CmoCh08G006720 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh08G006720
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description30S ribosomal protein S17
LocationCmo_Chr08 : 4317555 .. 4317860 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTCCCTGCAAGGCCGCGTGGTCTGCGCCACCAACGACAAGACCGTTGCCGTCGAAGTCGTGCGATTGGCGCCTCATCCGAAGTACAAACGGCGCATCAGAATCAAGAAGAAGTACCAGGCACACGATCCGGATAACCAGTTCAAGGTCGGAGACTTTGTGGAGCTTGAGAAATGCCGGCCGATTAGCAAGATGAAGACGTTCCTCGCCATTCCGGTTCCGGCAAGGAATTCGAAGCAGAAGGTGGCGGAAGCTGCGGCTGGGGACCTTGGGATTCCATTGGAGTCTCAGCAACAGGTTTAA

mRNA sequence

ATGAAGTCCCTGCAAGGCCGCGTGGTCTGCGCCACCAACGACAAGACCGTTGCCGTCGAAGTCGTGCGATTGGCGCCTCATCCGAAGTACAAACGGCGCATCAGAATCAAGAAGAAGTACCAGGCACACGATCCGGATAACCAGTTCAAGGTCGGAGACTTTGTGGAGCTTGAGAAATGCCGGCCGATTAGCAAGATGAAGACGTTCCTCGCCATTCCGGTTCCGGCAAGGAATTCGAAGCAGAAGGTGGCGGAAGCTGCGGCTGGGGACCTTGGGATTCCATTGGAGTCTCAGCAACAGGTTTAA

Coding sequence (CDS)

ATGAAGTCCCTGCAAGGCCGCGTGGTCTGCGCCACCAACGACAAGACCGTTGCCGTCGAAGTCGTGCGATTGGCGCCTCATCCGAAGTACAAACGGCGCATCAGAATCAAGAAGAAGTACCAGGCACACGATCCGGATAACCAGTTCAAGGTCGGAGACTTTGTGGAGCTTGAGAAATGCCGGCCGATTAGCAAGATGAAGACGTTCCTCGCCATTCCGGTTCCGGCAAGGAATTCGAAGCAGAAGGTGGCGGAAGCTGCGGCTGGGGACCTTGGGATTCCATTGGAGTCTCAGCAACAGGTTTAA
Homology
[Close]
BLAST of CmoCh08G006720 vs. Swiss-Prot
Match: RR17_ARATH (30S ribosomal protein S17, chloroplastic OS=Arabidopsis thaliana GN=RPS17 PE=1 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 2.3e-34
Identity = 75/100 (75.00%), Postives = 88/100 (88.00%), Query Frame = 1 

Query: 1   MKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKC 60
           MK++QGRVVCAT+DKTVAVEVVRLAPHPKYKRR+R+KKKYQAHDPDNQFKVGD V LEK 
Sbjct: 50  MKTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKS 109

Query: 61  RPISKMKTFLAIPVPARNSKQKVAEAAAGD-LGIPLESQQ 100
           RPISK K+F+A+PV AR +++  AEA   + LG+PLESQQ
Sbjct: 110 RPISKTKSFVALPVIARAARK--AEAGGDELLGLPLESQQ 147

[Close]
BLAST of CmoCh08G006720 vs. Swiss-Prot
Match: RR17_PEA (30S ribosomal protein S17, chloroplastic (Fragment) OS=Pisum sativum GN=RPS17 PE=2 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 7.3e-33
Identity = 67/100 (67.00%), Postives = 86/100 (86.00%), Query Frame = 1 

Query: 1   MKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKC 60
           MK+++G+VVCA+ +KTVAVEV RLAPHPKY++RIR+KKKYQAHDP+N FKVGD V+L K 
Sbjct: 38  MKTMEGKVVCASGNKTVAVEVTRLAPHPKYQKRIRLKKKYQAHDPENDFKVGDIVQLLKT 97

Query: 61  RPISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ 101
           RPISK KTFLA+P P+R SK+     ++G+LGIPL+SQQ+
Sbjct: 98  RPISKKKTFLAVPAPSRKSKK---AGSSGELGIPLQSQQE 134

