Carg18732 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18732
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	pentatricopeptide repeat-containing protein At1g80880, mitochondrial
Location	Cucurbita_argyrosperma_scaffold_139 : 392956 .. 395466 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATGTCTTTCTTCTATTGCAAGAGGGCTCTCCAGAAACACTCCATTGCCATTCCGTCAACTCCTTCAGCTCATCAGTTTCAAAATTCCCGATTCGCCCTCTCAGGCATTTCATCAAACACTTCTCCTGCCTTCTCAGTCCGCTCGTCAATTCTCAGCACTTCCATTCTGTTCTCAAAAAGTTGCCCACCCATTTCACTTTGACACAGTAAGATTCCAAAACCATCGCCCAAACGATGCGCGAAGTGCCGAATTCGTTGAATTGCTTAAACGGGCCGCCCGTTTGCCCTCGGAAGTGGAGGCTATTGCTGCGTTGGGCGAGTTTGATGTCCAGGCAGATTCGAATTTGGTGTACTCCGCAATTTGGGTGTTGAGGGATGATTGGAAATCGTCATTTCTAGCCTTCAAATGGGGTGAGAAATGGGGATCTATTGACGAAGAAATTTGTAATTTGATGATATGGGTGTTGGGCAATCATAAGAAATTCAGTACTGCTTGGTGTTTGATTAGAGAATTTCATGGATCCTTGTTGAATTCGAGGCAAGCGATGCTTGTCATGATTGATAGGTAAAATTTATTTTCGCATATCTCCATTTACTCTGACATTTCTTTTTGCATTCTGTCATGCCATTTGTAATGACTAGCGAAAACGTTTTTGCATTTTGACTTTACTCGATAACTTAAGACATAGTCTAAGTAACGTGGAAACCATGTAAGAGTCCAAACCTAGTCTTCTACTCAAGGTTTTTAATACTCATTTGCTAGGGAGAGGTTTCTACACTCGTAGGAGTGTTTCGTTTCCCTCTCCAACCGATGTGGGATCTCACAATCCACCCTCTTTAGGGCGATCTCACAATCCACCCCTCTTTAGGGCCCAGCGTCCTCGCTGGTACACTGCCCAGTGTCCACCCCCTTCGGGCTCAACGTCCTCGCTGGCACACCGTCTGATGTCTAGCTCTAATACCATTTGTAATAGTCCAAGCCCACTGTTAGCAAAATTGTCCACTTTGGGCTTTCCCTCAAGGTTTTTAAAATGCATCTACTAGGGAGAGATTTTCACACCCTTATAAAGAATGTTTCGTTCTCCTCTTCAACTGACGTGGGATCTAACAATTCACTACGAGGATTTCACAAATCAAGTTTGTGAACTAGAAAATGGCCTGCTTCAACAAGCTTATATGTAAATGAGTCTTTGTCTATGTGTGTGCGTGTGAGTTTTTCCATGAGCAAGAAGCTTTTGGTTGAAACTAGAGTAGCATTTCATGTTTAATTTGTGTGTTCTATTAGATTGAAGGATGGCCAACATATTTCTGTGAGATACAGAAAAGGCTTTTTTTGATGCATTCTGTTAATTCGTTTCTTAATGGCTTGAAGGGAGATTAACATCCATAGTTACTTTTGAAAATTGCATACTGTTAACAAGGTTGTTCCTGGATTAAGGTATGCACACGCAAATGAGGCAAATAAGGCCATTAAGACATTCCACATGATGGAGAAGTTCAGATTGACTCCGGATCAAGAGGCTTTTCATGCCCTCCTCAATTCTCTCTGTAAATATGGGAACATCGAAGAGGCTGAAGAGTTTATGCTTGTAAACAAGAAGCTTTTTCCTTTGGAAACAGAAAGCTTCAACATTATTCTCAATGGCTGGTGCAATGTATCTGTTGATGTGTTTGAAGCAAAGAGAATTTGGAGAGAAATGTCTAAATGTTGTATTTTGCCAGATTCAACTTCTTACACCCTCATGATCTCCTGTTTTTCGAGGACCGGGAACCTTTTCGACTCGCTTAGACTCTATGATGAGATGAAGAAAAGGGATTGGATTCCAAACCTTGAAGTCTATAATTCTTTAGCTTATGTGTTGACCCGGGAGAATTGTTTCAGTGAAGCTCTCAAAATCCTTGAGAAAATAAAAGAAGTAGGCTTACAGCCCGACTACACGACGTACAACTCGCTTATACGTCCTCTGTGTGAGGTCGGAAAGCTGGATGAAGCAAAAGATGTACTGACCAAGATGACCGACGACAATGTCAGCCCGACGATCGAAACCTACCATTCTTTTATTCAAGGTGCAGATTCTGAAATGAGCTTTGAACTTCTTAAGCAGATAAGACAGAATGGTTTAGGTCCTACTGAGGCTACCTTTATTATAATGTTTAACAAGTCATTTGAACTAGAACAACCGGATTATGCATTGAAAGCGTGGGAAGAAATGAAGCGGTACGAGATATCACCCAACTCCGAACATTACGCAGTCTTGATACAAGGCTTAGCAACATATGGTCTGTTAAAACAGGCCAGAGAATTATATGACCAAATGACATCACATGGATTTATCTTACATCCAAAGATCAAAATGCTCGTGAAGGAACCCGAGTTACGTAGCATCGAAGAAGCCACGCAGCAAGTGACACATAACAAGAAGGGCAAGTTTTTTCATAGAAAAGGGAGCATGATGAGATGGAAATCACATAAACAACAATCTCGAGACGACGCATCGATTGAGTAG

mRNA sequence

ATGGCATGTCTTTCTTCTATTGCAAGAGGGCTCTCCAGAAACACTCCATTGCCATTCCGTCAACTCCTTCAGCTCATCAGTTTCAAAATTCCCGATTCGCCCTCTCAGGCATTTCATCAAACACTTCTCCTGCCTTCTCAGTCCGCTCGTCAATTCTCAGCACTTCCATTCTGTTCTCAAAAAGTTGCCCACCCATTTCACTTTGACACAGTAAGATTCCAAAACCATCGCCCAAACGATGCGCGAAGTGCCGAATTCGTTGAATTGCTTAAACGGGCCGCCCGTTTGCCCTCGGAAGTGGAGGCTATTGCTGCGTTGGGCGAGTTTGATGTCCAGGCAGATTCGAATTTGGTGTACTCCGCAATTTGGGTGTTGAGGGATGATTGGAAATCGTCATTTCTAGCCTTCAAATGGGGTGAGAAATGGGGATCTATTGACGAAGAAATTTGTAATTTGATGATATGGGTGTTGGGCAATCATAAGAAATTCAGTACTGCTTGGTGTTTGATTAGAGAATTTCATGGATCCTTGTTGAATTCGAGGCAAGCGATGCTTGTCATGATTGATAGGTATGCACACGCAAATGAGGCAAATAAGGCCATTAAGACATTCCACATGATGGAGAAGTTCAGATTGACTCCGGATCAAGAGGCTTTTCATGCCCTCCTCAATTCTCTCTGTAAATATGGGAACATCGAAGAGGCTGAAGAGTTTATGCTTGTAAACAAGAAGCTTTTTCCTTTGGAAACAGAAAGCTTCAACATTATTCTCAATGGCTGGTGCAATGTATCTGTTGATGTGTTTGAAGCAAAGAGAATTTGGAGAGAAATGTCTAAATGTTGTATTTTGCCAGATTCAACTTCTTACACCCTCATGATCTCCTGTTTTTCGAGGACCGGGAACCTTTTCGACTCGCTTAGACTCTATGATGAGATGAAGAAAAGGGATTGGATTCCAAACCTTGAAGTCTATAATTCTTTAGCTTATGTGTTGACCCGGGAGAATTGTTTCAGTGAAGCTCTCAAAATCCTTGAGAAAATAAAAGAAGTAGGCTTACAGCCCGACTACACGACGTACAACTCGCTTATACGTCCTCTGTGTGAGGTCGGAAAGCTGGATGAAGCAAAAGATGTACTGACCAAGATGACCGACGACAATGTCAGCCCGACGATCGAAACCTACCATTCTTTTATTCAAGGTGCAGATTCTGAAATGAGCTTTGAACTTCTTAAGCAGATAAGACAGAATGGTTTAGGTCCTACTGAGGCTACCTTTATTATAATGTTTAACAAGTCATTTGAACTAGAACAACCGGATTATGCATTGAAAGCGTGGGAAGAAATGAAGCGGTACGAGATATCACCCAACTCCGAACATTACGCAGTCTTGATACAAGGCTTAGCAACATATGGTCTGTTAAAACAGGCCAGAGAATTATATGACCAAATGACATCACATGGATTTATCTTACATCCAAAGATCAAAATGCTCGTGAAGGAACCCGAGTTACGTAGCATCGAAGAAGCCACGCAGCAAGTGACACATAACAAGAAGGGCAAGTTTTTTCATAGAAAAGGGAGCATGATGAGATGGAAATCACATAAACAACAATCTCGAGACGACGCATCGATTGAGTAG

Coding sequence (CDS)

