV RLAPHPKYKRR+R KKKYQAHDPDN+FKVGD V+LE+ +PISK 
Sbjct: 67  KVVCATNDKTVAVEVTRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDIVQLEESKPISKT 126

Query: 130 KTFLAIPVPARNSKPKAAEA----GAGELGIPLESQQQV 161
           KTFLAIPVP RNS  K A A    G  +LGIPLESQQQ+
Sbjct: 127 KTFLAIPVPKRNSNSKNAVAEEDDGTQQLGIPLESQQQL 165

[Close]
BLAST of Cp4.1LG12g08050 vs. NCBI nr
Match: gi|719994125|ref|XP_010254084.1| (PREDICTED: 30S ribosomal protein S17, chloroplastic [Nelumbo nucifera])

HSP 1 Score: 200.3 bits (508), Expect = 2.6e-48
Identity = 107/155 (69.03%), Postives = 129/155 (83.23%), Query Frame = 1 

Query: 6   SPSSFLQIPPLQRLKNLSVSTSFLHGSVPLSFLSKPSPSLSASQT--PNFLPSIKAMRSL 65
           SPSS LQ+PPL   K+L +S+ FL+GS P+  L+KPS SLS S    P+FLP I+AM+SL
Sbjct: 5   SPSSLLQLPPL---KSLKISSPFLYGSTPVRLLNKPSSSLSPSNPSPPSFLPPIRAMKSL 64

Query: 66  QGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPIS 125
           QGRVVCATNDKTVAVEVVRLAPHPKYKRR+R KKK+QAHDP+N+FKVGDFV+LEK +PIS
Sbjct: 65  QGRVVCATNDKTVAVEVVRLAPHPKYKRRVRKKKKFQAHDPENRFKVGDFVQLEKSKPIS 124

Query: 126 KMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQQ 159
           K K F+AIPV A+N+ PK+ EA   ELGIPLES++
Sbjct: 125 KTKAFIAIPVTAKNA-PKSTEALPQELGIPLESEK 155

