Cp4.1LG12g06880.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG12g06880.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	RNA-binding family protein
Location	Cp4.1LG12 : 7267799 .. 7270815 (-)
Sequence length	1094

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCGTGCAGCACGGGCTTAGATCAATCTCTTCTTCCCGACTGGATAAACCTCTGGCCTCGCCTCGGGGTTCTTCCATAGCGTCTTCTGTCACTCGCACCACAAGCTCTGCTCGGCGAAAATGGCTTCCATCTCATCCATATTAACGCCGGCGAATCTCATCCAAAGCTCCATAAAACCCACGGAAATCCCGCAAAATTTATCCACTCAATTTCTCCGACCGATCTCGTTTCATCCTCGTTATACCCTCCTCCGTGTATCTCCCGGTCTTCAAACTTCCGCCGGAAAACGCTGCACCAGACTCTTCGCCGTCGCAGAAGCGGCGGTTTCTGTCCAGGATCCTAGTTCGGTGGCGGCAAGGAAATTGTACATTGGGAATATACCTAGAAATGTGGGTAATGAGGAGCTCACTCGGATTGTTGAAGAACATGGCGCTGTGGAGAAGGCTGAGGTGCGTAATTTCTGCTTGGAACTGTTCTTTTCTTTTGGTATCCTGAATTTTTGTTTGATAATCTGCGTTGTGCTTGATTTTGGCGGATTGCTGGATTTTGAAGGCTTATATCTAGTTTGTCTGGAACGTTCGCATTGATTTAGTTTACTTGTTCTTAAATTCATTAGAACTGCTCAATGTTCCCTGATTTAGTGCTGGAATGTGATTAGTTTCACTTCAATATAGACAGGATAACACTAGATAATTTATGTTAATTACTTGTATACGGTTTTCAAACTGTTCATTCCAAGTAGAAGATCTTATGCCATTATCGTCAGAGCATGCCCGTGGAGCCATTCACATAGGTTTATCCATTGTTGTTGCGGATCGGGAACTGGGTATTGGGAATCTGTTGAGGATTGTTGGGAAAGGAGTCCCATATCGGCTAATTAAGGGGTTAATCATGAGTTTATGAGGTTTTTTGGGAAAATCAAAAGCAAAGTCACGAGAGCTTATGCTTAAAAGTGGACAATATCATACTATTGTAGAGGTCCGTGATTCCTAACATGGTATCAAAGTCATGCCCTTAACCAAATGTCGAACAAAGAAGTTGTGAGCCTCGAAGGTGTGATCAAAAGTGACTCAAGTGTTGAACAAAAGGTGTAGTTTGTTCAAGGGCTCTAGAAAAGGAGTCGAGCCTCGATTAAGGGGAGGCTGTTCGAGGCTCCATAGGTTTCAGGGAAGGCTCTATAGTGTACTTTGTTCGAGGGGAGGATTGTTGGGAAAGGAGTCTCACTTCGGCTAATAAAAGGGGTTAATCATGGGTTTATAAGTAAGGAATACATCTCCATTGGTACGAGTCCTTTTGGGAAACCAAAAACAAACCATGAGAGCTTATGCTCAACGTGGACAATATCATACTATTGTGGAGGTCCGTGATTCCAAGAATTCTAGCATCGCTTTGTTCTTAAATCTTTACTTGGTAACTGTTGGTGTTGGCTTCAAGACTCTTATTTGTTCCATTTCCAGGTCATGTATGACAAATACTCAGGAAGAAGCCGCAGATTTGCCTTTGTTACCATGAAAACAGTTGATGATGCTAATGCAGTAATTGAGAAACTGAATGATACAGTAAGTTCATAGTAATACCTACAAAGTGCAACAAAAACTGTTTCCCATAGATCATATGTGCTGACAATATTGATCTAACGACAGGAAGTCGGAGGACGAACGATTAAAGTCAACATAACCGAAAAGCCTTTGGTTAATACGGTCGACATGTCTCTTCTTCAGGCAGACGAATCCCAGTTCATTGACAGTCCCTACAAAGTATATGTAGGAAACATTTCAAGTACAGTTTCTACTGACACACTCAAGAACTTCTTCTCCGAAAAGGGTAAAGTTCTCAGCGCAAAGGTTTCACGGGTTCCCGGTACCTCGAAATCGAGTGGCTATGGTTTTGTTACCTTCTCTTCAGAGGAGGAAGTCGAAGCTGCCATTTCATCTTTTAACAACGCTGTAAGTAACTCGCTTCGATTCTCTATCGTGTCGAATTTCGTGGTATCGATACCAATTTATGCACACTCTATCTCACTTTCTGGTCCATATCACATAATATCCATTGGTTTGGTAGACATTATCTGTTTCCCGAAGTAAGTGCAGCTAATATAACATCTTTGATGACTAACATGTGAGAAACTGTTCTAAAACTTGTTGATTGATAGACATTTCGAACACGAACATTGTAATGGCTCAGACACACCGCTAGCAGATATTGTCCTCTTTGGGCTTTCCCTTTCGAGCTTCCTCAAGGCTTTAAAATGCATTTGCTAGGGAAAGGTTTCCACACCCTTATAAAGGGTGTTTCGTTCTCCTCCCCAACCAATGTGGGATTGTAGGATGTCACAATATCTAGACACCAAAATCTAGACACAAGGCGGTGTGCCAGTAAGGACATTGGCCCCTAAAGGGGGGTGAATTTGGCAGGGGTCCCACATCGATTGGAGAAATGAATGAGTGCCAGCGAGGACGCTGGGCCGTGAAAGGAGGTGGATTGTGACATCCTACAATCCCATATTGGTTGGAGAGAAGAACGAAAGACCCTTTATAAAGGTGTGGAAACCTTTCCTTAGTAGATGCGTTTTAAAGCCTTAAGGGGAAGCCCGAAAAGAAAAGTCCAAAGAGAACAATATCTGTTAGCGGTGTGTTTGGGCCGTTACATACATCTTCGGTTAGTTATCGATATTACTCCGCTGTTGTTGGATGAGCCACACTCTCAAAGATGATGGCATATTGATCCAAAAAGGTTGGAAGAAGGTTCCGTGTCTGATATGTTTTTCTTTGCTGCAGTTATTGGAAGGCCAACCAATCCGCGTAAACAAGGCATAATTTTGTAGAACAAAATGTAAGGAAGTTTCACTTTTGCTTCTTGTTTCGACAGCGAATGGTCGATCGTTCTTTAGACTCGGTTTTGTGTTGTTTTTAGTTTTTTGAAATGTATGCTTAGCTTTCACATTTCTTACATATTTGAGGAGTGACTTGTACTTGGTTCGAGGAAACGAGTATTAAATTTCATGCGATTACTTATAC

