CmoCh17G007610 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh17G007610
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description30S ribosomal protein S17
LocationCmo_Chr17 : 7449674 .. 7450153 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGCTCTGAGTCCCTCATCCTTTCTGCAAATTCCTCCATTACAGAGGCTGAAGAACCTCTCAATTTCCACTTCCTTCCTCCATGGCTCAGTTCCTCTGTCATTTCTCTCTAAGCCTTCGCCCTCGCTATCGGCCTCCCAAACCCCCAATTTCCTCCCCTCGATTAAGGCCATGAGGTCGCTGCAAGGCCGTGTGGTCTGCGCTACCAACGACAAGACCGTCGCCGTCGAGGTCGTGCGATTGGCGCCTCATCCGAAATACAAACGGCGCATTAGAATCAAGAAGAAGTACCAGGCGCACGATCCGGATAACAAATTCAAGGTCGGAGACTTTGTGGAGCTTGAAAAATGCCGGCCGATCAGCAAGATGAAGACGTTCCTGGCCATTCCAGTTCCGGCGAGGAATTCGAAGCCGAAAGCGGCGGAAGCCGGTGCTGGAGAGCTCGGGATTCCATTGGAGTCGCAGGAACAGGTTTAA

mRNA sequence

ATGTCTGCTCTGAGTCCCTCATCCTTTCTGCAAATTCCTCCATTACAGAGGCTGAAGAACCTCTCAATTTCCACTTCCTTCCTCCATGGCTCAGTTCCTCTGTCATTTCTCTCTAAGCCTTCGCCCTCGCTATCGGCCTCCCAAACCCCCAATTTCCTCCCCTCGATTAAGGCCATGAGGTCGCTGCAAGGCCGTGTGGTCTGCGCTACCAACGACAAGACCGTCGCCGTCGAGGTCGTGCGATTGGCGCCTCATCCGAAATACAAACGGCGCATTAGAATCAAGAAGAAGTACCAGGCGCACGATCCGGATAACAAATTCAAGGTCGGAGACTTTGTGGAGCTTGAAAAATGCCGGCCGATCAGCAAGATGAAGACGTTCCTGGCCATTCCAGTTCCGGCGAGGAATTCGAAGCCGAAAGCGGCGGAAGCCGGTGCTGGAGAGCTCGGGATTCCATTGGAGTCGCAGGAACAGGTTTAA

Coding sequence (CDS)

ATGTCTGCTCTGAGTCCCTCATCCTTTCTGCAAATTCCTCCATTACAGAGGCTGAAGAACCTCTCAATTTCCACTTCCTTCCTCCATGGCTCAGTTCCTCTGTCATTTCTCTCTAAGCCTTCGCCCTCGCTATCGGCCTCCCAAACCCCCAATTTCCTCCCCTCGATTAAGGCCATGAGGTCGCTGCAAGGCCGTGTGGTCTGCGCTACCAACGACAAGACCGTCGCCGTCGAGGTCGTGCGATTGGCGCCTCATCCGAAATACAAACGGCGCATTAGAATCAAGAAGAAGTACCAGGCGCACGATCCGGATAACAAATTCAAGGTCGGAGACTTTGTGGAGCTTGAAAAATGCCGGCCGATCAGCAAGATGAAGACGTTCCTGGCCATTCCAGTTCCGGCGAGGAATTCGAAGCCGAAAGCGGCGGAAGCCGGTGCTGGAGAGCTCGGGATTCCATTGGAGTCGCAGGAACAGGTTTAA
Homology
[Close]
BLAST of CmoCh17G007610 vs. Swiss-Prot
Match: RR17_ARATH (30S ribosomal protein S17, chloroplastic OS=Arabidopsis thaliana GN=RPS17 PE=1 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 6.1e-42
Identity = 93/141 (65.96%), Postives = 114/141 (80.85%), Query Frame = 1 

Query: 18  LKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAV 77
           L+ L +S+ F HGS PLS LSKP+ S    + P  +P I+AM+++QGRVVCAT+DKTVAV
Sbjct: 10  LQALKLSSPFAHGSTPLSSLSKPN-SFPNHRMPALVPVIRAMKTMQGRVVCATSDKTVAV 69

Query: 78  EVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNS 137
           EVVRLAPHPKYKRR+R+KKKYQAHDPDN+FKVGD V LEK RPISK K+F+A+PV AR +
Sbjct: 70  EVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKSRPISKTKSFVALPVIARAA 129

