Cp4.1LG12g07180 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g07180
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPentatricopeptide repeat-containing protein, putative
LocationCp4.1LG12 : 7041163 .. 7045066 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGCGGTTCCGTGGCGCCCGGTACCTTCACTTTCTCCCATATAAAAGGGTCTCGTAGTTCAAATTGTAGCCCAAATTCCACCGCCCAGCCGAGCCCTCTGTATCTCACAGTCGCGTACATGAATTCATGGCATGTCTTTCTTCTATTGCAAGAGGGCTCTCCAGAAACTCTCCATTGCCATTTCGTCAACTCCTTCAGCTCATCAATTTCCAAATTCCCGATTCGCCCTTTCAGGCATTTCATCAAACACTTCACCTGCCTTCTCAGTCCGCTCGTCAATTCTCAGCACTTCCATTCTGTTCTCAAAAAGTTGCCCACCCATTTCACTTTGACACAGTAAGATTCCAAAACCATCGCCCAAACGATGCGCGAAGTGCCCAATTCGTCGAATTGCTTAAACGGGCTGCCCGTTTGCCCTCGGAAGTGGAGGCTATTGCTGCGTTGGGCGAGTTTGATGTCCAGGCAGATCCGAATTTGGTGTACTCCGCAATTTGGGTGTTGAGGGATGATTGGAAATCGTCATTTCTAGCCTTCAAATGGGGTGAGAAGTGGGGATCTATTGACGAAGAAATTTGTAATTTGATGATATGGGTGTTGGGCAATCATAAGAAATTCAGTACTGCTTGGTGTTTGATTAGAGAATTTCATGGATCCTTGTTGAATTCGAGGCAAGCGATGCTTGTCATGATTGATAGGTAAAATTTATTTTCGCATATCTCCATTTACTCTGACATTTCTTTTTGCATTCTGTCATGCCATTTGTAATGACTAGCGAAAACGTTTTTGCATTTTGATTTTACTCGATAAGTTAAGACATAGTCTAAGTAACGTGGAAACCATGTAAGAGTCCAAAACCTAGTTACCGATATTGTCTTCTTTGTGCTTTGCTTTTGGGCGTCACTCAAAGTTTTTAAAACTCATTTGCTAGGGAGAGGTTTCCACACCCTTAGGAGTGTTTCGTTTCCCTCTCCAACCGATGTGGGATCTCATAATCCGCCTTATCTCTATAAGGCGATCTCACAATCCACCCCTCTTTAGGGCCTAGCGTTCTCGCTGGTACACTGCCCGGTGTCCACCCCTTTGGTCTTAACATCCTCGTTGGCACACCGTCTGGTGTCTAGCTTTGATACCATTTGTAACAGTCCAAGCCCACCGTTAGCAGATATTGTCCTCTTTGGGATTCCCTTTTCGGGCTCTCCCTCAAGGTTTTTAAAACGCATCTGCTAGGGAGAGGTTTTCACACCCTTATAAATAATGTTTCGTTCTCCTCTTCAACTGATGTGGAGTCTAACAATTCACCCCCGAGGATCTCACAAATCAAGTTTGTGAACGAAAATGGCCTGCTTCAACAAGCTTATATGTAAATGAGTCTTTGTCTATGTATGTGCGTGTGAGGTTTTCCATGAGCAAGAAGCTTTTGGTTGAAACTGGAGTAGCATTTCATTTTTAATTTGTGTATTCTATTAGATTGAAGGATGGCCAACATATATCTGTGAGATACAGAAAAGGCTTTTTTTGATGCATTCTGTTAATTCGTTTCTTAATGGCTTGAAGGGAGATTAACATCCATAGTTACTTTTGAAAATTGCATACTGTTAACAAGGTTGTTCCTGGATTAAGGTATGCACACGCAAATGAGGCAAGTAAGGCCATTAAGACATTCCACATGATGGAGAAGTTCAGATTGACTCCGGATCAAGAGGCTTTTCATGCCCTCCTCAATTCTCTCTGTAAATATGGGAACATCGAAGAGGCTGAAGAGTTTATGCTTGTAAACAAGAAGCTTTTTCCTTTGGAAACAGAAAGCTTCAACATTATTCTCAATGGCTGGTGCAATGTATCTGTTGATGTGTTTGAAGCGAAGAGAATTTGGAGAGAAATGTCTAAATGTTGTATTTTGCCGGATTCAACTTCTTACACCCTCATGATTTCCTGTTTTTCGAGGACCGGGAACCTTTTCGACTCGCTTAGACTCTATGATGAGATGAAGAAAAGGGATTGGATTCCAAGCCTTGAAGTCTATAATTCTTTAGCTTATGTGTTGACCCGGGAGAATTGTTTCAGTGAAGCTCTCAAAATCCTTGAGAAAATAAAAGAAGTAGGCTTACAGCCCGACTGCACGACATACAACTCGCTTATACGTCCTCTGTGTGAGGTCGGAAAGCTGGATGAAGCAAAAGATGTACTGACCAAGATGACTGACGACAATATCAGCCCGACGATCGAAACCTACCATTCTTTTATTCAAGGAGCAGATTCTGAAACGAGCTTTGAACTTCTTAAGCAGATGAGACAAAATGGTTTAGGTCCTACAGAGGCTACCTTTGTTATAATGTTTAACAAGTCATTTGAACTTGAACAACCGGATTATGCGTTGAAAGCGTGGGCAGAAATGAAGCGGTACGAGATATCACCTAACTCCGAACATTACGCAGTCTTGGTACAAGGCTTAGCAACATATGGTCTGTTAAAACAGGCCAGAGAATTATATGACCAAATGACATCACATGGATATATCTTACATCCAAAGATTAAAATGCTCGTGAAGGAACCCGAGTTACGTAGCATCGAAGAAGCAACGCAGCAAGTGAGACATAACAAGAAGGGCAAGTTTTTTCATAGAAAAGGGAGCATGATGAGATGGAAATCACATAAACAACAATCTCGAGACGACGCATCGTTTGAGTAGGTAACTTATCTATATATATGCTACTTGAATAGATTTCAATTGAATCATGTTCTTTATTCTGCTAGTATTGTATACGAGATGAGCTGTTTTTCTACTTGGTTCTGGTGTGAGTGGAAGGATTTACTACAATCTTAACCTTATAGCAGAAACCATCTGGCTTTTATGGAGTTTGGTATTAGAAGCATTGGGGTTTGAACTTTTCTCAATCCTTCCAGTCAGCTCCTTTTAAGCCACAAGTTTATGTTCTTGCAAAACAAACAGGGTGGTTCATGGGTGCATTCACTTTAGGATTATATTGCTGGTCTTTGATTAGATCTTGTTGGGATGTGAACGTAGTTCCACATCGGTTAGAAATATACACGATCCCAAGGACAACATCATATTAGGATGAATCGTTGCCCCCAACAAATGAAATTCTCATCTCTTTCATTGAATGGAGGATGACTTTGAAATCTTTTAGTCACCTTATTTATATTTACCCATAGGAGGAGAAACCCGAAAGAGAAAGTCCAAAGAGGACAATATTTGCTTGCGGTGGGCTTGGGCAGTTACAAATGATATCAGAGCTAGACACCGGCCGATGTGCCAACGAGGAGGCCGAGCCCCAAAGGGGGGTGGATTGGGGTCCCACATCGATTAATGGTTCTACATTTAGGTAGATTCTGAAGATTCTGGATATATAGTTAGTGTTGCTTTTGATTTTAACAGCTTTTTGATGGTTCATAGTCGAAACTTTTGACTGTCCGTCTTGTCTGAATCCTTGGTCTGGTAAAGGAATAAGAATTCATTGTGAAAGCTACTGAAAAAGCATTCATTCCTTCCCATTGGCGCAAAGCTCGAAGAGAACACACGCATGGGCTAGTAACAAGAACAATACGACACCGTTTTCTTTTTTCTCATTTGAAGGCATAGGCAGGCTGTTTGGTGGTTGGATGACGAGAAAGGTTAATTCCCGGTAGCCCTTTATGTAGCTTCCTTTGTTGGAATTGGCCATTACAAAAGGTCCTAAACTCACTTGAAGGACTACCTTTTCAAGCATGGATAATGTTTCAAGGAAAGAGAATTTAGAGAATATTTTGAGTTCCTATAAATTAAAGTTAAAAAGCTTTTGTTTTTCCTTGGATTGTATGGATGGAAAAACCTTCTATTTCCGTCAAATGACCCGGCCTCCCCGGACTCTTCCACCGTCCAGGCTACCTTTCCTGTCTATGCTAT

mRNA sequence

TGGCGGTTCCGTGGCGCCCGGTACCTTCACTTTCTCCCATATAAAAGGGTCTCGTAGTTCAAATTGTAGCCCAAATTCCACCGCCCAGCCGAGCCCTCTGTATCTCACAGTCGCGTACATGAATTCATGGCATGTCTTTCTTCTATTGCAAGAGGGCTCTCCAGAAACTCTCCATTGCCATTTCGTCAACTCCTTCAGCTCATCAATTTCCAAATTCCCGATTCGCCCTTTCAGGCATTTCATCAAACACTTCACCTGCCTTCTCAGTCCGCTCGTCAATTCTCAGCACTTCCATTCTGTTCTCAAAAAGTTGCCCACCCATTTCACTTTGACACAGTAAGATTCCAAAACCATCGCCCAAACGATGCGCGAAGTGCCCAATTCGTCGAATTGCTTAAACGGGCTGCCCGTTTGCCCTCGGAAGTGGAGGCTATTGCTGCGTTGGGCGAGTTTGATGTCCAGGCAGATCCGAATTTGGTGTACTCCGCAATTTGGGTGTTGAGGGATGATTGGAAATCGTCATTTCTAGCCTTCAAATGGGGTGAGAAGTGGGGATCTATTGACGAAGAAATTTGTAATTTGATGATATGGGTGTTGGGCAATCATAAGAAATTCAGTACTGCTTGGTGTTTGATTAGAGAATTTCATGGATCCTTGTTGAATTCGAGGCAAGCGATGCTTGTCATGATTGATAGGTATGCACACGCAAATGAGGCAAGTAAGGCCATTAAGACATTCCACATGATGGAGAAGTTCAGATTGACTCCGGATCAAGAGGCTTTTCATGCCCTCCTCAATTCTCTCTGTAAATATGGGAACATCGAAGAGGCTGAAGAGTTTATGCTTGTAAACAAGAAGCTTTTTCCTTTGGAAACAGAAAGCTTCAACATTATTCTCAATGGCTGGTGCAATGTATCTGTTGATGTGTTTGAAGCGAAGAGAATTTGGAGAGAAATGTCTAAATGTTGTATTTTGCCGGATTCAACTTCTTACACCCTCATGATTTCCTGTTTTTCGAGGACCGGGAACCTTTTCGACTCGCTTAGACTCTATGATGAGATGAAGAAAAGGGATTGGATTCCAAGCCTTGAAGTCTATAATTCTTTAGCTTATGTGTTGACCCGGGAGAATTGTTTCAGTGAAGCTCTCAAAATCCTTGAGAAAATAAAAGAAGTAGGCTTACAGCCCGACTGCACGACATACAACTCGCTTATACGTCCTCTGTGTGAGGTCGGAAAGCTGGATGAAGCAAAAGATGTACTGACCAAGATGACTGACGACAATATCAGCCCGACGATCGAAACCTACCATTCTTTTATTCAAGGAGCAGATTCTGAAACGAGCTTTGAACTTCTTAAGCAGATGAGACAAAATGGTTTAGGTCCTACAGAGGCTACCTTTGTTATAATGTTTAACAAGTCATTTGAACTTGAACAACCGGATTATGCGTTGAAAGCGTGGGCAGAAATGAAGCGGTACGAGATATCACCTAACTCCGAACATTACGCAGTCTTGGTACAAGGCTTAGCAACATATGGTCTGTTAAAACAGGCCAGAGAATTATATGACCAAATGACATCACATGGATATATCTTACATCCAAAGATTAAAATGCTCGTGAAGGAACCCGAGTTACGTAGCATCGAAGAAGCAACGCAGCAAGTGAGACATAACAAGAAGGGCAAGTTTTTTCATAGAAAAGGGAGCATGATGAGATGGAAATCACATAAACAACAATCTCGAGACGACGCATCGTTTGAGTAGGTAACTTATCTATATATATGCTACTTGAATAGATTTCAATTGAATCATGTTCTTTATTCTGCTAGTATTGTATACGAGATGAGCTGTTTTTCTACTTGGTTCTGGTGTGAGTGGAAGGATTTACTACAATCTTAACCTTATAGCAGAAACCATCTGGCTTTTATGGAGTTTGGTATTAGAAGCATTGGGGTTTGAACTTTTCTCAATCCTTCCAGTCAGCTCCTTTTAAGCCACAAGTTTATGTTCTTGCAAAACAAACAGGGTGGTTCATGGGTGCATTCACTTTAGGATTATATTGCTGGTCTTTGATTAGATCTTGTTGGGATGTGAACGTAGTTCCACATCGGTTAGAAATATACACGATCCCAAGGACAACATCATATTAGGATGAATCGTTGCCCCCAACAAATGAAATTCTCATCTCTTTCATTGAATGGAGGATGACTTTGAAATCTTTTAGTCACCTTATTTATATTTACCCATAGGAGGAGAAACCCGAAAGAGAAAGTCCAAAGAGGACAATATTTGCTTGCGGTGGGCTTGGGCAGTTACAAATGATATCAGAGCTAGACACCGGCCGATGTGCCAACGAGGAGGCCGAGCCCCAAAGGGGGGTGGATTGGGGTCCCACATCGATTAATGGTTCTACATTTAGGTAGATTCTGAAGATTCTGGATATATAGTTAGTGTTGCTTTTGATTTTAACAGCTTTTTGATGGTTCATAGTCGAAACTTTTGACTGTCCGTCTTGTCTGAATCCTTGGTCTGGTAAAGGAATAAGAATTCATTGTGAAAGCTACTGAAAAAGCATTCATTCCTTCCCATTGGCGCAAAGCTCGAAGAGAACACACGCATGGGCTAGTAACAAGAACAATACGACACCGTTTTCTTTTTTCTCATTTGAAGGCATAGGCAGGCTGTTTGGTGGTTGGATGACGAGAAAGGTTAATTCCCGGTAGCCCTTTATGTAGCTTCCTTTGTTGGAATTGGCCATTACAAAAGGTCCTAAACTCACTTGAAGGACTACCTTTTCAAGCATGGATAATGTTTCAAGGAAAGAGAATTTAGAGAATATTTTGAGTTCCTATAAATTAAAGTTAAAAAGCTTTTGTTTTTCCTTGGATTGTATGGATGGAAAAACCTTCTATTTCCGTCAAATGACCCGGCCTCCCCGGACTCTTCCACCGTCCAGGCTACCTTTCCTGTCTATGCTAT