mRNA sequence

TGCGTGCAGCACGGGCTTAGATCAATCTCTTCTTCCCGACTGGATAAACCTCTGGCCTCGCCTCGGGGTTCTTCCATAGCGTCTTCTGTCACTCGCACCACAAGCTCTGCTCGGCGAAAATGGCTTCCATCTCATCCATATTAACGCCGGCGAATCTCATCCAAAGCTCCATAAAACCCACGGAAATCCCGCAAAATTTATCCACTCAATTTCTCCGACCGATCTCGTTTCATCCTCGTTATACCCTCCTCCGTGTATCTCCCGGTCTTCAAACTTCCGCCGGAAAACGCTGCACCAGACTCTTCGCCGTCGCAGAAGCGGCGGTTTCTGTCCAGGATCCTAGTTCGGTGGCGGCAAGGAAATTGTACATTGGGAATATACCTAGAAATGTGGGTAATGAGGAGCTCACTCGGATTGTTGAAGAACATGGCGCTGTGGAGAAGGCTGAGGTCATGTATGACAAATACTCAGGAAGAAGCCGCAGATTTGCCTTTGTTACCATGAAAACAGTTGATGATGCTAATGCAGTAATTGAGAAACTGAATGATACAGAAGTCGGAGGACGAACGATTAAAGTCAACATAACCGAAAAGCCTTTGGTTAATACGGTCGACATGTCTCTTCTTCAGGCAGACGAATCCCAGTTCATTGACAGTCCCTACAAAGTATATGTAGGAAACATTTCAAGTACAGTTTCTACTGACACACTCAAGAACTTCTTCTCCGAAAAGGGTAAAGTTCTCAGCGCAAAGGTTTCACGGGTTCCCGGTACCTCGAAATCGAGTGGCTATGGTTTTGTTACCTTCTCTTCAGAGGAGGAAGTCGAAGCTGCCATTTCATCTTTTAACAACGCTTTATTGGAAGGCCAACCAATCCGCGTAAACAAGGCATAATTTTGTAGAACAAAATGTAAGGAAGTTTCACTTTTGCTTCTTGTTTCGACAGCGAATGGTCGATCGTTCTTTAGACTCGGTTTTGTGTTGTTTTTAGTTTTTTGAAATGTATGCTTAGCTTTCACATTTCTTACATATTTGAGGAGTGACTTGTACTTGGTTCGAGGAAACGAGTATTAAATTTCATGCGATTACTTATAC

Coding sequence (CDS)

ATGGCTTCCATCTCATCCATATTAACGCCGGCGAATCTCATCCAAAGCTCCATAAAACCCACGGAAATCCCGCAAAATTTATCCACTCAATTTCTCCGACCGATCTCGTTTCATCCTCGTTATACCCTCCTCCGTGTATCTCCCGGTCTTCAAACTTCCGCCGGAAAACGCTGCACCAGACTCTTCGCCGTCGCAGAAGCGGCGGTTTCTGTCCAGGATCCTAGTTCGGTGGCGGCAAGGAAATTGTACATTGGGAATATACCTAGAAATGTGGGTAATGAGGAGCTCACTCGGATTGTTGAAGAACATGGCGCTGTGGAGAAGGCTGAGGTCATGTATGACAAATACTCAGGAAGAAGCCGCAGATTTGCCTTTGTTACCATGAAAACAGTTGATGATGCTAATGCAGTAATTGAGAAACTGAATGATACAGAAGTCGGAGGACGAACGATTAAAGTCAACATAACCGAAAAGCCTTTGGTTAATACGGTCGACATGTCTCTTCTTCAGGCAGACGAATCCCAGTTCATTGACAGTCCCTACAAAGTATATGTAGGAAACATTTCAAGTACAGTTTCTACTGACACACTCAAGAACTTCTTCTCCGAAAAGGGTAAAGTTCTCAGCGCAAAGGTTTCACGGGTTCCCGGTACCTCGAAATCGAGTGGCTATGGTTTTGTTACCTTCTCTTCAGAGGAGGAAGTCGAAGCTGCCATTTCATCTTTTAACAACGCTTTATTGGAAGGCCAACCAATCCGCGTAAACAAGGCATAA

