Cp4.1LG12g06880 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g06880
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRNA-binding family protein
LocationCp4.1LG12 : 7267799 .. 7270815 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCGTGCAGCACGGGCTTAGATCAATCTCTTCTTCCCGACTGGATAAACCTCTGGCCTCGCCTCGGGGTTCTTCCATAGCGTCTTCTGTCACTCGCACCACAAGCTCTGCTCGGCGAAAATGGCTTCCATCTCATCCATATTAACGCCGGCGAATCTCATCCAAAGCTCCATAAAACCCACGGAAATCCCGCAAAATTTATCCACTCAATTTCTCCGACCGATCTCGTTTCATCCTCGTTATACCCTCCTCCGTGTATCTCCCGGTCTTCAAACTTCCGCCGGAAAACGCTGCACCAGACTCTTCGCCGTCGCAGAAGCGGCGGTTTCTGTCCAGGATCCTAGTTCGGTGGCGGCAAGGAAATTGTACATTGGGAATATACCTAGAAATGTGGGTAATGAGGAGCTCACTCGGATTGTTGAAGAACATGGCGCTGTGGAGAAGGCTGAGGTGCGTAATTTCTGCTTGGAACTGTTCTTTTCTTTTGGTATCCTGAATTTTTGTTTGATAATCTGCGTTGTGCTTGATTTTGGCGGATTGCTGGATTTTGAAGGCTTATATCTAGTTTGTCTGGAACGTTCGCATTGATTTAGTTTACTTGTTCTTAAATTCATTAGAACTGCTCAATGTTCCCTGATTTAGTGCTGGAATGTGATTAGTTTCACTTCAATATAGACAGGATAACACTAGATAATTTATGTTAATTACTTGTATACGGTTTTCAAACTGTTCATTCCAAGTAGAAGATCTTATGCCATTATCGTCAGAGCATGCCCGTGGAGCCATTCACATAGGTTTATCCATTGTTGTTGCGGATCGGGAACTGGGTATTGGGAATCTGTTGAGGATTGTTGGGAAAGGAGTCCCATATCGGCTAATTAAGGGGTTAATCATGAGTTTATGAGGTTTTTTGGGAAAATCAAAAGCAAAGTCACGAGAGCTTATGCTTAAAAGTGGACAATATCATACTATTGTAGAGGTCCGTGATTCCTAACATGGTATCAAAGTCATGCCCTTAACCAAATGTCGAACAAAGAAGTTGTGAGCCTCGAAGGTGTGATCAAAAGTGACTCAAGTGTTGAACAAAAGGTGTAGTTTGTTCAAGGGCTCTAGAAAAGGAGTCGAGCCTCGATTAAGGGGAGGCTGTTCGAGGCTCCATAGGTTTCAGGGAAGGCTCTATAGTGTACTTTGTTCGAGGGGAGGATTGTTGGGAAAGGAGTCTCACTTCGGCTAATAAAAGGGGTTAATCATGGGTTTATAAGTAAGGAATACATCTCCATTGGTACGAGTCCTTTTGGGAAACCAAAAACAAACCATGAGAGCTTATGCTCAACGTGGACAATATCATACTATTGTGGAGGTCCGTGATTCCAAGAATTCTAGCATCGCTTTGTTCTTAAATCTTTACTTGGTAACTGTTGGTGTTGGCTTCAAGACTCTTATTTGTTCCATTTCCAGGTCATGTATGACAAATACTCAGGAAGAAGCCGCAGATTTGCCTTTGTTACCATGAAAACAGTTGATGATGCTAATGCAGTAATTGAGAAACTGAATGATACAGTAAGTTCATAGTAATACCTACAAAGTGCAACAAAAACTGTTTCCCATAGATCATATGTGCTGACAATATTGATCTAACGACAGGAAGTCGGAGGACGAACGATTAAAGTCAACATAACCGAAAAGCCTTTGGTTAATACGGTCGACATGTCTCTTCTTCAGGCAGACGAATCCCAGTTCATTGACAGTCCCTACAAAGTATATGTAGGAAACATTTCAAGTACAGTTTCTACTGACACACTCAAGAACTTCTTCTCCGAAAAGGGTAAAGTTCTCAGCGCAAAGGTTTCACGGGTTCCCGGTACCTCGAAATCGAGTGGCTATGGTTTTGTTACCTTCTCTTCAGAGGAGGAAGTCGAAGCTGCCATTTCATCTTTTAACAACGCTGTAAGTAACTCGCTTCGATTCTCTATCGTGTCGAATTTCGTGGTATCGATACCAATTTATGCACACTCTATCTCACTTTCTGGTCCATATCACATAATATCCATTGGTTTGGTAGACATTATCTGTTTCCCGAAGTAAGTGCAGCTAATATAACATCTTTGATGACTAACATGTGAGAAACTGTTCTAAAACTTGTTGATTGATAGACATTTCGAACACGAACATTGTAATGGCTCAGACACACCGCTAGCAGATATTGTCCTCTTTGGGCTTTCCCTTTCGAGCTTCCTCAAGGCTTTAAAATGCATTTGCTAGGGAAAGGTTTCCACACCCTTATAAAGGGTGTTTCGTTCTCCTCCCCAACCAATGTGGGATTGTAGGATGTCACAATATCTAGACACCAAAATCTAGACACAAGGCGGTGTGCCAGTAAGGACATTGGCCCCTAAAGGGGGGTGAATTTGGCAGGGGTCCCACATCGATTGGAGAAATGAATGAGTGCCAGCGAGGACGCTGGGCCGTGAAAGGAGGTGGATTGTGACATCCTACAATCCCATATTGGTTGGAGAGAAGAACGAAAGACCCTTTATAAAGGTGTGGAAACCTTTCCTTAGTAGATGCGTTTTAAAGCCTTAAGGGGAAGCCCGAAAAGAAAAGTCCAAAGAGAACAATATCTGTTAGCGGTGTGTTTGGGCCGTTACATACATCTTCGGTTAGTTATCGATATTACTCCGCTGTTGTTGGATGAGCCACACTCTCAAAGATGATGGCATATTGATCCAAAAAGGTTGGAAGAAGGTTCCGTGTCTGATATGTTTTTCTTTGCTGCAGTTATTGGAAGGCCAACCAATCCGCGTAAACAAGGCATAATTTTGTAGAACAAAATGTAAGGAAGTTTCACTTTTGCTTCTTGTTTCGACAGCGAATGGTCGATCGTTCTTTAGACTCGGTTTTGTGTTGTTTTTAGTTTTTTGAAATGTATGCTTAGCTTTCACATTTCTTACATATTTGAGGAGTGACTTGTACTTGGTTCGAGGAAACGAGTATTAAATTTCATGCGATTACTTATAC