Coding sequence (CDS)

ATGGCATGTCTTTCTTCTATTGCAAGAGGGCTCTCCAGAAACTCTCCATTGCCATTTCGTCAACTCCTTCAGCTCATCAATTTCCAAATTCCCGATTCGCCCTTTCAGGCATTTCATCAAACACTTCACCTGCCTTCTCAGTCCGCTCGTCAATTCTCAGCACTTCCATTCTGTTCTCAAAAAGTTGCCCACCCATTTCACTTTGACACAGTAAGATTCCAAAACCATCGCCCAAACGATGCGCGAAGTGCCCAATTCGTCGAATTGCTTAAACGGGCTGCCCGTTTGCCCTCGGAAGTGGAGGCTATTGCTGCGTTGGGCGAGTTTGATGTCCAGGCAGATCCGAATTTGGTGTACTCCGCAATTTGGGTGTTGAGGGATGATTGGAAATCGTCATTTCTAGCCTTCAAATGGGGTGAGAAGTGGGGATCTATTGACGAAGAAATTTGTAATTTGATGATATGGGTGTTGGGCAATCATAAGAAATTCAGTACTGCTTGGTGTTTGATTAGAGAATTTCATGGATCCTTGTTGAATTCGAGGCAAGCGATGCTTGTCATGATTGATAGGTATGCACACGCAAATGAGGCAAGTAAGGCCATTAAGACATTCCACATGATGGAGAAGTTCAGATTGACTCCGGATCAAGAGGCTTTTCATGCCCTCCTCAATTCTCTCTGTAAATATGGGAACATCGAAGAGGCTGAAGAGTTTATGCTTGTAAACAAGAAGCTTTTTCCTTTGGAAACAGAAAGCTTCAACATTATTCTCAATGGCTGGTGCAATGTATCTGTTGATGTGTTTGAAGCGAAGAGAATTTGGAGAGAAATGTCTAAATGTTGTATTTTGCCGGATTCAACTTCTTACACCCTCATGATTTCCTGTTTTTCGAGGACCGGGAACCTTTTCGACTCGCTTAGACTCTATGATGAGATGAAGAAAAGGGATTGGATTCCAAGCCTTGAAGTCTATAATTCTTTAGCTTATGTGTTGACCCGGGAGAATTGTTTCAGTGAAGCTCTCAAAATCCTTGAGAAAATAAAAGAAGTAGGCTTACAGCCCGACTGCACGACATACAACTCGCTTATACGTCCTCTGTGTGAGGTCGGAAAGCTGGATGAAGCAAAAGATGTACTGACCAAGATGACTGACGACAATATCAGCCCGACGATCGAAACCTACCATTCTTTTATTCAAGGAGCAGATTCTGAAACGAGCTTTGAACTTCTTAAGCAGATGAGACAAAATGGTTTAGGTCCTACAGAGGCTACCTTTGTTATAATGTTTAACAAGTCATTTGAACTTGAACAACCGGATTATGCGTTGAAAGCGTGGGCAGAAATGAAGCGGTACGAGATATCACCTAACTCCGAACATTACGCAGTCTTGGTACAAGGCTTAGCAACATATGGTCTGTTAAAACAGGCCAGAGAATTATATGACCAAATGACATCACATGGATATATCTTACATCCAAAGATTAAAATGCTCGTGAAGGAACCCGAGTTACGTAGCATCGAAGAAGCAACGCAGCAAGTGAGACATAACAAGAAGGGCAAGTTTTTTCATAGAAAAGGGAGCATGATGAGATGGAAATCACATAAACAACAATCTCGAGACGACGCATCGTTTGAGTAG

Protein sequence

MACLSSIARGLSRNSPLPFRQLLQLINFQIPDSPFQAFHQTLHLPSQSARQFSALPFCSQKVAHPFHFDTVRFQNHRPNDARSAQFVELLKRAARLPSEVEAIAALGEFDVQADPNLVYSAIWVLRDDWKSSFLAFKWGEKWGSIDEEICNLMIWVLGNHKKFSTAWCLIREFHGSLLNSRQAMLVMIDRYAHANEASKAIKTFHMMEKFRLTPDQEAFHALLNSLCKYGNIEEAEEFMLVNKKLFPLETESFNIILNGWCNVSVDVFEAKRIWREMSKCCILPDSTSYTLMISCFSRTGNLFDSLRLYDEMKKRDWIPSLEVYNSLAYVLTRENCFSEALKILEKIKEVGLQPDCTTYNSLIRPLCEVGKLDEAKDVLTKMTDDNISPTIETYHSFIQGADSETSFELLKQMRQNGLGPTEATFVIMFNKSFELEQPDYALKAWAEMKRYEISPNSEHYAVLVQGLATYGLLKQARELYDQMTSHGYILHPKIKMLVKEPELRSIEEATQQVRHNKKGKFFHRKGSMMRWKSHKQQSRDDASFE
Homology
[Close]
BLAST of Cp4.1LG12g07180 vs. Swiss-Prot
Match: PP137_ARATH (Pentatricopeptide repeat-containing protein At1g80880, mitochondrial OS=Arabidopsis thaliana GN=At1g80880 PE=2 SV=1)

HSP 1 Score: 493.4 bits (1269), Expect = 3.1e-138
Identity = 225/423 (53.19%), Postives = 320/423 (75.65%), Query Frame = 1 

Query: 87  VELLKRAARLPSEVEAIAALGEFDVQADPNLVYSAIWVLRDDWKSSFLAFKWGEKWGSID 146
           ++L+++ + L SE +A+A+L +     + +  YS IW LRD+W+ +FLAFKWGEK G  D
Sbjct: 95  IDLIRQVSELESEADAMASLEDSSFDLNHDSFYSLIWELRDEWRLAFLAFKWGEKRGCDD 154

Query: 147 EEICNLMIWVLGNHKKFSTAWCLIREFHGSLLNSRQAMLVMIDRYAHANEASKAIKTFHM 206
           ++ C+LMIWVLGNH+KF+ AWCLIR+      ++R+AM +M+DRYA AN+ S+AI+TF +
Sbjct: 155 QKSCDLMIWVLGNHQKFNIAWCLIRDMFNVSKDTRKAMFLMMDRYAAANDTSQAIRTFDI 214

Query: 207 MEKFRLTPDQEAFHALLNSLCKYGNIEEAEEFMLVNKKLFPLETESFNIILNGWCNVSVD 266
           M+KF+ TP  EAF  LL +LC++G+IE+AEEFML +KKLFP++ E FN+ILNGWCN+  D
Sbjct: 215 MDKFKHTPYDEAFQGLLCALCRHGHIEKAEEFMLASKKLFPVDVEGFNVILNGWCNIWTD 274

Query: 267 VFEAKRIWREMSKCCILPDSTSYTLMISCFSRTGNLFDSLRLYDEMKKRDWIPSLEVYNS 326
           V EAKRIWREM   CI P+  SY+ MISCFS+ GNLFDSLRLYDEMKKR   P +EVYNS
Sbjct: 275 VTEAKRIWREMGNYCITPNKDSYSHMISCFSKVGNLFDSLRLYDEMKKRGLAPGIEVYNS 334

Query: 327 LAYVLTRENCFSEALKILEKIKEVGLQPDCTTYNSLIRPLCEVGKLDEAKDVLTKMTDDN 386
           L YVLTRE+CF EA+K+++K+ E GL+PD  TYNS+IRPLCE GKLD A++VL  M  +N
Sbjct: 335 LVYVLTREDCFDEAMKLMKKLNEEGLKPDSVTYNSMIRPLCEAGKLDVARNVLATMISEN 394

Query: 387 ISPTIETYHSFIQGADSETSFELLKQMRQNGLGPTEATFVIMFNKSFELEQPDYALKAWA 446
           +SPT++T+H+F++  + E + E+L QM+ + LGPTE TF+++  K F+ +QP+ ALK WA
Sbjct: 395 LSPTVDTFHAFLEAVNFEKTLEVLGQMKISDLGPTEETFLLILGKLFKGKQPENALKIWA 454

Query: 447 EMKRYEISPNSEHYAVLVQGLATYGLLKQARELYDQMTSHGYILHPKIKMLVKEPELRSI 506
           EM R+EI  N   Y   +QGL + G L++ARE+Y +M S G++ +P ++ L++E +++ +
Sbjct: 455 EMDRFEIVANPALYLATIQGLLSCGWLEKAREIYSEMKSKGFVGNPMLQKLLEEQKVKGV 514

Query: 507 EEA 510
            ++
Sbjct: 515 RKS 517

[Close]
BLAST of Cp4.1LG12g07180 vs. Swiss-Prot
Match: PP383_ARATH (Pentatricopeptide repeat-containing protein At5g15010, mitochondrial OS=Arabidopsis thaliana GN=At5g15010 PE=2 SV=2)

HSP 1 Score: 278.1 bits (710), Expect = 2.1e-73
Identity = 148/389 (38.05%), Postives = 227/389 (58.35%), Query Frame = 1 

Query: 106 LGEFDVQADPNLVYSAIWVLRDDWKSSFLAFKWGEKWGSIDEEI--CNLMIWVLGNHKKF 165
           L E DV+    LV   +  +R+DW+++F  F W  K       +   + MI +LG  +KF
Sbjct: 118 LEECDVKPSNELVVEILSRVRNDWETAFTFFVWAGKQQGYVRSVREYHSMISILGKMRKF 177

Query: 166 STAWCLI---REFHGSLLNSRQAMLVMIDRYAHANEASKAIKTFHMMEKFRLTPDQEAFH 225
            TAW LI   R+F  SL+NS Q +L+MI +Y   ++  KAI TFH  ++F+L    + F 
Sbjct: 178 DTAWTLIDEMRKFSPSLVNS-QTLLIMIRKYCAVHDVGKAINTFHAYKRFKLEMGIDDFQ 237