Protein sequence

MASISSILTPANLIQSSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRCTRLFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSPYKVYVGNISSTVSTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA

Homology

[Close]

BLAST of Cp4.1LG12g06880.1 vs. Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 9.1e-72
Identity = 155/262 (59.16%), Postives = 193/262 (73.66%), Query Frame = 1


Query: 1   MASISSILTPANLIQ--SSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRC 60
           MA+ISSIL    L+Q  SS   +  P+  S   ++  SF   + L ++   + T+     
Sbjct: 1   MATISSILPCHGLLQHCSSSSSSSKPKFSSQNLVQLQSFSNGFGL-KLKTRVSTNPPLLK 60

Query: 61  TRLFAVAEAAVSVQDPSSV---AARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDK 120
            R     E + S    SS     AR+LY+GNIPRN+ N+EL  IVEEHGA+E AEVMYDK
Sbjct: 61  VRAVVTEETSSSSTASSSSDGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDK 120

Query: 121 YSGRSRRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQ 180
           YSGRSRRF FVTMKTV+DANAVIEKLNDTE+GGR IKVNITEKPL   +D++  QA++SQ
Sbjct: 121 YSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPL-EGMDIATTQAEDSQ 180

Query: 181 FIDSPYKVYVGNISSTVSTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEV 240
           F++SPYKVY+GN++ TV+ + LK+FFSEKGKVL AKV R PGTSKS+G+GFV+FSSEEEV
Sbjct: 181 FVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEV 240

Query: 241 EAAISSFNNALLEGQPIRVNKA 258
           EAAI + NN++LEGQ IRVNKA
Sbjct: 241 EAAIQALNNSVLEGQKIRVNKA 260

[Close]

BLAST of Cp4.1LG12g06880.1 vs. Swiss-Prot
Match: CP33_ARATH (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana GN=CP33 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.5e-31
Identity = 67/179 (37.43%), Postives = 115/179 (64.25%), Query Frame = 1


Query: 81  KLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAVIEK 140
           +LY+GN+P  + + EL++I  E G V   +++YDK + RSR F FVTM ++++A   ++ 
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176

Query: 141 LNDTEVGGRTIKVNITEKPL--VNTVDMSLLQADESQFIDSPYKVYVGNISSTVSTDTLK 200
            N +++GGRT+KVN  E P    N V  + ++ +   ++DSP+KVY GN+   +++  LK
Sbjct: 177 FNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLK 236

Query: 201 NFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA 258
           + F ++  VL AKV     T +S G+GF++F S E V++A+++ N   +EG+ +R+N A
Sbjct: 237 DAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLA 295

[Close]

BLAST of Cp4.1LG12g06880.1 vs. Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 4.6e-31
Identity = 71/187 (37.97%), Postives = 119/187 (63.64%), Query Frame = 1


Query: 73  DPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVD 132
           +  SV   +LY+GN+P ++ + +L+ I  E G V   E++YD+ + RSR FAFVTM +V+
Sbjct: 107 ESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVE 166

Query: 133 DANAVIEKLNDTEVGGRTIKVNITEKPL--VNTVDMSLLQADESQFIDSPYKVYVGNISS 192
           +A   I   + ++VGGRT+KVN  E P      V  + +++    F+DSP+K+YV N+S 
Sbjct: 167 EAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSW 226

Query: 193 TVSTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQ 252
            +++  L++ F+++   +SAKV     + +S G+GF+TFSS E + +A+ + N   LEG+
Sbjct: 227 ALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGR 286

Query: 253 PIRVNKA 258
           P+R+N A
Sbjct: 287 PLRLNVA 293

[Close]

BLAST of Cp4.1LG12g06880.1 vs. Swiss-Prot
Match: CP29B_ARATH (RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana GN=CP29B PE=1 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 6.8e-27
Identity = 76/200 (38.00%), Postives = 113/200 (56.50%), Query Frame = 1


Query: 72  QDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTV 131
           ++ S  A  KL++GN+P NV + +L ++ E  G VE  EV+YDK +GRSR F FVTM +V
Sbjct: 83  KEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSV 142

Query: 132 DDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQF--------------I 191
            +  A  ++ N  E+ GR ++VN    P       S  +   S F               
Sbjct: 143 SEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFS--RGPRSSFGSSGSGYGGGGGSGA 202

Query: 192 DSPYKVYVGNISSTVSTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEA 251
            S  +VYVGN+S  V    L++ FSE+GKV+ A+V     + +S G+GFVT+ S +EV+ 
Sbjct: 203 GSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQN 262

Query: 252 AISSFNNALLEGQPIRVNKA 258
           AI S + A L+G+ IRV++A
Sbjct: 263 AIKSLDGADLDGRQIRVSEA 280

[Close]

BLAST of Cp4.1LG12g06880.1 vs. Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.2e-26
Identity = 70/177 (39.55%), Postives = 101/177 (57.06%), Query Frame = 1


Query: 81  KLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAVIEK 140
           K+++GN+P +  +  L  + E  G VE  EV+YDK +GRSR F FVTM + ++  A  ++
Sbjct: 88  KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147

Query: 141 LNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSPYKVYVGNISSTVSTDTLKNF 200
            N  E+ GR ++VN    P           +      DS  +VYVGN++  V  D L+  
Sbjct: 148 FNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETL 207