ATGGCATGTCTTTCTTCTATTGCAAGAGGGCTCTCCAGAAACACTCCATTGCCATTCCGTCAACTCCTTCAGCTCATCAGTTTCAAAATTCCCGATTCGCCCTCTCAGGCATTTCATCAAACACTTCTCCTGCCTTCTCAGTCCGCTCGTCAATTCTCAGCACTTCCATTCTGTTCTCAAAAAGTTGCCCACCCATTTCACTTTGACACAGTAAGATTCCAAAACCATCGCCCAAACGATGCGCGAAGTGCCGAATTCGTTGAATTGCTTAAACGGGCCGCCCGTTTGCCCTCGGAAGTGGAGGCTATTGCTGCGTTGGGCGAGTTTGATGTCCAGGCAGATTCGAATTTGGTGTACTCCGCAATTTGGGTGTTGAGGGATGATTGGAAATCGTCATTTCTAGCCTTCAAATGGGGTGAGAAATGGGGATCTATTGACGAAGAAATTTGTAATTTGATGATATGGGTGTTGGGCAATCATAAGAAATTCAGTACTGCTTGGTGTTTGATTAGAGAATTTCATGGATCCTTGTTGAATTCGAGGCAAGCGATGCTTGTCATGATTGATAGGTATGCACACGCAAATGAGGCAAATAAGGCCATTAAGACATTCCACATGATGGAGAAGTTCAGATTGACTCCGGATCAAGAGGCTTTTCATGCCCTCCTCAATTCTCTCTGTAAATATGGGAACATCGAAGAGGCTGAAGAGTTTATGCTTGTAAACAAGAAGCTTTTTCCTTTGGAAACAGAAAGCTTCAACATTATTCTCAATGGCTGGTGCAATGTATCTGTTGATGTGTTTGAAGCAAAGAGAATTTGGAGAGAAATGTCTAAATGTTGTATTTTGCCAGATTCAACTTCTTACACCCTCATGATCTCCTGTTTTTCGAGGACCGGGAACCTTTTCGACTCGCTTAGACTCTATGATGAGATGAAGAAAAGGGATTGGATTCCAAACCTTGAAGTCTATAATTCTTTAGCTTATGTGTTGACCCGGGAGAATTGTTTCAGTGAAGCTCTCAAAATCCTTGAGAAAATAAAAGAAGTAGGCTTACAGCCCGACTACACGACGTACAACTCGCTTATACGTCCTCTGTGTGAGGTCGGAAAGCTGGATGAAGCAAAAGATGTACTGACCAAGATGACCGACGACAATGTCAGCCCGACGATCGAAACCTACCATTCTTTTATTCAAGGTGCAGATTCTGAAATGAGCTTTGAACTTCTTAAGCAGATAAGACAGAATGGTTTAGGTCCTACTGAGGCTACCTTTATTATAATGTTTAACAAGTCATTTGAACTAGAACAACCGGATTATGCATTGAAAGCGTGGGAAGAAATGAAGCGGTACGAGATATCACCCAACTCCGAACATTACGCAGTCTTGATACAAGGCTTAGCAACATATGGTCTGTTAAAACAGGCCAGAGAATTATATGACCAAATGACATCACATGGATTTATCTTACATCCAAAGATCAAAATGCTCGTGAAGGAACCCGAGTTACGTAGCATCGAAGAAGCCACGCAGCAAGTGACACATAACAAGAAGGGCAAGTTTTTTCATAGAAAAGGGAGCATGATGAGATGGAAATCACATAAACAACAATCTCGAGACGACGCATCGATTGAGTAG

Protein sequence

MACLSSIARGLSRNTPLPFRQLLQLISFKIPDSPSQAFHQTLLLPSQSARQFSALPFCSQKVAHPFHFDTVRFQNHRPNDARSAEFVELLKRAARLPSEVEAIAALGEFDVQADSNLVYSAIWVLRDDWKSSFLAFKWGEKWGSIDEEICNLMIWVLGNHKKFSTAWCLIREFHGSLLNSRQAMLVMIDRYAHANEANKAIKTFHMMEKFRLTPDQEAFHALLNSLCKYGNIEEAEEFMLVNKKLFPLETESFNIILNGWCNVSVDVFEAKRIWREMSKCCILPDSTSYTLMISCFSRTGNLFDSLRLYDEMKKRDWIPNLEVYNSLAYVLTRENCFSEALKILEKIKEVGLQPDYTTYNSLIRPLCEVGKLDEAKDVLTKMTDDNVSPTIETYHSFIQGADSEMSFELLKQIRQNGLGPTEATFIIMFNKSFELEQPDYALKAWEEMKRYEISPNSEHYAVLIQGLATYGLLKQARELYDQMTSHGFILHPKIKMLVKEPELRSIEEATQQVTHNKKGKFFHRKGSMMRWKSHKQQSRDDASIE

Homology

[Close]

BLAST of Carg18732 vs. NCBI nr
Match: XP_022953169.1 (pentatricopeptide repeat-containing protein At1g80880, mitochondrial [Cucurbita moschata] >XP_022953170.1 pentatricopeptide repeat-containing protein At1g80880, mitochondrial [Cucurbita moschata])

HSP 1 Score: 865.1 bits (2234), Expect = 1.2e-247
Identity = 544/545 (99.82%), Postives = 545/545 (100.00%), Query Frame = 0


Query: 1   MACLSSIARGLSRNTPLPFRQLLQLISFKIPDSPSQAFHQTLLLPSQSARQFSALPFCSQ 60
           MACLSSIARGLSRNTPLPFRQLLQLISFKIPDSPSQAFHQTLLLPSQSARQFSALPFCSQ
Sbjct: 1   MACLSSIARGLSRNTPLPFRQLLQLISFKIPDSPSQAFHQTLLLPSQSARQFSALPFCSQ 60

Query: 61  KVAHPFHFDTVRFQNHRPNDARSAEFVELLKRAARLPSEVEAIAALGEFDVQADSNLVYS 120
           KVAHPFHFDTVRFQNHRPNDARSAEFVELLKRAARLPSEVEAIAALGEFDVQADSNLVYS
Sbjct: 61  KVAHPFHFDTVRFQNHRPNDARSAEFVELLKRAARLPSEVEAIAALGEFDVQADSNLVYS 120

Query: 121 AIWVLRDDWKSSFLAFKWGEKWGSIDEEICNLMIWVLGNHKKFSTAWCLIREFHGSLLNS 180
           AIWVLRDDWKSSFLAFKWGEKWGSIDEEICNLMIWVLGNHKKFSTAWCLIREFHGSLLNS
Sbjct: 121 AIWVLRDDWKSSFLAFKWGEKWGSIDEEICNLMIWVLGNHKKFSTAWCLIREFHGSLLNS 180

Query: 181 RQAMLVMIDRYAHANEANKAIKTFHMMEKFRLTPDQEAFHALLNSLCKYGNIEEAEEFML 240
           RQAMLVMIDRYAHANEA+KAIKTFHMMEKFRLTPDQEAFHALLNSLCKYGNIEEAEEFML
Sbjct: 181 RQAMLVMIDRYAHANEASKAIKTFHMMEKFRLTPDQEAFHALLNSLCKYGNIEEAEEFML 240

Query: 241 VNKKLFPLETESFNIILNGWCNVSVDVFEAKRIWREMSKCCILPDSTSYTLMISCFSRTG 300
           VNKKLFPLETESFNIILNGWCNVSVDVFEAKRIWREMSKCCILPDSTSYTLMISCFSRTG
Sbjct: 241 VNKKLFPLETESFNIILNGWCNVSVDVFEAKRIWREMSKCCILPDSTSYTLMISCFSRTG 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADSEMSFELLKQIRQNGLGP 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADSEMSFELLKQIRQNGLGP
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADSEMSFELLKQIRQNGLGP 420

Query: 421 TEATFIIMFNKSFELEQPDYALKAWEEMKRYEISPNSEHYAVLIQGLATYGLLKQARELY 480
           TEATFIIMFNKSFELEQPDYALKAWEEMKRYEISPNSEHYAVLIQGLATYGLLKQARELY
Sbjct: 421 TEATFIIMFNKSFELEQPDYALKAWEEMKRYEISPNSEHYAVLIQGLATYGLLKQARELY 480

Query: 481 DQMTSHGFILHPKIKMLVKEPELRSIEEATQQVTHNKKGKFFHRKGSMMRWKSHKQQSRD 540
           DQMTSHGFILHPKIKMLVKEPELRSIEEATQQVTHNKKGKFFHRKGSMMRWKSHKQQSRD
Sbjct: 481 DQMTSHGFILHPKIKMLVKEPELRSIEEATQQVTHNKKGKFFHRKGSMMRWKSHKQQSRD 540

Query: 541 DASIE 546
           DASIE
Sbjct: 541 DASIE 545

[Close]

BLAST of Carg18732 vs. NCBI nr
Match: XP_023547792.1 (pentatricopeptide repeat-containing protein At1g80880, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023547793.1 pentatricopeptide repeat-containing protein At1g80880, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 841.3 bits (2172), Expect = 1.9e-240
Identity = 529/545 (97.06%), Postives = 538/545 (98.72%), Query Frame = 0


Query: 1   MACLSSIARGLSRNTPLPFRQLLQLISFKIPDSPSQAFHQTLLLPSQSARQFSALPFCSQ 60
           MACLSSIARGLSRN+PLPFRQLLQLI+F+IPDSP QAFHQTL LPSQSARQFSALPFCSQ
Sbjct: 1   MACLSSIARGLSRNSPLPFRQLLQLINFQIPDSPFQAFHQTLHLPSQSARQFSALPFCSQ 60

Query: 61  KVAHPFHFDTVRFQNHRPNDARSAEFVELLKRAARLPSEVEAIAALGEFDVQADSNLVYS 120
           KVAHPFHFDTVRFQNHRPNDARSA+FVELLKRAARLPSEVEAIAALGEFDVQAD NLVYS
Sbjct: 61  KVAHPFHFDTVRFQNHRPNDARSAQFVELLKRAARLPSEVEAIAALGEFDVQADPNLVYS 120

Query: 121 AIWVLRDDWKSSFLAFKWGEKWGSIDEEICNLMIWVLGNHKKFSTAWCLIREFHGSLLNS 180
           AIWVLRDDWKSSFLAFKWGEKWGSIDEEICNLMIWVLGNHKKFSTAWCLIREFHGSLLNS
Sbjct: 121 AIWVLRDDWKSSFLAFKWGEKWGSIDEEICNLMIWVLGNHKKFSTAWCLIREFHGSLLNS 180