Query: 226 ALLNSLCKYGNIEEAEEFMLVNKKLFPLETESFNIILNGWCNVSVDVFEAKRIWREMSKC 285
           +LL++LC+Y N+ +A   +  NK  +P + +SFNI+LNGWCNV     EA+R+W EM   
Sbjct: 238 SLLSALCRYKNVSDAGHLIFCNKDKYPFDAKSFNIVLNGWCNVIGSPREAERVWMEMGNV 297

Query: 286 CILPDSTSYTLMISCFSRTGNLFDSLRLYDEMKKRDWIPSLEVYNSLAYVLTRENCFSEA 345
            +  D  SY+ MISC+S+ G+L   L+L+D MKK    P  +VYN++ + L + +  SEA
Sbjct: 298 GVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECIEPDRKVYNAVVHALAKASFVSEA 357

Query: 346 LKILEKI-KEVGLQPDCTTYNSLIRPLCEVGKLDEAKDVLTKMTDDNISPTIETYHSFIQ 405
             +++ + +E G++P+  TYNSLI+PLC+  K +EAK V  +M +  + PTI TYH+F++
Sbjct: 358 RNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFDEMLEKGLFPTIRTYHAFMR 417

Query: 406 -GADSETSFELLKQMRQNGLGPTEATFVIMFNKSFELEQPDYALKAWAEMKRYEISPNSE 465
                E  FELL +MR+ G  PT  T++++  K       D  L  W EMK   + P+  
Sbjct: 418 ILRTGEEVFELLAKMRKMGCEPTVETYIMLIRKLCRWRDFDNVLLLWDEMKEKTVGPDLS 477

Query: 466 HYAVLVQGLATYGLLKQARELYDQMTSHG 488
            Y V++ GL   G +++A   Y +M   G
Sbjct: 478 SYIVMIHGLFLNGKIEEAYGYYKEMKDKG 505

[Close]
BLAST of Cp4.1LG12g07180 vs. Swiss-Prot
Match: PP275_ARATH (Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 3.4e-44
Identity = 105/398 (26.38%), Postives = 192/398 (48.24%), Query Frame = 1 

Query: 105 ALGEFDVQADPNLVYSAIWVLRDDWKSSFLAFKWGEKWGSI--DEEICNLMIWVLGNHKK 164
           AL E  +   P L+   +    D     +  F W  K        E+C  M+ +L   ++
Sbjct: 87  ALNESGIDLRPGLIIRVLSRCGDAGNLGYRFFLWATKQPGYFHSYEVCKSMVMILSKMRQ 146

Query: 165 FSTAWCLIREFHGSL--LNSRQAMLVMIDRYAHANEASKAIKTFHMMEKFRLTPDQEAFH 224
           F   W LI E   +   L   +  +V++ R+A AN   KA++    M K+ L PD+  F 
Sbjct: 147 FGAVWGLIEEMRKTNPELIEPELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFG 206

Query: 225 ALLNSLCKYGNIEEAEEFMLVNKKLFPLETESFNIILNGWCNVSVDVFEAKRIWREMSKC 284
            LL++LCK G+++EA +     ++ FP     F  +L GWC     + EAK +  +M + 
Sbjct: 207 CLLDALCKNGSVKEASKVFEDMREKFPPNLRYFTSLLYGWCREG-KLMEAKEVLVQMKEA 266

Query: 285 CILPDSTSYTLMISCFSRTGNLFDSLRLYDEMKKRDWIPSLEVYNSLAYVLTR-ENCFSE 344
            + PD   +T ++S ++  G + D+  L ++M+KR + P++  Y  L   L R E    E
Sbjct: 267 GLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDE 326

Query: 345 ALKILEKIKEVGLQPDCTTYNSLIRPLCEVGKLDEAKDVLTKMTDDNISPTIETYHSFIQ 404
           A+++  +++  G + D  TY +LI   C+ G +D+   VL  M    + P+  TY   + 
Sbjct: 327 AMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMV 386

Query: 405 GADSETSF----ELLKQMRQNGLGPTEATFVIMFNKSFELEQPDYALKAWAEMKRYEISP 464
             + +  F    EL+++M++ G  P    + ++   + +L +   A++ W EM+   +SP
Sbjct: 387 AHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSP 446

Query: 465 NSEHYAVLVQGLATYGLLKQARELYDQMTSHGYILHPK 494
             + + +++ G  + G L +A   + +M S G    P+
Sbjct: 447 GVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSAPQ 483

[Close]
BLAST of Cp4.1LG12g07180 vs. Swiss-Prot
Match: PP447_ARATH (Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.7e-43
Identity = 109/426 (25.59%), Postives = 206/426 (48.36%), Query Frame = 1 

Query: 75  NHRPNDARSAQFVELLKRAARLPSEVEAIA-----ALGEFDVQADPNLVYSAIWVLRDDW 134
           N R  +++  +F   ++++ R+  +  +       AL E  V+  P L+   +    D  
Sbjct: 68  NDRTKNSKYDEFASDVEKSYRILRKFHSRVPKLELALNESGVELRPGLIERVLNRCGDAG 127

Query: 135 KSSFLAFKWGEKWGSIDE--EICNLMIWVLGNHKKFSTAWCLIREFH--GSLLNSRQAML 194
              +  F W  K        E+   M+ +L   ++F   W LI E       L   +  +
Sbjct: 128 NLGYRFFVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFV 187

Query: 195 VMIDRYAHANEASKAIKTFHMMEKFRLTPDQEAFHALLNSLCKYGNIEEAEEFMLVNKKL 254
           V++ R+A A+   KAI+    M KF   PD+  F  LL++LCK+G++++A +     +  
Sbjct: 188 VLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMR 247

Query: 255 FPLETESFNIILNGWCNVSVDVFEAKRIWREMSKCCILPDSTSYTLMISCFSRTGNLFDS 314
           FP+    F  +L GWC V   + EAK +  +M++    PD   YT ++S ++  G + D+
Sbjct: 248 FPVNLRYFTSLLYGWCRVG-KMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADA 307

Query: 315 LRLYDEMKKRDWIPSLEVYNSLAYVLTRENCFSEALKILEKIKEVGLQPDCTTYNSLIRP 374
             L  +M++R + P+   Y  L   L + +   EA+K+  +++    + D  TY +L+  
Sbjct: 308 YDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSG 367

Query: 375 LCEVGKLDEAKDVLTKMTDDNISPTIETYHSFIQGADSETSF----ELLKQMRQNGLGPT 434
            C+ GK+D+   VL  M    + P+  TY   +   + + SF    EL+++MRQ    P 
Sbjct: 368 FCKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPD 427

Query: 435 EATFVIMFNKSFELEQPDYALKAWAEMKRYEISPNSEHYAVLVQGLATYGLLKQARELYD 488
              + ++   + +L +   A++ W EM+   +SP  + + +++ GLA+ G L +A + + 
Sbjct: 428 IGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFK 487

[Close]
BLAST of Cp4.1LG12g07180 vs. Swiss-Prot
Match: PP233_ARATH (Putative pentatricopeptide repeat-containing protein At3g15200 OS=Arabidopsis thaliana GN=At3g15200 PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 3.6e-41
Identity = 113/434 (26.04%), Postives = 213/434 (49.08%), Query Frame = 1 

Query: 80  DARSAQFVELLKRAARLPSEVEAIAALGEFDVQADPNLVYSAIWVLRDDWKSSFLAFKWG 139
           D +SA  V  + +  R  S  +    L +  +     LV   +   R DWK +++  +  
Sbjct: 74  DKQSALDVHNIIKHHRGSSPEKIKRILDKCGIDLTEELVLEVVNRNRSDWKPAYILSQLV 133

Query: 140 EKWGS--IDEEICNLMIWVLGNHKKFSTAWCLIREFHGSL--LNSRQAML------VMID 199
            K         + N ++ VLG  ++F        EFH     ++ R   +      V+++
Sbjct: 134 VKQSVHLSSSMLYNEILDVLGKMRRFE-------EFHQVFDEMSKRDGFVNEKTYEVLLN 193

Query: 200 RYAHANEASKAIKTFHMMEKFRLTPDQEAFHALLNSLCKYGNIEEAEEFMLVNKKLFPLE 259
           RYA A++  +A+  F   ++F +  D  AFH LL  LC+Y ++E AE      ++ F  +
Sbjct: 194 RYAAAHKVDEAVGVFERRKEFGIDDDLVAFHGLLMWLCRYKHVEFAETLFCSRRREFGCD 253

Query: 260 TESFNIILNGWCNVSVDVFEAKRIWREMSKCCILPDSTSYTLMISCFSRTGNLFDSLRLY 319
            ++ N+ILNGWC V  +V EAKR W+++      PD  SY  MI+  ++ G L  ++ LY
Sbjct: 254 IKAMNMILNGWC-VLGNVHEAKRFWKDIIASKCRPDVVSYGTMINALTKKGKLGKAMELY 313

Query: 320 DEMKKRDWIPSLEVYNSLAYVLTRENCFSEALKILEKIKEVGLQPDCTTYNSLIRPLCEV 379
             M      P +++ N++   L  +    EAL++  +I E G  P+  TYNSL++ LC++
Sbjct: 314 RAMWDTRRNPDVKICNNVIDALCFKKRIPEALEVFREISEKGPDPNVVTYNSLLKHLCKI 373

Query: 380 GKLDEAKDVLTKM--TDDNISPTIETYHSFIQGADSETSFEL-LKQMRQNGLGPTEATFV 439
            + ++  +++ +M     + SP   T+   ++ +      ++ L++M +N    T   + 
Sbjct: 374 RRTEKVWELVEEMELKGGSCSPNDVTFSYLLKYSQRSKDVDIVLERMAKNKCEMTSDLYN 433

Query: 440 IMFNKSFELEQPDYALKAWAEMKRYEISPNSEHYAVLVQGLATYGLLKQARELYDQMTSH 499
           +MF    + ++ +   + W+EM+R  + P+   Y + + GL T G + +A   + +M S 
Sbjct: 434 LMFRLYVQWDKEEKVREIWSEMERSGLGPDQRTYTIRIHGLHTKGKIGEALSYFQEMMSK 493

Query: 500 GYILHPKIKMLVKE 501
           G +  P+ +ML+ +
Sbjct: 494 GMVPEPRTEMLLNQ 499

[Close]
BLAST of Cp4.1LG12g07180 vs. TrEMBL
Match: A0A0A0K678_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G431960 PE=4 SV=1)

HSP 1 Score: 887.5 bits (2292), Expect = 8.3e-255
Identity = 442/546 (80.95%), Postives = 479/546 (87.73%), Query Frame = 1 

Query: 1   MACLSSIARGLSRNSPLPFRQLLQLINFQIPDSPFQAFHQTLHLPSQSARQFSALPFCSQ 60
           MA LSSIAR L R  PLPF  LL L   +IPDSPFQAFHQT  L S  ARQFSALP  SQ
Sbjct: 1   MASLSSIARRLCRIHPLPFHHLLYLNRLRIPDSPFQAFHQTFSLHSFFARQFSALPSFSQ 60

Query: 61  KVAHPFHFDTVRFQNHRPNDARSAQFVELLKRAARLPSEVEAIAALGEFDVQADPNLVYS 120
           K+  PF FDT RFQN+R +DA +A+F+EL KR A LPSEVEA+AAL EFDV+AD +LVYS
Sbjct: 61  KLGDPFLFDTGRFQNYRQSDACNARFIELFKRVALLPSEVEAVAALDEFDVKADLDLVYS 120

Query: 121 AIWVLRDDWKSSFLAFKWGEKWGSIDEEICNLMIWVLGNHKKFSTAWCLIREFHGSLLNS 180
           AIWVLRDDWKSS LAFKWGEK G+IDEEICNLMIWVLGNHKKFSTAW LIRE HGSLLNS
Sbjct: 121 AIWVLRDDWKSSLLAFKWGEKVGAIDEEICNLMIWVLGNHKKFSTAWSLIRELHGSLLNS 180

Query: 181 RQAMLVMIDRYAHANEASKAIKTFHMMEKFRLTPDQEAFHALLNSLCKYGNIEEAEEFML 240
            QAMLVMIDRYA+ANEASKAIKTFHMMEKFRLTPDQEAFH LLNSLCKYGNIEEAEEFM 
Sbjct: 181 MQAMLVMIDRYAYANEASKAIKTFHMMEKFRLTPDQEAFHVLLNSLCKYGNIEEAEEFMF 240