mRNA sequence

TGCGTGCAGCACGGGCTTAGATCAATCTCTTCTTCCCGACTGGATAAACCTCTGGCCTCGCCTCGGGGTTCTTCCATAGCGTCTTCTGTCACTCGCACCACAAGCTCTGCTCGGCGAAAATGGCTTCCATCTCATCCATATTAACGCCGGCGAATCTCATCCAAAGCTCCATAAAACCCACGGAAATCCCGCAAAATTTATCCACTCAATTTCTCCGACCGATCTCGTTTCATCCTCGTTATACCCTCCTCCGTGTATCTCCCGGTCTTCAAACTTCCGCCGGAAAACGCTGCACCAGACTCTTCGCCGTCGCAGAAGCGGCGGTTTCTGTCCAGGATCCTAGTTCGGTGGCGGCAAGGAAATTGTACATTGGGAATATACCTAGAAATGTGGGTAATGAGGAGCTCACTCGGATTGTTGAAGAACATGGCGCTGTGGAGAAGGCTGAGGTCATGTATGACAAATACTCAGGAAGAAGCCGCAGATTTGCCTTTGTTACCATGAAAACAGTTGATGATGCTAATGCAGTAATTGAGAAACTGAATGATACAGAAGTCGGAGGACGAACGATTAAAGTCAACATAACCGAAAAGCCTTTGGTTAATACGGTCGACATGTCTCTTCTTCAGGCAGACGAATCCCAGTTCATTGACAGTCCCTACAAAGTATATGTAGGAAACATTTCAAGTACAGTTTCTACTGACACACTCAAGAACTTCTTCTCCGAAAAGGGTAAAGTTCTCAGCGCAAAGGTTTCACGGGTTCCCGGTACCTCGAAATCGAGTGGCTATGGTTTTGTTACCTTCTCTTCAGAGGAGGAAGTCGAAGCTGCCATTTCATCTTTTAACAACGCTTTATTGGAAGGCCAACCAATCCGCGTAAACAAGGCATAATTTTGTAGAACAAAATGTAAGGAAGTTTCACTTTTGCTTCTTGTTTCGACAGCGAATGGTCGATCGTTCTTTAGACTCGGTTTTGTGTTGTTTTTAGTTTTTTGAAATGTATGCTTAGCTTTCACATTTCTTACATATTTGAGGAGTGACTTGTACTTGGTTCGAGGAAACGAGTATTAAATTTCATGCGATTACTTATAC

Coding sequence (CDS)

ATGGCTTCCATCTCATCCATATTAACGCCGGCGAATCTCATCCAAAGCTCCATAAAACCCACGGAAATCCCGCAAAATTTATCCACTCAATTTCTCCGACCGATCTCGTTTCATCCTCGTTATACCCTCCTCCGTGTATCTCCCGGTCTTCAAACTTCCGCCGGAAAACGCTGCACCAGACTCTTCGCCGTCGCAGAAGCGGCGGTTTCTGTCCAGGATCCTAGTTCGGTGGCGGCAAGGAAATTGTACATTGGGAATATACCTAGAAATGTGGGTAATGAGGAGCTCACTCGGATTGTTGAAGAACATGGCGCTGTGGAGAAGGCTGAGGTCATGTATGACAAATACTCAGGAAGAAGCCGCAGATTTGCCTTTGTTACCATGAAAACAGTTGATGATGCTAATGCAGTAATTGAGAAACTGAATGATACAGAAGTCGGAGGACGAACGATTAAAGTCAACATAACCGAAAAGCCTTTGGTTAATACGGTCGACATGTCTCTTCTTCAGGCAGACGAATCCCAGTTCATTGACAGTCCCTACAAAGTATATGTAGGAAACATTTCAAGTACAGTTTCTACTGACACACTCAAGAACTTCTTCTCCGAAAAGGGTAAAGTTCTCAGCGCAAAGGTTTCACGGGTTCCCGGTACCTCGAAATCGAGTGGCTATGGTTTTGTTACCTTCTCTTCAGAGGAGGAAGTCGAAGCTGCCATTTCATCTTTTAACAACGCTTTATTGGAAGGCCAACCAATCCGCGTAAACAAGGCATAA

Protein sequence

MASISSILTPANLIQSSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRCTRLFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSPYKVYVGNISSTVSTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA
Homology
[Close]
BLAST of Cp4.1LG12g06880 vs. Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 9.1e-72
Identity = 155/262 (59.16%), Postives = 193/262 (73.66%), Query Frame = 1 

Query: 1   MASISSILTPANLIQ--SSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRC 60
           MA+ISSIL    L+Q  SS   +  P+  S   ++  SF   + L ++   + T+     
Sbjct: 1   MATISSILPCHGLLQHCSSSSSSSKPKFSSQNLVQLQSFSNGFGL-KLKTRVSTNPPLLK 60