Query: 138 KPKAAEAGAGE-LGIPLESQE 158
             + AEAG  E LG+PLESQ+
Sbjct: 130 --RKAEAGGDELLGLPLESQQ 147

[Close]
BLAST of CmoCh17G007610 vs. Swiss-Prot
Match: RR17_PEA (30S ribosomal protein S17, chloroplastic (Fragment) OS=Pisum sativum GN=RPS17 PE=2 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 6.1e-34
Identity = 76/134 (56.72%), Postives = 98/134 (73.13%), Query Frame = 1 

Query: 27  FLHGSVPLSFLSKP--SPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAP 86
           F    + L+  S P  SP           P+IKAM++++G+VVCA+ +KTVAVEV RLAP
Sbjct: 4   FTGNGIGLNRFSNPISSPQTQTQTRSLPFPAIKAMKTMEGKVVCASGNKTVAVEVTRLAP 63

Query: 87  HPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNSKPKAAEA 146
           HPKY++RIR+KKKYQAHDP+N FKVGD V+L K RPISK KTFLA+P P+R SK   +  
Sbjct: 64  HPKYQKRIRLKKKYQAHDPENDFKVGDIVQLLKTRPISKKKTFLAVPAPSRKSKKAGS-- 123

Query: 147 GAGELGIPLESQEQ 159
            +GELGIPL+SQ++
Sbjct: 124 -SGELGIPLQSQQE 134

[Close]
BLAST of CmoCh17G007610 vs. Swiss-Prot
Match: RR17_MAIZE (30S ribosomal protein S17, chloroplastic OS=Zea mays GN=RPS17 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 8.5e-28
Identity = 74/127 (58.27%), Postives = 87/127 (68.50%), Query Frame = 1 

Query: 31  SVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKR 90
           S P   +S P P LS+      L  I+A R L GRVV    DKTV VEVVRLAPHPKYKR
Sbjct: 5   SSPFVSVSPPPPPLSSHGARPAL-RIEAARQLTGRVVTTKADKTVGVEVVRLAPHPKYKR 64

Query: 91  RIRIKKKYQAHDPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNSKPKAAEAGAGELG 150
           R RIKKKYQAHDPDN+FKVGD VEL+  RPISK K FLAIP+P R+++ K+      +L 
Sbjct: 65  RERIKKKYQAHDPDNQFKVGDVVELQPSRPISKTKHFLAIPLPPRDTRRKS------QLL 124

Query: 151 IPLESQE 158
            PL+S +
Sbjct: 125 PPLQSDD 124

[Close]
BLAST of CmoCh17G007610 vs. Swiss-Prot
Match: RR17_ORYSJ (30S ribosomal protein S17, chloroplastic OS=Oryza sativa subsp. japonica GN=RPS17 PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.5e-27
Identity = 66/103 (64.08%), Postives = 78/103 (75.73%), Query Frame = 1 

Query: 56  IKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVEL 115
           I+A + L GRVV    DKTV VEVVRLAPHPKYKRR RIKKKYQAHDPDN+FKVGD VEL
Sbjct: 34  IQAAKQLTGRVVTTKADKTVGVEVVRLAPHPKYKRRERIKKKYQAHDPDNQFKVGDVVEL 93

Query: 116 EKCRPISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQ 159
            + RPISK K FLA+P+P R+++ K+      +L  PL+SQ Q
Sbjct: 94  RRSRPISKTKHFLAVPLPPRDTRRKS------QLLPPLQSQSQ 130

[Close]
BLAST of CmoCh17G007610 vs. Swiss-Prot
Match: RS17_RHOSK (30S ribosomal protein S17 OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.5e-13
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 1 

Query: 60  RSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCR 119
           R LQG V    N++TV V V R   HP  K+ +R+ KKY+AHDP+N+FKVGD V +E+C 
Sbjct: 4   RILQGTVTSDKNEQTVTVLVERRFKHPLLKKTVRLSKKYRAHDPENQFKVGDIVRIEECA 63

Query: 120 PISKMKTFLAI 131
           PISK K +  +
Sbjct: 64  PISKTKRWKVV 74

[Close]
BLAST of CmoCh17G007610 vs. TrEMBL
Match: A0A0A0K952_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G446990 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 2.3e-64
Identity = 135/158 (85.44%), Postives = 143/158 (90.51%), Query Frame = 1 