Query: 241 VNKKLFPLETESFNIILNGWCNVSVDVFEAKRIWREMSKCCILPDSTSYTLMISCFSRTG 300
           VNKKLFPL TESFNIILNGWCNV+VDVFEAKRIWREMSKCCILPDSTSYT MISCFS+ G
Sbjct: 241 VNKKLFPLGTESFNIILNGWCNVTVDVFEAKRIWREMSKCCILPDSTSYTHMISCFSKNG 300

Query: 301 NLFDSLRLYDEMKKRDWIPSLEVYNSLAYVLTRENCFSEALKILEKIKEVGLQPDCTTYN 360
           NLFDSLR YD+MKKRDWIPS+EVYNSLAYVLTRENCF+EALKILEKIKEVGL+PD TTYN
Sbjct: 301 NLFDSLRFYDQMKKRDWIPSVEVYNSLAYVLTRENCFNEALKILEKIKEVGLRPDSTTYN 360

Query: 361 SLIRPLCEVGKLDEAKDVLTKMTDDNISPTIETYHSFIQGADSETSFELLKQMRQNGLGP 420
           SLI PLCE GKLDEAKDVLT MT+DNISPTIETYHSFIQ ADS+ SFELLK+MRQ+GLGP
Sbjct: 361 SLISPLCEAGKLDEAKDVLTMMTEDNISPTIETYHSFIQAADSKMSFELLKRMRQDGLGP 420

Query: 421 TEATFVIMFNKSFELEQPDYALKAWAEMKRYEISPNSEHYAVLVQGLATYGLLKQARELY 480
           TE TF+IMFNKSFELE+P+YAL  W EMKRYE+ P+ EHY+VL+QGLAT G LK+ARELY
Sbjct: 421 TEGTFLIMFNKSFELEEPEYALNVWVEMKRYEVFPSCEHYSVLIQGLATCGHLKKARELY 480

Query: 481 DQMTSHGYILHPKIKMLVKEPELRSIEEATQQVRHNKKGKFF-HRKGSMMRWKSHKQQSR 540
           D+M  HG+I HPKIK L+KEP+L SI+EA QQVRHN KGKF  HRKG  MRWKSHKQ+S+
Sbjct: 481 DEMILHGFIAHPKIKTLLKEPDLGSIDEARQQVRHNNKGKFIPHRKGRTMRWKSHKQRSK 540

Query: 541 DDASFE 546
             ASFE
Sbjct: 541 GAASFE 546

[Close]
BLAST of Cp4.1LG12g07180 vs. TrEMBL
Match: U5GND9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s03510g PE=4 SV=1)

HSP 1 Score: 599.0 bits (1543), Expect = 5.9e-168
Identity = 303/543 (55.80%), Postives = 388/543 (71.45%), Query Frame = 1 

Query: 4   LSSIARGLSRNSPLPFRQLLQLINFQIPDSPFQ----------AFHQTLHLPSQSARQFS 63
           L +IAR L  +       LL  I +  P SP             FH+TL +P++S   FS
Sbjct: 3   LLTIARRLQISHSRLLFPLLYSITYPHPPSPSNNSNYPIFFSVEFHRTLSIPTRSPHHFS 62

Query: 64  -ALPFCSQKVAHPFHFDTVRFQNHRPNDARSAQFVELLKRAARLPSEVEAIAALGEFDVQ 123
            +  F +Q +   F       Q H P        ++ LK AA LPSE EA+A+L E  ++
Sbjct: 63  TSQSFSTQYLNVSFELIQQGIQTHEP---LQMGLLQSLKMAAHLPSEAEAMASLDESGIR 122

Query: 124 ADPNLVYSAIWVLRDDWKSSFLAFKWGEKWGSIDEEICNLMIWVLGNHKKFSTAWCLIRE 183
           A+ NLVYS IW LR++W+ +FLAFKWG+KWG +DE+ C LM+WVLGNH+KF+TAW LIR+
Sbjct: 123 ANQNLVYSVIWELREEWRLAFLAFKWGDKWGCVDEKACELMVWVLGNHRKFNTAWILIRD 182

Query: 184 FHGSLLNSRQAMLVMIDRYAHANEASKAIKTFHMMEKFRLTPDQEAFHALLNSLCKYGNI 243
            H SL+++R+AML+MIDRYA AN   KAI  F +M+KFR+TPD+EAF+ LLN LCK GNI
Sbjct: 183 LHRSLMSTRKAMLIMIDRYAAANVPGKAIYAFRIMDKFRMTPDEEAFYFLLNVLCKNGNI 242

Query: 244 EEAEEFMLVNKKLFPLETESFNIILNGWCNVSVDVFEAKRIWREMSKCCILPDSTSYTLM 303
           EEAEEFMLVNKK FPLE E FNIILNGWCN+ VDVFEAKRIWREMSK CI PD+T+YT M
Sbjct: 243 EEAEEFMLVNKKFFPLEVEGFNIILNGWCNICVDVFEAKRIWREMSKYCIDPDATTYTHM 302

Query: 304 ISCFSRTGNLFDSLRLYDEMKKRDWIPSLEVYNSLAYVLTRENCFSEALKILEKIKEVGL 363
           ISCFS+ GNLFDSLRLYD MKKR W+P +EVYNSL Y+LTRENCF EALKIL+K+KE GL
Sbjct: 303 ISCFSKVGNLFDSLRLYDGMKKRGWVPGIEVYNSLVYILTRENCFKEALKILDKMKETGL 362

Query: 364 QPDCTTYNSLIRPLCEVGKLDEAKDVLTKMTDDNISPTIETYHSFIQGADSETSFELLKQ 423
           Q D  TYNS+IRPLCE  KL++A+ ++  M ++N+SPTIETYH+F+QG   E +FE+L +
Sbjct: 363 QRDSATYNSMIRPLCEAKKLEDARSLMAAMIEENVSPTIETYHAFLQGIVFEETFEVLDR 422

Query: 424 MRQNGLGPTEATFVIMFNKSFELEQPDYALKAWAEMKRYEISPNSEHYAVLVQGLATYGL 483
           M+  GLGPTE TF+++  K F+LEQP+ ALK W EMK+YE++ N  HY V+V+GLA  GL
Sbjct: 423 MKIAGLGPTEDTFLLLLAKFFKLEQPENALKIWVEMKQYEVASNLTHYTVMVEGLARCGL 482

Query: 484 LKQARELYDQMTSHGYILHPKIKMLVKEPELRSIEEATQQVRHNKKGKFF-HRKGSMMRW 535
           L +ARE Y +M S+GY   PKI+ ++K P     ++  +     K+ +   H+KGSM+R 
Sbjct: 483 LTKAREYYAEMRSNGYSDDPKIQKMLKVPVQDKNDKRKKLGGQFKRNQHVSHKKGSMVRR 542

[Close]
BLAST of Cp4.1LG12g07180 vs. TrEMBL
Match: A0A067LCX9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26977 PE=4 SV=1)

HSP 1 Score: 577.8 bits (1488), Expect = 1.4e-161
Identity = 289/526 (54.94%), Postives = 382/526 (72.62%), Query Frame = 1 

Query: 4   LSSIARGLSRNSPLPFRQLLQLINFQIPDSPFQ---------AFHQTLHLPSQSARQFSA 63
           L +IAR L R+ P+    L Q I    P SP +         AFH+T+ +P  ++ +FS 
Sbjct: 3   LITIARRLQRSYPIHVLPLFQSI--ASPSSPSRLPLKSFFLAAFHRTVSIPDSNSLRFST 62

Query: 64  LP-FCSQKVAHPFHFDTVRFQNHRPNDARSAQFVELLKRAARLPSEVEAIAALGEFDVQA 123
              F +Q    PF  D ++ + H  N+A     ++ LKRAA  P+E EA+A + E  + A
Sbjct: 63  SQYFPTQNFKEPF--DLIQQRIH-VNEALEPSLLDSLKRAAHSPTEAEAVAFVDESGITA 122

Query: 124 DPNLVYSAIWVLRDDWKSSFLAFKWGEKWGSIDEEICNLMIWVLGNHKKFSTAWCLIREF 183
           + NLVYS IW LR++W+ ++LA+KWG+KWG +DE+ C LM+WVLG+HKKF+ AW LIR+ 
Sbjct: 123 NQNLVYSLIWNLREEWRQAYLAYKWGQKWGCVDEKCCELMVWVLGSHKKFNIAWILIRDL 182

Query: 184 HGSLLNSRQAMLVMIDRYAHANEASKAIKTFHMMEKFRLTPDQEAFHALLNSLCKYGNIE 243
           + SL+N RQAMLVMIDRYA AN   KAI+ F +MEKFRL PD+EAF+ LLN+LCK+GNIE
Sbjct: 183 YRSLMNPRQAMLVMIDRYAAANCPGKAIEAFDVMEKFRLAPDEEAFYTLLNALCKHGNIE 242

Query: 244 EAEEFMLVNKKLFPLETESFNIILNGWCNVSVDVFEAKRIWREMSKCCILPDSTSYTLMI 303
           EAEEFML+NKKLFPL TE FNIILNGWCN+ VDV EAKR+WREMSKCCI PDSTSYT MI
Sbjct: 243 EAEEFMLINKKLFPLGTEGFNIILNGWCNICVDVLEAKRVWREMSKCCITPDSTSYTHMI 302

Query: 304 SCFSRTGNLFDSLRLYDEMKKRDWIPSLEVYNSLAYVLTRENCFSEALKILEKIKEVGLQ 363
           +CFS+ GNLFDSLRLYDEMKKR ++P + VYN L YVLT ENCF  ALK++EK+KE GLQ
Sbjct: 303 TCFSKVGNLFDSLRLYDEMKKRGFVPGIVVYNCLIYVLTHENCFEAALKVVEKMKEHGLQ 362

Query: 364 PDCTTYNSLIRPLCEVGKLDEAKDVLTKMTDDNISPTIETYHSFIQGADSETSFELLKQM 423
           PD TT+NS+I  LCE  +L EA+++L  M ++NI PT+ETYH+ +QG   E + E+L QM
Sbjct: 363 PDSTTFNSIIHSLCERQRLAEARNILAMMVEENICPTMETYHAVLQGTGFEETLEILDQM 422

Query: 424 RQNGLGPTEATFVIMFNKSFELEQPDYALKAWAEMKRYEISPNSEHYAVLVQGLATYGLL 483
             +GL PT+ TF+++  K F+LEQPD ALK W EMK+YE++PN+ HY VLV+GLA YGLL
Sbjct: 423 IISGLAPTKDTFLLILVKFFKLEQPDNALKIWVEMKQYEVTPNATHYRVLVEGLARYGLL 482

Query: 484 KQARELYDQMTSHGYILHPKIKMLVKEPELRSI--EEATQQVRHNK 518
            +A+E Y  M S+G+   PK++ ++K  + +    ++  +QVR ++
Sbjct: 483 TKAQEYYADMKSNGFSDDPKLQKILKPTKAQKCKGKKWVRQVRRDQ 523

[Close]
BLAST of Cp4.1LG12g07180 vs. TrEMBL
Match: B9RGM1_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1442060 PE=4 SV=1)

HSP 1 Score: 570.9 bits (1470), Expect = 1.7e-159
Identity = 289/547 (52.83%), Postives = 387/547 (70.75%), Query Frame = 1 

Query: 1   MACLSSIARGLSRNSPLPFRQLLQLIN-----FQIPDSPF-----QAFHQTLHLPSQSAR 60
           M+ L SI   L R+ P  F  LL+        + +  +PF      AFH+T  +P  ++ 
Sbjct: 1   MSSLISIGIRLRRSHPKLFYPLLRSTASPFSFYPLKLNPFVSLFYAAFHRTASVPFLNSL 60

Query: 61  QFS-ALPFCSQKVAHPFHFDTVRFQNHRPNDARSAQFVELLKRAARLPSEVEAIAALGEF 120
           +FS +  F SQ   +PF     R  NH P    +   +E LKRAA  P E EA+A +   
Sbjct: 61  RFSGSQSFSSQNQKYPFELFEHRIYNHDP---LTQGLLETLKRAAYFPGEAEAMACIDGS 120

Query: 121 DVQADPNLVYSAIWVLRDDWKSSFLAFKWGEKWGSIDEEICNLMIWVLGNHKKFSTAWCL 180
            V+A+ NLVYS IW LR DWK +FL FKWGEKWG IDE+ C L++W+LGNH+KF+ AW +
Sbjct: 121 GVKANINLVYSVIWELRKDWKLAFLGFKWGEKWGCIDEKSCELIVWILGNHRKFNNAWIV 180