Query: 201 FSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA 258
           FSE+GKV+ AKV     + +S G+GFVT+SS EEV  AI S +   L G+ IRV+ A
Sbjct: 208 FSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 264

[Close]

BLAST of Cp4.1LG12g06880.1 vs. TrEMBL
Match: A0A0A0K8E7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G428960 PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 6.3e-104
Identity = 207/241 (85.89%), Postives = 219/241 (90.87%), Query Frame = 1


Query: 17  SIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRCTRLFAVAEAAVSVQDPSS 76
           S KPT+IPQ LS+QFLRPISFHP + LLR+SP     A K  TRLFAVAE  V+ Q  SS
Sbjct: 31  SKKPTDIPQTLSSQFLRPISFHPPHILLRISP----VAAKPPTRLFAVAE--VATQGASS 90

Query: 77  VAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA 136
           VA RKLYIGNIPRNV NEELTRIV+EHGAVEKAEVMYDKYSGRSRRFAFVTMKTV+DANA
Sbjct: 91  VAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANA 150

Query: 137 VIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSPYKVYVGNISSTVSTDT 196
            IEKLN+TEVGGR IKVNITEKP+VNTVDMS LQA+ESQFIDSPYKVYVGNISSTVST+T
Sbjct: 151 AIEKLNETEVGGRKIKVNITEKPVVNTVDMSFLQAEESQFIDSPYKVYVGNISSTVSTET 210

Query: 197 LKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNK 256
           LKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEV+AAISSFNNALLEGQPIRVNK
Sbjct: 211 LKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAISSFNNALLEGQPIRVNK 265

Query: 257 A 258
           A
Sbjct: 271 A 265

[Close]

BLAST of Cp4.1LG12g06880.1 vs. TrEMBL
Match: M5X3H8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010401mg PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 3.0e-82
Identity = 171/257 (66.54%), Postives = 201/257 (78.21%), Query Frame = 1


Query: 1   MASISSILTPANLIQSSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRCTR 60
           MA+ISS+L+P NL+    KP +    LS Q L+P  F       +++        +   R
Sbjct: 1   MATISSLLSPPNLLHHHTKPIKAAPKLSLQILKPTQFQG---FQKLTSSYMILTPRHSQR 60

Query: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120
           + AVAE   +  DPSS AAR++YIGNIPR V N ELT+IVEEHGAVEKAEVM+DKYSGRS
Sbjct: 61  VSAVAEEVAA--DPSSKAARRVYIGNIPRTVDNAELTKIVEEHGAVEKAEVMFDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSP 180
           RRFAFVT KTV+DAN+++EKLN TE+GGR IKVNITEKPL+   D+SLLQA+ESQFIDSP
Sbjct: 121 RRFAFVTAKTVEDANSIVEKLNGTEIGGREIKVNITEKPLLQA-DVSLLQAEESQFIDSP 180

Query: 181 YKVYVGNISSTVSTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240
           +KVYVGN+   V+TDTLK  FSEKGKVLSAKVSRVPGTSKSSG+GFV+FSSEE+VEAAIS
Sbjct: 181 HKVYVGNLGKEVTTDTLKTLFSEKGKVLSAKVSRVPGTSKSSGFGFVSFSSEEDVEAAIS 240

Query: 241 SFNNALLEGQPIRVNKA 258
           SFNN L EGQ IRVNKA
Sbjct: 241 SFNNTLFEGQRIRVNKA 251

[Close]

BLAST of Cp4.1LG12g06880.1 vs. TrEMBL
Match: B9HNK5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s07030g PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 5.2e-82
Identity = 178/262 (67.94%), Postives = 207/262 (79.01%), Query Frame = 1


Query: 1   MASISSILTPANLIQSSIKPTEIPQNLSTQFLRP---ISFHPRYTLLRVSPGLQTSAGKR 60
           MA+ISS+ TP     + +  +      S Q L+P    +  P++T L     L T A +R
Sbjct: 1   MATISSLTTPLPT-STKLALSRNQSKPSFQILKPANPFNHFPKFTHLHKI--LNTKAPQR 60

Query: 61  CTRLFAVAE--AAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDK 120
              LFAVAE  A  +  DPSS AAR+LY+GNIPR + NEELT+IVEEHGAVEKAEVMYDK
Sbjct: 61  ---LFAVAEETAPAAAVDPSSEAARRLYVGNIPRTLTNEELTKIVEEHGAVEKAEVMYDK 120

Query: 121 YSGRSRRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQ 180
           YSGRSRRFAFVTMKT +DANA IEKLN TE+GGR IKVNITEKPL  ++D+  LQ+DESQ
Sbjct: 121 YSGRSRRFAFVTMKTAEDANAAIEKLNGTEIGGREIKVNITEKPL-QSLDLPSLQSDESQ 180

Query: 181 FIDSPYKVYVGNISSTVSTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEV 240
           F+DSPYKVYVGN++ TV+TDTLKNFFS+KG VLSAKVSRVPGTSKSSG+GFVTFSSEE+V
Sbjct: 181 FVDSPYKVYVGNLAKTVATDTLKNFFSKKGNVLSAKVSRVPGTSKSSGFGFVTFSSEEDV 240

Query: 241 EAAISSFNNALLEGQPIRVNKA 258
           E AISSFNN+LLEGQPIRVNKA
Sbjct: 241 EVAISSFNNSLLEGQPIRVNKA 255

[Close]