Query: 4   LSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSA--SQTPNFLPSIKAMRS 63
           L+ SS LQIPP+Q LK LSIS+SFLHGS PLSFLSKPS S S   SQTPNFLPSI+AMRS
Sbjct: 5   LTSSSLLQIPPVQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPFPSQTPNFLPSIRAMRS 64

Query: 64  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPI 123
           LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDN+F+VGDFVELEKCRPI
Sbjct: 65  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFQVGDFVELEKCRPI 124

Query: 124 SKMKTFLAIPVPARNSKPKAAEAG-AGELGIPLESQEQ 159
           SKMKTFLAIPVPARNSK KA E G  GELGIPLESQ++
Sbjct: 125 SKMKTFLAIPVPARNSKKKAVEGGEGGELGIPLESQQE 162

[Close]
BLAST of CmoCh17G007610 vs. TrEMBL
Match: W9RUW3_9ROSA (30S ribosomal protein S17 OS=Morus notabilis GN=L484_026214 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.9e-50
Identity = 109/160 (68.12%), Postives = 129/160 (80.62%), Query Frame = 1 

Query: 7   SSFLQIPPLQRLK-------NLSISTSFLHGSVPLSFLSKPSPSLS--ASQTPNFLPSIK 66
           +S L +PPL  LK         + +T FLHGS+PLS LSKPS SL+   S  PNFLP I+
Sbjct: 5   ASLLHLPPLHSLKLSSSTTPTTTTTTHFLHGSIPLSLLSKPSSSLTNPTSCPPNFLPPIR 64

Query: 67  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEK 126
           AMRSLQGRVVCAT+DKTVAVEV+RLAPHPKYKRR+R KKK+QAHDPDN+FKVGD+V+LEK
Sbjct: 65  AMRSLQGRVVCATSDKTVAVEVLRLAPHPKYKRRVRKKKKFQAHDPDNQFKVGDYVQLEK 124

Query: 127 CRPISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQE 158
            RPISK KTF+A+PVPARNS+ K A+  + ELGIPLESQ+
Sbjct: 125 SRPISKTKTFVAVPVPARNSRKKDADGESAELGIPLESQQ 164

[Close]
BLAST of CmoCh17G007610 vs. TrEMBL
Match: D7U0I2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g04330 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 8.3e-46
Identity = 103/147 (70.07%), Postives = 120/147 (81.63%), Query Frame = 1 

Query: 13  PPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTP--NFLPSIKAMRSLQGRVVCAT 72
           P +  L++L ++T FLHGS  LS LSKPS +  AS  P   FLP I+AM+S+QGRVVCAT
Sbjct: 43  PAMSLLQSLKLTTPFLHGSSNLSLLSKPSSTSLASPPPPPTFLPPIRAMKSMQGRVVCAT 102

Query: 73  NDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPISKMKTFLAI 132
           +DKTVAVEVVRLAPHPKYKRR+R KKKYQAHDPDN+FKVGD V+LEK RPISK KTF+AI
Sbjct: 103 SDKTVAVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDVVQLEKSRPISKTKTFVAI 162

Query: 133 PVPARNSKPKAAEAGAGELGIPLESQE 158
           PVP RN + K+ EA AGEL IPLESQ+
Sbjct: 163 PVPNRN-RAKSQEAAAGELEIPLESQQ 188

[Close]
BLAST of CmoCh17G007610 vs. TrEMBL
Match: A0A061GAC0_THECC (Ribosomal protein S17 OS=Theobroma cacao GN=TCM_028766 PE=3 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.4e-45
Identity = 97/142 (68.31%), Postives = 120/142 (84.51%), Query Frame = 1 

Query: 18  LKNLSISTSFLHGSVPLSFLSKPSPSLSAS--QTPNFLPSIKAMRSLQGRVVCATNDKTV 77
           L++L +S+ FLHGS  LS LSKP+ SLS    +TP FLP I+A++SLQG+VVCATNDKTV
Sbjct: 7   LQSLKLSSPFLHGSTSLSLLSKPNSSLSHQPLKTPTFLPPIRALKSLQGKVVCATNDKTV 66