Query: 181 RQAMLVMIDRYAHANEANKAIKTFHMMEKFRLTPDQEAFHALLNSLCKYGNIEEAEEFML 240
           RQAMLVMIDRYAHANEA+KAIKTFHMMEKFRLTPDQEAFHALLNSLCKYGNIEEAEEFML
Sbjct: 181 RQAMLVMIDRYAHANEASKAIKTFHMMEKFRLTPDQEAFHALLNSLCKYGNIEEAEEFML 240

Query: 241 VNKKLFPLETESFNIILNGWCNVSVDVFEAKRIWREMSKCCILPDSTSYTLMISCFSRTG 300
           VNKKLFPLETESFNIILNGWCNVSVDVFEAKRIWREMSKCCILPDSTSYTLMISCFSRTG
Sbjct: 241 VNKKLFPLETESFNIILNGWCNVSVDVFEAKRIWREMSKCCILPDSTSYTLMISCFSRTG 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADSEMSFELLKQIRQNGLGP 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADSE SFELLKQ+RQNGLGP
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADSETSFELLKQMRQNGLGP 420

Query: 421 TEATFIIMFNKSFELEQPDYALKAWEEMKRYEISPNSEHYAVLIQGLATYGLLKQARELY 480
           TEATF+IMFNKSFELEQPDYALKAW EMKRYEISPNSEHYAVL+QGLATYGLLKQARELY
Sbjct: 421 TEATFVIMFNKSFELEQPDYALKAWAEMKRYEISPNSEHYAVLVQGLATYGLLKQARELY 480

Query: 481 DQMTSHGFILHPKIKMLVKEPELRSIEEATQQVTHNKKGKFFHRKGSMMRWKSHKQQSRD 540
           DQMTSHG+ILHPKIKMLVKEPELRSIEEATQQV HNKKGKFFHRKGSMMRWKSHKQQSRD
Sbjct: 481 DQMTSHGYILHPKIKMLVKEPELRSIEEATQQVRHNKKGKFFHRKGSMMRWKSHKQQSRD 540

Query: 541 DASIE 546
           DAS E
Sbjct: 541 DASFE 545

[Close]

BLAST of Carg18732 vs. NCBI nr
Match: XP_022992478.1 (pentatricopeptide repeat-containing protein At1g80880, mitochondrial [Cucurbita maxima])

HSP 1 Score: 837.8 bits (2163), Expect = 2.1e-239
Identity = 528/545 (96.88%), Postives = 537/545 (98.53%), Query Frame = 0


Query: 1   MACLSSIARGLSRNTPLPFRQLLQLISFKIPDSPSQAFHQTLLLPSQSARQFSALPFCSQ 60
           MACLSSIARGLSRNTPLPFRQLLQLI+F+IP SPSQAFHQTLLLPSQSARQFSALPFCSQ
Sbjct: 1   MACLSSIARGLSRNTPLPFRQLLQLINFQIPHSPSQAFHQTLLLPSQSARQFSALPFCSQ 60

Query: 61  KVAHPFHFDTVRFQNHRPNDARSAEFVELLKRAARLPSEVEAIAALGEFDVQADSNLVYS 120
           KVAHPFHFDT+RFQNHR NDARSA+FVELLKRAARLPSEVEAIAALGEFDVQAD NLVYS
Sbjct: 61  KVAHPFHFDTLRFQNHRQNDARSAQFVELLKRAARLPSEVEAIAALGEFDVQADPNLVYS 120

Query: 121 AIWVLRDDWKSSFLAFKWGEKWGSIDEEICNLMIWVLGNHKKFSTAWCLIREFHGSLLNS 180
           AIWVLRDDWKSSFLAFKWGEKWGSIDEEICNLMIWVLGNHKKFSTAWCLIREFHGSLLNS
Sbjct: 121 AIWVLRDDWKSSFLAFKWGEKWGSIDEEICNLMIWVLGNHKKFSTAWCLIREFHGSLLNS 180

Query: 181 RQAMLVMIDRYAHANEANKAIKTFHMMEKFRLTPDQEAFHALLNSLCKYGNIEEAEEFML 240
           RQAM VMIDRYAHANEA+KAIKTFHMMEKFRLTPDQEAFHALLNSLCKYGNIEEAEEFML
Sbjct: 181 RQAMHVMIDRYAHANEASKAIKTFHMMEKFRLTPDQEAFHALLNSLCKYGNIEEAEEFML 240

Query: 241 VNKKLFPLETESFNIILNGWCNVSVDVFEAKRIWREMSKCCILPDSTSYTLMISCFSRTG 300
           VNKKLFPLETESFNIILNGWCNVSVDVFEAKRIWREMSKCCILPDSTSYTLMISCFSRTG
Sbjct: 241 VNKKLFPLETESFNIILNGWCNVSVDVFEAKRIWREMSKCCILPDSTSYTLMISCFSRTG 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADSEMSFELLKQIRQNGLGP 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADSEMSFELLKQ+RQNGLGP
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADSEMSFELLKQMRQNGLGP 420

Query: 421 TEATFIIMFNKSFELEQPDYALKAWEEMKRYEISPNSEHYAVLIQGLATYGLLKQARELY 480
           TEATF+IMFNKSFELEQPDYALKAWEEMKRYEI PNSEHY VLIQGLATYGLLKQARELY
Sbjct: 421 TEATFVIMFNKSFELEQPDYALKAWEEMKRYEILPNSEHYEVLIQGLATYGLLKQARELY 480

Query: 481 DQMTSHGFILHPKIKMLVKEPELRSIEEATQQVTHNKKGKFFHRKGSMMRWKSHKQQSRD 540
           DQMTSHGFILHPKIKMLVK+PELRSIEE+TQQV HNKKGKFFHRKGSMMRWKSHKQQSRD
Sbjct: 481 DQMTSHGFILHPKIKMLVKQPELRSIEESTQQVRHNKKGKFFHRKGSMMRWKSHKQQSRD 540

Query: 541 DASIE 546
           DAS E
Sbjct: 541 DASFE 545

[Close]

BLAST of Carg18732 vs. NCBI nr
Match: XP_008461183.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g80880, mitochondrial [Cucumis melo] >XP_016902675.1 PREDICTED: pentatricopeptide repeat-containing protein At1g80880, mitochondrial [Cucumis melo] >XP_016902676.1 PREDICTED: pentatricopeptide repeat-containing protein At1g80880, mitochondrial [Cucumis melo])

HSP 1 Score: 683.7 bits (1763), Expect = 5.1e-193
Identity = 460/546 (84.25%), Postives = 488/546 (89.38%), Query Frame = 0


Query: 1   MACLSSIARGLSRNTPLPFRQLLQLISFKIPDSPSQAFHQTLLLPSQSARQFSALPFCSQ 60
           MACLSSIAR L R  PLPF  LL L    I DSP QAF QTL L S  A QFSALP  SQ
Sbjct: 1   MACLSSIARRLCRIHPLPFHHLLYLNRLSIRDSPFQAFRQTLCLRSLFAHQFSALPSFSQ 60

Query: 61  KVAHPFHFDTVRFQNHRPNDARSAEFVELLKRAARLPSEVEAIAALGEFDVQADSNLVYS 120
           KV   F FDT RF+N+R +DA +A F+EL KR A LPSEVEA+AAL EFDVQADS+LVYS
Sbjct: 61  KVGDQFQFDTGRFKNYRQSDACNARFIELFKRVALLPSEVEAVAALDEFDVQADSDLVYS 120

Query: 121 AIWVLRDDWKSSFLAFKWGEKWGSIDEEICNLMIWVLGNHKKFSTAWCLIREFHGSLLNS 180
           AIWVLRDDWKSSFLAFKWGEKWG+IDEEICNLMIWVLGNHKKFSTAWCLIRE HGSLLNS
Sbjct: 121 AIWVLRDDWKSSFLAFKWGEKWGAIDEEICNLMIWVLGNHKKFSTAWCLIRELHGSLLNS 180

Query: 181 RQAMLVMIDRYAHANEANKAIKTFHMMEKFRLTPDQEAFHALLNSLCKYGNIEEAEEFML 240
           RQAMLVMIDRYA+ANEA+KAIKTFHMMEKFRLTPDQEAFHALLNSLCKYGNIEEAEEFM 
Sbjct: 181 RQAMLVMIDRYAYANEASKAIKTFHMMEKFRLTPDQEAFHALLNSLCKYGNIEEAEEFMF 240

Query: 241 VNKKLFPLETESFNIILNGWCNVSVDVFEAKRIWREMSKCCILPDSTSYTLMISCFSRTG 300
           VNKKLFPLETESFNIILNGWCNV+VDVFEAKRIWREMSKCCILPDSTSYT MISCFS+ G
Sbjct: 241 VNKKLFPLETESFNIILNGWCNVTVDVFEAKRIWREMSKCCILPDSTSYTHMISCFSKNG 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADSEMSFELLKQIRQNGLGP 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ADS+MSFELLK++RQ+GLGP
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAADSKMSFELLKRMRQDGLGP 420

Query: 421 TEATFIIMFNKSFELEQPDYALKAWEEMKRYEISPNSEHYAVLIQGLATYGLLKQARELY 480
            E TF+IMFNKSFELEQP+YAL AW EMKRY++ P+SEHY+VLIQGLAT G LK+ARELY
Sbjct: 421 IEVTFLIMFNKSFELEQPEYALNAWVEMKRYKVFPSSEHYSVLIQGLATCGHLKKARELY 480