Query: 181 IREFHGSLLNSRQAMLVMIDRYAHANEASKAIKTFHMMEKFRLTPDQEAFHALLNSLCKY 240
           IR+ H   +N +Q ML+MIDRYA A+   KAI+ F++MEKF++ PD+EAF++L+N+LC +
Sbjct: 181 IRDMHQLSMNIQQTMLIMIDRYAAADNPGKAIEVFNIMEKFKMAPDEEAFYSLMNALCNH 240

Query: 241 GNIEEAEEFMLVNKKLFPLETESFNIILNGWCNVSVDVFEAKRIWREMSKCCILPDSTSY 300
           G IEEAEEFM+VNKKLFPLETE FN+ILNGWC++ V++ EAKR+WREMSKCCI P++TSY
Sbjct: 241 GYIEEAEEFMVVNKKLFPLETEGFNVILNGWCSICVNLLEAKRVWREMSKCCITPNATSY 300

Query: 301 TLMISCFSRTGNLFDSLRLYDEMKKRDWIPSLEVYNSLAYVLTRENCFSEALKILEKIKE 360
           T MISCFS+ GNLFDSLRLYDEMKKR W+P +EVYNSL YVLTRENCF EAL+ L+K+KE
Sbjct: 301 THMISCFSKVGNLFDSLRLYDEMKKRGWLPGMEVYNSLIYVLTRENCFKEALRFLDKMKE 360

Query: 361 VGLQPDCTTYNSLIRPLCEVGKLDEAKDVLTKMTDDNISPTIETYHSF--IQGADSETSF 420
           VGLQPD TTYNS+IRPLCE  KL EA+ VL  M ++NISPT+ETYH+   ++ +D E + 
Sbjct: 361 VGLQPDSTTYNSMIRPLCEGKKLVEARSVLATMIEENISPTMETYHALLEVENSDFEATL 420

Query: 421 ELLKQMRQNGLGPTEATFVIMFNKSFELEQPDYALKAWAEMKRYEISPNSEHYAVLVQGL 480
           E+L +M   GL PT+ TF+++  K F+LEQ + ALK W EMK+YE++PN  HY +LV+GL
Sbjct: 421 EVLNRMTVAGLAPTDDTFLLVLAKFFKLEQAENALKMWIEMKQYEVTPNLTHYKILVEGL 480

Query: 481 ATYGLLKQARELYDQMTSHGYILHPKIKMLVKEP-ELRSIEEATQQVRHNKKGKFFHRKG 534
              GLL +ARE Y  M S+G+   PK++ ++KEP   ++ +E   + +  + G   H++ 
Sbjct: 481 VRCGLLAKARECYADMRSNGFTDDPKLQKMLKEPVRGQNSKEKLCKGQVKRDGHVNHKRR 540

[Close]
BLAST of Cp4.1LG12g07180 vs. TrEMBL
Match: W9QV67_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018066 PE=4 SV=1)

HSP 1 Score: 565.8 bits (1457), Expect = 5.5e-158
Identity = 278/471 (59.02%), Postives = 350/471 (74.31%), Query Frame = 1 

Query: 36  QAFHQTLHLPSQSAR---QFSALPFCSQKV-AHPFHFDTVRFQNHRPNDARSA-QFVELL 95
           QAFH+T  +P +S+     FS L     K    P  F+   FQ H   D       V+ L
Sbjct: 45  QAFHRTHFIPFRSSPPQLHFSTLQHQPPKTNPDPLDFNAGTFQTHDLQDHPGLLHVVKSL 104

Query: 96  KRAARLPSEVEAIAALGEFDVQADPNLVYSAIWVLRDDWKSSFLAFKWGEKWGSIDEEIC 155
           ++ A  P+E EA+++L E  V+  P LV SAIWVLR+DW+ +FLAFKWGEKW   DEE  
Sbjct: 105 EKVAHFPTEAEAMSSLEESCVEVSPELVRSAIWVLREDWRVAFLAFKWGEKWDCCDEEAW 164

Query: 156 NLMIWVLGNHKKFSTAWCLIREFHGSLLNSRQAMLVMIDRYAHANEASKAIKTFHMMEKF 215
            LM+WVLG+H+KF+TAWCLIR+ H S +++R+AMLVMIDRYA AN+  KAI  FH MEKF
Sbjct: 165 ILMVWVLGSHRKFNTAWCLIRDLHRSSMDTRRAMLVMIDRYACANDPDKAIWAFHFMEKF 224

Query: 216 RLTPDQEAFHALLNSLCKYGNIEEAEEFMLVNKKLFPLETESFNIILNGWCNVSVDVFEA 275
            LTPDQEAF   LN+LCK+G IE+AEEFMLVNKKLFPLETE FNIILNGWCN+SVD+ EA
Sbjct: 225 SLTPDQEAFCIALNALCKHGYIEKAEEFMLVNKKLFPLETEGFNIILNGWCNISVDLSEA 284

Query: 276 KRIWREMSKCCILPDSTSYTLMISCFSRTGNLFDSLRLYDEMKKRDWIPSLEVYNSLAYV 335
           KR+WREMSKCCI P++TSYT MI C S+ GNLFDSLRLYDEMKKR W+PS++VYNSL +V
Sbjct: 285 KRVWREMSKCCIEPNATSYTHMIHCLSKDGNLFDSLRLYDEMKKRGWLPSIKVYNSLIFV 344

Query: 336 LTRENCFSEALKILEKIKEVGLQPDCTTYNSLIRPLCEVGKLDEAKDVLTKMTDDNISPT 395
           LTRENCF EALKIL+K++E GLQPD TTYNS+I PLC+  KLDEA+++L  M  +NI PT
Sbjct: 345 LTRENCFKEALKILQKLRESGLQPDATTYNSMISPLCKARKLDEARNMLVTMLGENIGPT 404

Query: 396 IETYHSFIQGADSETSFELLKQMRQNGLGPTEATFVIMFNKSFELEQPDYALKAWAEMKR 455
            ETYH+F++  + E + E+L +M++  LGP+  TF ++  K F++EQ + ALK W EMKR
Sbjct: 405 TETYHAFLEIVEFEETLEVLSRMKKAKLGPSRETFGMVLEKFFKVEQAENALKIWEEMKR 464

Query: 456 YEISPNSEHYAVLVQGLATYGLLKQARELYDQMTSHGYILHPKIKMLVKEP 502
           Y++ P+S HY +++QGLAT GL  +ARE    M S G+I  PK+K LVKEP
Sbjct: 465 YDVVPDSAHYTIMLQGLATCGLFTKAREFLAAMRSDGFIEDPKVKKLVKEP 515

[Close]
BLAST of Cp4.1LG12g07180 vs. TAIR10
Match: AT1G80880.1 (AT1G80880.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 493.4 bits (1269), Expect = 1.8e-139
Identity = 225/423 (53.19%), Postives = 320/423 (75.65%), Query Frame = 1 

Query: 87  VELLKRAARLPSEVEAIAALGEFDVQADPNLVYSAIWVLRDDWKSSFLAFKWGEKWGSID 146
           ++L+++ + L SE +A+A+L +     + +  YS IW LRD+W+ +FLAFKWGEK G  D
Sbjct: 95  IDLIRQVSELESEADAMASLEDSSFDLNHDSFYSLIWELRDEWRLAFLAFKWGEKRGCDD 154

Query: 147 EEICNLMIWVLGNHKKFSTAWCLIREFHGSLLNSRQAMLVMIDRYAHANEASKAIKTFHM 206
           ++ C+LMIWVLGNH+KF+ AWCLIR+      ++R+AM +M+DRYA AN+ S+AI+TF +
Sbjct: 155 QKSCDLMIWVLGNHQKFNIAWCLIRDMFNVSKDTRKAMFLMMDRYAAANDTSQAIRTFDI 214

Query: 207 MEKFRLTPDQEAFHALLNSLCKYGNIEEAEEFMLVNKKLFPLETESFNIILNGWCNVSVD 266
           M+KF+ TP  EAF  LL +LC++G+IE+AEEFML +KKLFP++ E FN+ILNGWCN+  D
Sbjct: 215 MDKFKHTPYDEAFQGLLCALCRHGHIEKAEEFMLASKKLFPVDVEGFNVILNGWCNIWTD 274

Query: 267 VFEAKRIWREMSKCCILPDSTSYTLMISCFSRTGNLFDSLRLYDEMKKRDWIPSLEVYNS 326
           V EAKRIWREM   CI P+  SY+ MISCFS+ GNLFDSLRLYDEMKKR   P +EVYNS
Sbjct: 275 VTEAKRIWREMGNYCITPNKDSYSHMISCFSKVGNLFDSLRLYDEMKKRGLAPGIEVYNS 334

Query: 327 LAYVLTRENCFSEALKILEKIKEVGLQPDCTTYNSLIRPLCEVGKLDEAKDVLTKMTDDN 386
           L YVLTRE+CF EA+K+++K+ E GL+PD  TYNS+IRPLCE GKLD A++VL  M  +N
Sbjct: 335 LVYVLTREDCFDEAMKLMKKLNEEGLKPDSVTYNSMIRPLCEAGKLDVARNVLATMISEN 394

Query: 387 ISPTIETYHSFIQGADSETSFELLKQMRQNGLGPTEATFVIMFNKSFELEQPDYALKAWA 446
           +SPT++T+H+F++  + E + E+L QM+ + LGPTE TF+++  K F+ +QP+ ALK WA
Sbjct: 395 LSPTVDTFHAFLEAVNFEKTLEVLGQMKISDLGPTEETFLLILGKLFKGKQPENALKIWA 454

Query: 447 EMKRYEISPNSEHYAVLVQGLATYGLLKQARELYDQMTSHGYILHPKIKMLVKEPELRSI 506
           EM R+EI  N   Y   +QGL + G L++ARE+Y +M S G++ +P ++ L++E +++ +
Sbjct: 455 EMDRFEIVANPALYLATIQGLLSCGWLEKAREIYSEMKSKGFVGNPMLQKLLEEQKVKGV 514

Query: 507 EEA 510
            ++
Sbjct: 515 RKS 517

[Close]
BLAST of Cp4.1LG12g07180 vs. TAIR10
Match: AT5G15010.1 (AT5G15010.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 278.1 bits (710), Expect = 1.2e-74
Identity = 148/389 (38.05%), Postives = 227/389 (58.35%), Query Frame = 1 

Query: 106 LGEFDVQADPNLVYSAIWVLRDDWKSSFLAFKWGEKWGSIDEEI--CNLMIWVLGNHKKF 165
           L E DV+    LV   +  +R+DW+++F  F W  K       +   + MI +LG  +KF
Sbjct: 118 LEECDVKPSNELVVEILSRVRNDWETAFTFFVWAGKQQGYVRSVREYHSMISILGKMRKF 177

Query: 166 STAWCLI---REFHGSLLNSRQAMLVMIDRYAHANEASKAIKTFHMMEKFRLTPDQEAFH 225
            TAW LI   R+F  SL+NS Q +L+MI +Y   ++  KAI TFH  ++F+L    + F 
Sbjct: 178 DTAWTLIDEMRKFSPSLVNS-QTLLIMIRKYCAVHDVGKAINTFHAYKRFKLEMGIDDFQ 237

Query: 226 ALLNSLCKYGNIEEAEEFMLVNKKLFPLETESFNIILNGWCNVSVDVFEAKRIWREMSKC 285
           +LL++LC+Y N+ +A   +  NK  +P + +SFNI+LNGWCNV     EA+R+W EM   
Sbjct: 238 SLLSALCRYKNVSDAGHLIFCNKDKYPFDAKSFNIVLNGWCNVIGSPREAERVWMEMGNV 297

Query: 286 CILPDSTSYTLMISCFSRTGNLFDSLRLYDEMKKRDWIPSLEVYNSLAYVLTRENCFSEA 345
            +  D  SY+ MISC+S+ G+L   L+L+D MKK    P  +VYN++ + L + +  SEA
Sbjct: 298 GVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECIEPDRKVYNAVVHALAKASFVSEA 357

Query: 346 LKILEKI-KEVGLQPDCTTYNSLIRPLCEVGKLDEAKDVLTKMTDDNISPTIETYHSFIQ 405
             +++ + +E G++P+  TYNSLI+PLC+  K +EAK V  +M +  + PTI TYH+F++
Sbjct: 358 RNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFDEMLEKGLFPTIRTYHAFMR 417