[Close]
BLAST of CmoCh08G006720 vs. Swiss-Prot
Match: RR17_ORYSJ (30S ribosomal protein S17, chloroplastic OS=Oryza sativa subsp. japonica GN=RPS17 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 5.4e-28
Identity = 66/99 (66.67%), Postives = 74/99 (74.75%), Query Frame = 1 

Query: 2   KSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCR 61
           K L GRVV    DKTV VEVVRLAPHPKYKRR RIKKKYQAHDPDNQFKVGD VEL + R
Sbjct: 38  KQLTGRVVTTKADKTVGVEVVRLAPHPKYKRRERIKKKYQAHDPDNQFKVGDVVELRRSR 97

Query: 62  PISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ 101
           PISK K FLA+P+P R++++K        L  PL+SQ Q
Sbjct: 98  PISKTKHFLAVPLPPRDTRRK------SQLLPPLQSQSQ 130

[Close]
BLAST of CmoCh08G006720 vs. Swiss-Prot
Match: RR17_MAIZE (30S ribosomal protein S17, chloroplastic OS=Zea mays GN=RPS17 PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 6.0e-27
Identity = 60/81 (74.07%), Postives = 67/81 (82.72%), Query Frame = 1 

Query: 2   KSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCR 61
           + L GRVV    DKTV VEVVRLAPHPKYKRR RIKKKYQAHDPDNQFKVGD VEL+  R
Sbjct: 33  RQLTGRVVTTKADKTVGVEVVRLAPHPKYKRRERIKKKYQAHDPDNQFKVGDVVELQPSR 92

Query: 62  PISKMKTFLAIPVPARNSKQK 83
           PISK K FLAIP+P R++++K
Sbjct: 93  PISKTKHFLAIPLPPRDTRRK 113

[Close]
BLAST of CmoCh08G006720 vs. Swiss-Prot
Match: RS17_RHOS1 (30S ribosomal protein S17 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.7e-13
Identity = 36/69 (52.17%), Postives = 47/69 (68.12%), Query Frame = 1 

Query: 4  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI 63
          LQG V    N++TV V V R   HP  K+ +R+ KKY+AHDP+NQFKVGD V +E+C PI
Sbjct: 6  LQGTVTSDKNEQTVTVLVERRFKHPLLKKTVRLSKKYRAHDPENQFKVGDIVRIEECAPI 65

Query: 64 SKMKTFLAI 73
          SK K +  +
Sbjct: 66 SKTKRWKVV 74

[Close]
BLAST of CmoCh08G006720 vs. TrEMBL
Match: A0A0A0K952_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G446990 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.6e-42
Identity = 90/101 (89.11%), Postives = 95/101 (94.06%), Query Frame = 1 

Query: 1   MKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKC 60
           M+SLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQF+VGDFVELEKC
Sbjct: 62  MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFQVGDFVELEKC 121

Query: 61  RPISKMKTFLAIPVPARNSKQKVAEAA-AGDLGIPLESQQQ 101
           RPISKMKTFLAIPVPARNSK+K  E    G+LGIPLESQQ+
Sbjct: 122 RPISKMKTFLAIPVPARNSKKKAVEGGEGGELGIPLESQQE 162

[Close]
BLAST of CmoCh08G006720 vs. TrEMBL
Match: W9RUW3_9ROSA (30S ribosomal protein S17 OS=Morus notabilis GN=L484_026214 PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.5e-37
Identity = 78/99 (78.79%), Postives = 92/99 (92.93%), Query Frame = 1 

Query: 1   MKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKC 60
           M+SLQGRVVCAT+DKTVAVEV+RLAPHPKYKRR+R KKK+QAHDPDNQFKVGD+V+LEK 
Sbjct: 66  MRSLQGRVVCATSDKTVAVEVLRLAPHPKYKRRVRKKKKFQAHDPDNQFKVGDYVQLEKS 125