Query: 481 DQMTSHGFILHPKIKMLVKEPELRSIEEATQQVTHNKKGKFF-HRKGSMMRWKSHKQQSR 540
           D+M  HGFI HPKIK L+KEP+  SI+EA QQV HNKKGKF  HRKGS MRWKSHKQQS+
Sbjct: 481 DEMILHGFIAHPKIKTLLKEPDSGSIDEARQQVRHNKKGKFLSHRKGSTMRWKSHKQQSK 540

Query: 541 DDASIE 546
            DAS E
Sbjct: 541 RDASFE 546

[Close]

BLAST of Carg18732 vs. NCBI nr
Match: XP_011659500.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g80880, mitochondrial [Cucumis sativus] >XP_011659501.1 PREDICTED: pentatricopeptide repeat-containing protein At1g80880, mitochondrial [Cucumis sativus] >KGN45215.1 hypothetical protein Csa_7G431960 [Cucumis sativus])

HSP 1 Score: 660.6 bits (1703), Expect = 4.6e-186
Identity = 450/546 (82.42%), Postives = 481/546 (88.10%), Query Frame = 0


Query: 1   MACLSSIARGLSRNTPLPFRQLLQLISFKIPDSPSQAFHQTLLLPSQSARQFSALPFCSQ 60
           MA LSSIAR L R  PLPF  LL L   +IPDSP QAFHQT  L S  ARQFSALP  SQ
Sbjct: 1   MASLSSIARRLCRIHPLPFHHLLYLNRLRIPDSPFQAFHQTFSLHSFFARQFSALPSFSQ 60

Query: 61  KVAHPFHFDTVRFQNHRPNDARSAEFVELLKRAARLPSEVEAIAALGEFDVQADSNLVYS 120
           K+  PF FDT RFQN+R +DA +A F+EL KR A LPSEVEA+AAL EFDV+AD +LVYS
Sbjct: 61  KLGDPFLFDTGRFQNYRQSDACNARFIELFKRVALLPSEVEAVAALDEFDVKADLDLVYS 120

Query: 121 AIWVLRDDWKSSFLAFKWGEKWGSIDEEICNLMIWVLGNHKKFSTAWCLIREFHGSLLNS 180
           AIWVLRDDWKSS LAFKWGEK G+IDEEICNLMIWVLGNHKKFSTAW LIRE HGSLLNS
Sbjct: 121 AIWVLRDDWKSSLLAFKWGEKVGAIDEEICNLMIWVLGNHKKFSTAWSLIRELHGSLLNS 180

Query: 181 RQAMLVMIDRYAHANEANKAIKTFHMMEKFRLTPDQEAFHALLNSLCKYGNIEEAEEFML 240
            QAMLVMIDRYA+ANEA+KAIKTFHMMEKFRLTPDQEAFH LLNSLCKYGNIEEAEEFM 
Sbjct: 181 MQAMLVMIDRYAYANEASKAIKTFHMMEKFRLTPDQEAFHVLLNSLCKYGNIEEAEEFMF 240

Query: 241 VNKKLFPLETESFNIILNGWCNVSVDVFEAKRIWREMSKCCILPDSTSYTLMISCFSRTG 300
           VNKKLFPL TESFNIILNGWCNV+VDVFEAKRIWREMSKCCILPDSTSYT MISCFS+ G
Sbjct: 241 VNKKLFPLGTESFNIILNGWCNVTVDVFEAKRIWREMSKCCILPDSTSYTHMISCFSKNG 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADSEMSFELLKQIRQNGLGP 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ADS+MSFELLK++RQ+GLGP
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAADSKMSFELLKRMRQDGLGP 420

Query: 421 TEATFIIMFNKSFELEQPDYALKAWEEMKRYEISPNSEHYAVLIQGLATYGLLKQARELY 480
           TE TF+IMFNKSFELE+P+YAL  W EMKRYE+ P+ EHY+VLIQGLAT G LK+ARELY
Sbjct: 421 TEGTFLIMFNKSFELEEPEYALNVWVEMKRYEVFPSCEHYSVLIQGLATCGHLKKARELY 480

Query: 481 DQMTSHGFILHPKIKMLVKEPELRSIEEATQQVTHNKKGKFF-HRKGSMMRWKSHKQQSR 540
           D+M  HGFI HPKIK L+KEP+L SI+EA QQV HN KGKF  HRKG  MRWKSHKQ+S+
Sbjct: 481 DEMILHGFIAHPKIKTLLKEPDLGSIDEARQQVRHNNKGKFIPHRKGRTMRWKSHKQRSK 540

Query: 541 DDASIE 546
             AS E
Sbjct: 541 GAASFE 546

[Close]

BLAST of Carg18732 vs. TAIR10
Match: AT1G80880.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 296.2 bits (757), Expect = 4.1e-80
Identity = 251/423 (59.34%), Postives = 321/423 (75.89%), Query Frame = 0


Query: 87  VELLKRAARLPSEVEAIAALGEFDVQADSNLVYSAIWVLRDDWKSSFLAFKWGEKWGSID 146
           ++L+++ + L SE +A+A+L +     + +  YS IW LRD+W+ +FLAFKWGEK G  D
Sbjct: 95  IDLIRQVSELESEADAMASLEDSSFDLNHDSFYSLIWELRDEWRLAFLAFKWGEKRGCDD 154

Query: 147 EEICNLMIWVLGNHKKFSTAWCLIREFHGSLLNSRQAMLVMIDRYAHANEANKAIKTFHM 206
           ++ C+LMIWVLGNH+KF+ AWCLIR+      ++R+AM +M+DRYA AN+ ++AI+TF +
Sbjct: 155 QKSCDLMIWVLGNHQKFNIAWCLIRDMFNVSKDTRKAMFLMMDRYAAANDTSQAIRTFDI 214

Query: 207 MEKFRLTPDQEAFHALLNSLCKYGNIEEAEEFMLVNKKLFPLETESFNIILNGWCNVSVD 266
           M+KF+ TP  EAF  LL +LC++G+IE+AEEFML +KKLFP++ E FN+ILNGWCN+  D
Sbjct: 215 MDKFKHTPYDEAFQGLLCALCRHGHIEKAEEFMLASKKLFPVDVEGFNVILNGWCNIWTD 274

Query: 267 VFEAKRIWREMSKCCILPDSTSYTLMISCFSRTGXXXXXXXXXXXXXXXXXXXXXXXXXX 326
           V EAKRIWREM   CI P+  SY+ MISCFS+ G   XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 275 VTEAKRIWREMGNYCITPNKDSYSHMISCFSKVGNLFXXXXXXXXXXXXXXXXXXXXXXX 334

Query: 327 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 386
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 335 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 394

Query: 387 XXXXXXXXXXXXXGADSEMSFELLKQIRQNGLGPTEATFIIMFNKSFELEQPDYALKAWE 446
           XXXXXXXXXXXXX                   GPTE TF+++  K F+ +QP+ ALK W 
Sbjct: 395 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPTEETFLLILGKLFKGKQPENALKIWA 454

Query: 447 EMKRYEISPNSEHYAVLIQGLATYGLLKQARELYDQMTSHGFILHPKIKMLVKEPELRSI 506
           EM R+EI  N   Y   IQGL + G L++ARE+Y +M S GF+ +P ++ L++E +++ +
Sbjct: 455 EMDRFEIVANPALYLATIQGLLSCGWLEKAREIYSEMKSKGFVGNPMLQKLLEEQKVKGV 514

Query: 507 EEA 510
            ++
Sbjct: 515 RKS 517

[Close]

BLAST of Carg18732 vs. TAIR10
Match: AT5G15010.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 154.8 bits (390), Expect = 1.5e-37
Identity = 80/200 (40.00%), Postives = 120/200 (60.00%), Query Frame = 0


Query: 106 LGEFDVQADSNLVYSAIWVLRDDWKSSFLAFKWGEKWGSIDEEI--CNLMIWVLGNHKKF 165
           L E DV+  + LV   +  +R+DW+++F  F W  K       +   + MI +LG  +KF
Sbjct: 118 LEECDVKPSNELVVEILSRVRNDWETAFTFFVWAGKQQGYVRSVREYHSMISILGKMRKF 177

Query: 166 STAWCLI---REFHGSLLNSRQAMLVMIDRYAHANEANKAIKTFHMMEKFRLTPDQEAFH 225
            TAW LI   R+F  SL+NS Q +L+MI +Y   ++  KAI TFH  ++F+L    + F 
Sbjct: 178 DTAWTLIDEMRKFSPSLVNS-QTLLIMIRKYCAVHDVGKAINTFHAYKRFKLEMGIDDFQ 237

Query: 226 ALLNSLCKYGNIEEAEEFMLVNKKLFPLETESFNIILNGWCNVSVDVFEAKRIWREMSKC 285
           +LL++LC+Y N+ +A   +  NK  +P + +SFNI+LNGWCNV     EA+R+W EM   
Sbjct: 238 SLLSALCRYKNVSDAGHLIFCNKDKYPFDAKSFNIVLNGWCNVIGSPREAERVWMEMGNV 297

Query: 286 CILPDSTSYTLMISCFSRTG 301
            +  D  SY+ MISC+S+ G
Sbjct: 298 GVKHDVVSYSSMISCYSKGG 316

[Close]

BLAST of Carg18732 vs. TAIR10
Match: AT5G65820.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 80.5 bits (197), Expect = 3.6e-15
Identity = 57/214 (26.64%), Postives = 99/214 (46.26%), Query Frame = 0


Query: 75  NHRPNDARSAEFVELLKRAARL----PSEVEAI-AALGEFDVQADSNLVYSAIWVLRDDW 134
           N R  +++  EF   ++++ R+     S V  +  AL E  V+    L+   +    D  
Sbjct: 68  NDRTKNSKYDEFASDVEKSYRILRKFHSRVPKLELALNESGVELRPGLIERVLNRCGDAG 127