Query: 406 -GADSETSFELLKQMRQNGLGPTEATFVIMFNKSFELEQPDYALKAWAEMKRYEISPNSE 465
                E  FELL +MR+ G  PT  T++++  K       D  L  W EMK   + P+  
Sbjct: 418 ILRTGEEVFELLAKMRKMGCEPTVETYIMLIRKLCRWRDFDNVLLLWDEMKEKTVGPDLS 477

Query: 466 HYAVLVQGLATYGLLKQARELYDQMTSHG 488
            Y V++ GL   G +++A   Y +M   G
Sbjct: 478 SYIVMIHGLFLNGKIEEAYGYYKEMKDKG 505

[Close]
BLAST of Cp4.1LG12g07180 vs. TAIR10
Match: AT3G49730.1 (AT3G49730.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 181.0 bits (458), Expect = 1.9e-45
Identity = 105/398 (26.38%), Postives = 192/398 (48.24%), Query Frame = 1 

Query: 105 ALGEFDVQADPNLVYSAIWVLRDDWKSSFLAFKWGEKWGSI--DEEICNLMIWVLGNHKK 164
           AL E  +   P L+   +    D     +  F W  K        E+C  M+ +L   ++
Sbjct: 87  ALNESGIDLRPGLIIRVLSRCGDAGNLGYRFFLWATKQPGYFHSYEVCKSMVMILSKMRQ 146

Query: 165 FSTAWCLIREFHGSL--LNSRQAMLVMIDRYAHANEASKAIKTFHMMEKFRLTPDQEAFH 224
           F   W LI E   +   L   +  +V++ R+A AN   KA++    M K+ L PD+  F 
Sbjct: 147 FGAVWGLIEEMRKTNPELIEPELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFG 206

Query: 225 ALLNSLCKYGNIEEAEEFMLVNKKLFPLETESFNIILNGWCNVSVDVFEAKRIWREMSKC 284
            LL++LCK G+++EA +     ++ FP     F  +L GWC     + EAK +  +M + 
Sbjct: 207 CLLDALCKNGSVKEASKVFEDMREKFPPNLRYFTSLLYGWCREG-KLMEAKEVLVQMKEA 266

Query: 285 CILPDSTSYTLMISCFSRTGNLFDSLRLYDEMKKRDWIPSLEVYNSLAYVLTR-ENCFSE 344
            + PD   +T ++S ++  G + D+  L ++M+KR + P++  Y  L   L R E    E
Sbjct: 267 GLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDE 326

Query: 345 ALKILEKIKEVGLQPDCTTYNSLIRPLCEVGKLDEAKDVLTKMTDDNISPTIETYHSFIQ 404
           A+++  +++  G + D  TY +LI   C+ G +D+   VL  M    + P+  TY   + 
Sbjct: 327 AMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMV 386

Query: 405 GADSETSF----ELLKQMRQNGLGPTEATFVIMFNKSFELEQPDYALKAWAEMKRYEISP 464
             + +  F    EL+++M++ G  P    + ++   + +L +   A++ W EM+   +SP
Sbjct: 387 AHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSP 446

Query: 465 NSEHYAVLVQGLATYGLLKQARELYDQMTSHGYILHPK 494
             + + +++ G  + G L +A   + +M S G    P+
Sbjct: 447 GVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSAPQ 483

[Close]
BLAST of Cp4.1LG12g07180 vs. TAIR10
Match: AT5G65820.1 (AT5G65820.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 178.7 bits (452), Expect = 9.6e-45
Identity = 109/426 (25.59%), Postives = 206/426 (48.36%), Query Frame = 1 

Query: 75  NHRPNDARSAQFVELLKRAARLPSEVEAIA-----ALGEFDVQADPNLVYSAIWVLRDDW 134
           N R  +++  +F   ++++ R+  +  +       AL E  V+  P L+   +    D  
Sbjct: 68  NDRTKNSKYDEFASDVEKSYRILRKFHSRVPKLELALNESGVELRPGLIERVLNRCGDAG 127

Query: 135 KSSFLAFKWGEKWGSIDE--EICNLMIWVLGNHKKFSTAWCLIREFH--GSLLNSRQAML 194
              +  F W  K        E+   M+ +L   ++F   W LI E       L   +  +
Sbjct: 128 NLGYRFFVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFV 187

Query: 195 VMIDRYAHANEASKAIKTFHMMEKFRLTPDQEAFHALLNSLCKYGNIEEAEEFMLVNKKL 254
           V++ R+A A+   KAI+    M KF   PD+  F  LL++LCK+G++++A +     +  
Sbjct: 188 VLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMR 247

Query: 255 FPLETESFNIILNGWCNVSVDVFEAKRIWREMSKCCILPDSTSYTLMISCFSRTGNLFDS 314
           FP+    F  +L GWC V   + EAK +  +M++    PD   YT ++S ++  G + D+
Sbjct: 248 FPVNLRYFTSLLYGWCRVG-KMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADA 307

Query: 315 LRLYDEMKKRDWIPSLEVYNSLAYVLTRENCFSEALKILEKIKEVGLQPDCTTYNSLIRP 374
             L  +M++R + P+   Y  L   L + +   EA+K+  +++    + D  TY +L+  
Sbjct: 308 YDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSG 367

Query: 375 LCEVGKLDEAKDVLTKMTDDNISPTIETYHSFIQGADSETSF----ELLKQMRQNGLGPT 434
            C+ GK+D+   VL  M    + P+  TY   +   + + SF    EL+++MRQ    P 
Sbjct: 368 FCKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPD 427

Query: 435 EATFVIMFNKSFELEQPDYALKAWAEMKRYEISPNSEHYAVLVQGLATYGLLKQARELYD 488
              + ++   + +L +   A++ W EM+   +SP  + + +++ GLA+ G L +A + + 
Sbjct: 428 IGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFK 487

[Close]
BLAST of Cp4.1LG12g07180 vs. TAIR10
Match: AT3G15200.1 (AT3G15200.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 171.0 bits (432), Expect = 2.0e-42
Identity = 113/434 (26.04%), Postives = 213/434 (49.08%), Query Frame = 1 

Query: 80  DARSAQFVELLKRAARLPSEVEAIAALGEFDVQADPNLVYSAIWVLRDDWKSSFLAFKWG 139
           D +SA  V  + +  R  S  +    L +  +     LV   +   R DWK +++  +  
Sbjct: 74  DKQSALDVHNIIKHHRGSSPEKIKRILDKCGIDLTEELVLEVVNRNRSDWKPAYILSQLV 133

Query: 140 EKWGS--IDEEICNLMIWVLGNHKKFSTAWCLIREFHGSL--LNSRQAML------VMID 199
            K         + N ++ VLG  ++F        EFH     ++ R   +      V+++
Sbjct: 134 VKQSVHLSSSMLYNEILDVLGKMRRFE-------EFHQVFDEMSKRDGFVNEKTYEVLLN 193

Query: 200 RYAHANEASKAIKTFHMMEKFRLTPDQEAFHALLNSLCKYGNIEEAEEFMLVNKKLFPLE 259
           RYA A++  +A+  F   ++F +  D  AFH LL  LC+Y ++E AE      ++ F  +
Sbjct: 194 RYAAAHKVDEAVGVFERRKEFGIDDDLVAFHGLLMWLCRYKHVEFAETLFCSRRREFGCD 253

Query: 260 TESFNIILNGWCNVSVDVFEAKRIWREMSKCCILPDSTSYTLMISCFSRTGNLFDSLRLY 319
            ++ N+ILNGWC V  +V EAKR W+++      PD  SY  MI+  ++ G L  ++ LY
Sbjct: 254 IKAMNMILNGWC-VLGNVHEAKRFWKDIIASKCRPDVVSYGTMINALTKKGKLGKAMELY 313

Query: 320 DEMKKRDWIPSLEVYNSLAYVLTRENCFSEALKILEKIKEVGLQPDCTTYNSLIRPLCEV 379
             M      P +++ N++   L  +    EAL++  +I E G  P+  TYNSL++ LC++
Sbjct: 314 RAMWDTRRNPDVKICNNVIDALCFKKRIPEALEVFREISEKGPDPNVVTYNSLLKHLCKI 373

Query: 380 GKLDEAKDVLTKM--TDDNISPTIETYHSFIQGADSETSFEL-LKQMRQNGLGPTEATFV 439
            + ++  +++ +M     + SP   T+   ++ +      ++ L++M +N    T   + 
Sbjct: 374 RRTEKVWELVEEMELKGGSCSPNDVTFSYLLKYSQRSKDVDIVLERMAKNKCEMTSDLYN 433

Query: 440 IMFNKSFELEQPDYALKAWAEMKRYEISPNSEHYAVLVQGLATYGLLKQARELYDQMTSH 499
           +MF    + ++ +   + W+EM+R  + P+   Y + + GL T G + +A   + +M S 
Sbjct: 434 LMFRLYVQWDKEEKVREIWSEMERSGLGPDQRTYTIRIHGLHTKGKIGEALSYFQEMMSK 493

Query: 500 GYILHPKIKMLVKE 501
           G +  P+ +ML+ +
Sbjct: 494 GMVPEPRTEMLLNQ 499

[Close]
BLAST of Cp4.1LG12g07180 vs. NCBI nr
Match: gi|659122515|ref|XP_008461183.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g80880, mitochondrial [Cucumis melo])

HSP 1 Score: 903.3 bits (2333), Expect = 2.1e-259
Identity = 449/546 (82.23%), Postives = 482/546 (88.28%), Query Frame = 1 

Query: 1   MACLSSIARGLSRNSPLPFRQLLQLINFQIPDSPFQAFHQTLHLPSQSARQFSALPFCSQ 60
           MACLSSIAR L R  PLPF  LL L    I DSPFQAF QTL L S  A QFSALP  SQ
Sbjct: 1   MACLSSIARRLCRIHPLPFHHLLYLNRLSIRDSPFQAFRQTLCLRSLFAHQFSALPSFSQ 60

Query: 61  KVAHPFHFDTVRFQNHRPNDARSAQFVELLKRAARLPSEVEAIAALGEFDVQADPNLVYS 120
           KV   F FDT RF+N+R +DA +A+F+EL KR A LPSEVEA+AAL EFDVQAD +LVYS
Sbjct: 61  KVGDQFQFDTGRFKNYRQSDACNARFIELFKRVALLPSEVEAVAALDEFDVQADSDLVYS 120

Query: 121 AIWVLRDDWKSSFLAFKWGEKWGSIDEEICNLMIWVLGNHKKFSTAWCLIREFHGSLLNS 180
           AIWVLRDDWKSSFLAFKWGEKWG+IDEEICNLMIWVLGNHKKFSTAWCLIRE HGSLLNS
Sbjct: 121 AIWVLRDDWKSSFLAFKWGEKWGAIDEEICNLMIWVLGNHKKFSTAWCLIRELHGSLLNS 180

Query: 181 RQAMLVMIDRYAHANEASKAIKTFHMMEKFRLTPDQEAFHALLNSLCKYGNIEEAEEFML 240
           RQAMLVMIDRYA+ANEASKAIKTFHMMEKFRLTPDQEAFHALLNSLCKYGNIEEAEEFM 
Sbjct: 181 RQAMLVMIDRYAYANEASKAIKTFHMMEKFRLTPDQEAFHALLNSLCKYGNIEEAEEFMF 240

Query: 241 VNKKLFPLETESFNIILNGWCNVSVDVFEAKRIWREMSKCCILPDSTSYTLMISCFSRTG 300
           VNKKLFPLETESFNIILNGWCNV+VDVFEAKRIWREMSKCCILPDSTSYT MISCFS+ G
Sbjct: 241 VNKKLFPLETESFNIILNGWCNVTVDVFEAKRIWREMSKCCILPDSTSYTHMISCFSKNG 300

Query: 301 NLFDSLRLYDEMKKRDWIPSLEVYNSLAYVLTRENCFSEALKILEKIKEVGLQPDCTTYN 360
           NLFDSLR YD+MKKRDWIPSLEVYNSLAY L RENCF+EALKILEKIKEVGL+PD TTYN
Sbjct: 301 NLFDSLRFYDQMKKRDWIPSLEVYNSLAYALMRENCFNEALKILEKIKEVGLRPDSTTYN 360

Query: 361 SLIRPLCEVGKLDEAKDVLTKMTDDNISPTIETYHSFIQGADSETSFELLKQMRQNGLGP 420
           SLI PLCE GKLDEAKDVLT MT+DNI PTIETYHSFIQ ADS+ SFELLK+MRQ+GLGP
Sbjct: 361 SLISPLCEAGKLDEAKDVLTMMTEDNIIPTIETYHSFIQAADSKMSFELLKRMRQDGLGP 420