Query: 78  AVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPISKMKTFLAIPVPAR 137
           +VEVVRLAPHPKYKRR+R KKK+QAHDPDN+FKVGD+V+LEK RPISK KTF+A+PVP++
Sbjct: 67  SVEVVRLAPHPKYKRRVRKKKKFQAHDPDNQFKVGDYVQLEKSRPISKTKTFIAVPVPSK 126

Query: 138 NSKPKAAEAGAGELGIPLESQE 158
           N + +  E   GELGIPLESQ+
Sbjct: 127 NGRQEKKE--TGELGIPLESQQ 146

[Close]
BLAST of CmoCh17G007610 vs. TrEMBL
Match: A0A068TRN2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021991001 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 9.1e-45
Identity = 104/154 (67.53%), Postives = 123/154 (79.87%), Query Frame = 1 

Query: 7   SSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTP--NFLPSIKAMRSLQG 66
           S+ LQ+P L + K+L++ST FLHGS P+S LSKPS SLS ++T     LP I+AM+S+QG
Sbjct: 5   SAILQLP-LSQFKSLTLSTPFLHGSTPISLLSKPSSSLSNARTSPLTVLPPIRAMKSMQG 64

Query: 67  RVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPISKM 126
           RVVCAT+DKTVAVEV RLAPHPKYKRR+R KKKYQAHDP N+FKVGDFV+LEK RPISK 
Sbjct: 65  RVVCATSDKTVAVEVTRLAPHPKYKRRVRKKKKYQAHDPLNQFKVGDFVQLEKGRPISKT 124

Query: 127 KTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQ 159
           KTFLA+PV  RN  PKA E    ELG+ LES +Q
Sbjct: 125 KTFLAVPVVGRN-VPKAKELVPQELGLKLESDQQ 156

[Close]
BLAST of CmoCh17G007610 vs. TAIR10
Match: AT1G79850.1 (AT1G79850.1 ribosomal protein S17)

HSP 1 Score: 171.8 bits (434), Expect = 3.4e-43
Identity = 93/141 (65.96%), Postives = 114/141 (80.85%), Query Frame = 1 

Query: 18  LKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAV 77
           L+ L +S+ F HGS PLS LSKP+ S    + P  +P I+AM+++QGRVVCAT+DKTVAV
Sbjct: 10  LQALKLSSPFAHGSTPLSSLSKPN-SFPNHRMPALVPVIRAMKTMQGRVVCATSDKTVAV 69

Query: 78  EVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNS 137
           EVVRLAPHPKYKRR+R+KKKYQAHDPDN+FKVGD V LEK RPISK K+F+A+PV AR +
Sbjct: 70  EVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKSRPISKTKSFVALPVIARAA 129

Query: 138 KPKAAEAGAGE-LGIPLESQE 158
             + AEAG  E LG+PLESQ+
Sbjct: 130 --RKAEAGGDELLGLPLESQQ 147

[Close]
BLAST of CmoCh17G007610 vs. TAIR10
Match: AT1G49400.1 (AT1G49400.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 48.9 bits (115), Expect = 3.3e-06
Identity = 32/88 (36.36%), Postives = 47/88 (53.41%), Query Frame = 1 

Query: 59  MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKC 118
           M+ + G VV     K+V V V RL  +  Y R ++   K+ AHD  +   +GD V+L+  
Sbjct: 1   MKPVIGTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDDKDACNIGDRVKLDPS 60

Query: 119 RPISKMKTFLAIPV--PARNSKPKAAEA 145
           RP+SK K ++   +   AR   PKAA A
Sbjct: 61  RPLSKNKHWIVAEIIKKARIYSPKAAAA 88

[Close]
BLAST of CmoCh17G007610 vs. NCBI nr
Match: gi|659124452|ref|XP_008462167.1| (PREDICTED: 30S ribosomal protein S17, chloroplastic [Cucumis melo])

HSP 1 Score: 257.7 bits (657), Expect = 1.3e-65
Identity = 138/160 (86.25%), Postives = 145/160 (90.62%), Query Frame = 1 

Query: 2   SALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPS--PSLSASQTPNFLPSIKAM 61
           + L+ SS LQIPPLQ LK LSIS+SFLHGS PLSFLSKPS  PS  ASQTPNFLPSI+AM
Sbjct: 3   TTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKPSSSPSPLASQTPNFLPSIRAM 62

Query: 62  RSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCR 121
           RSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDN+FKVGDFVELEKCR
Sbjct: 63  RSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCR 122