Query: 135 KSSFLAFKWGEKWGSI--DEEICNLMIWVLGNHKKFSTAWCLIREF--HGSLLNSRQAML 194
              +  F W  K        E+   M+ +L   ++F   W LI E       L   +  +
Sbjct: 128 NLGYRFFVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFV 187

Query: 195 VMIDRYAHANEANKAIKTFHMMEKFRLTPDQEAFHALLNSLCKYGNIEEAEEFMLVNKKL 254
           V++ R+A A+   KAI+    M KF   PD+  F  LL++LCK+G++++A +     +  
Sbjct: 188 VLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMR 247

Query: 255 FPLETESFNIILNGWCNVSVDVFEAKRIWREMSK 280
           FP+    F  +L GWC V   + EAK +  +M++
Sbjct: 248 FPVNLRYFTSLLYGWCRVG-KMMEAKYVLVQMNE 280

[Close]

BLAST of Carg18732 vs. TAIR10
Match: AT3G49730.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 67.8 bits (164), Expect = 2.4e-11
Identity = 41/147 (27.89%), Postives = 67/147 (45.58%), Query Frame = 0


Query: 105 ALGEFDVQADSNLVYSAIWVLRDDWKSSFLAFKWGEKWGSI--DEEICNLMIWVLGNHKK 164
           AL E  +     L+   +    D     +  F W  K        E+C  M+ +L   ++
Sbjct: 87  ALNESGIDLRPGLIIRVLSRCGDAGNLGYRFFLWATKQPGYFHSYEVCKSMVMILSKMRQ 146

Query: 165 FSTAWCLIREFH--GSLLNSRQAMLVMIDRYAHANEANKAIKTFHMMEKFRLTPDQEAFH 224
           F   W LI E       L   +  +V++ R+A AN   KA++    M K+ L PD+  F 
Sbjct: 147 FGAVWGLIEEMRKTNPELIEPELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFG 206

Query: 225 ALLNSLCKYGNIEEAEEFMLVNKKLFP 248
            LL++LCK G+++EA +     ++ FP
Sbjct: 207 CLLDALCKNGSVKEASKVFEDMREKFP 233

[Close]

BLAST of Carg18732 vs. TAIR10
Match: AT1G77360.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 67.0 bits (162), Expect = 4.1e-11
Identity = 52/244 (21.31%), Postives = 113/244 (46.31%), Query Frame = 0


Query: 19  FRQLLQLISFKIPDSPSQA-----FHQTLLLPSQSARQFSALPFCSQKVAHPFHFDTVRF 78
           FRQL+   SF   +  S A     F+ T+ + ++ +R      FC +       F + R 
Sbjct: 11  FRQLVNFFSFMRWECSSSATVWVRFNMTIRIINRQSR------FCCKS------FLSARL 70

Query: 79  QNHRPNDARSAEFVELLKRAARLPSEVEAIAALGEFDVQADSNLVYSAIWVLRDDWKSSF 138
            +        A+  + + +      ++   +AL +  ++    +V   +   R+    ++
Sbjct: 71  YSSSEQVRDVADVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVEDVLNRFRNAGLLTY 130

Query: 139 LAFKWGEKWGSIDEEI--CNLMIWVLGNHKKFSTAWCLIREFHGSLLNSRQAMLVMIDRY 198
             F+W EK    +  +   ++MI      +++   W LI       + + +   +++ +Y
Sbjct: 131 RFFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKMLNVETFCIVMRKY 190

Query: 199 AHANEANKAIKTFHMMEKFRLTPDQEAFHALLNSLCKYGNIEEAEEFMLVNKKLFPLETE 256
           A A + ++AI  F++MEK+ L P+  AF+ LL++LCK  N+ +A+E     +  F  +++
Sbjct: 191 ARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMRDRFTPDSK 242

[Close]

BLAST of Carg18732 vs. Swiss-Prot
Match: sp|Q9SAH2|PP137_ARATH (Pentatricopeptide repeat-containing protein At1g80880, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g80880 PE=2 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 7.4e-79
Identity = 251/423 (59.34%), Postives = 321/423 (75.89%), Query Frame = 0


Query: 87  VELLKRAARLPSEVEAIAALGEFDVQADSNLVYSAIWVLRDDWKSSFLAFKWGEKWGSID 146
           ++L+++ + L SE +A+A+L +     + +  YS IW LRD+W+ +FLAFKWGEK G  D
Sbjct: 95  IDLIRQVSELESEADAMASLEDSSFDLNHDSFYSLIWELRDEWRLAFLAFKWGEKRGCDD 154

Query: 147 EEICNLMIWVLGNHKKFSTAWCLIREFHGSLLNSRQAMLVMIDRYAHANEANKAIKTFHM 206
           ++ C+LMIWVLGNH+KF+ AWCLIR+      ++R+AM +M+DRYA AN+ ++AI+TF +
Sbjct: 155 QKSCDLMIWVLGNHQKFNIAWCLIRDMFNVSKDTRKAMFLMMDRYAAANDTSQAIRTFDI 214

Query: 207 MEKFRLTPDQEAFHALLNSLCKYGNIEEAEEFMLVNKKLFPLETESFNIILNGWCNVSVD 266
           M+KF+ TP  EAF  LL +LC++G+IE+AEEFML +KKLFP++ E FN+ILNGWCN+  D
Sbjct: 215 MDKFKHTPYDEAFQGLLCALCRHGHIEKAEEFMLASKKLFPVDVEGFNVILNGWCNIWTD 274

Query: 267 VFEAKRIWREMSKCCILPDSTSYTLMISCFSRTGXXXXXXXXXXXXXXXXXXXXXXXXXX 326
           V EAKRIWREM   CI P+  SY+ MISCFS+ G   XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 275 VTEAKRIWREMGNYCITPNKDSYSHMISCFSKVGNLFXXXXXXXXXXXXXXXXXXXXXXX 334

Query: 327 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 386
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 335 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 394

Query: 387 XXXXXXXXXXXXXGADSEMSFELLKQIRQNGLGPTEATFIIMFNKSFELEQPDYALKAWE 446
           XXXXXXXXXXXXX                   GPTE TF+++  K F+ +QP+ ALK W 
Sbjct: 395 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPTEETFLLILGKLFKGKQPENALKIWA 454

Query: 447 EMKRYEISPNSEHYAVLIQGLATYGLLKQARELYDQMTSHGFILHPKIKMLVKEPELRSI 506
           EM R+EI  N   Y   IQGL + G L++ARE+Y +M S GF+ +P ++ L++E +++ +
Sbjct: 455 EMDRFEIVANPALYLATIQGLLSCGWLEKAREIYSEMKSKGFVGNPMLQKLLEEQKVKGV 514

Query: 507 EEA 510
            ++
Sbjct: 515 RKS 517

[Close]

BLAST of Carg18732 vs. Swiss-Prot
Match: sp|Q9LFQ4|PP383_ARATH (Pentatricopeptide repeat-containing protein At5g15010, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g15010 PE=2 SV=2)

HSP 1 Score: 154.8 bits (390), Expect = 2.7e-36
Identity = 80/200 (40.00%), Postives = 120/200 (60.00%), Query Frame = 0


Query: 106 LGEFDVQADSNLVYSAIWVLRDDWKSSFLAFKWGEKWGSIDEEI--CNLMIWVLGNHKKF 165
           L E DV+  + LV   +  +R+DW+++F  F W  K       +   + MI +LG  +KF
Sbjct: 118 LEECDVKPSNELVVEILSRVRNDWETAFTFFVWAGKQQGYVRSVREYHSMISILGKMRKF 177

Query: 166 STAWCLI---REFHGSLLNSRQAMLVMIDRYAHANEANKAIKTFHMMEKFRLTPDQEAFH 225
            TAW LI   R+F  SL+NS Q +L+MI +Y   ++  KAI TFH  ++F+L    + F 
Sbjct: 178 DTAWTLIDEMRKFSPSLVNS-QTLLIMIRKYCAVHDVGKAINTFHAYKRFKLEMGIDDFQ 237

Query: 226 ALLNSLCKYGNIEEAEEFMLVNKKLFPLETESFNIILNGWCNVSVDVFEAKRIWREMSKC 285
           +LL++LC+Y N+ +A   +  NK  +P + +SFNI+LNGWCNV     EA+R+W EM   
Sbjct: 238 SLLSALCRYKNVSDAGHLIFCNKDKYPFDAKSFNIVLNGWCNVIGSPREAERVWMEMGNV 297

Query: 286 CILPDSTSYTLMISCFSRTG 301
            +  D  SY+ MISC+S+ G
Sbjct: 298 GVKHDVVSYSSMISCYSKGG 316

[Close]

BLAST of Carg18732 vs. Swiss-Prot
Match: sp|Q9FH87|PP447_ARATH (Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis thaliana OX=3702 GN=At5g65820 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 6.4e-14
Identity = 57/214 (26.64%), Postives = 99/214 (46.26%), Query Frame = 0


Query: 75  NHRPNDARSAEFVELLKRAARL----PSEVEAI-AALGEFDVQADSNLVYSAIWVLRDDW 134
           N R  +++  EF   ++++ R+     S V  +  AL E  V+    L+   +    D  
Sbjct: 68  NDRTKNSKYDEFASDVEKSYRILRKFHSRVPKLELALNESGVELRPGLIERVLNRCGDAG 127

Query: 135 KSSFLAFKWGEKWGSI--DEEICNLMIWVLGNHKKFSTAWCLIREF--HGSLLNSRQAML 194
              +  F W  K        E+   M+ +L   ++F   W LI E       L   +  +
Sbjct: 128 NLGYRFFVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFV 187