BLAST of Cp4.1LG12g06880.1 vs. TrEMBL
Match: A0A061DVN6_THECC (RNA-binding family protein OS=Theobroma cacao GN=TCM_005932 PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 8.8e-82
Identity = 174/258 (67.44%), Postives = 204/258 (79.07%), Query Frame = 1


Query: 1   MASISSILTPANLIQSSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRCTR 60
           MASISS+++P  L   +     +   L  Q L+P + +P      +   L  ++  +  R
Sbjct: 1   MASISSLISPPGLPNPAKLSLTLQSKLFLQILQPTT-NP---FANLPQNLLLNSRPKKVR 60

Query: 61  LFAVAEAAVSV-QDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGR 120
           LFAVAE   SV   PSS AAR+LYIGNIPR V N+ELT+IVEEHGAVEKAEVMYDKYSGR
Sbjct: 61  LFAVAEEQTSVVSSPSSEAARRLYIGNIPRTVNNDELTKIVEEHGAVEKAEVMYDKYSGR 120

Query: 121 SRRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDS 180
           SRRFAFVTMKTV+DANA IEKLN TE+G R IKVNITEKPL   VD+SLLQ ++SQF+DS
Sbjct: 121 SRRFAFVTMKTVEDANAAIEKLNGTEIGQREIKVNITEKPLPQ-VDLSLLQDEDSQFVDS 180

Query: 181 PYKVYVGNISSTVSTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI 240
           P+KVYVGN++ T++TDTLK FFSEKGKVLSAKVSRVPGTSKS G+GFVTFSSEEEVEAAI
Sbjct: 181 PHKVYVGNLAKTITTDTLKKFFSEKGKVLSAKVSRVPGTSKSGGFGFVTFSSEEEVEAAI 240

Query: 241 SSFNNALLEGQPIRVNKA 258
           S+FNN+LLEGQ +RVNKA
Sbjct: 241 SAFNNSLLEGQQVRVNKA 253

[Close]

BLAST of Cp4.1LG12g06880.1 vs. TrEMBL
Match: A9PJ20_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 1.2e-81
Identity = 177/262 (67.56%), Postives = 207/262 (79.01%), Query Frame = 1


Query: 1   MASISSILTPANLIQSSIKPTEIPQNLSTQFLRP---ISFHPRYTLLRVSPGLQTSAGKR 60
           MA+ISS+ TP     + +  +      S Q L+P    +  P++T L     L T A +R
Sbjct: 1   MATISSLTTPLPT-STKLALSRNQSKPSFQILKPANPFNHFPKFTHLHKI--LNTKAPQR 60

Query: 61  CTRLFAVAE--AAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDK 120
              LFAVAE  A  +  DPSS AAR+LY+GNIPR + NEELT+IVEEHGAVEKAEVMYDK
Sbjct: 61  ---LFAVAEETAPAAAVDPSSEAARRLYVGNIPRTLTNEELTKIVEEHGAVEKAEVMYDK 120

Query: 121 YSGRSRRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQ 180
           YSGRSRRFAFVTMKT +DANA IEKLN TE+GGR IKVNITEKPL  ++D+  LQ+DE+Q
Sbjct: 121 YSGRSRRFAFVTMKTAEDANAAIEKLNGTEIGGREIKVNITEKPL-QSLDLPSLQSDETQ 180

Query: 181 FIDSPYKVYVGNISSTVSTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEV 240
           F+DSPYKVYVGN++ TV+TDTLKNFFS+KG VLSAKVSRVPGTSKSSG+GFVTFSSEE+V
Sbjct: 181 FVDSPYKVYVGNLAKTVATDTLKNFFSKKGNVLSAKVSRVPGTSKSSGFGFVTFSSEEDV 240

Query: 241 EAAISSFNNALLEGQPIRVNKA 258
           E AISSFNN+LLEGQPIRVNKA
Sbjct: 241 EVAISSFNNSLLEGQPIRVNKA 255

[Close]

BLAST of Cp4.1LG12g06880.1 vs. TAIR10
Match: AT3G52150.1 (AT3G52150.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 273.1 bits (697), Expect = 1.8e-73
Identity = 135/185 (72.97%), Postives = 164/185 (88.65%), Query Frame = 1


Query: 73  DPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVD 132
           DPSS AAR++YIGNIPR V NE+LT++VEEHGAVEK +VMYDKYSGRSRRF F TMK+V+
Sbjct: 69  DPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVE 128

Query: 133 DANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSPYKVYVGNISSTV 192
           DANAV+EKLN   V GR IKVNITEKP+ ++ D+S+LQ+++S F+DSPYKVYVGN++ TV
Sbjct: 129 DANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTV 188

Query: 193 STDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPI 252
           + + L+N FSEKGKV+SAKVSRVPGTSKS+G+GFVTFSSEE+VEAAI + NN+LLEGQ I
Sbjct: 189 TKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKI 248

Query: 253 RVNKA 258
           RVNKA
Sbjct: 249 RVNKA 253

[Close]

BLAST of Cp4.1LG12g06880.1 vs. TAIR10
Match: AT1G60000.1 (AT1G60000.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 139.8 bits (351), Expect = 2.3e-33
Identity = 87/243 (35.80%), Postives = 134/243 (55.14%), Query Frame = 1


Query: 32  LRPISFHPRYTLLRVS---PGLQTSAGKRCTRLFAVAEAAVSVQ--------------DP 91
           L   ++    TLLR +   P     + + C+R F V    ++V+              DP
Sbjct: 20  LHGCNYSSNQTLLRFNFSTPKPLLISSRSCSRRFRVLSETITVKLEEEEKDDGASAVLDP 79