Query: 122 PISKMKTFLAIPVPARNSKPKAAEAG-AGELGIPLESQEQ 159
           PISKMKTFLAIPVPAR SK KAAE G  GELGIPLESQ++
Sbjct: 123 PISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQE 162

[Close]
BLAST of CmoCh17G007610 vs. NCBI nr
Match: gi|449448022|ref|XP_004141765.1| (PREDICTED: 30S ribosomal protein S17, chloroplastic [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 3.3e-64
Identity = 135/158 (85.44%), Postives = 143/158 (90.51%), Query Frame = 1 

Query: 4   LSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSA--SQTPNFLPSIKAMRS 63
           L+ SS LQIPP+Q LK LSIS+SFLHGS PLSFLSKPS S S   SQTPNFLPSI+AMRS
Sbjct: 5   LTSSSLLQIPPVQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPFPSQTPNFLPSIRAMRS 64

Query: 64  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPI 123
           LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDN+F+VGDFVELEKCRPI
Sbjct: 65  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFQVGDFVELEKCRPI 124

Query: 124 SKMKTFLAIPVPARNSKPKAAEAG-AGELGIPLESQEQ 159
           SKMKTFLAIPVPARNSK KA E G  GELGIPLESQ++
Sbjct: 125 SKMKTFLAIPVPARNSKKKAVEGGEGGELGIPLESQQE 162

[Close]
BLAST of CmoCh17G007610 vs. NCBI nr
Match: gi|703104735|ref|XP_010098081.1| (30S ribosomal protein S17 [Morus notabilis])

HSP 1 Score: 206.8 bits (525), Expect = 2.7e-50
Identity = 109/160 (68.12%), Postives = 129/160 (80.62%), Query Frame = 1 

Query: 7   SSFLQIPPLQRLK-------NLSISTSFLHGSVPLSFLSKPSPSLS--ASQTPNFLPSIK 66
           +S L +PPL  LK         + +T FLHGS+PLS LSKPS SL+   S  PNFLP I+
Sbjct: 5   ASLLHLPPLHSLKLSSSTTPTTTTTTHFLHGSIPLSLLSKPSSSLTNPTSCPPNFLPPIR 64

Query: 67  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEK 126
           AMRSLQGRVVCAT+DKTVAVEV+RLAPHPKYKRR+R KKK+QAHDPDN+FKVGD+V+LEK
Sbjct: 65  AMRSLQGRVVCATSDKTVAVEVLRLAPHPKYKRRVRKKKKFQAHDPDNQFKVGDYVQLEK 124

Query: 127 CRPISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQE 158
            RPISK KTF+A+PVPARNS+ K A+  + ELGIPLESQ+
Sbjct: 125 SRPISKTKTFVAVPVPARNSRKKDADGESAELGIPLESQQ 164

[Close]
BLAST of CmoCh17G007610 vs. NCBI nr
Match: gi|719994125|ref|XP_010254084.1| (PREDICTED: 30S ribosomal protein S17, chloroplastic [Nelumbo nucifera])

HSP 1 Score: 200.3 bits (508), Expect = 2.5e-48
Identity = 109/159 (68.55%), Postives = 130/159 (81.76%), Query Frame = 1 

Query: 1   MSALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQT--PNFLPSIKA 60
           M   SPSS LQ+PPL   K+L IS+ FL+GS P+  L+KPS SLS S    P+FLP I+A
Sbjct: 1   MLLTSPSSLLQLPPL---KSLKISSPFLYGSTPVRLLNKPSSSLSPSNPSPPSFLPPIRA 60

Query: 61  MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKC 120
           M+SLQGRVVCATNDKTVAVEVVRLAPHPKYKRR+R KKK+QAHDP+N+FKVGDFV+LEK 
Sbjct: 61  MKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRVRKKKKFQAHDPENRFKVGDFVQLEKS 120

Query: 121 RPISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQE 158
           +PISK K F+AIPV A+N+ PK+ EA   ELGIPLES++
Sbjct: 121 KPISKTKAFIAIPVTAKNA-PKSTEALPQELGIPLESEK 155

[Close]
BLAST of CmoCh17G007610 vs. NCBI nr
Match: gi|1009112335|ref|XP_015867702.1| (PREDICTED: 30S ribosomal protein S17, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 199.5 bits (506), Expect = 4.3e-48
Identity = 110/159 (69.18%), Postives = 127/159 (79.87%), Query Frame = 1 