Query: 195 VMIDRYAHANEANKAIKTFHMMEKFRLTPDQEAFHALLNSLCKYGNIEEAEEFMLVNKKL 254
           V++ R+A A+   KAI+    M KF   PD+  F  LL++LCK+G++++A +     +  
Sbjct: 188 VLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMR 247

Query: 255 FPLETESFNIILNGWCNVSVDVFEAKRIWREMSK 280
           FP+    F  +L GWC V   + EAK +  +M++
Sbjct: 248 FPVNLRYFTSLLYGWCRVG-KMMEAKYVLVQMNE 280

[Close]

BLAST of Carg18732 vs. Swiss-Prot
Match: sp|P0C8A0|PP275_ARATH (Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana OX=3702 GN=At3g49730 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.3e-10
Identity = 41/147 (27.89%), Postives = 67/147 (45.58%), Query Frame = 0


Query: 105 ALGEFDVQADSNLVYSAIWVLRDDWKSSFLAFKWGEKWGSI--DEEICNLMIWVLGNHKK 164
           AL E  +     L+   +    D     +  F W  K        E+C  M+ +L   ++
Sbjct: 87  ALNESGIDLRPGLIIRVLSRCGDAGNLGYRFFLWATKQPGYFHSYEVCKSMVMILSKMRQ 146

Query: 165 FSTAWCLIREFH--GSLLNSRQAMLVMIDRYAHANEANKAIKTFHMMEKFRLTPDQEAFH 224
           F   W LI E       L   +  +V++ R+A AN   KA++    M K+ L PD+  F 
Sbjct: 147 FGAVWGLIEEMRKTNPELIEPELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFG 206

Query: 225 ALLNSLCKYGNIEEAEEFMLVNKKLFP 248
            LL++LCK G+++EA +     ++ FP
Sbjct: 207 CLLDALCKNGSVKEASKVFEDMREKFP 233

[Close]

BLAST of Carg18732 vs. Swiss-Prot
Match: sp|Q9FVX2|PP129_ARATH (Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g77360 PE=2 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 7.3e-10
Identity = 52/244 (21.31%), Postives = 113/244 (46.31%), Query Frame = 0


Query: 19  FRQLLQLISFKIPDSPSQA-----FHQTLLLPSQSARQFSALPFCSQKVAHPFHFDTVRF 78
           FRQL+   SF   +  S A     F+ T+ + ++ +R      FC +       F + R 
Sbjct: 11  FRQLVNFFSFMRWECSSSATVWVRFNMTIRIINRQSR------FCCKS------FLSARL 70

Query: 79  QNHRPNDARSAEFVELLKRAARLPSEVEAIAALGEFDVQADSNLVYSAIWVLRDDWKSSF 138
            +        A+  + + +      ++   +AL +  ++    +V   +   R+    ++
Sbjct: 71  YSSSEQVRDVADVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVEDVLNRFRNAGLLTY 130

Query: 139 LAFKWGEKWGSIDEEI--CNLMIWVLGNHKKFSTAWCLIREFHGSLLNSRQAMLVMIDRY 198
             F+W EK    +  +   ++MI      +++   W LI       + + +   +++ +Y
Sbjct: 131 RFFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKMLNVETFCIVMRKY 190

Query: 199 AHANEANKAIKTFHMMEKFRLTPDQEAFHALLNSLCKYGNIEEAEEFMLVNKKLFPLETE 256
           A A + ++AI  F++MEK+ L P+  AF+ LL++LCK  N+ +A+E     +  F  +++
Sbjct: 191 ARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMRDRFTPDSK 242

[Close]

BLAST of Carg18732 vs. TrEMBL
Match: tr|A0A1S3CE43|A0A1S3CE43_CUCME (pentatricopeptide repeat-containing protein At1g80880, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103499843 PE=4 SV=1)

HSP 1 Score: 683.7 bits (1763), Expect = 3.4e-193
Identity = 460/546 (84.25%), Postives = 488/546 (89.38%), Query Frame = 0


Query: 1   MACLSSIARGLSRNTPLPFRQLLQLISFKIPDSPSQAFHQTLLLPSQSARQFSALPFCSQ 60
           MACLSSIAR L R  PLPF  LL L    I DSP QAF QTL L S  A QFSALP  SQ
Sbjct: 1   MACLSSIARRLCRIHPLPFHHLLYLNRLSIRDSPFQAFRQTLCLRSLFAHQFSALPSFSQ 60

Query: 61  KVAHPFHFDTVRFQNHRPNDARSAEFVELLKRAARLPSEVEAIAALGEFDVQADSNLVYS 120
           KV   F FDT RF+N+R +DA +A F+EL KR A LPSEVEA+AAL EFDVQADS+LVYS
Sbjct: 61  KVGDQFQFDTGRFKNYRQSDACNARFIELFKRVALLPSEVEAVAALDEFDVQADSDLVYS 120

Query: 121 AIWVLRDDWKSSFLAFKWGEKWGSIDEEICNLMIWVLGNHKKFSTAWCLIREFHGSLLNS 180
           AIWVLRDDWKSSFLAFKWGEKWG+IDEEICNLMIWVLGNHKKFSTAWCLIRE HGSLLNS
Sbjct: 121 AIWVLRDDWKSSFLAFKWGEKWGAIDEEICNLMIWVLGNHKKFSTAWCLIRELHGSLLNS 180

Query: 181 RQAMLVMIDRYAHANEANKAIKTFHMMEKFRLTPDQEAFHALLNSLCKYGNIEEAEEFML 240
           RQAMLVMIDRYA+ANEA+KAIKTFHMMEKFRLTPDQEAFHALLNSLCKYGNIEEAEEFM 
Sbjct: 181 RQAMLVMIDRYAYANEASKAIKTFHMMEKFRLTPDQEAFHALLNSLCKYGNIEEAEEFMF 240

Query: 241 VNKKLFPLETESFNIILNGWCNVSVDVFEAKRIWREMSKCCILPDSTSYTLMISCFSRTG 300
           VNKKLFPLETESFNIILNGWCNV+VDVFEAKRIWREMSKCCILPDSTSYT MISCFS+ G
Sbjct: 241 VNKKLFPLETESFNIILNGWCNVTVDVFEAKRIWREMSKCCILPDSTSYTHMISCFSKNG 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADSEMSFELLKQIRQNGLGP 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ADS+MSFELLK++RQ+GLGP
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAADSKMSFELLKRMRQDGLGP 420

Query: 421 TEATFIIMFNKSFELEQPDYALKAWEEMKRYEISPNSEHYAVLIQGLATYGLLKQARELY 480
            E TF+IMFNKSFELEQP+YAL AW EMKRY++ P+SEHY+VLIQGLAT G LK+ARELY
Sbjct: 421 IEVTFLIMFNKSFELEQPEYALNAWVEMKRYKVFPSSEHYSVLIQGLATCGHLKKARELY 480

Query: 481 DQMTSHGFILHPKIKMLVKEPELRSIEEATQQVTHNKKGKFF-HRKGSMMRWKSHKQQSR 540
           D+M  HGFI HPKIK L+KEP+  SI+EA QQV HNKKGKF  HRKGS MRWKSHKQQS+
Sbjct: 481 DEMILHGFIAHPKIKTLLKEPDSGSIDEARQQVRHNKKGKFLSHRKGSTMRWKSHKQQSK 540

Query: 541 DDASIE 546
            DAS E
Sbjct: 541 RDASFE 546

[Close]

BLAST of Carg18732 vs. TrEMBL
Match: tr|A0A0A0K678|A0A0A0K678_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G431960 PE=4 SV=1)

HSP 1 Score: 660.6 bits (1703), Expect = 3.0e-186
Identity = 450/546 (82.42%), Postives = 481/546 (88.10%), Query Frame = 0


Query: 1   MACLSSIARGLSRNTPLPFRQLLQLISFKIPDSPSQAFHQTLLLPSQSARQFSALPFCSQ 60
           MA LSSIAR L R  PLPF  LL L   +IPDSP QAFHQT  L S  ARQFSALP  SQ
Sbjct: 1   MASLSSIARRLCRIHPLPFHHLLYLNRLRIPDSPFQAFHQTFSLHSFFARQFSALPSFSQ 60

Query: 61  KVAHPFHFDTVRFQNHRPNDARSAEFVELLKRAARLPSEVEAIAALGEFDVQADSNLVYS 120
           K+  PF FDT RFQN+R +DA +A F+EL KR A LPSEVEA+AAL EFDV+AD +LVYS
Sbjct: 61  KLGDPFLFDTGRFQNYRQSDACNARFIELFKRVALLPSEVEAVAALDEFDVKADLDLVYS 120

Query: 121 AIWVLRDDWKSSFLAFKWGEKWGSIDEEICNLMIWVLGNHKKFSTAWCLIREFHGSLLNS 180
           AIWVLRDDWKSS LAFKWGEK G+IDEEICNLMIWVLGNHKKFSTAW LIRE HGSLLNS
Sbjct: 121 AIWVLRDDWKSSLLAFKWGEKVGAIDEEICNLMIWVLGNHKKFSTAWSLIRELHGSLLNS 180

Query: 181 RQAMLVMIDRYAHANEANKAIKTFHMMEKFRLTPDQEAFHALLNSLCKYGNIEEAEEFML 240
            QAMLVMIDRYA+ANEA+KAIKTFHMMEKFRLTPDQEAFH LLNSLCKYGNIEEAEEFM 
Sbjct: 181 MQAMLVMIDRYAYANEASKAIKTFHMMEKFRLTPDQEAFHVLLNSLCKYGNIEEAEEFMF 240