Query: 61  RPISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQ 100
           RPISK KTF+A+PVPARNS++K A+  + +LGIPLESQQ
Sbjct: 126 RPISKTKTFVAVPVPARNSRKKDADGESAELGIPLESQQ 164

[Close]
BLAST of CmoCh08G006720 vs. TrEMBL
Match: D7U0I2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g04330 PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.7e-36
Identity = 82/99 (82.83%), Postives = 89/99 (89.90%), Query Frame = 1 

Query: 1   MKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKC 60
           MKS+QGRVVCAT+DKTVAVEVVRLAPHPKYKRR+R KKKYQAHDPDNQFKVGD V+LEK 
Sbjct: 91  MKSMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDVVQLEKS 150

Query: 61  RPISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQ 100
           RPISK KTF+AIPVP RN + K  EAAAG+L IPLESQQ
Sbjct: 151 RPISKTKTFVAIPVPNRN-RAKSQEAAAGELEIPLESQQ 188

[Close]
BLAST of CmoCh08G006720 vs. TrEMBL
Match: A0A0D2ULD7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G135000 PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.7e-36
Identity = 79/99 (79.80%), Postives = 90/99 (90.91%), Query Frame = 1 

Query: 1   MKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKC 60
           MKS+QGRVVCATNDKTVAVEVVRLAPHPKYKRR+R KKK+QAHDPDNQFKVGD+V+LEK 
Sbjct: 50  MKSMQGRVVCATNDKTVAVEVVRLAPHPKYKRRVRKKKKFQAHDPDNQFKVGDYVQLEKS 109

Query: 61  RPISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQ 100
           RPISK KTF+A+ VP+RN KQ+  E  AG+LGIPLES+Q
Sbjct: 110 RPISKTKTFIAVAVPSRNGKQEKEE--AGELGIPLESKQ 146

[Close]
BLAST of CmoCh08G006720 vs. TrEMBL
Match: A0A061GAC0_THECC (Ribosomal protein S17 OS=Theobroma cacao GN=TCM_028766 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 6.4e-36
Identity = 76/99 (76.77%), Postives = 90/99 (90.91%), Query Frame = 1 

Query: 1   MKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKC 60
           +KSLQG+VVCATNDKTV+VEVVRLAPHPKYKRR+R KKK+QAHDPDNQFKVGD+V+LEK 
Sbjct: 50  LKSLQGKVVCATNDKTVSVEVVRLAPHPKYKRRVRKKKKFQAHDPDNQFKVGDYVQLEKS 109

Query: 61  RPISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQ 100
           RPISK KTF+A+PVP++N +Q+  E   G+LGIPLESQQ
Sbjct: 110 RPISKTKTFIAVPVPSKNGRQEKKE--TGELGIPLESQQ 146

[Close]
BLAST of CmoCh08G006720 vs. TAIR10
Match: AT1G79850.1 (AT1G79850.1 ribosomal protein S17)

HSP 1 Score: 146.0 bits (367), Expect = 1.3e-35
Identity = 75/100 (75.00%), Postives = 88/100 (88.00%), Query Frame = 1 

Query: 1   MKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKC 60
           MK++QGRVVCAT+DKTVAVEVVRLAPHPKYKRR+R+KKKYQAHDPDNQFKVGD V LEK 
Sbjct: 50  MKTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKS 109

Query: 61  RPISKMKTFLAIPVPARNSKQKVAEAAAGD-LGIPLESQQ 100
           RPISK K+F+A+PV AR +++  AEA   + LG+PLESQQ
Sbjct: 110 RPISKTKSFVALPVIARAARK--AEAGGDELLGLPLESQQ 147

[Close]
BLAST of CmoCh08G006720 vs. TAIR10
Match: AT1G49400.1 (AT1G49400.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 47.4 bits (111), Expect = 6.2e-06
Identity = 32/89 (35.96%), Postives = 46/89 (51.69%), Query Frame = 1 

Query: 1  MKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKC 60
          MK + G VV     K+V V V RL  +  Y R ++   K+ AHD  +   +GD V+L+  
Sbjct: 1  MKPVIGTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDDKDACNIGDRVKLDPS 60

Query: 61 RPISKMKTFLAIPV--PARNSKQKVAEAA 88
          RP+SK K ++   +   AR    K A AA
Sbjct: 61 RPLSKNKHWIVAEIIKKARIYSPKAAAAA 89

[Close]
BLAST of CmoCh08G006720 vs. NCBI nr
Match: gi|659124452|ref|XP_008462167.1| (PREDICTED: 30S ribosomal protein S17, chloroplastic [Cucumis melo])

HSP 1 Score: 180.6 bits (457), Expect = 1.3e-42
Identity = 91/101 (90.10%), Postives = 95/101 (94.06%), Query Frame = 1 

Query: 1   MKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKC 60
           M+SLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKC
Sbjct: 62  MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKC 121

Query: 61  RPISKMKTFLAIPVPARNSKQKVAEAA-AGDLGIPLESQQQ 101
           RPISKMKTFLAIPVPAR SK+K AE    G+LGIPLESQQ+
Sbjct: 122 RPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQE 162

[Close]
BLAST of CmoCh08G006720 vs. NCBI nr
Match: gi|449448022|ref|XP_004141765.1| (PREDICTED: 30S ribosomal protein S17, chloroplastic [Cucumis sativus])

HSP 1 Score: 179.9 bits (455), Expect = 2.3e-42
Identity = 90/101 (89.11%), Postives = 95/101 (94.06%), Query Frame = 1 

Query: 1   MKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKC 60
           M+SLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQF+VGDFVELEKC
Sbjct: 62  MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFQVGDFVELEKC 121

Query: 61  RPISKMKTFLAIPVPARNSKQKVAEAA-AGDLGIPLESQQQ 101
           RPISKMKTFLAIPVPARNSK+K  E    G+LGIPLESQQ+
Sbjct: 122 RPISKMKTFLAIPVPARNSKKKAVEGGEGGELGIPLESQQE 162

[Close]
BLAST of CmoCh08G006720 vs. NCBI nr
Match: gi|703104735|ref|XP_010098081.1| (30S ribosomal protein S17 [Morus notabilis])

HSP 1 Score: 163.3 bits (412), Expect = 2.2e-37
Identity = 78/99 (78.79%), Postives = 92/99 (92.93%), Query Frame = 1 

Query: 1   MKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKC 60
           M+SLQGRVVCAT+DKTVAVEV+RLAPHPKYKRR+R KKK+QAHDPDNQFKVGD+V+LEK 
Sbjct: 66  MRSLQGRVVCATSDKTVAVEVLRLAPHPKYKRRVRKKKKFQAHDPDNQFKVGDYVQLEKS 125

Query: 61  RPISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQ 100
           RPISK KTF+A+PVPARNS++K A+  + +LGIPLESQQ
Sbjct: 126 RPISKTKTFVAVPVPARNSRKKDADGESAELGIPLESQQ 164

[Close]
BLAST of CmoCh08G006720 vs. NCBI nr
Match: gi|297743261|emb|CBI36128.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 159.8 bits (403), Expect = 2.4e-36
Identity = 82/99 (82.83%), Postives = 89/99 (89.90%), Query Frame = 1 

Query: 1   MKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKC 60
           MKS+QGRVVCAT+DKTVAVEVVRLAPHPKYKRR+R KKKYQAHDPDNQFKVGD V+LEK 
Sbjct: 91  MKSMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDVVQLEKS 150

Query: 61  RPISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQ 100
           RPISK KTF+AIPVP RN + K  EAAAG+L IPLESQQ
Sbjct: 151 RPISKTKTFVAIPVPNRN-RAKSQEAAAGELEIPLESQQ 188

[Close]
BLAST of CmoCh08G006720 vs. NCBI nr
Match: gi|823220540|ref|XP_012442970.1| (PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Gossypium raimondii])

HSP 1 Score: 159.8 bits (403), Expect = 2.4e-36
Identity = 79/99 (79.80%), Postives = 90/99 (90.91%), Query Frame = 1 