Query: 61  TRLFAVAEAAVSVQDPSSV---AARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDK 120
            R     E + S    SS     AR+LY+GNIPRN+ N+EL  IVEEHGA+E AEVMYDK
Sbjct: 61  VRAVVTEETSSSSTASSSSDGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDK 120

Query: 121 YSGRSRRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQ 180
           YSGRSRRF FVTMKTV+DANAVIEKLNDTE+GGR IKVNITEKPL   +D++  QA++SQ
Sbjct: 121 YSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPL-EGMDIATTQAEDSQ 180

Query: 181 FIDSPYKVYVGNISSTVSTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEV 240
           F++SPYKVY+GN++ TV+ + LK+FFSEKGKVL AKV R PGTSKS+G+GFV+FSSEEEV
Sbjct: 181 FVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEV 240

Query: 241 EAAISSFNNALLEGQPIRVNKA 258
           EAAI + NN++LEGQ IRVNKA
Sbjct: 241 EAAIQALNNSVLEGQKIRVNKA 260

[Close]
BLAST of Cp4.1LG12g06880 vs. Swiss-Prot
Match: CP33_ARATH (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana GN=CP33 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.5e-31
Identity = 67/179 (37.43%), Postives = 115/179 (64.25%), Query Frame = 1 

Query: 81  KLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAVIEK 140
           +LY+GN+P  + + EL++I  E G V   +++YDK + RSR F FVTM ++++A   ++ 
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176

Query: 141 LNDTEVGGRTIKVNITEKPL--VNTVDMSLLQADESQFIDSPYKVYVGNISSTVSTDTLK 200
            N +++GGRT+KVN  E P    N V  + ++ +   ++DSP+KVY GN+   +++  LK
Sbjct: 177 FNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLK 236

Query: 201 NFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA 258
           + F ++  VL AKV     T +S G+GF++F S E V++A+++ N   +EG+ +R+N A
Sbjct: 237 DAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLA 295

[Close]
BLAST of Cp4.1LG12g06880 vs. Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 4.6e-31
Identity = 71/187 (37.97%), Postives = 119/187 (63.64%), Query Frame = 1 

Query: 73  DPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVD 132
           +  SV   +LY+GN+P ++ + +L+ I  E G V   E++YD+ + RSR FAFVTM +V+
Sbjct: 107 ESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVE 166

Query: 133 DANAVIEKLNDTEVGGRTIKVNITEKPL--VNTVDMSLLQADESQFIDSPYKVYVGNISS 192
           +A   I   + ++VGGRT+KVN  E P      V  + +++    F+DSP+K+YV N+S 
Sbjct: 167 EAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSW 226

Query: 193 TVSTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQ 252
            +++  L++ F+++   +SAKV     + +S G+GF+TFSS E + +A+ + N   LEG+
Sbjct: 227 ALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGR 286

Query: 253 PIRVNKA 258
           P+R+N A
Sbjct: 287 PLRLNVA 293

[Close]
BLAST of Cp4.1LG12g06880 vs. Swiss-Prot
Match: CP29B_ARATH (RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana GN=CP29B PE=1 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 6.8e-27
Identity = 76/200 (38.00%), Postives = 113/200 (56.50%), Query Frame = 1 

Query: 72  QDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTV 131
           ++ S  A  KL++GN+P NV + +L ++ E  G VE  EV+YDK +GRSR F FVTM +V
Sbjct: 83  KEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSV 142

Query: 132 DDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQF--------------I 191
            +  A  ++ N  E+ GR ++VN    P       S  +   S F               
Sbjct: 143 SEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFS--RGPRSSFGSSGSGYGGGGGSGA 202

Query: 192 DSPYKVYVGNISSTVSTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEA 251
            S  +VYVGN+S  V    L++ FSE+GKV+ A+V     + +S G+GFVT+ S +EV+ 
Sbjct: 203 GSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQN 262

Query: 252 AISSFNNALLEGQPIRVNKA 258
           AI S + A L+G+ IRV++A
Sbjct: 263 AIKSLDGADLDGRQIRVSEA 280

[Close]
BLAST of Cp4.1LG12g06880 vs. Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.2e-26
Identity = 70/177 (39.55%), Postives = 101/177 (57.06%), Query Frame = 1 

Query: 81  KLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAVIEK 140
           K+++GN+P +  +  L  + E  G VE  EV+YDK +GRSR F FVTM + ++  A  ++
Sbjct: 88  KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147

Query: 141 LNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSPYKVYVGNISSTVSTDTLKNF 200
            N  E+ GR ++VN    P           +      DS  +VYVGN++  V  D L+  
Sbjct: 148 FNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETL 207

Query: 201 FSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA 258
           FSE+GKV+ AKV     + +S G+GFVT+SS EEV  AI S +   L G+ IRV+ A
Sbjct: 208 FSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 264

[Close]
BLAST of Cp4.1LG12g06880 vs. TrEMBL
Match: A0A0A0K8E7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G428960 PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 6.3e-104
Identity = 207/241 (85.89%), Postives = 219/241 (90.87%), Query Frame = 1 

Query: 17  SIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRCTRLFAVAEAAVSVQDPSS 76
           S KPT+IPQ LS+QFLRPISFHP + LLR+SP     A K  TRLFAVAE  V+ Q  SS
Sbjct: 31  SKKPTDIPQTLSSQFLRPISFHPPHILLRISP----VAAKPPTRLFAVAE--VATQGASS 90

Query: 77  VAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA 136
           VA RKLYIGNIPRNV NEELTRIV+EHGAVEKAEVMYDKYSGRSRRFAFVTMKTV+DANA
Sbjct: 91  VAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANA 150