Query: 92  SSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDA 151
            +    KLY GN+P NV +  L +I+++    E  EV+Y++ +G+SR FAFVTM  V+D 
Sbjct: 80  PAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDC 139

Query: 152 NAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSPYKVYVGNISSTVST 211
           N +I+ L+ TE  GR +KVN  +KP  N          E  + ++ +K++VGN+S TV++
Sbjct: 140 NIIIDNLDGTEYLGRALKVNFADKPKPN---------KEPLYPETEHKLFVGNLSWTVTS 199

Query: 212 DTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIRV 258
           ++L   F E G V+ A+V     T +S GYGFV +SS+ E+E A+ S +   LEG+ IRV
Sbjct: 200 ESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRV 253

[Close]

BLAST of Cp4.1LG12g06880.1 vs. TAIR10
Match: AT3G52380.1 (AT3G52380.1 chloroplast RNA-binding protein 33)

HSP 1 Score: 136.7 bits (343), Expect = 2.0e-32
Identity = 67/179 (37.43%), Postives = 115/179 (64.25%), Query Frame = 1


Query: 81  KLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAVIEK 140
           +LY+GN+P  + + EL++I  E G V   +++YDK + RSR F FVTM ++++A   ++ 
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176

Query: 141 LNDTEVGGRTIKVNITEKPL--VNTVDMSLLQADESQFIDSPYKVYVGNISSTVSTDTLK 200
            N +++GGRT+KVN  E P    N V  + ++ +   ++DSP+KVY GN+   +++  LK
Sbjct: 177 FNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLK 236

Query: 201 NFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA 258
           + F ++  VL AKV     T +S G+GF++F S E V++A+++ N   +EG+ +R+N A
Sbjct: 237 DAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLA 295

[Close]

BLAST of Cp4.1LG12g06880.1 vs. TAIR10
Match: AT2G37220.1 (AT2G37220.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 122.5 bits (306), Expect = 3.9e-28
Identity = 76/200 (38.00%), Postives = 113/200 (56.50%), Query Frame = 1


Query: 72  QDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTV 131
           ++ S  A  KL++GN+P NV + +L ++ E  G VE  EV+YDK +GRSR F FVTM +V
Sbjct: 83  KEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSV 142

Query: 132 DDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQF--------------I 191
            +  A  ++ N  E+ GR ++VN    P       S  +   S F               
Sbjct: 143 SEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFS--RGPRSSFGSSGSGYGGGGGSGA 202

Query: 192 DSPYKVYVGNISSTVSTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEA 251
            S  +VYVGN+S  V    L++ FSE+GKV+ A+V     + +S G+GFVT+ S +EV+ 
Sbjct: 203 GSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQN 262

Query: 252 AISSFNNALLEGQPIRVNKA 258
           AI S + A L+G+ IRV++A
Sbjct: 263 AIKSLDGADLDGRQIRVSEA 280

[Close]

BLAST of Cp4.1LG12g06880.1 vs. TAIR10
Match: AT5G50250.1 (AT5G50250.1 chloroplast RNA-binding protein 31B)

HSP 1 Score: 121.7 bits (304), Expect = 6.6e-28
Identity = 71/193 (36.79%), Postives = 110/193 (56.99%), Query Frame = 1


Query: 65  AEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFA 124
           +E  V   +P   A  KL++GN+P +V ++ L  + E+ G VE +EV+Y++ + +SR F 
Sbjct: 100 SEDGVGFPEPPEEA--KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFG 159

Query: 125 FVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSPYKVY 184
           FVTM TV++A   +EK N  EV GR + VN                  + +  D+ +++Y
Sbjct: 160 FVTMSTVEEAEKAVEKFNSFEVNGRRLTVN-------RAAPRGSRPERQPRVYDAAFRIY 219

Query: 185 VGNISSTVSTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNN 244
           VGN+   V +  L+  FSE GKV+ A+V     T +S G+GFV  S+E EV  AI++ + 
Sbjct: 220 VGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDG 279

Query: 245 ALLEGQPIRVNKA 258
             LEG+ I+VN A
Sbjct: 280 QNLEGRAIKVNVA 283

[Close]

BLAST of Cp4.1LG12g06880.1 vs. NCBI nr
Match: gi|449436259|ref|XP_004135910.1| (PREDICTED: 30S ribosomal protein 2, chloroplastic [Cucumis sativus])

HSP 1 Score: 407.5 bits (1046), Expect = 1.7e-110
Identity = 221/257 (85.99%), Postives = 233/257 (90.66%), Query Frame = 1


Query: 1   MASISSILTPANLIQSSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRCTR 60
           MASISSILTP NLI SS KPT+IPQ LS+QFLRPISFHP + LLR+SP     A K  TR
Sbjct: 1   MASISSILTPTNLIHSSKKPTDIPQTLSSQFLRPISFHPPHILLRISP----VAAKPPTR 60

Query: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAE  V+ Q  SSVA RKLYIGNIPRNV NEELTRIV+EHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAE--VATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSP 180
           RRFAFVTMKTV+DANA IEKLN+TEVGGR IKVNITEKP+VNTVDMS LQA+ESQFIDSP
Sbjct: 121 RRFAFVTMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDMSFLQAEESQFIDSP 180

Query: 181 YKVYVGNISSTVSTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240
           YKVYVGNISSTVST+TLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEV+AAIS
Sbjct: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAIS 240