Query: 1   MKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKC 60
           MKS+QGRVVCATNDKTVAVEVVRLAPHPKYKRR+R KKK+QAHDPDNQFKVGD+V+LEK 
Sbjct: 50  MKSMQGRVVCATNDKTVAVEVVRLAPHPKYKRRVRKKKKFQAHDPDNQFKVGDYVQLEKS 109

Query: 61  RPISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQ 100
           RPISK KTF+A+ VP+RN KQ+  E  AG+LGIPLES+Q
Sbjct: 110 RPISKTKTFIAVAVPSRNGKQEKEE--AGELGIPLESKQ 146

The following BLAST results are available for this feature:
BLAST of CmoCh08G006720 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RR17_ARATH2.3e-3475.0030S ribosomal protein S17, chloroplastic OS=Arabidopsis thaliana GN=RPS17 PE=1 S... [more]
RR17_PEA7.3e-3367.0030S ribosomal protein S17, chloroplastic (Fragment) OS=Pisum sativum GN=RPS17 PE... [more]
RR17_ORYSJ5.4e-2866.6730S ribosomal protein S17, chloroplastic OS=Oryza sativa subsp. japonica GN=RPS1... [more]
RR17_MAIZE6.0e-2774.0730S ribosomal protein S17, chloroplastic OS=Zea mays GN=RPS17 PE=2 SV=1[more]
RS17_RHOS11.7e-1352.1730S ribosomal protein S17 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.... [more]
BLAST of CmoCh08G006720 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K952_CUCSA1.6e-4289.11Uncharacterized protein OS=Cucumis sativus GN=Csa_7G446990 PE=3 SV=1[more]
W9RUW3_9ROSA1.5e-3778.7930S ribosomal protein S17 OS=Morus notabilis GN=L484_026214 PE=3 SV=1[more]
D7U0I2_VITVI1.7e-3682.83Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g04330 PE=3 SV=... [more]
A0A0D2ULD7_GOSRA1.7e-3679.80Uncharacterized protein OS=Gossypium raimondii GN=B456_009G135000 PE=3 SV=1[more]
A0A061GAC0_THECC6.4e-3676.77Ribosomal protein S17 OS=Theobroma cacao GN=TCM_028766 PE=3 SV=1[more]
BLAST of CmoCh08G006720 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G79850.11.3e-3575.00 ribosomal protein S17[more]
AT1G49400.16.2e-0635.96 Nucleic acid-binding, OB-fold-like protein[more]
BLAST of CmoCh08G006720 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659124452|ref|XP_008462167.1|1.3e-4290.10PREDICTED: 30S ribosomal protein S17, chloroplastic [Cucumis melo][more]
gi|449448022|ref|XP_004141765.1|2.3e-4289.11PREDICTED: 30S ribosomal protein S17, chloroplastic [Cucumis sativus][more]
gi|703104735|ref|XP_010098081.1|2.2e-3778.7930S ribosomal protein S17 [Morus notabilis][more]
gi|297743261|emb|CBI36128.3|2.4e-3682.83unnamed protein product [Vitis vinifera][more]
gi|823220540|ref|XP_012442970.1|2.4e-3679.80PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000266Ribosomal_S17/S11
IPR012340NA-bd_OB-fold
IPR019979Ribosomal_S17_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032544 plastid translation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0000312 plastid small ribosomal subunit
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh08G006720.1CmoCh08G006720.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000266Ribosomal protein S17/S11PRODOMPD001295coord: 2..72
score: 6.0
IPR000266Ribosomal protein S17/S11PRINTSPR00973RIBOSOMALS17coord: 20..43
score: 9.4E-9coord: 62..69
score: 9.4E-9coord: 52..62