Query: 137 VIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSPYKVYVGNISSTVSTDT 196
            IEKLN+TEVGGR IKVNITEKP+VNTVDMS LQA+ESQFIDSPYKVYVGNISSTVST+T
Sbjct: 151 AIEKLNETEVGGRKIKVNITEKPVVNTVDMSFLQAEESQFIDSPYKVYVGNISSTVSTET 210

Query: 197 LKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNK 256
           LKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEV+AAISSFNNALLEGQPIRVNK
Sbjct: 211 LKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAISSFNNALLEGQPIRVNK 265

Query: 257 A 258
           A
Sbjct: 271 A 265

[Close]
BLAST of Cp4.1LG12g06880 vs. TrEMBL
Match: M5X3H8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010401mg PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 3.0e-82
Identity = 171/257 (66.54%), Postives = 201/257 (78.21%), Query Frame = 1 

Query: 1   MASISSILTPANLIQSSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRCTR 60
           MA+ISS+L+P NL+    KP +    LS Q L+P  F       +++        +   R
Sbjct: 1   MATISSLLSPPNLLHHHTKPIKAAPKLSLQILKPTQFQG---FQKLTSSYMILTPRHSQR 60

Query: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120
           + AVAE   +  DPSS AAR++YIGNIPR V N ELT+IVEEHGAVEKAEVM+DKYSGRS
Sbjct: 61  VSAVAEEVAA--DPSSKAARRVYIGNIPRTVDNAELTKIVEEHGAVEKAEVMFDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSP 180
           RRFAFVT KTV+DAN+++EKLN TE+GGR IKVNITEKPL+   D+SLLQA+ESQFIDSP
Sbjct: 121 RRFAFVTAKTVEDANSIVEKLNGTEIGGREIKVNITEKPLLQA-DVSLLQAEESQFIDSP 180

Query: 181 YKVYVGNISSTVSTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240
           +KVYVGN+   V+TDTLK  FSEKGKVLSAKVSRVPGTSKSSG+GFV+FSSEE+VEAAIS
Sbjct: 181 HKVYVGNLGKEVTTDTLKTLFSEKGKVLSAKVSRVPGTSKSSGFGFVSFSSEEDVEAAIS 240

Query: 241 SFNNALLEGQPIRVNKA 258
           SFNN L EGQ IRVNKA
Sbjct: 241 SFNNTLFEGQRIRVNKA 251

[Close]
BLAST of Cp4.1LG12g06880 vs. TrEMBL
Match: B9HNK5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s07030g PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 5.2e-82
Identity = 178/262 (67.94%), Postives = 207/262 (79.01%), Query Frame = 1 

Query: 1   MASISSILTPANLIQSSIKPTEIPQNLSTQFLRP---ISFHPRYTLLRVSPGLQTSAGKR 60
           MA+ISS+ TP     + +  +      S Q L+P    +  P++T L     L T A +R
Sbjct: 1   MATISSLTTPLPT-STKLALSRNQSKPSFQILKPANPFNHFPKFTHLHKI--LNTKAPQR 60

Query: 61  CTRLFAVAE--AAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDK 120
              LFAVAE  A  +  DPSS AAR+LY+GNIPR + NEELT+IVEEHGAVEKAEVMYDK
Sbjct: 61  ---LFAVAEETAPAAAVDPSSEAARRLYVGNIPRTLTNEELTKIVEEHGAVEKAEVMYDK 120

Query: 121 YSGRSRRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQ 180
           YSGRSRRFAFVTMKT +DANA IEKLN TE+GGR IKVNITEKPL  ++D+  LQ+DESQ
Sbjct: 121 YSGRSRRFAFVTMKTAEDANAAIEKLNGTEIGGREIKVNITEKPL-QSLDLPSLQSDESQ 180

Query: 181 FIDSPYKVYVGNISSTVSTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEV 240
           F+DSPYKVYVGN++ TV+TDTLKNFFS+KG VLSAKVSRVPGTSKSSG+GFVTFSSEE+V
Sbjct: 181 FVDSPYKVYVGNLAKTVATDTLKNFFSKKGNVLSAKVSRVPGTSKSSGFGFVTFSSEEDV 240

Query: 241 EAAISSFNNALLEGQPIRVNKA 258
           E AISSFNN+LLEGQPIRVNKA
Sbjct: 241 EVAISSFNNSLLEGQPIRVNKA 255

[Close]
BLAST of Cp4.1LG12g06880 vs. TrEMBL
Match: A0A061DVN6_THECC (RNA-binding family protein OS=Theobroma cacao GN=TCM_005932 PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 8.8e-82
Identity = 174/258 (67.44%), Postives = 204/258 (79.07%), Query Frame = 1 

Query: 1   MASISSILTPANLIQSSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRCTR 60
           MASISS+++P  L   +     +   L  Q L+P + +P      +   L  ++  +  R
Sbjct: 1   MASISSLISPPGLPNPAKLSLTLQSKLFLQILQPTT-NP---FANLPQNLLLNSRPKKVR 60

Query: 61  LFAVAEAAVSV-QDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGR 120
           LFAVAE   SV   PSS AAR+LYIGNIPR V N+ELT+IVEEHGAVEKAEVMYDKYSGR
Sbjct: 61  LFAVAEEQTSVVSSPSSEAARRLYIGNIPRTVNNDELTKIVEEHGAVEKAEVMYDKYSGR 120

Query: 121 SRRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDS 180
           SRRFAFVTMKTV+DANA IEKLN TE+G R IKVNITEKPL   VD+SLLQ ++SQF+DS
Sbjct: 121 SRRFAFVTMKTVEDANAAIEKLNGTEIGQREIKVNITEKPLPQ-VDLSLLQDEDSQFVDS 180

Query: 181 PYKVYVGNISSTVSTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI 240
           P+KVYVGN++ T++TDTLK FFSEKGKVLSAKVSRVPGTSKS G+GFVTFSSEEEVEAAI
Sbjct: 181 PHKVYVGNLAKTITTDTLKKFFSEKGKVLSAKVSRVPGTSKSGGFGFVTFSSEEEVEAAI 240