Query: 421 TEATFVIMFNKSFELEQPDYALKAWAEMKRYEISPNSEHYAVLVQGLATYGLLKQARELY 480
            E TF+IMFNKSFELEQP+YAL AW EMKRY++ P+SEHY+VL+QGLAT G LK+ARELY
Sbjct: 421 IEVTFLIMFNKSFELEQPEYALNAWVEMKRYKVFPSSEHYSVLIQGLATCGHLKKARELY 480

Query: 481 DQMTSHGYILHPKIKMLVKEPELRSIEEATQQVRHNKKGKFF-HRKGSMMRWKSHKQQSR 540
           D+M  HG+I HPKIK L+KEP+  SI+EA QQVRHNKKGKF  HRKGS MRWKSHKQQS+
Sbjct: 481 DEMILHGFIAHPKIKTLLKEPDSGSIDEARQQVRHNKKGKFLSHRKGSTMRWKSHKQQSK 540

Query: 541 DDASFE 546
            DASFE
Sbjct: 541 RDASFE 546

[Close]
BLAST of Cp4.1LG12g07180 vs. NCBI nr
Match: gi|778728914|ref|XP_011659500.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g80880, mitochondrial [Cucumis sativus])

HSP 1 Score: 887.5 bits (2292), Expect = 1.2e-254
Identity = 442/546 (80.95%), Postives = 479/546 (87.73%), Query Frame = 1 

Query: 1   MACLSSIARGLSRNSPLPFRQLLQLINFQIPDSPFQAFHQTLHLPSQSARQFSALPFCSQ 60
           MA LSSIAR L R  PLPF  LL L   +IPDSPFQAFHQT  L S  ARQFSALP  SQ
Sbjct: 1   MASLSSIARRLCRIHPLPFHHLLYLNRLRIPDSPFQAFHQTFSLHSFFARQFSALPSFSQ 60

Query: 61  KVAHPFHFDTVRFQNHRPNDARSAQFVELLKRAARLPSEVEAIAALGEFDVQADPNLVYS 120
           K+  PF FDT RFQN+R +DA +A+F+EL KR A LPSEVEA+AAL EFDV+AD +LVYS
Sbjct: 61  KLGDPFLFDTGRFQNYRQSDACNARFIELFKRVALLPSEVEAVAALDEFDVKADLDLVYS 120

Query: 121 AIWVLRDDWKSSFLAFKWGEKWGSIDEEICNLMIWVLGNHKKFSTAWCLIREFHGSLLNS 180
           AIWVLRDDWKSS LAFKWGEK G+IDEEICNLMIWVLGNHKKFSTAW LIRE HGSLLNS
Sbjct: 121 AIWVLRDDWKSSLLAFKWGEKVGAIDEEICNLMIWVLGNHKKFSTAWSLIRELHGSLLNS 180

Query: 181 RQAMLVMIDRYAHANEASKAIKTFHMMEKFRLTPDQEAFHALLNSLCKYGNIEEAEEFML 240
            QAMLVMIDRYA+ANEASKAIKTFHMMEKFRLTPDQEAFH LLNSLCKYGNIEEAEEFM 
Sbjct: 181 MQAMLVMIDRYAYANEASKAIKTFHMMEKFRLTPDQEAFHVLLNSLCKYGNIEEAEEFMF 240

Query: 241 VNKKLFPLETESFNIILNGWCNVSVDVFEAKRIWREMSKCCILPDSTSYTLMISCFSRTG 300
           VNKKLFPL TESFNIILNGWCNV+VDVFEAKRIWREMSKCCILPDSTSYT MISCFS+ G
Sbjct: 241 VNKKLFPLGTESFNIILNGWCNVTVDVFEAKRIWREMSKCCILPDSTSYTHMISCFSKNG 300

Query: 301 NLFDSLRLYDEMKKRDWIPSLEVYNSLAYVLTRENCFSEALKILEKIKEVGLQPDCTTYN 360
           NLFDSLR YD+MKKRDWIPS+EVYNSLAYVLTRENCF+EALKILEKIKEVGL+PD TTYN
Sbjct: 301 NLFDSLRFYDQMKKRDWIPSVEVYNSLAYVLTRENCFNEALKILEKIKEVGLRPDSTTYN 360

Query: 361 SLIRPLCEVGKLDEAKDVLTKMTDDNISPTIETYHSFIQGADSETSFELLKQMRQNGLGP 420
           SLI PLCE GKLDEAKDVLT MT+DNISPTIETYHSFIQ ADS+ SFELLK+MRQ+GLGP
Sbjct: 361 SLISPLCEAGKLDEAKDVLTMMTEDNISPTIETYHSFIQAADSKMSFELLKRMRQDGLGP 420

Query: 421 TEATFVIMFNKSFELEQPDYALKAWAEMKRYEISPNSEHYAVLVQGLATYGLLKQARELY 480
           TE TF+IMFNKSFELE+P+YAL  W EMKRYE+ P+ EHY+VL+QGLAT G LK+ARELY
Sbjct: 421 TEGTFLIMFNKSFELEEPEYALNVWVEMKRYEVFPSCEHYSVLIQGLATCGHLKKARELY 480

Query: 481 DQMTSHGYILHPKIKMLVKEPELRSIEEATQQVRHNKKGKFF-HRKGSMMRWKSHKQQSR 540
           D+M  HG+I HPKIK L+KEP+L SI+EA QQVRHN KGKF  HRKG  MRWKSHKQ+S+
Sbjct: 481 DEMILHGFIAHPKIKTLLKEPDLGSIDEARQQVRHNNKGKFIPHRKGRTMRWKSHKQRSK 540

Query: 541 DDASFE 546
             ASFE
Sbjct: 541 GAASFE 546

[Close]
BLAST of Cp4.1LG12g07180 vs. NCBI nr
Match: gi|658014970|ref|XP_008342813.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g80880, mitochondrial [Malus domestica])

HSP 1 Score: 619.4 bits (1596), Expect = 6.0e-174
Identity = 300/511 (58.71%), Postives = 387/511 (75.73%), Query Frame = 1 

Query: 36  QAFHQTLHLPSQSARQFSAL-PFCSQKVAHPFHFDTVRFQNHRPNDARSAQFVELLKRAA 95
           Q FH+TL +  Q+ R FS L PF +Q +  P      RF    P D+R  QF+ELLKRAA
Sbjct: 46  QTFHRTLIVLPQTPRHFSTLQPFSAQTLNDPLG---QRFNTDHPRDSRFTQFLELLKRAA 105

Query: 96  RLPSEVEAIAALGEFDVQADPNLVYSAIWVLRDDWKSSFLAFKWGEKWGSIDEEICNLMI 155
              SE EA+A L E  ++ D   V  AIW LR+DWKS+FLAF+WGEKWG  +EE C+LM+
Sbjct: 106 DFASEAEAVAFLDESGIEVDRETVLLAIWELREDWKSAFLAFQWGEKWGCCNEEACSLMV 165

Query: 156 WVLGNHKKFSTAWCLIREFHGSLLNSRQAMLVMIDRYAHANEASKAIKTFHMMEKFRLTP 215
           W+LG+HKKFSTAWCLIR+ H +L+++R+AML+MIDRYA AN+  KAIKTFH+M+KFRLTP
Sbjct: 166 WILGSHKKFSTAWCLIRDLHRALMDTRRAMLIMIDRYASANDPCKAIKTFHVMDKFRLTP 225

Query: 216 DQEAFHALLNSLCKYGNIEEAEEFMLVNKKLFPLETESFNIILNGWCNVSVDVFEAKRIW 275
           DQEAFH LLN+LCKYGNIEEAEEFMLVNKKLFPLETESFNIILNGWCN+SVDVFEAKR+W
Sbjct: 226 DQEAFHILLNALCKYGNIEEAEEFMLVNKKLFPLETESFNIILNGWCNISVDVFEAKRVW 285

Query: 276 REMSKCCILPDSTSYTLMISCFSRTGNLFDSLRLYDEMKKRDWIPSLEVYNSLAYVLTRE 335
           REMSKCC+ PD+TSYT +ISCFS+ G LFDSLRLYDEMKKR WIP + VYNSL YVLT E
Sbjct: 286 REMSKCCVTPDATSYTHLISCFSKVGKLFDSLRLYDEMKKRGWIPGISVYNSLIYVLTCE 345

Query: 336 NCFSEALKILEKIKEVGLQPDCTTYNSLIRPLCEVGKLDEAKDVLTKMTDDNISPTIETY 395
           NCF EALKIL+K+KE GLQ D TTYNS+I PLCE  KL+EA+ +L+ M  +N+SPT ETY
Sbjct: 346 NCFKEALKILDKLKEEGLQADATTYNSMICPLCESEKLEEARQMLSAMIANNLSPTTETY 405

Query: 396 HSFIQGADSETSFELLKQMRQNGLGPTEATFVIMFNKSFELEQPDYALKAWAEMKRYEIS 455
           ++F+Q    E + E+L +M++  LGP+ +TF+++  K F LEQP+ ALK W EMK+Y + 
Sbjct: 406 NAFLQSTGLEGTLEILNRMKKASLGPSSSTFLMILGKFFRLEQPEMALKIWTEMKQYGVV 465

Query: 456 PNSEHYAVLVQGLATYGLLKQARELYDQMTSHGYILHPKIKMLVKEPELRSIEEATQQVR 515
           P+S HY V+VQGLA   LL +A+E++ +M ++G++  PK+K L++ P  R ++   +++ 
Sbjct: 466 PDSAHYTVMVQGLAACRLLIKAKEIFSEMKTNGFVEDPKLKRLLEVPGSR-VKGKRRRIP 525

Query: 516 HNKKGKFFHRKGSMMRWKSHKQQSRDDASFE 546
             +  K   ++GS  RW S ++  +  AS +
Sbjct: 526 VKQATKVNQKQGSTKRWNSLRKSRKKKASIK 552

[Close]
BLAST of Cp4.1LG12g07180 vs. NCBI nr
Match: gi|694326575|ref|XP_009354198.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g80880, mitochondrial [Pyrus x bretschneideri])

HSP 1 Score: 618.2 bits (1593), Expect = 1.3e-173
Identity = 298/502 (59.36%), Postives = 379/502 (75.50%), Query Frame = 1 

Query: 36  QAFHQTLHLPSQSARQFSAL-PFCSQKVAHPFHFDTVRFQNHRPNDARSAQFVELLKRAA 95
           Q FH+TL +  Q+ R F  L PF +Q +  P  F+  RF  + P D+   QF+ELLKRAA
Sbjct: 46  QTFHRTLLVLPQTPRHFCTLQPFSAQTLNDPLGFNGQRFNKNHPRDSGFTQFLELLKRAA 105

Query: 96  RLPSEVEAIAALGEFDVQADPNLVYSAIWVLRDDWKSSFLAFKWGEKWGSIDEEICNLMI 155
              SE E +A L E  ++ D   V  AIW LR DWKS+FLAF+WGEKWG  +EE C+LM+
Sbjct: 106 DFASEAETMAFLDESGIKVDREAVLLAIWELRQDWKSAFLAFQWGEKWGCCNEEACSLMV 165

Query: 156 WVLGNHKKFSTAWCLIREFHGSLLNSRQAMLVMIDRYAHANEASKAIKTFHMMEKFRLTP 215
           W+LG+HKKFSTAWCLIR+ H +L+++R+AML+MIDRYA  N+  KAIKTFH+M+KFRLTP
Sbjct: 166 WILGSHKKFSTAWCLIRDLHRALMDTRRAMLIMIDRYASVNDPCKAIKTFHVMDKFRLTP 225

Query: 216 DQEAFHALLNSLCKYGNIEEAEEFMLVNKKLFPLETESFNIILNGWCNVSVDVFEAKRIW 275
           DQEAFH LLN+LCKYGNIEEAEEFMLVNKKLFPLETESFNIILNGWCN+SVDVFEAKR+W
Sbjct: 226 DQEAFHILLNALCKYGNIEEAEEFMLVNKKLFPLETESFNIILNGWCNISVDVFEAKRVW 285

Query: 276 REMSKCCILPDSTSYTLMISCFSRTGNLFDSLRLYDEMKKRDWIPSLEVYNSLAYVLTRE 335
           REMSKCC+ PD+TSYT +ISCFS+ G LFDSLRLYDEMKKR WIP + VYNSL YVLT E
Sbjct: 286 REMSKCCVTPDATSYTHLISCFSKVGKLFDSLRLYDEMKKRGWIPGISVYNSLIYVLTCE 345