score: 9.
IPR000266Ribosomal protein S17/S11HAMAPMF_01345_BRibosomal_S17_Bcoord: 1..77
score: 17
IPR000266Ribosomal protein S17/S11PANTHERPTHR1074440S RIBOSOMAL PROTEIN S11 FAMILY MEMBERcoord: 1..96
score: 2.8
IPR000266Ribosomal protein S17/S11PFAMPF00366Ribosomal_S17coord: 6..69
score: 1.7
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 2..81
score: 7.1
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 2..77
score: 2.48
IPR019979Ribosomal protein S17, conserved sitePROSITEPS00056RIBOSOMAL_S17coord: 52..64
scor
NoneNo IPR availablePANTHERPTHR10744:SF730S RIBOSOMAL PROTEIN S17, CHLOROPLASTICcoord: 1..96
score: 2.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh08G006720CmaCh17G007930Cucurbita maxima (Rimu)cmacmoB375
CmoCh08G006720CmaCh08G007060Cucurbita maxima (Rimu)cmacmoB912
CmoCh08G006720Cla015452Watermelon (97103) v1cmowmB845
CmoCh08G006720Csa7G446990Cucumber (Chinese Long) v2cmocuB901
CmoCh08G006720MELO3C024255Melon (DHL92) v3.5.1cmomeB811
CmoCh08G006720ClCG09G001940Watermelon (Charleston Gray)cmowcgB787
CmoCh08G006720CSPI07G21510Wild cucumber (PI 183967)cmocpiB914
CmoCh08G006720Cp4.1LG12g08050Cucurbita pepo (Zucchini)cmocpeB839
CmoCh08G006720Cp4.1LG17g05620Cucurbita pepo (Zucchini)cmocpeB853
CmoCh08G006720MELO3C024255.2Melon (DHL92) v3.6.1cmomedB914
CmoCh08G006720Cla97C09G164070Watermelon (97103) v2cmowmbB918
CmoCh08G006720Bhi09G000139Wax gourdcmowgoB1119
CmoCh08G006720CsGy7G019840Cucumber (Gy14) v2cgybcmoB956
CmoCh08G006720Carg09518Silver-seed gourdcarcmoB1379
CmoCh08G006720Carg18788Silver-seed gourdcarcmoB1018
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh08G006720CmoCh17G007610Cucurbita moschata (Rifu)cmocmoB320
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh08G006720Wild cucumber (PI 183967)cmocpiB890
CmoCh08G006720Cucumber (Chinese Long) v2cmocuB876
CmoCh08G006720Melon (DHL92) v3.5.1cmomeB823
CmoCh08G006720Watermelon (Charleston Gray)cmowcgB805
CmoCh08G006720Watermelon (97103) v1cmowmB855
CmoCh08G006720Watermelon (97103) v1cmowmB866
CmoCh08G006720Cucurbita pepo (Zucchini)cmocpeB854
CmoCh08G006720Cucurbita pepo (Zucchini)cmocpeB863
CmoCh08G006720Bottle gourd (USVL1VR-Ls)cmolsiB810
CmoCh08G006720Bottle gourd (USVL1VR-Ls)cmolsiB829
CmoCh08G006720Cucumber (Gy14) v2cgybcmoB429
CmoCh08G006720Melon (DHL92) v3.6.1cmomedB930
CmoCh08G006720Silver-seed gourdcarcmoB0169
CmoCh08G006720Silver-seed gourdcarcmoB0180
CmoCh08G006720Silver-seed gourdcarcmoB0289
CmoCh08G006720Cucumber (Chinese Long) v3cmocucB1042
CmoCh08G006720Cucumber (Chinese Long) v3cmocucB1067
CmoCh08G006720Watermelon (97103) v2cmowmbB895
CmoCh08G006720Watermelon (97103) v2cmowmbB902
CmoCh08G006720Wax gourdcmowgoB1108
CmoCh08G006720Wax gourdcmowgoB1135
CmoCh08G006720Cucurbita moschata (Rifu)cmocmoB134
CmoCh08G006720Cucurbita moschata (Rifu)cmocmoB234
CmoCh08G006720Cucurbita moschata (Rifu)cmocmoB379
CmoCh08G006720Cucumber (Gy14) v1cgycmoB0086
CmoCh08G006720Cucumber (Gy14) v1cgycmoB0989
CmoCh08G006720Cucurbita maxima (Rimu)cmacmoB280
CmoCh08G006720Cucurbita maxima (Rimu)cmacmoB491