Query: 241 SSFNNALLEGQPIRVNKA 258
           S+FNN+LLEGQ +RVNKA
Sbjct: 241 SAFNNSLLEGQQVRVNKA 253

[Close]
BLAST of Cp4.1LG12g06880 vs. TrEMBL
Match: A9PJ20_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 1.2e-81
Identity = 177/262 (67.56%), Postives = 207/262 (79.01%), Query Frame = 1 

Query: 1   MASISSILTPANLIQSSIKPTEIPQNLSTQFLRP---ISFHPRYTLLRVSPGLQTSAGKR 60
           MA+ISS+ TP     + +  +      S Q L+P    +  P++T L     L T A +R
Sbjct: 1   MATISSLTTPLPT-STKLALSRNQSKPSFQILKPANPFNHFPKFTHLHKI--LNTKAPQR 60

Query: 61  CTRLFAVAE--AAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDK 120
              LFAVAE  A  +  DPSS AAR+LY+GNIPR + NEELT+IVEEHGAVEKAEVMYDK
Sbjct: 61  ---LFAVAEETAPAAAVDPSSEAARRLYVGNIPRTLTNEELTKIVEEHGAVEKAEVMYDK 120

Query: 121 YSGRSRRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQ 180
           YSGRSRRFAFVTMKT +DANA IEKLN TE+GGR IKVNITEKPL  ++D+  LQ+DE+Q
Sbjct: 121 YSGRSRRFAFVTMKTAEDANAAIEKLNGTEIGGREIKVNITEKPL-QSLDLPSLQSDETQ 180

Query: 181 FIDSPYKVYVGNISSTVSTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEV 240
           F+DSPYKVYVGN++ TV+TDTLKNFFS+KG VLSAKVSRVPGTSKSSG+GFVTFSSEE+V
Sbjct: 181 FVDSPYKVYVGNLAKTVATDTLKNFFSKKGNVLSAKVSRVPGTSKSSGFGFVTFSSEEDV 240

Query: 241 EAAISSFNNALLEGQPIRVNKA 258
           E AISSFNN+LLEGQPIRVNKA
Sbjct: 241 EVAISSFNNSLLEGQPIRVNKA 255

[Close]
BLAST of Cp4.1LG12g06880 vs. TAIR10
Match: AT3G52150.1 (AT3G52150.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 273.1 bits (697), Expect = 1.8e-73
Identity = 135/185 (72.97%), Postives = 164/185 (88.65%), Query Frame = 1 

Query: 73  DPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVD 132
           DPSS AAR++YIGNIPR V NE+LT++VEEHGAVEK +VMYDKYSGRSRRF F TMK+V+
Sbjct: 69  DPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVE 128

Query: 133 DANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSPYKVYVGNISSTV 192
           DANAV+EKLN   V GR IKVNITEKP+ ++ D+S+LQ+++S F+DSPYKVYVGN++ TV
Sbjct: 129 DANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTV 188

Query: 193 STDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPI 252
           + + L+N FSEKGKV+SAKVSRVPGTSKS+G+GFVTFSSEE+VEAAI + NN+LLEGQ I
Sbjct: 189 TKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKI 248

Query: 253 RVNKA 258
           RVNKA
Sbjct: 249 RVNKA 253

[Close]
BLAST of Cp4.1LG12g06880 vs. TAIR10
Match: AT1G60000.1 (AT1G60000.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 139.8 bits (351), Expect = 2.3e-33
Identity = 87/243 (35.80%), Postives = 134/243 (55.14%), Query Frame = 1 

Query: 32  LRPISFHPRYTLLRVS---PGLQTSAGKRCTRLFAVAEAAVSVQ--------------DP 91
           L   ++    TLLR +   P     + + C+R F V    ++V+              DP
Sbjct: 20  LHGCNYSSNQTLLRFNFSTPKPLLISSRSCSRRFRVLSETITVKLEEEEKDDGASAVLDP 79

Query: 92  SSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDA 151
            +    KLY GN+P NV +  L +I+++    E  EV+Y++ +G+SR FAFVTM  V+D 
Sbjct: 80  PAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDC 139

Query: 152 NAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSPYKVYVGNISSTVST 211
           N +I+ L+ TE  GR +KVN  +KP  N          E  + ++ +K++VGN+S TV++
Sbjct: 140 NIIIDNLDGTEYLGRALKVNFADKPKPN---------KEPLYPETEHKLFVGNLSWTVTS 199

Query: 212 DTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIRV 258
           ++L   F E G V+ A+V     T +S GYGFV +SS+ E+E A+ S +   LEG+ IRV
Sbjct: 200 ESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRV 253

[Close]
BLAST of Cp4.1LG12g06880 vs. TAIR10
Match: AT3G52380.1 (AT3G52380.1 chloroplast RNA-binding protein 33)

HSP 1 Score: 136.7 bits (343), Expect = 2.0e-32
Identity = 67/179 (37.43%), Postives = 115/179 (64.25%), Query Frame = 1 

Query: 81  KLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAVIEK 140
           +LY+GN+P  + + EL++I  E G V   +++YDK + RSR F FVTM ++++A   ++ 
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176

Query: 141 LNDTEVGGRTIKVNITEKPL--VNTVDMSLLQADESQFIDSPYKVYVGNISSTVSTDTLK 200
            N +++GGRT+KVN  E P    N V  + ++ +   ++DSP+KVY GN+   +++  LK
Sbjct: 177 FNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLK 236

Query: 201 NFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA 258
           + F ++  VL AKV     T +S G+GF++F S E V++A+++ N   +EG+ +R+N A
Sbjct: 237 DAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLA 295