Query: 241 SFNNALLEGQPIRVNKA 258
           SFNNALLEGQPIRVNKA
Sbjct: 241 SFNNALLEGQPIRVNKA 251

[Close]

BLAST of Cp4.1LG12g06880.1 vs. NCBI nr
Match: gi|659122659|ref|XP_008461258.1| (PREDICTED: 30S ribosomal protein 2, chloroplastic [Cucumis melo])

HSP 1 Score: 404.4 bits (1038), Expect = 1.4e-109
Identity = 220/257 (85.60%), Postives = 233/257 (90.66%), Query Frame = 1


Query: 1   MASISSILTPANLIQSSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRCTR 60
           MASISSILTP NLI +S KPTEI Q LS+QFLRPISFHP + LLR+SP     A +  TR
Sbjct: 1   MASISSILTPTNLIHTSKKPTEISQALSSQFLRPISFHPPHILLRISP----VAARPPTR 60

Query: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAA   Q  SSVA RKLYIGNIPRNV NEELTRIV+EHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAT--QGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSP 180
           RRFAFVTMKTV+DANA IEKLN+TEVGGR IKVNITEKP+VNTVD+S+LQA+ESQFIDSP
Sbjct: 121 RRFAFVTMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDLSILQAEESQFIDSP 180

Query: 181 YKVYVGNISSTVSTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240
           YKVYVGNISSTVST+TLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS
Sbjct: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240

Query: 241 SFNNALLEGQPIRVNKA 258
           SFNNALLEGQPIRVNKA
Sbjct: 241 SFNNALLEGQPIRVNKA 251

[Close]

BLAST of Cp4.1LG12g06880.1 vs. NCBI nr
Match: gi|700189926|gb|KGN45159.1| (hypothetical protein Csa_7G428960 [Cucumis sativus])

HSP 1 Score: 385.2 bits (988), Expect = 9.0e-104
Identity = 207/241 (85.89%), Postives = 219/241 (90.87%), Query Frame = 1


Query: 17  SIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRCTRLFAVAEAAVSVQDPSS 76
           S KPT+IPQ LS+QFLRPISFHP + LLR+SP     A K  TRLFAVAE  V+ Q  SS
Sbjct: 31  SKKPTDIPQTLSSQFLRPISFHPPHILLRISP----VAAKPPTRLFAVAE--VATQGASS 90

Query: 77  VAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA 136
           VA RKLYIGNIPRNV NEELTRIV+EHGAVEKAEVMYDKYSGRSRRFAFVTMKTV+DANA
Sbjct: 91  VAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANA 150

Query: 137 VIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSPYKVYVGNISSTVSTDT 196
            IEKLN+TEVGGR IKVNITEKP+VNTVDMS LQA+ESQFIDSPYKVYVGNISSTVST+T
Sbjct: 151 AIEKLNETEVGGRKIKVNITEKPVVNTVDMSFLQAEESQFIDSPYKVYVGNISSTVSTET 210

Query: 197 LKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNK 256
           LKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEV+AAISSFNNALLEGQPIRVNK
Sbjct: 211 LKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAISSFNNALLEGQPIRVNK 265

Query: 257 A 258
           A
Sbjct: 271 A 265

[Close]

BLAST of Cp4.1LG12g06880.1 vs. NCBI nr
Match: gi|1009106197|ref|XP_015873244.1| (PREDICTED: 30S ribosomal protein 2, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 321.2 bits (822), Expect = 1.6e-84
Identity = 179/260 (68.85%), Postives = 208/260 (80.00%), Query Frame = 1


Query: 1   MASISSILTPANLIQSSIKPTEIPQN---LSTQFLRPISFHPRYTLLRVSPGLQTSAGKR 60
           MA ISS+L+P  LI   IK  + P +   +S  FL P  F     L +++      + + 
Sbjct: 1   MAVISSLLSPHTLIFHPIKSNQTPPSPPKISFHFLNPTPFQ---VLPKLTSNYLVLSPRE 60

Query: 61  CTRLFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYS 120
             RLFAVAE   +  DPSS AA++LY+GNIPRN+ NEELT+I  EHGAVEKAEVMYDKYS
Sbjct: 61  SHRLFAVAEDVSA--DPSSEAAKRLYVGNIPRNINNEELTKIFGEHGAVEKAEVMYDKYS 120

Query: 121 GRSRRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFI 180
           GRSRRFAFVTMKTV+DANA IEKLN TE+GGR IKVNITEKPL   VD+SLLQA+ESQFI
Sbjct: 121 GRSRRFAFVTMKTVEDANAAIEKLNGTEIGGREIKVNITEKPLTR-VDLSLLQAEESQFI 180

Query: 181 DSPYKVYVGNISSTVSTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEA 240
           DSP+KVYVGN++ TV+TDTLKNFFSEKG VLSAKVSR+PGTSKSSG+GFV+FSSEE+VEA
Sbjct: 181 DSPHKVYVGNLAKTVTTDTLKNFFSEKGNVLSAKVSRLPGTSKSSGFGFVSFSSEEDVEA 240

Query: 241 AISSFNNALLEGQPIRVNKA 258
           AISSFNN+LLEGQ IRVNKA
Sbjct: 241 AISSFNNSLLEGQKIRVNKA 254

[Close]

BLAST of Cp4.1LG12g06880.1 vs. NCBI nr
Match: gi|645250702|ref|XP_008231332.1| (PREDICTED: 30S ribosomal protein 2, chloroplastic [Prunus mume])