Query: 9   FLQIPPLQRLKNLSIS--TSFLHGSVPLSFLSKPSPSL--SASQTPNFLPSIKAMRSLQG 68
           FLQ+PPL  LK  S +  TSFLHGS PLS LSKP+  +    S+ P+FLP+I+AMRSLQG
Sbjct: 7   FLQLPPLHSLKLSSSTPTTSFLHGSTPLSQLSKPNSCVIHPVSKPPSFLPTIRAMRSLQG 66

Query: 69  RVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPISKM 128
           +VVCATNDKTVAVEV RLAPHPKYKRR+R KKKYQAHDPDN+FKVGD V+LE+ +PISK 
Sbjct: 67  KVVCATNDKTVAVEVTRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDIVQLEESKPISKT 126

Query: 129 KTFLAIPVPARNSKPKAAEA----GAGELGIPLESQEQV 160
           KTFLAIPVP RNS  K A A    G  +LGIPLESQ+Q+
Sbjct: 127 KTFLAIPVPKRNSNSKNAVAEEDDGTQQLGIPLESQQQL 165

The following BLAST results are available for this feature:
BLAST of CmoCh17G007610 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RR17_ARATH6.1e-4265.9630S ribosomal protein S17, chloroplastic OS=Arabidopsis thaliana GN=RPS17 PE=1 S... [more]
RR17_PEA6.1e-3456.7230S ribosomal protein S17, chloroplastic (Fragment) OS=Pisum sativum GN=RPS17 PE... [more]
RR17_MAIZE8.5e-2858.2730S ribosomal protein S17, chloroplastic OS=Zea mays GN=RPS17 PE=2 SV=1[more]
RR17_ORYSJ1.5e-2764.0830S ribosomal protein S17, chloroplastic OS=Oryza sativa subsp. japonica GN=RPS1... [more]
RS17_RHOSK3.5e-1350.7030S ribosomal protein S17 OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085)... [more]
BLAST of CmoCh17G007610 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K952_CUCSA2.3e-6485.44Uncharacterized protein OS=Cucumis sativus GN=Csa_7G446990 PE=3 SV=1[more]
W9RUW3_9ROSA1.9e-5068.1330S ribosomal protein S17 OS=Morus notabilis GN=L484_026214 PE=3 SV=1[more]
D7U0I2_VITVI8.3e-4670.07Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g04330 PE=3 SV=... [more]
A0A061GAC0_THECC1.4e-4568.31Ribosomal protein S17 OS=Theobroma cacao GN=TCM_028766 PE=3 SV=1[more]
A0A068TRN2_COFCA9.1e-4567.53Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021991001 PE=3 SV=1[more]
BLAST of CmoCh17G007610 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G79850.13.4e-4365.96 ribosomal protein S17[more]
AT1G49400.13.3e-0636.36 Nucleic acid-binding, OB-fold-like protein[more]
BLAST of CmoCh17G007610 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659124452|ref|XP_008462167.1|1.3e-6586.25PREDICTED: 30S ribosomal protein S17, chloroplastic [Cucumis melo][more]
gi|449448022|ref|XP_004141765.1|3.3e-6485.44PREDICTED: 30S ribosomal protein S17, chloroplastic [Cucumis sativus][more]
gi|703104735|ref|XP_010098081.1|2.7e-5068.1330S ribosomal protein S17 [Morus notabilis][more]
gi|719994125|ref|XP_010254084.1|2.5e-4868.55PREDICTED: 30S ribosomal protein S17, chloroplastic [Nelumbo nucifera][more]
gi|1009112335|ref|XP_015867702.1|4.3e-4869.18PREDICTED: 30S ribosomal protein S17, chloroplastic [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000266Ribosomal_S17/S11
IPR012340NA-bd_OB-fold
IPR019979Ribosomal_S17_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032544 plastid translation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0000312 plastid small ribosomal subunit
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G007610.1CmoCh17G007610.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000266Ribosomal protein S17/S11PRODOMPD001295coord: 60..130