[Close]
BLAST of Cp4.1LG12g06880 vs. TAIR10
Match: AT2G37220.1 (AT2G37220.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 122.5 bits (306), Expect = 3.9e-28
Identity = 76/200 (38.00%), Postives = 113/200 (56.50%), Query Frame = 1 

Query: 72  QDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTV 131
           ++ S  A  KL++GN+P NV + +L ++ E  G VE  EV+YDK +GRSR F FVTM +V
Sbjct: 83  KEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSV 142

Query: 132 DDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQF--------------I 191
            +  A  ++ N  E+ GR ++VN    P       S  +   S F               
Sbjct: 143 SEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFS--RGPRSSFGSSGSGYGGGGGSGA 202

Query: 192 DSPYKVYVGNISSTVSTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEA 251
            S  +VYVGN+S  V    L++ FSE+GKV+ A+V     + +S G+GFVT+ S +EV+ 
Sbjct: 203 GSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQN 262

Query: 252 AISSFNNALLEGQPIRVNKA 258
           AI S + A L+G+ IRV++A
Sbjct: 263 AIKSLDGADLDGRQIRVSEA 280

[Close]
BLAST of Cp4.1LG12g06880 vs. TAIR10
Match: AT5G50250.1 (AT5G50250.1 chloroplast RNA-binding protein 31B)

HSP 1 Score: 121.7 bits (304), Expect = 6.6e-28
Identity = 71/193 (36.79%), Postives = 110/193 (56.99%), Query Frame = 1 

Query: 65  AEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFA 124
           +E  V   +P   A  KL++GN+P +V ++ L  + E+ G VE +EV+Y++ + +SR F 
Sbjct: 100 SEDGVGFPEPPEEA--KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFG 159

Query: 125 FVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSPYKVY 184
           FVTM TV++A   +EK N  EV GR + VN                  + +  D+ +++Y
Sbjct: 160 FVTMSTVEEAEKAVEKFNSFEVNGRRLTVN-------RAAPRGSRPERQPRVYDAAFRIY 219

Query: 185 VGNISSTVSTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNN 244
           VGN+   V +  L+  FSE GKV+ A+V     T +S G+GFV  S+E EV  AI++ + 
Sbjct: 220 VGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDG 279

Query: 245 ALLEGQPIRVNKA 258
             LEG+ I+VN A
Sbjct: 280 QNLEGRAIKVNVA 283

[Close]
BLAST of Cp4.1LG12g06880 vs. NCBI nr
Match: gi|449436259|ref|XP_004135910.1| (PREDICTED: 30S ribosomal protein 2, chloroplastic [Cucumis sativus])

HSP 1 Score: 407.5 bits (1046), Expect = 1.7e-110
Identity = 221/257 (85.99%), Postives = 233/257 (90.66%), Query Frame = 1 

Query: 1   MASISSILTPANLIQSSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRCTR 60
           MASISSILTP NLI SS KPT+IPQ LS+QFLRPISFHP + LLR+SP     A K  TR
Sbjct: 1   MASISSILTPTNLIHSSKKPTDIPQTLSSQFLRPISFHPPHILLRISP----VAAKPPTR 60

Query: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAE  V+ Q  SSVA RKLYIGNIPRNV NEELTRIV+EHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAE--VATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSP 180
           RRFAFVTMKTV+DANA IEKLN+TEVGGR IKVNITEKP+VNTVDMS LQA+ESQFIDSP
Sbjct: 121 RRFAFVTMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDMSFLQAEESQFIDSP 180

Query: 181 YKVYVGNISSTVSTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240
           YKVYVGNISSTVST+TLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEV+AAIS
Sbjct: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAIS 240

Query: 241 SFNNALLEGQPIRVNKA 258
           SFNNALLEGQPIRVNKA
Sbjct: 241 SFNNALLEGQPIRVNKA 251

[Close]
BLAST of Cp4.1LG12g06880 vs. NCBI nr
Match: gi|659122659|ref|XP_008461258.1| (PREDICTED: 30S ribosomal protein 2, chloroplastic [Cucumis melo])

HSP 1 Score: 404.4 bits (1038), Expect = 1.4e-109
Identity = 220/257 (85.60%), Postives = 233/257 (90.66%), Query Frame = 1 

Query: 1   MASISSILTPANLIQSSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRCTR 60
           MASISSILTP NLI +S KPTEI Q LS+QFLRPISFHP + LLR+SP     A +  TR
Sbjct: 1   MASISSILTPTNLIHTSKKPTEISQALSSQFLRPISFHPPHILLRISP----VAARPPTR 60

Query: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAA   Q  SSVA RKLYIGNIPRNV NEELTRIV+EHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAT--QGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSP 180
           RRFAFVTMKTV+DANA IEKLN+TEVGGR IKVNITEKP+VNTVD+S+LQA+ESQFIDSP
Sbjct: 121 RRFAFVTMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDLSILQAEESQFIDSP 180

Query: 181 YKVYVGNISSTVSTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240
           YKVYVGNISSTVST+TLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS
Sbjct: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240

Query: 241 SFNNALLEGQPIRVNKA 258
           SFNNALLEGQPIRVNKA
Sbjct: 241 SFNNALLEGQPIRVNKA 251

[Close]
BLAST of Cp4.1LG12g06880 vs. NCBI nr
Match: gi|700189926|gb|KGN45159.1| (hypothetical protein Csa_7G428960 [Cucumis sativus])

HSP 1 Score: 385.2 bits (988), Expect = 9.0e-104
Identity = 207/241 (85.89%), Postives = 219/241 (90.87%), Query Frame = 1 

Query: 17  SIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRCTRLFAVAEAAVSVQDPSS 76
           S KPT+IPQ LS+QFLRPISFHP + LLR+SP     A K  TRLFAVAE  V+ Q  SS
Sbjct: 31  SKKPTDIPQTLSSQFLRPISFHPPHILLRISP----VAAKPPTRLFAVAE--VATQGASS 90