HSP 1 Score: 316.6 bits (810), Expect = 3.9e-83
Identity = 173/257 (67.32%), Postives = 202/257 (78.60%), Query Frame = 1


Query: 1   MASISSILTPANLIQSSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRCTR 60
           MA+ISS+L+P NL+    KP +    LS Q L+P  F   + L   +        +   R
Sbjct: 1   MATISSLLSPPNLLHHPTKPIKAAPKLSLQILKPTQFQGFHKL---TSSYMILTPRHSQR 60

Query: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120
           +FAVAE   +  DPSS AAR++YIGNIPR V N ELT+IVEEHGAVEKAEVM+DKYSGRS
Sbjct: 61  VFAVAEEVAA--DPSSKAARRVYIGNIPRTVDNAELTKIVEEHGAVEKAEVMFDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSP 180
           RRFAFVT KTV+DAN+++EKLN TE+GGR IKVNITEKPL+   D+SLLQA+ESQFIDSP
Sbjct: 121 RRFAFVTAKTVEDANSIVEKLNGTEIGGREIKVNITEKPLLQA-DVSLLQAEESQFIDSP 180

Query: 181 YKVYVGNISSTVSTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240
           +KVYVGN+   V+TDTLK  FSEKGKVLSAKVSRVPGTSKSSG+GFV+FSSEE+VEAAIS
Sbjct: 181 HKVYVGNLGKEVTTDTLKTLFSEKGKVLSAKVSRVPGTSKSSGFGFVSFSSEEDVEAAIS 240

Query: 241 SFNNALLEGQPIRVNKA 258
           SFNN L EGQ IRVNKA
Sbjct: 241 SFNNTLFEGQRIRVNKA 251

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g06880.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RRP2_SPIOL	9.1e-72	59.16	30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1	[more]
CP33_ARATH	3.5e-31	37.43	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana GN=CP33 PE=2 SV=...	[more]
ROC5_NICSY	4.6e-31	37.97	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1	[more]
CP29B_ARATH	6.8e-27	38.00	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana GN=CP29B PE=1 S...	[more]
ROC1_NICSY	1.2e-26	39.55	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1	[more]

BLAST of Cp4.1LG12g06880.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8E7_CUCSA	6.3e-104	85.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G428960 PE=4 SV=1	[more]
M5X3H8_PRUPE	3.0e-82	66.54	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010401mg PE=4 SV=1	[more]
B9HNK5_POPTR	5.2e-82	67.94	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s07030g PE=4 SV=1	[more]
A0A061DVN6_THECC	8.8e-82	67.44	RNA-binding family protein OS=Theobroma cacao GN=TCM_005932 PE=4 SV=1	[more]
A9PJ20_9ROSI	1.2e-81	67.56	Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2...	[more]

BLAST of Cp4.1LG12g06880.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G52150.1	1.8e-73	72.97	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G60000.1	2.3e-33	35.80	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52380.1	2.0e-32	37.43	chloroplast RNA-binding protein 33	[more]
AT2G37220.1	3.9e-28	38.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G50250.1	6.6e-28	36.79	chloroplast RNA-binding protein 31B	[more]

BLAST of Cp4.1LG12g06880.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449436259\|ref\|XP_004135910.1\|	1.7e-110	85.99	PREDICTED: 30S ribosomal protein 2, chloroplastic [Cucumis sativus]	[more]
gi\|659122659\|ref\|XP_008461258.1\|	1.4e-109	85.60	PREDICTED: 30S ribosomal protein 2, chloroplastic [Cucumis melo]	[more]
gi\|700189926\|gb\|KGN45159.1\|	9.0e-104	85.89	hypothetical protein Csa_7G428960 [Cucumis sativus]	[more]
gi\|1009106197\|ref\|XP_015873244.1\|	1.6e-84	68.85	PREDICTED: 30S ribosomal protein 2, chloroplastic [Ziziphus jujuba]	[more]
gi\|645250702\|ref\|XP_008231332.1\|	3.9e-83	67.32	PREDICTED: 30S ribosomal protein 2, chloroplastic [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR003954	RRM_dom_euk
IPR000504	RRM_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0045036	protein targeting to chloroplast
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG12g06880	Cp4.1LG12g06880	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG12g06880.1	Cp4.1LG12g06880.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG12g06880.1:five_prime_utr:001	Cp4.1LG12g06880.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG12g06880.1:cds:001	Cp4.1LG12g06880.1:cds:001	CDS
Cp4.1LG12g06880.1:cds:002	Cp4.1LG12g06880.1:cds:002	CDS
Cp4.1LG12g06880.1:cds:003	Cp4.1LG12g06880.1:cds:003	CDS
Cp4.1LG12g06880.1:cds:004	Cp4.1LG12g06880.1:cds:004	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG12g06880.1:three_prime_utr:001	Cp4.1LG12g06880.1:three_prime_utr:001	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 183..253 score: 8.7E-18coord: 82..152 score: 4.5
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 81..154 score: 2.5E-24coord: 182..255 score: 3.0
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 181..257 score: 18.24coord: 80..158 score: 17
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 182..255 score: 0.37coord: 81..154 score:
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 177..257 score: 1.5E-23coord: 73..157 score: 2.2
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 174..257 score: 3.63E-24coord: 71..158 score: 1.61
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 180..257 score: 1.7E-44coord: 80..160 score: 1.7