score: 6.0
IPR000266Ribosomal protein S17/S11PRINTSPR00973RIBOSOMALS17coord: 78..101
score: 2.3E-8coord: 110..120
score: 2.3E-8coord: 120..127
score: 2.
IPR000266Ribosomal protein S17/S11HAMAPMF_01345_BRibosomal_S17_Bcoord: 57..135
score: 18
IPR000266Ribosomal protein S17/S11PANTHERPTHR1074440S RIBOSOMAL PROTEIN S11 FAMILY MEMBERcoord: 50..154
score: 7.8
IPR000266Ribosomal protein S17/S11PFAMPF00366Ribosomal_S17coord: 64..127
score: 1.1
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 59..139
score: 3.9
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 59..136
score: 1.46
IPR019979Ribosomal protein S17, conserved sitePROSITEPS00056RIBOSOMAL_S17coord: 110..122
scor
NoneNo IPR availablePANTHERPTHR10744:SF730S RIBOSOMAL PROTEIN S17, CHLOROPLASTICcoord: 50..154
score: 7.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh17G007610CmaCh17G007930Cucurbita maxima (Rimu)cmacmoB353
CmoCh17G007610CmaCh08G007060Cucurbita maxima (Rimu)cmacmoB897
CmoCh17G007610Cla015452Watermelon (97103) v1cmowmB322
CmoCh17G007610Csa7G446990Cucumber (Chinese Long) v2cmocuB378
CmoCh17G007610MELO3C024255Melon (DHL92) v3.5.1cmomeB318
CmoCh17G007610ClCG09G001940Watermelon (Charleston Gray)cmowcgB299
CmoCh17G007610CSPI07G21510Wild cucumber (PI 183967)cmocpiB381
CmoCh17G007610Lsi02G028020Bottle gourd (USVL1VR-Ls)cmolsiB337
CmoCh17G007610Cp4.1LG12g08050Cucurbita pepo (Zucchini)cmocpeB335
CmoCh17G007610Cp4.1LG17g05620Cucurbita pepo (Zucchini)cmocpeB339
CmoCh17G007610MELO3C024255.2Melon (DHL92) v3.6.1cmomedB365
CmoCh17G007610CsaV3_7G033420Cucumber (Chinese Long) v3cmocucB0455
CmoCh17G007610Cla97C09G164070Watermelon (97103) v2cmowmbB370
CmoCh17G007610Bhi09G000139Wax gourdcmowgoB0491
CmoCh17G007610CsGy7G019840Cucumber (Gy14) v2cgybcmoB909
CmoCh17G007610Carg09518Silver-seed gourdcarcmoB1376
CmoCh17G007610Carg18788Silver-seed gourdcarcmoB1015
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh17G007610CmoCh08G006720Cucurbita moschata (Rifu)cmocmoB320
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh17G007610Cucumber (Chinese Long) v3cmocucB0422
CmoCh17G007610Watermelon (97103) v2cmowmbB365
CmoCh17G007610Wax gourdcmowgoB0473
CmoCh17G007610Cucurbita moschata (Rifu)cmocmoB060
CmoCh17G007610Cucurbita moschata (Rifu)cmocmoB098
CmoCh17G007610Cucurbita moschata (Rifu)cmocmoB195
CmoCh17G007610Cucurbita moschata (Rifu)cmocmoB299
CmoCh17G007610Cucumber (Gy14) v1cgycmoB0986
CmoCh17G007610Cucurbita maxima (Rimu)cmacmoB086
CmoCh17G007610Cucurbita maxima (Rimu)cmacmoB134
CmoCh17G007610Cucurbita maxima (Rimu)cmacmoB249
CmoCh17G007610Cucurbita maxima (Rimu)cmacmoB466
CmoCh17G007610Wild cucumber (PI 183967)cmocpiB355
CmoCh17G007610Cucumber (Chinese Long) v2cmocuB350
CmoCh17G007610Melon (DHL92) v3.5.1cmomeB325
CmoCh17G007610Watermelon (Charleston Gray)cmowcgB329
CmoCh17G007610Watermelon (97103) v1cmowmB335
CmoCh17G007610Cucurbita pepo (Zucchini)cmocpeB361
CmoCh17G007610Cucurbita pepo (Zucchini)cmocpeB362
CmoCh17G007610Bottle gourd (USVL1VR-Ls)cmolsiB349
CmoCh17G007610Cucumber (Gy14) v2cgybcmoB318
CmoCh17G007610Melon (DHL92) v3.6.1cmomedB373
CmoCh17G007610Silver-seed gourdcarcmoB0164
CmoCh17G007610Silver-seed gourdcarcmoB0284