Query: 77  VAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA 136
           VA RKLYIGNIPRNV NEELTRIV+EHGAVEKAEVMYDKYSGRSRRFAFVTMKTV+DANA
Sbjct: 91  VAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANA 150

Query: 137 VIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSPYKVYVGNISSTVSTDT 196
            IEKLN+TEVGGR IKVNITEKP+VNTVDMS LQA+ESQFIDSPYKVYVGNISSTVST+T
Sbjct: 151 AIEKLNETEVGGRKIKVNITEKPVVNTVDMSFLQAEESQFIDSPYKVYVGNISSTVSTET 210

Query: 197 LKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNK 256
           LKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEV+AAISSFNNALLEGQPIRVNK
Sbjct: 211 LKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAISSFNNALLEGQPIRVNK 265

Query: 257 A 258
           A
Sbjct: 271 A 265

[Close]
BLAST of Cp4.1LG12g06880 vs. NCBI nr
Match: gi|1009106197|ref|XP_015873244.1| (PREDICTED: 30S ribosomal protein 2, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 321.2 bits (822), Expect = 1.6e-84
Identity = 179/260 (68.85%), Postives = 208/260 (80.00%), Query Frame = 1 

Query: 1   MASISSILTPANLIQSSIKPTEIPQN---LSTQFLRPISFHPRYTLLRVSPGLQTSAGKR 60
           MA ISS+L+P  LI   IK  + P +   +S  FL P  F     L +++      + + 
Sbjct: 1   MAVISSLLSPHTLIFHPIKSNQTPPSPPKISFHFLNPTPFQ---VLPKLTSNYLVLSPRE 60

Query: 61  CTRLFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYS 120
             RLFAVAE   +  DPSS AA++LY+GNIPRN+ NEELT+I  EHGAVEKAEVMYDKYS
Sbjct: 61  SHRLFAVAEDVSA--DPSSEAAKRLYVGNIPRNINNEELTKIFGEHGAVEKAEVMYDKYS 120

Query: 121 GRSRRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFI 180
           GRSRRFAFVTMKTV+DANA IEKLN TE+GGR IKVNITEKPL   VD+SLLQA+ESQFI
Sbjct: 121 GRSRRFAFVTMKTVEDANAAIEKLNGTEIGGREIKVNITEKPLTR-VDLSLLQAEESQFI 180

Query: 181 DSPYKVYVGNISSTVSTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEA 240
           DSP+KVYVGN++ TV+TDTLKNFFSEKG VLSAKVSR+PGTSKSSG+GFV+FSSEE+VEA
Sbjct: 181 DSPHKVYVGNLAKTVTTDTLKNFFSEKGNVLSAKVSRLPGTSKSSGFGFVSFSSEEDVEA 240

Query: 241 AISSFNNALLEGQPIRVNKA 258
           AISSFNN+LLEGQ IRVNKA
Sbjct: 241 AISSFNNSLLEGQKIRVNKA 254

[Close]
BLAST of Cp4.1LG12g06880 vs. NCBI nr
Match: gi|645250702|ref|XP_008231332.1| (PREDICTED: 30S ribosomal protein 2, chloroplastic [Prunus mume])

HSP 1 Score: 316.6 bits (810), Expect = 3.9e-83
Identity = 173/257 (67.32%), Postives = 202/257 (78.60%), Query Frame = 1 

Query: 1   MASISSILTPANLIQSSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRCTR 60
           MA+ISS+L+P NL+    KP +    LS Q L+P  F   + L   +        +   R
Sbjct: 1   MATISSLLSPPNLLHHPTKPIKAAPKLSLQILKPTQFQGFHKL---TSSYMILTPRHSQR 60

Query: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120
           +FAVAE   +  DPSS AAR++YIGNIPR V N ELT+IVEEHGAVEKAEVM+DKYSGRS
Sbjct: 61  VFAVAEEVAA--DPSSKAARRVYIGNIPRTVDNAELTKIVEEHGAVEKAEVMFDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSP 180
           RRFAFVT KTV+DAN+++EKLN TE+GGR IKVNITEKPL+   D+SLLQA+ESQFIDSP
Sbjct: 121 RRFAFVTAKTVEDANSIVEKLNGTEIGGREIKVNITEKPLLQA-DVSLLQAEESQFIDSP 180

Query: 181 YKVYVGNISSTVSTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240
           +KVYVGN+   V+TDTLK  FSEKGKVLSAKVSRVPGTSKSSG+GFV+FSSEE+VEAAIS
Sbjct: 181 HKVYVGNLGKEVTTDTLKTLFSEKGKVLSAKVSRVPGTSKSSGFGFVSFSSEEDVEAAIS 240