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g08050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RR17_ARATH3.6e-4266.6730S ribosomal protein S17, chloroplastic OS=Arabidopsis thaliana GN=RPS17 PE=1 S... [more]
RR17_PEA2.8e-3457.4630S ribosomal protein S17, chloroplastic (Fragment) OS=Pisum sativum GN=RPS17 PE... [more]
RR17_MAIZE1.1e-2763.0630S ribosomal protein S17, chloroplastic OS=Zea mays GN=RPS17 PE=2 SV=1[more]
RR17_ORYSJ1.5e-2764.0830S ribosomal protein S17, chloroplastic OS=Oryza sativa subsp. japonica GN=RPS1... [more]
RS17_RHOSK3.5e-1350.7030S ribosomal protein S17 OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085)... [more]
BLAST of Cp4.1LG12g08050 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K952_CUCSA4.2e-6685.19Uncharacterized protein OS=Cucumis sativus GN=Csa_7G446990 PE=3 SV=1[more]
W9RUW3_9ROSA6.6e-5168.7530S ribosomal protein S17 OS=Morus notabilis GN=L484_026214 PE=3 SV=1[more]
D7U0I2_VITVI3.7e-4670.75Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g04330 PE=3 SV=... [more]
A0A061GAC0_THECC8.3e-4669.01Ribosomal protein S17 OS=Theobroma cacao GN=TCM_028766 PE=3 SV=1[more]
A0A068TRN2_COFCA1.8e-4567.70Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021991001 PE=3 SV=1[more]
BLAST of Cp4.1LG12g08050 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G79850.12.0e-4366.67 ribosomal protein S17[more]
AT1G49400.13.4e-0636.36 Nucleic acid-binding, OB-fold-like protein[more]
BLAST of Cp4.1LG12g08050 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659124452|ref|XP_008462167.1|2.5e-6787.04PREDICTED: 30S ribosomal protein S17, chloroplastic [Cucumis melo][more]
gi|449448022|ref|XP_004141765.1|6.1e-6685.19PREDICTED: 30S ribosomal protein S17, chloroplastic [Cucumis sativus][more]
gi|703104735|ref|XP_010098081.1|9.4e-5168.7530S ribosomal protein S17 [Morus notabilis][more]
gi|1009112335|ref|XP_015867702.1|1.2e-4869.18PREDICTED: 30S ribosomal protein S17, chloroplastic [Ziziphus jujuba][more]
gi|719994125|ref|XP_010254084.1|2.6e-4869.03PREDICTED: 30S ribosomal protein S17, chloroplastic [Nelumbo nucifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR019979Ribosomal_S17_CS
IPR012340NA-bd_OB-fold
IPR000266Ribosomal_S17/S11
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032544 plastid translation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0000312 plastid small ribosomal subunit
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g08050.1Cp4.1LG12g08050.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000266Ribosomal protein S17/S11PRODOMPD001295coord: 61..131
score: 7.0
IPR000266Ribosomal protein S17/S11PRINTSPR00973RIBOSOMALS17coord: 79..102
score: 2.3E-8coord: 121..128
score: 2.3E-8coord: 111..121
score: 2.
IPR000266Ribosomal protein S17/S11HAMAPMF_01345_BRibosomal_S17_Bcoord: 58..136
score: 18
IPR000266Ribosomal protein S17/S11PANTHERPTHR1074440S RIBOSOMAL PROTEIN S11 FAMILY MEMBERcoord: 51..155
score: 7.8
IPR000266Ribosomal protein S17/S11PFAMPF00366Ribosomal_S17coord: 65..128
score: 1.1
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 60..140
score: 3.9
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 60..137
score: 1.46
IPR019979Ribosomal protein S17, conserved sitePROSITEPS00056RIBOSOMAL_S17coord: 111..123
scor
NoneNo IPR availablePANTHERPTHR10744:SF730S RIBOSOMAL PROTEIN S17, CHLOROPLASTICcoord: 51..155
score: 7.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g08050CmaCh17G007930Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g08050CmaCh08G007060Cucurbita maxima (Rimu)cmacpeB903
Cp4.1LG12g08050CmoCh17G007610Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g08050CmoCh08G006720Cucurbita moschata (Rifu)cmocpeB839
Cp4.1LG12g08050Cla015452Watermelon (97103) v1cpewmB131
Cp4.1LG12g08050Csa7G446990Cucumber (Chinese Long) v2cpecuB161
Cp4.1LG12g08050MELO3C024255Melon (DHL92) v3.5.1cpemeB123
Cp4.1LG12g08050ClCG09G001940Watermelon (Charleston Gray)cpewcgB126
Cp4.1LG12g08050CSPI07G21510Wild cucumber (PI 183967)cpecpiB163
Cp4.1LG12g08050Lsi02G028020Bottle gourd (USVL1VR-Ls)cpelsiB113
Cp4.1LG12g08050MELO3C024255.2Melon (DHL92) v3.6.1cpemedB150
Cp4.1LG12g08050CsaV3_7G033420Cucumber (Chinese Long) v3cpecucB0188
Cp4.1LG12g08050Bhi09G000139Wax gourdcpewgoB0208
Cp4.1LG12g08050CsGy7G019840Cucumber (Gy14) v2cgybcpeB906
Cp4.1LG12g08050Carg09518Silver-seed gourdcarcpeB1424
Cp4.1LG12g08050Carg18788Silver-seed gourdcarcpeB1049
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG12g08050Cp4.1LG17g05620Cucurbita pepo (Zucchini)cpecpeB157
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g08050Cucumber (Chinese Long) v3cpecucB0156
Cp4.1LG12g08050Wax gourdcpewgoB0190
Cp4.1LG12g08050Cucurbita pepo (Zucchini)cpecpeB178
Cp4.1LG12g08050Cucurbita pepo (Zucchini)cpecpeB181
Cp4.1LG12g08050Cucurbita pepo (Zucchini)cpecpeB182
Cp4.1LG12g08050Cucurbita pepo (Zucchini)cpecpeB187
Cp4.1LG12g08050Cucumber (Gy14) v1cgycpeB0936
Cp4.1LG12g08050Cucurbita maxima (Rimu)cmacpeB257
Cp4.1LG12g08050Cucurbita maxima (Rimu)cmacpeB466
Cp4.1LG12g08050Cucurbita moschata (Rifu)cmocpeB221
Cp4.1LG12g08050Cucurbita moschata (Rifu)cmocpeB426
Cp4.1LG12g08050Bottle gourd (USVL1VR-Ls)cpelsiB127
Cp4.1LG12g08050Watermelon (Charleston Gray)cpewcgB148
Cp4.1LG12g08050Watermelon (97103) v1cpewmB145
Cp4.1LG12g08050Melon (DHL92) v3.5.1cpemeB132
Cp4.1LG12g08050Cucumber (Gy14) v2cgybcpeB306
Cp4.1LG12g08050Melon (DHL92) v3.6.1cpemedB159
Cp4.1LG12g08050Silver-seed gourdcarcpeB0182
Cp4.1LG12g08050Silver-seed gourdcarcpeB0171
Cp4.1LG12g08050Silver-seed gourdcarcpeB0280