Query: 336 NCFSEALKILEKIKEVGLQPDCTTYNSLIRPLCEVGKLDEAKDVLTKMTDDNISPTIETY 395
           NCF EALKIL+K+KE GLQ D TTYNS+I PLCE  KL+EA+ +L+ M  DN+SPT ETY
Sbjct: 346 NCFKEALKILDKLKEEGLQADATTYNSMICPLCESEKLEEARQMLSAMIADNLSPTTETY 405

Query: 396 HSFIQGADSETSFELLKQMRQNGLGPTEATFVIMFNKSFELEQPDYALKAWAEMKRYEIS 455
           ++F+Q    E + E+L +M++  LGP+ +TF+++  K F LEQP+ ALK W EMK+Y + 
Sbjct: 406 NAFLQSTGLEGTLEILNRMKKANLGPSSSTFLMILGKFFRLEQPEMALKMWTEMKQYGVV 465

Query: 456 PNSEHYAVLVQGLATYGLLKQARELYDQMTSHGYILHPKIKMLVKEPELRSIEEATQQVR 515
           P+S HY V+VQGLA   LL +A+E++ +M + G++  PK+K L++EP  R ++   +   
Sbjct: 466 PDSAHYTVMVQGLAACRLLIKAKEIFSEMKTDGFVEDPKLKRLLEEPGSR-VKGKRRPKP 525

Query: 516 HNKKGKFFHRKGSMMRWKSHKQ 537
             +  K   ++GS  RW S +Q
Sbjct: 526 VKQATKVNQKQGSTKRWNSLRQ 546

[Close]
BLAST of Cp4.1LG12g07180 vs. NCBI nr
Match: gi|645245269|ref|XP_008228803.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g80880, mitochondrial [Prunus mume])

HSP 1 Score: 605.1 bits (1559), Expect = 1.2e-169
Identity = 307/555 (55.32%), Postives = 393/555 (70.81%), Query Frame = 1 

Query: 4   LSSIARGLSRNSPLPFRQLLQLINFQIPDSP-----------FQAFHQTLHLPSQSARQF 63
           L SIAR L    P  F     L +     SP            Q FH+TL +P Q+ R F
Sbjct: 3   LPSIARRLRSKHPQLFLSHTLLPSISNSPSPPHSSHPRPQHLSQTFHRTLLVPFQTPRHF 62

Query: 64  SAL-PFCSQKVAHPFHFDTVRFQNHRPNDARSAQFVELLKRAARLPSEVEAIAALGEFDV 123
           S L PF +Q +  P  F+  RF+ + P  +   QF+ELLK AA   SE EA+A L +  +
Sbjct: 63  STLQPFSAQTLNDPLGFNAQRFKTNDPYKSGLTQFLELLKHAAHFASEAEAMAFLDKSGI 122

Query: 124 QADPNLVYSAIWVLRDDWKSSFLAFKWGEKWGSIDEEICNLMIWVLGNHKKFSTAWCLIR 183
           + + + V  AIW L++DWK +FLAFKWGEK G  DEE C+ M+WVLG+H+KFSTAWCLIR
Sbjct: 123 EVNGDTVLLAIWELKEDWKLAFLAFKWGEKLGCCDEEACSWMVWVLGSHRKFSTAWCLIR 182

Query: 184 EFHGSLLNSRQAMLVMIDRYAHANEASKAIKTFHMMEKFRLTPDQEAFHALLNSLCKYGN 243
           + H +L+++R+A+L+MI+RYA  N+  KAIKTF MM+KFRLTPDQEAFH LLN+LCKYGN
Sbjct: 183 DLHRALMDTRRALLIMIERYASVNDPCKAIKTFQMMDKFRLTPDQEAFHTLLNALCKYGN 242

Query: 244 IEEAEEFMLVNKKLFPLETESFNIILNGWCNVSVDVFEAKRIWREMSKCCILPDSTSYTL 303
           IEEAEEFMLVNKKLFPLET  FNIILNGWCN+SVDVFEAKR+WREMSKCCI PD+TSYT 
Sbjct: 243 IEEAEEFMLVNKKLFPLETVGFNIILNGWCNISVDVFEAKRVWREMSKCCITPDATSYTH 302

Query: 304 MISCFSRTGNLFDSLRLYDEMKKRDWIPSLEVYNSLAYVLTRENCFSEALKILEKIKEVG 363
           +ISC S+ G LFDSLR YD+MKKR ++P L+VYNSL YVLT ENCF+EALK+L   K++G
Sbjct: 303 LISCLSKVGKLFDSLRFYDQMKKRGFVPGLKVYNSLIYVLTCENCFNEALKMLGNSKQMG 362

Query: 364 LQPDCTTYNSLIRPLCEVGKLDEAKDVLTKMTDDNISPTIETYHSFIQGADSETSFELLK 423
           LQPD TTYNS+I PLCE  K +EA+ +L+ M +DN+SPTIETYH+F+Q    E + E+L 
Sbjct: 363 LQPDSTTYNSMICPLCESKKPEEARQMLSAMIEDNVSPTIETYHAFLQSTGLEGTLEILN 422

Query: 424 QMRQNGLGPTEATFVIMFNKSFELEQPDYALKAWAEMKRYEISPNSEHYAVLVQGLATYG 483
           +M++  LGP   TF+++  K F LEQP+ ALK W EMK Y + P+S HY V+VQGLA   
Sbjct: 423 RMKKANLGPNGNTFLMILGKFFRLEQPEMALKIWTEMKHYGVVPDSTHYTVMVQGLAACR 482

Query: 484 LLKQARELYDQMTSHGYILHPKIKMLVKEPELRSIEEATQQVRHNKKGKFFHRK-GSMMR 543
           LL +AREL+ +M S+G++  PK++ L+KEP   S  +  Q++R  K+    ++K G M R
Sbjct: 483 LLMKARELFAEMRSNGFLGDPKLEKLLKEPVGGSSVKGKQRLRPVKQATRVNQKQGRMKR 542

Query: 544 WKSHKQQSRDDASFE 546
           WKS  Q   +  S E
Sbjct: 543 WKSPHQSREEKRSIE 557

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g07180 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP137_ARATH3.1e-13853.19Pentatricopeptide repeat-containing protein At1g80880, mitochondrial OS=Arabidop... [more]
PP383_ARATH2.1e-7338.05Pentatricopeptide repeat-containing protein At5g15010, mitochondrial OS=Arabidop... [more]
PP275_ARATH3.4e-4426.38Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana GN... [more]
PP447_ARATH1.7e-4325.59Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis th... [more]
PP233_ARATH3.6e-4126.04Putative pentatricopeptide repeat-containing protein At3g15200 OS=Arabidopsis th... [more]
BLAST of Cp4.1LG12g07180 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K678_CUCSA8.3e-25580.95Uncharacterized protein OS=Cucumis sativus GN=Csa_7G431960 PE=4 SV=1[more]
U5GND9_POPTR5.9e-16855.80Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s03510g PE=4 SV=1[more]
A0A067LCX9_JATCU1.4e-16154.94Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26977 PE=4 SV=1[more]
B9RGM1_RICCO1.7e-15952.83Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCO... [more]
W9QV67_9ROSA5.5e-15859.02Uncharacterized protein OS=Morus notabilis GN=L484_018066 PE=4 SV=1[more]
BLAST of Cp4.1LG12g07180 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G80880.11.8e-13953.19 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G15010.11.2e-7438.05 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G49730.11.9e-4526.38 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G65820.19.6e-4525.59 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G15200.12.0e-4226.04 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of Cp4.1LG12g07180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659122515|ref|XP_008461183.1|2.1e-25982.23PREDICTED: pentatricopeptide repeat-containing protein At1g80880, mitochondrial ... [more]
gi|778728914|ref|XP_011659500.1|1.2e-25480.95PREDICTED: pentatricopeptide repeat-containing protein At1g80880, mitochondrial ... [more]
gi|658014970|ref|XP_008342813.1|6.0e-17458.71PREDICTED: pentatricopeptide repeat-containing protein At1g80880, mitochondrial ... [more]
gi|694326575|ref|XP_009354198.1|1.3e-17359.36PREDICTED: pentatricopeptide repeat-containing protein At1g80880, mitochondrial ... [more]
gi|645245269|ref|XP_008228803.1|1.2e-16955.32PREDICTED: pentatricopeptide repeat-containing protein At1g80880, mitochondrial ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0009451 RNA modification
cellular_component GO:0005575 cellular_component
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0005515 protein binding
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g07180.1Cp4.1LG12g07180.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 219..238
score: 0.09coord: 186..210
score: 0.18coord: 460..487
score: 0.2coord: 288..315
score: 3.
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 342..398
score: 2.6
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 288..320
score: 3.2E-7coord: 323..356
score: 1.6E-4coord: 186..215
score: 0.0026coord: 358..390
score: 6.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 215..245
score: 7.245coord: 355..389
score: 12.211coord: 180..214
score: 7.673coord: 421..455
score: 7.235coord: 285..319
score: 11.707coord: 320..354
score: 9.657coord: 456..490
score: 9.504coord: 249..284
score: 8.714coord: 146..176
score: 5
IPR011990Tetratricopeptide-like helical domainGENE3DG3DSA:1.25.40.10coord: 288..382
score: 1.4E-5coord: 215..253
score: 1.
IPR011990Tetratricopeptide-like helical domainunknownSSF48452TPR-likecoord: 145..485
score: 6.4
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 126..532
score: 7.7E-225coord: 16..92
score: 7.7E
NoneNo IPR availablePANTHERPTHR24015:SF602SUBFAMILY NOT NAMEDcoord: 126..532
score: 7.7E-225coord: 16..92
score: 7.7E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g07180Cucsa.105940Cucumber (Gy14) v1cgycpeB0229
Cp4.1LG12g07180CmaCh17G009000Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g07180CmoCh17G008710Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g07180Cla015319Watermelon (97103) v1cpewmB131
Cp4.1LG12g07180Csa7G431960Cucumber (Chinese Long) v2cpecuB161
Cp4.1LG12g07180MELO3C023471Melon (DHL92) v3.5.1cpemeB123
Cp4.1LG12g07180ClCG09G003370Watermelon (Charleston Gray)cpewcgB126
Cp4.1LG12g07180CSPI07G20080Wild cucumber (PI 183967)cpecpiB163
Cp4.1LG12g07180Lsi02G026640Bottle gourd (USVL1VR-Ls)cpelsiB113
Cp4.1LG12g07180MELO3C023471.2Melon (DHL92) v3.6.1cpemedB150
Cp4.1LG12g07180CsaV3_7G031860Cucumber (Chinese Long) v3cpecucB0188
Cp4.1LG12g07180Bhi09G000437Wax gourdcpewgoB0201
Cp4.1LG12g07180CsGy7G018360Cucumber (Gy14) v2cgybcpeB906
Cp4.1LG12g07180Carg18732Silver-seed gourdcarcpeB0493
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g07180Cucurbita pepo (Zucchini)cpecpeB157
Cp4.1LG12g07180Cucurbita pepo (Zucchini)cpecpeB181
Cp4.1LG12g07180Cucurbita pepo (Zucchini)cpecpeB185
Cp4.1LG12g07180Cucurbita maxima (Rimu)cmacpeB260
Cp4.1LG12g07180Cucurbita maxima (Rimu)cmacpeB465
Cp4.1LG12g07180Cucurbita maxima (Rimu)cmacpeB902
Cp4.1LG12g07180Cucurbita moschata (Rifu)cmocpeB224
Cp4.1LG12g07180Cucurbita moschata (Rifu)cmocpeB425
Cp4.1LG12g07180Cucurbita moschata (Rifu)cmocpeB839
Cp4.1LG12g07180Wild cucumber (PI 183967)cpecpiB138
Cp4.1LG12g07180Cucumber (Chinese Long) v2cpecuB137
Cp4.1LG12g07180Bottle gourd (USVL1VR-Ls)cpelsiB116
Cp4.1LG12g07180Watermelon (Charleston Gray)cpewcgB134
Cp4.1LG12g07180Melon (DHL92) v3.5.1cpemeB133
Cp4.1LG12g07180Cucumber (Gy14) v2cgybcpeB308
Cp4.1LG12g07180Silver-seed gourdcarcpeB0631
Cp4.1LG12g07180Silver-seed gourdcarcpeB1144