Query: 241 SFNNALLEGQPIRVNKA 258
           SFNN L EGQ IRVNKA
Sbjct: 241 SFNNTLFEGQRIRVNKA 251

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g06880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RRP2_SPIOL9.1e-7259.1630S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1[more]
CP33_ARATH3.5e-3137.43RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana GN=CP33 PE=2 SV=... [more]
ROC5_NICSY4.6e-3137.9733 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1[more]
CP29B_ARATH6.8e-2738.00RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana GN=CP29B PE=1 S... [more]
ROC1_NICSY1.2e-2639.5529 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1[more]
BLAST of Cp4.1LG12g06880 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K8E7_CUCSA6.3e-10485.89Uncharacterized protein OS=Cucumis sativus GN=Csa_7G428960 PE=4 SV=1[more]
M5X3H8_PRUPE3.0e-8266.54Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010401mg PE=4 SV=1[more]
B9HNK5_POPTR5.2e-8267.94Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s07030g PE=4 SV=1[more]
A0A061DVN6_THECC8.8e-8267.44RNA-binding family protein OS=Theobroma cacao GN=TCM_005932 PE=4 SV=1[more]
A9PJ20_9ROSI1.2e-8167.56Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2... [more]
BLAST of Cp4.1LG12g06880 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G52150.11.8e-7372.97 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G60000.12.3e-3335.80 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT3G52380.12.0e-3237.43 chloroplast RNA-binding protein 33[more]
AT2G37220.13.9e-2838.00 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G50250.16.6e-2836.79 chloroplast RNA-binding protein 31B[more]
BLAST of Cp4.1LG12g06880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449436259|ref|XP_004135910.1|1.7e-11085.99PREDICTED: 30S ribosomal protein 2, chloroplastic [Cucumis sativus][more]
gi|659122659|ref|XP_008461258.1|1.4e-10985.60PREDICTED: 30S ribosomal protein 2, chloroplastic [Cucumis melo][more]
gi|700189926|gb|KGN45159.1|9.0e-10485.89hypothetical protein Csa_7G428960 [Cucumis sativus][more]
gi|1009106197|ref|XP_015873244.1|1.6e-8468.85PREDICTED: 30S ribosomal protein 2, chloroplastic [Ziziphus jujuba][more]
gi|645250702|ref|XP_008231332.1|3.9e-8367.32PREDICTED: 30S ribosomal protein 2, chloroplastic [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR003954RRM_dom_euk
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0045036 protein targeting to chloroplast
biological_process GO:0008150 biological_process
biological_process GO:0044710 single-organism metabolic process
biological_process GO:0044763 single-organism cellular process
biological_process GO:0044237 cellular metabolic process
cellular_component GO:0009579 thylakoid
cellular_component GO:0044434 chloroplast part
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0005840 ribosome
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005575 cellular_component
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g06880.1Cp4.1LG12g06880.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 183..253
score: 8.7E-18coord: 82..152
score: 4.5
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 81..154
score: 2.5E-24coord: 182..255
score: 3.0
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 181..257
score: 18.24coord: 80..158
score: 17
IPR003954RNA recognition motif domain, eukaryoteSMARTSM00361rrm2_1coord: 182..255
score: 0.37coord: 81..154
score:
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 177..257
score: 1.5E-23coord: 73..157
score: 2.2
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 174..257
score: 3.63E-24coord: 71..158
score: 1.61
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 180..257
score: 1.7E-44coord: 80..160
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g06880Cucsa.050070Cucumber (Gy14) v1cgycpeB0046
Cp4.1LG12g06880CmaCh17G009360Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g06880CmaCh08G005490Cucurbita maxima (Rimu)cmacpeB902
Cp4.1LG12g06880CmoCh08G005400Cucurbita moschata (Rifu)cmocpeB839
Cp4.1LG12g06880CmoCh17G009110Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g06880Cla015269Watermelon (97103) v1cpewmB131
Cp4.1LG12g06880Csa7G428960Cucumber (Chinese Long) v2cpecuB161
Cp4.1LG12g06880MELO3C023523Melon (DHL92) v3.5.1cpemeB123
Cp4.1LG12g06880ClCG09G003870Watermelon (Charleston Gray)cpewcgB126
Cp4.1LG12g06880CSPI07G19530Wild cucumber (PI 183967)cpecpiB163
Cp4.1LG12g06880Lsi02G026020Bottle gourd (USVL1VR-Ls)cpelsiB113
Cp4.1LG12g06880MELO3C023523.2Melon (DHL92) v3.6.1cpemedB150
Cp4.1LG12g06880CsaV3_7G031350Cucumber (Chinese Long) v3cpecucB0188
Cp4.1LG12g06880Bhi09G000501Wax gourdcpewgoB0201
Cp4.1LG12g06880CsGy7G017850Cucumber (Gy14) v2cgybcpeB906
Cp4.1LG12g06880Carg13463Silver-seed gourdcarcpeB0631
Cp4.1LG12g06880Carg18695Silver-seed gourdcarcpeB0493
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG12g06880Cp4.1LG17g08190Cucurbita pepo (Zucchini)cpecpeB157
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g06880Cucurbita pepo (Zucchini)cpecpeB156
Cp4.1LG12g06880Cucurbita pepo (Zucchini)cpecpeB181
Cp4.1LG12g06880Cucurbita pepo (Zucchini)cpecpeB185
Cp4.1LG12g06880Cucurbita pepo (Zucchini)cpecpeB190
Cp4.1LG12g06880Cucurbita maxima (Rimu)cmacpeB260
Cp4.1LG12g06880Cucurbita maxima (Rimu)cmacpeB465
Cp4.1LG12g06880Cucurbita moschata (Rifu)cmocpeB224
Cp4.1LG12g06880Cucurbita moschata (Rifu)cmocpeB425
Cp4.1LG12g06880Wild cucumber (PI 183967)cpecpiB138
Cp4.1LG12g06880Cucumber (Chinese Long) v2cpecuB137
Cp4.1LG12g06880Bottle gourd (USVL1VR-Ls)cpelsiB116
Cp4.1LG12g06880Watermelon (Charleston Gray)cpewcgB134
Cp4.1LG12g06880Melon (DHL92) v3.5.1cpemeB133
Cp4.1LG12g06880Cucumber (Gy14) v2cgybcpeB308
Cp4.1LG12g06880Melon (DHL92) v3.6.1cpemedB165
Cp4.1LG12g06880Silver-seed gourdcarcpeB0732
Cp4.1LG12g06880Silver-seed gourdcarcpeB1144
Cp4.1LG12g06880Silver-seed gourdcarcpeB1268
Cp4.1LG12g06880Cucumber (Chinese Long) v3cpecucB0142
Cp4.1LG12g06880Cucumber (Chinese Long) v3cpecucB0161
Cp4.1LG12g06880Wax gourdcpewgoB0200