Query: 241 VNKKLFPLETESFNIILNGWCNVSVDVFEAKRIWREMSKCCILPDSTSYTLMISCFSRTG 300
           VNKKLFPL TESFNIILNGWCNV+VDVFEAKRIWREMSKCCILPDSTSYT MISCFS+ G
Sbjct: 241 VNKKLFPLGTESFNIILNGWCNVTVDVFEAKRIWREMSKCCILPDSTSYTHMISCFSKNG 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADSEMSFELLKQIRQNGLGP 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ADS+MSFELLK++RQ+GLGP
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAADSKMSFELLKRMRQDGLGP 420

Query: 421 TEATFIIMFNKSFELEQPDYALKAWEEMKRYEISPNSEHYAVLIQGLATYGLLKQARELY 480
           TE TF+IMFNKSFELE+P+YAL  W EMKRYE+ P+ EHY+VLIQGLAT G LK+ARELY
Sbjct: 421 TEGTFLIMFNKSFELEEPEYALNVWVEMKRYEVFPSCEHYSVLIQGLATCGHLKKARELY 480

Query: 481 DQMTSHGFILHPKIKMLVKEPELRSIEEATQQVTHNKKGKFF-HRKGSMMRWKSHKQQSR 540
           D+M  HGFI HPKIK L+KEP+L SI+EA QQV HN KGKF  HRKG  MRWKSHKQ+S+
Sbjct: 481 DEMILHGFIAHPKIKTLLKEPDLGSIDEARQQVRHNNKGKFIPHRKGRTMRWKSHKQRSK 540

Query: 541 DDASIE 546
             AS E
Sbjct: 541 GAASFE 546

[Close]

BLAST of Carg18732 vs. TrEMBL
Match: tr|A0A2I4GIU2|A0A2I4GIU2_9ROSI (pentatricopeptide repeat-containing protein At1g80880, mitochondrial OS=Juglans regia OX=51240 GN=LOC109008254 PE=4 SV=1)

HSP 1 Score: 456.4 bits (1173), Expect = 8.7e-125
Identity = 353/558 (63.26%), Postives = 419/558 (75.09%), Query Frame = 0


Query: 1   MACLSSIARGLSRNTPLPFRQLLQLISFKIPDSPS--------------QAFHQTLLLPS 60
           MA L S+AR L R  P  F  L  L        PS              +AFHQT  LPS
Sbjct: 1   MAHLPSLARRLPRTDPHFFLPLSMLHPITRSPCPSPATTILQPFLRYLFRAFHQTRHLPS 60

Query: 61  QSARQFSAL-PFCSQKVAHPFHFDTVRFQ-NHRPNDARSAEFVELLKRAARLPSEVEAIA 120
              R+FS   PF +Q   +PF FD  +F+  H  +D     F+E+L+  ++ PSE +AI 
Sbjct: 61  PQTRRFSTFQPFSAQNYHYPFDFDNYKFKVTHGTHDPGLPRFLEMLRGVSQCPSEAKAIE 120

Query: 121 ALGEFDVQADSNLVYSAIWVLRDDWKSSFLAFKWGEKWGSIDEEICNLMIWVLGNHKKFS 180
           +L E  ++A+  +V SAIW  R++W+ +FLAFKWGEKWG  DE+ C LMIWVLGNH+KF+
Sbjct: 121 SLDESGIEANREIVCSAIWESREEWRLAFLAFKWGEKWGCTDEKACYLMIWVLGNHRKFN 180

Query: 181 TAWCLIREF--HGSLLNSRQAMLVMIDRYAHANEANKAIKTFHMMEKFRLTPDQEAFHAL 240
            AWCLIR+   H S +++R+AML+MIDRYA AN+  KAI+TFH+ME FRLTPDQEAFH +
Sbjct: 181 IAWCLIRDMHTHRSKMDTRRAMLIMIDRYASANDPCKAIRTFHVMETFRLTPDQEAFHTV 240

Query: 241 LNSLCKYGNIEEAEEFMLVNKKLFPLETESFNIILNGWCNVSVDVFEAKRIWREMSKCCI 300
           L +LCKYGNIEEAEEFM VNKKLFPLETE FNIILN WCNVS+DVFEAKR+WREMSKCCI
Sbjct: 241 LKALCKYGNIEEAEEFMFVNKKLFPLETEGFNIILNAWCNVSLDVFEAKRVWREMSKCCI 300

Query: 301 LPDSTSYTLMISCFSRTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
            PD+TSYTLMISCFS+ G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 TPDATSYTLMISCFSKVGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAD 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  A 
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSAG 420

Query: 421 SEMSFELLKQIRQNGLGPTEATFIIMFNKSFELEQPDYALKAWEEMKRYEISPNSEHYAV 480
            E + E+L ++++ GLGPT  TF+I+  K F+L QPD+ALK + EMK+YEI PNS HY+V
Sbjct: 421 FEGTLEVLNRMKKAGLGPTGDTFLIIIGKFFKLGQPDHALKVFMEMKQYEIVPNSLHYSV 480

Query: 481 LIQGLATYGLLKQARELYDQMTSHGFILHPKIKMLVKEPELRSIEEATQQVTH-NKKGKF 540
           L+QGLAT G L +ARE Y +M S+GF+  PK+K L+KEP   S+ E  +QV   N+  + 
Sbjct: 481 LVQGLATCGWLIKAREFYAEMRSNGFLEDPKLKKLLKEPVRCSVHEGKRQVQRVNRDERA 540

[Close]

BLAST of Carg18732 vs. TrEMBL
Match: tr|A0A2P4LEF9|A0A2P4LEF9_QUESU (Pentatricopeptide repeat-containing protein, mitochondrial OS=Quercus suber OX=58331 GN=CFP56_34421 PE=4 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 6.5e-120
Identity = 334/549 (60.84%), Postives = 414/549 (75.41%), Query Frame = 0


Query: 4   LSSIARGLSRNTPLPFRQLLQLISFKIPDSPS-----------QAFHQTLLLPSQSARQF 63
           L S+AR L R  P  F  LL  I   +  SPS            A HQT L+P+     F
Sbjct: 6   LPSLARRLQRTPPHLF--LLSHIIPSLSSSPSPSSQLPSHFLFHALHQTSLIPTLQTHHF 65

Query: 64  SAL-PFCSQKVAHPFHFDTVRFQNHRPNDARSAEFVELLKRAARLPSEVEAIAALGEFDV 123
           S   PF +  +  PF F+  RF+ + P+D     F+ELL+     PS+ EA+ +L +  +
Sbjct: 66  STFQPFSAHNLDDPFDFNHPRFRTYDPHDRFLLRFLELLREVPHYPSKAEAMTSLDDSGI 125

Query: 124 QADSNLVYSAIWVLRDDWKSSFLAFKWGEKWGSIDEEICNLMIWVLGNHKKFSTAWCLIR 183
           + +S ++YSA+W LR++W+ + LAF+W E+WG  DE+  NLMIWVLGNH+KF+TAWCLIR
Sbjct: 126 EVNSEMIYSAVWELREEWRLALLAFRWSEQWGCADEKSSNLMIWVLGNHRKFNTAWCLIR 185

Query: 184 EFHGSLLNSRQAMLVMIDRYAHANEANKAIKTFHMMEKFRLTPDQEAFHALLNSLCKYGN 243
           + H S +++R+AML+MIDRYA AN+  KAI TFH+MEKFRL+PDQ+AFH +LN+LCKYGN
Sbjct: 186 DMHQSKVDTRRAMLIMIDRYASANDPCKAIGTFHIMEKFRLSPDQQAFHTVLNALCKYGN 245

Query: 244 IEEAEEFMLVNKKLFPLETESFNIILNGWCNVSVDVFEAKRIWREMSKCCILPDSTSYTL 303
           +EEAEEFM +NKKLFPLETE FNIILNGWCN+S+D+FEAKR+WREMSKCCI PD+TSYT 
Sbjct: 246 VEEAEEFMFLNKKLFPLETEGFNIILNGWCNISLDIFEAKRVWREMSKCCITPDATSYTN 305

Query: 304 MISCFSRTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 363
           MISCF++ GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 306 MISCFAKVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 365

Query: 364 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADSEMSFELLK 423
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GA  E + E+L 
Sbjct: 366 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGAGFEGTLEILN 425

Query: 424 QIRQNGLGPTEATFIIMFNKSFELEQPDYALKAWEEMKRYEISPNSEHYAVLIQGLATYG 483
           ++R+ GLGPT  + +I+ ++ F+L QP+ ALK W EMK+YE+  +  H +VL+QGLAT G
Sbjct: 426 RMRKAGLGPTGDSLLIILSRFFKLGQPENALKIWVEMKQYEVELSHTHQSVLVQGLATCG 485

Query: 484 LLKQARELYDQMTSHGFILHPKIKMLVKEPELRSIEEATQQVTH-NKKGKFFHRKGSMMR 540
            L +ARE Y  M S GF   PK+K L+KEP   S+ +  QQV   N++G   H KG+ +R
Sbjct: 486 WLTKAREFYADMRSKGFAEDPKLKKLLKEPARDSMHKGKQQVQRLNREGWLNHGKGTRVR 545

[Close]

BLAST of Carg18732 vs. TrEMBL
Match: tr|A0A2P4LEG7|A0A2P4LEG7_QUESU (Pentatricopeptide repeat-containing protein, mitochondrial OS=Quercus suber OX=58331 GN=CFP56_34421 PE=4 SV=1)

HSP 1 Score: 426.0 bits (1094), Expect = 1.3e-115
Identity = 328/538 (60.97%), Postives = 405/538 (75.28%), Query Frame = 0


Query: 4   LSSIARGLSRNTPLPFRQLLQLISFKIPDSPS-----------QAFHQTLLLPSQSARQF 63
           L S+AR L R  P  F  LL  I   +  SPS            A HQT L+P+     F
Sbjct: 6   LPSLARRLQRTPPHLF--LLSHIIPSLSSSPSPSSQLPSHFLFHALHQTSLIPTLQTHHF 65

Query: 64  SAL-PFCSQKVAHPFHFDTVRFQNHRPNDARSAEFVELLKRAARLPSEVEAIAALGEFDV 123
           S   PF +  +  PF F+  RF+ + P+D     F+ELL+     PS+ EA+ +L +  +
Sbjct: 66  STFQPFSAHNLDDPFDFNHPRFRTYDPHDRFLLRFLELLREVPHYPSKAEAMTSLDDSGI 125

Query: 124 QADSNLVYSAIWVLRDDWKSSFLAFKWGEKWGSIDEEICNLMIWVLGNHKKFSTAWCLIR 183
           + +S ++YSA+W LR++W+ + LAF+W E+WG  DE+  NLMIWVLGNH+KF+TAWCLIR
Sbjct: 126 EVNSEMIYSAVWELREEWRLALLAFRWSEQWGCADEKSSNLMIWVLGNHRKFNTAWCLIR 185

Query: 184 EFHGSLLNSRQAMLVMIDRYAHANEANKAIKTFHMMEKFRLTPDQEAFHALLNSLCKYGN 243
           + H S +++R+AML+MIDRYA AN+  KAI TFH+MEKFRL+PDQ+AFH +LN+LCKYGN
Sbjct: 186 DMHQSKVDTRRAMLIMIDRYASANDPCKAIGTFHIMEKFRLSPDQQAFHTVLNALCKYGN 245

Query: 244 IEEAEEFMLVNKKLFPLETESFNIILNGWCNVSVDVFEAKRIWREMSKCCILPDSTSYTL 303
           +EEAEEFM +NKKLFPLETE FNIILNGWCN+S+D+FEAKR+WREMSKCCI PD+TSYT 
Sbjct: 246 VEEAEEFMFLNKKLFPLETEGFNIILNGWCNISLDIFEAKRVWREMSKCCITPDATSYTN 305

Query: 304 MISCFSRTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 363
           MISCF++ GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 306 MISCFAKVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 365

Query: 364 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADSEMSFELLK 423
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GA  E + E+L 
Sbjct: 366 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGAGFEGTLEILN 425

Query: 424 QIRQNGLGPTEATFIIMFNKSFELEQPDYALKAWEEMKRYEISPNSEHYAVLIQGLATYG 483
           ++R+ GLGPT  + +I+ ++ F+L QP+ ALK W EMK+YE+  +  H +VL+QGLAT G
Sbjct: 426 RMRKAGLGPTGDSLLIILSRFFKLGQPENALKIWVEMKQYEVELSHTHQSVLVQGLATCG 485

Query: 484 LLKQARELYDQMTSHGFILHPKIKMLVKEPELRSIEEATQQVTH-NKKGKFFHRKGSM 529
            L +ARE Y  M S GF   PK+K L+KEP   S+ +  QQV   N++G   H K S+
Sbjct: 486 WLTKAREFYADMRSKGFAEDPKLKKLLKEPARDSMHKGKQQVQRLNREGWLNHGKESI 541

The following BLAST results are available for this feature:

BLAST of Carg18732 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953169.1	1.2e-247	99.82	pentatricopeptide repeat-containing protein At1g80880, mitochondrial [Cucurbita ...	[more]
XP_023547792.1	1.9e-240	97.06	pentatricopeptide repeat-containing protein At1g80880, mitochondrial [Cucurbita ...	[more]
XP_022992478.1	2.1e-239	96.88	pentatricopeptide repeat-containing protein At1g80880, mitochondrial [Cucurbita ...	[more]
XP_008461183.1	5.1e-193	84.25	PREDICTED: pentatricopeptide repeat-containing protein At1g80880, mitochondrial ...	[more]
XP_011659500.1	4.6e-186	82.42	PREDICTED: pentatricopeptide repeat-containing protein At1g80880, mitochondrial ...	[more]

BLAST of Carg18732 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G80880.1	4.1e-80	59.34	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G15010.1	1.5e-37	40.00	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G65820.1	3.6e-15	26.64	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G49730.1	2.4e-11	27.89	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G77360.1	4.1e-11	21.31	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Carg18732 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SAH2\|PP137_ARATH	7.4e-79	59.34	Pentatricopeptide repeat-containing protein At1g80880, mitochondrial OS=Arabidop...	[more]
sp\|Q9LFQ4\|PP383_ARATH	2.7e-36	40.00	Pentatricopeptide repeat-containing protein At5g15010, mitochondrial OS=Arabidop...	[more]
sp\|Q9FH87\|PP447_ARATH	6.4e-14	26.64	Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis th...	[more]
sp\|P0C8A0\|PP275_ARATH	4.3e-10	27.89	Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9FVX2\|PP129_ARATH	7.3e-10	21.31	Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidop...	[more]

BLAST of Carg18732 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CE43\|A0A1S3CE43_CUCME	3.4e-193	84.25	pentatricopeptide repeat-containing protein At1g80880, mitochondrial OS=Cucumis ...	[more]
tr\|A0A0A0K678\|A0A0A0K678_CUCSA	3.0e-186	82.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G431960 PE=4 SV=1	[more]
tr\|A0A2I4GIU2\|A0A2I4GIU2_9ROSI	8.7e-125	63.26	pentatricopeptide repeat-containing protein At1g80880, mitochondrial OS=Juglans ...	[more]
tr\|A0A2P4LEF9\|A0A2P4LEF9_QUESU	6.5e-120	60.84	Pentatricopeptide repeat-containing protein, mitochondrial OS=Quercus suber OX=5...	[more]
tr\|A0A2P4LEG7\|A0A2P4LEG7_QUESU	1.3e-115	60.97	Pentatricopeptide repeat-containing protein, mitochondrial OS=Quercus suber OX=5...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18732-RA	Carg18732-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 288..320 e-value: 1.3E-7 score: 29.4 coord: 186..215 e-value: 0.0023 score: 16.0 coord: 358..390 e-value: 1.0E-5 score: 23.3 coord: 323..355 e-value: 4.2E-4 score: 18.3
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 288..315 e-value: 3.9E-6 score: 26.6 coord: 460..488 e-value: 0.019 score: 15.1 coord: 219..238 e-value: 0.093 score: 12.9 coord: 186..210 e-value: 0.24 score: 11.6
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 342..398 e-value: 7.9E-10 score: 38.6
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 421..455 score: 7.563
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 215..245 score: 7.245
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 355..389 score: 12.101
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 320..354 score: 9.964
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 146..176 score: 5.612
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 285..319 score: 11.707
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 456..490 score: 9.865
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 180..214 score: 7.695
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 249..284 score: 8.714
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 316..384 e-value: 2.5E-17 score: 65.0 coord: 241..315 e-value: 6.4E-9 score: 37.5
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 385..543 e-value: 1.5E-20 score: 75.8
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 140..240 e-value: 9.2E-13 score: 50.4
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	SSF48452	TPR-like	coord: 194..239 coord: 300..380
None	No IPR available	PANTHER	PTHR24015:SF602	SUBFAMILY NOT NAMED	coord: 35..501
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 35..501

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18732	Cla015319	Watermelon (97103) v1	carwmB0345
Carg18732	Csa7G431960	Cucumber (Chinese Long) v2	carcuB0387
Carg18732	MELO3C023471	Melon (DHL92) v3.5.1	carmeB0359
Carg18732	ClCG09G003370	Watermelon (Charleston Gray)	carwcgB0346
Carg18732	CSPI07G20080	Wild cucumber (PI 183967)	carcpiB0391
Carg18732	Cucsa.105940	Cucumber (Gy14) v1	carcgyB0414
Carg18732	CmaCh17G009000	Cucurbita maxima (Rimu)	carcmaB0497
Carg18732	CmoCh17G008710	Cucurbita moschata (Rifu)	carcmoB0480
Carg18732	Lsi02G026640	Bottle gourd (USVL1VR-Ls)	carlsiB321
Carg18732	Cp4.1LG12g07180	Cucurbita pepo (Zucchini)	carcpeB0493
Carg18732	CsGy7G018360	Cucumber (Gy14) v2	carcgybB0366
Carg18732	MELO3C023471.2	Melon (DHL92) v3.6.1	carmedB0364
Carg18732	CsaV3_7G031860	Cucumber (Chinese Long) v3	carcucB0390
Carg18732	Cla97C09G165600	Watermelon (97103) v2	carwmbB0371
Carg18732	Bhi09G000437	Wax gourd	carwgoB0439

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18732	Cucurbita pepo (Zucchini)	carcpeB0494
Carg18732	Cucurbita pepo (Zucchini)	carcpeB0495
Carg18732	Wild cucumber (PI 183967)	carcpiB0390
Carg18732	Cucumber (Chinese Long) v2	carcuB0386
Carg18732	Cucumber (Chinese Long) v3	carcucB0389
Carg18732	Bottle gourd (USVL1VR-Ls)	carlsiB322
Carg18732	Melon (DHL92) v3.5.1	carmeB0360
Carg18732	Watermelon (Charleston Gray)	carwcgB0347
Carg18732	Watermelon (97103) v1	carwmB0346
Carg18732	Watermelon (97103) v2	carwmbB0369
Carg18732	Wax gourd	carwgoB0437
Carg18732	Silver-seed gourd	carcarB379
Carg18732	Silver-seed gourd	carcarB383
Carg18732	Cucumber (Gy14) v2	carcgybB0365
Carg18732	Cucurbita maxima (Rimu)	carcmaB0496
Carg18732	Cucurbita maxima (Rimu)	carcmaB0498
Carg18732	Cucurbita maxima (Rimu)	carcmaB0499
Carg18732	Cucurbita moschata (Rifu)	carcmoB0479
Carg18732	Cucurbita moschata (Rifu)	carcmoB0481
Carg18732	Cucurbita moschata (Rifu)	carcmoB0482