Cp4.1LG17g08190 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG17g08190
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	RNA-binding family protein
Location	Cp4.1LG17 : 5395516 .. 5399765 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGCACGTGCGGTAAGCACGTGTGTGAACCTTCATGCCGACTGGATAAACCGCTGGGCTCGCTCGCCTCAGGGTTCCGTTCTTGTCGCTTCGGAACACAAAGCTTTACAGACCAAAAATGGCTTCCATCTCTGCCGTATTATCGCCAACGAATCTCATCCACAGTTCCATAAAACCCGCCGAAATCCTTCTCACATCAGTCTCATTTCACCGCCGTCGTACCCATACCTTCCTCCGCCTATCTCCCGGTCGCCCCACGAGACTCTTCGCGGCGCTTACTGCTCAGGATTCCAGTTCAGTGGCGGAAAGGAAATTGTACGTCGGGAATATACCTAGAAATGTGGATAATGAGGAGCTCAAGCGGATTGTTGAAGAACATGGGGCTGTGGAGAAGGCTGAGGTGCGTAATTTATGATTGATTTTTTTTTCTTCTTATTGTACATTTTGAAATTTGTTGCGTACCCTGCGCGTCGAGATGTTGATGTTGATGTTGAGGTTTGCCTGCTGGATTCTATTATTGAGGACTCGTATCTATCTGCTTGATTAGTTTGTCTTCAACGAATCTTCGCATGAATGTACCCTGATTTTGGCATGAATTGAATTGAGTTAATTGTTTATAAGTTAAGTTCATCAGAACTTCTGCCTGAACGTACCTTGATTTTGGGCCAAATTTGGCCACCATTTAGTTTCAAAATGGGGTTTACTTGCAGTGTCTTATCAAATCCACGAGGGAATTAAAGATGGAAAAAGTTCATAGGAGAGGGAAGGAATAGTTCATTGGAGGGGAAAGGATAGTTATGCTCTGTTAGTTACAATAAGCTGCAGCCATTTATCAAAAGGAAGAAGGATGTACAGGACGATTTTAGGGGAAAGGAGAATCGAATCCTGTGAAATGCTCACCACGGGCTCATAGAAATTCCATAGGACGTTAAAACTTAATTTTTGCTGCTTTCGGGTTTATCGCTTCAGTGTTGTTGTGTTTGTACGAGAGTATCTAAGATGAGTACCAAACAGTCCCTGAAATGAAGTAGCTCATGACATGTCTTTAATGATGTATTTCTTGCAATCAATTTACTTGAAGAATTCTAGCATCTTCTTGTTCTTAATCTTTACTTGCTAACTGTTGGTATTGTCTTTAAAACTCCAATTTTGTTCCATTTCCAGGTCATGTATGACAAATACTCTGGAAGAAGCCGCAGGTTTGCCTTTGTTACCATGAAAACGGTTGACGACGCAAATGCAGCAATTGAGAAACTGAATGAGACGGTAAGCTAAATACCTATCAAGTGCAACAAAAATCGAAAAAGAACAAGAACAAAACTATCGTTTCTTACTGTTCACTAGAATCTAGATAGATGAATTGTGCTGACTCTATCGGTCTAATGACAGGACGTTGGGGGACGTACAATTAAAGTCAATATAACCGAAAAACCTGTGGTAAATACGGTTGATATGTCACTTCTTGAGGCAGAGGAATCCCAATTCATCGACAGTCCCCACAAAGTATATGTAGGAAACATTTCGAGTACTGTCTCTACTGAAACACTCAAAAACTTCTTCTCTGAGAAGGGTAAAGTTCTCAGTGCAAAGGTTTCACGGGTTCCCGGTACATCGAAAGCAAGTGGCTACGGTTTTGTTACCTTTTCTTCCGAGGAGGAAGTCGAAGCTGCCATTTCATCTTTTAACAATGCTGTAAGTAACTCGCTTCCAGTCTTTATCACGTCGAACGTTTTGACACCAATACTGATTTATGCAAACTCTACCTCATTTTCTGGTCGGGTTTCATGCATTGGCAACATTTTTTCTCACATTGTCTAGTAGAGCATACCTTGTTTCATTTTCTGTTTCCCTGAACAATTACATATAGAGTAGCATTCTGATCACCCACTTGTAAGAAGCATTTCTAAACCTAGTCGATTGGTATGCCAACTCGAACAACTTACATTGATCATCGATATTACTAATAGTTGGACAAGCTATGTTCATCAAAGATGATGGCATACTTCCCTGAAAACTCTCATGCACATTTCTCGTTTCCGAACGGGTGGAAGAAGCTTGTGTCTGATATGTGTTTTCTTTGCTGCAGTTGTTGGAAGGTCAACCAATTCGTGTAAACAAGGCATAGTTTTGTAGGATTCTTTGTAACAAAAGGTATGCAAATTTCGCTTTTTACCTCTTGGCATGAATTAATGAACAGCAGAGGTCAGATTTTTCTCTCAATTTCTCTGTATTGATCATTAATGTATAATCTTGTTTATTTTTCTGTTTAAGATTTGACTATTTGCAAATCTTTACTTGTTCCTCAAATTCCACGTTTGACTGTTCAACTATTTGCAGTCCTCATGTGCACTATAAATACATCATCTTCTCAAAGGAATTACTCATTTCTCAAATTCTCAGTTCCTTCTGCTTTGGTTTCTCAAAACCCAGAAAACAATGATTCTCTCTCTTCTCTCAGCTTTCATAGATTGCTTCCTTCCTTCTCTCTCCCCAAAGGCTTCCCATGGCGGAAGATCATGTAAACCCCAAACTCAAACAACAGCCTCCAAACTGACACCTGAAGCTGATTCGCAGCTCCCTCAAGCTCCTATAATCGTGTCTCATTTCCCAGTTTCTGCAAATTTATCTTGCTTGTGATTTCCTTGATGAACTCTGGTCTTCAATGGAAACCTCTTGGATCGAATCTGAAAAGGATGAAGTTTTGTCTTTGATCATGTTGTCTCTCGAGTTCAGTCATGGGTGTTTGTAGAACTAGTTTCTTTCTTGTTCCATCTCTGGTTTTGATTCTTTTTTTCCTTTTTGGAGATTAATATACAACGTTTTTCTTGTAATTTCTTGGTTTCTTCGATGGGTATTGACTTTTCTATCTCATGTCTGTAATGGGTCTTAATTAAAATGTTAGAATACTCCAAATAGCCTTTTATATTTACTACTTTTTTTAGGATGGGTCTTTTAGTAGCATAAGGTCAAAGACACTTGAAATAATTGCTCTGAAGTCTATAATTTTCAAACAAAATGTTAAAAATATTGATATAAGATTAAATTTATCAGCTCACTTTTTTGAGCTAATAGATGATTTAATATAAATATTATAGTAAGAGGTCATATGTCTAAACTCCTATAATGCCATTCATTTATAATTATAACTGCTCAAGCCCACCGTTAGCAGATATTGTCCAGAGCCCTTAAGAGGGTGGATACAATGATATTATTAGAGTTAGACACCGGGCGGTGTATTAATGAGGACACTGAGCCTCGGAAGGAGGTGGACATCAGGTAATGTGATGGTGAGAACACTGGGTCCCAAAGGGGTGGACACTGGGTGGTGTGTCAACAAGGACATTGGACCACGAAGAGGGTGGATTGTGAGATCCCATATTGAAACATTGTTTATAAGGGTGTAGAATGGATTATGAGATCCCATATTGGTTGGAGAAGGAAATGAAACTCACAATCCCATATTGGTTGTGTGGAAATCTCTCCTTAAGCAAACACGTTTTAAAAACTTTTGAAAAGAAACCTCTAAAGGGTGTTGGCTCTTGCATGTTGAAGGAAGTTAAGATAGTTCCTTTGGAGGAAAGTGGAACAATAAAGGTTGTTGAAGAAAATGAAGCAGATGATAATGCATACATGGAGGAATCATCTGATTTTATTACACTGGAGAGTTGTGTAAATTTTATGACAGTATTGACCGAAGAGGGCGACTCGAGTAAAAAATGCAAGGTTGTGGAGCAGATAAGACTTTTACTCAAGGATGATGATGAAGCTCGAATTTTGATGGGAGCCAATGGCTTTCCTGAAGCACTCATGGAATTCCTAACTTTAGCTCTTATTGAAGAAAACGCCGATGCTCAGGAAAGTGGAGCCATGGCTCTCTTCAATCTTTCTGTCAACAACAACAGGTATGTACTGTTTATCTAAGCCTACGTTCGAAAACGAAAGTACATTTTGGCCATAACGTAGACTGAATAGTGGCAAATCTGGCATCTTACATGATAGTTGTGTGCATGTTTCATATTTCTGTCAAGAAAATCATGATGAAAGAGATAGCATATCATGAATTGATTGTAACTCGATTGATGGTTTTGACCTAAAGTCTATCATATATTCTGAAACATATGGTTAGATTAGGGTCAGAATAACATTTCGACTTCATATAAACCCCAATCTCGGAAAGAGACTCTGTCTTTGTCGATCTCTCTCGCTCGAGGAGGGAATAAAATGTATGTTTGTTCTCTTATCTAAATTCTG

mRNA sequence

TGGCACGTGCGGTAAGCACGTGTGTGAACCTTCATGCCGACTGGATAAACCGCTGGGCTCGCTCGCCTCAGGGTTCCGTTCTTGTCGCTTCGGAACACAAAGCTTTACAGACCAAAAATGGCTTCCATCTCTGCCGTATTATCGCCAACGAATCTCATCCACAGTTCCATAAAACCCGCCGAAATCCTTCTCACATCAGTCTCATTTCACCGCCGTCGTACCCATACCTTCCTCCGCCTATCTCCCGGTCGCCCCACGAGACTCTTCGCGGCGCTTACTGCTCAGGATTCCAGTTCAGTGGCGGAAAGGAAATTGTACGTCGGGAATATACCTAGAAATGTGGATAATGAGGAGCTCAAGCGGATTGTTGAAGAACATGGGGCTGTGGAGAAGGCTGAGGTCATGTATGACAAATACTCTGGAAGAAGCCGCAGGTTTGCCTTTGTTACCATGAAAACGGTTGACGACGCAAATGCAGCAATTGAGAAACTGAATGAGACGGACGTTGGGGGACGTACAATTAAAGTCAATATAACCGAAAAACCTGTGGTAAATACGGTTGATATGTCACTTCTTGAGGCAGAGGAATCCCAATTCATCGACAGTCCCCACAAAGTATATGTAGGAAACATTTCGAGTACTGTCTCTACTGAAACACTCAAAAACTTCTTCTCTGAGAAGGGTAAAGTTCTCAGTGCAAAGGTTTCACGGGTTCCCGGTACATCGAAAGCAAGTGGCTACGGTTTTGTTACCTTTTCTTCCGAGGAGGAAGTCGAAGCTGCCATTTCATCTTTTAACAATGCTTTGTTGGAAGGTCAACCAATTCGTGTAAACAAGGCATAGTTTTGTAGGATTCTTTGTAACAAAAGCTTTCATAGATTGCTTCCTTCCTTCTCTCTCCCCAAAGGCTTCCCATGGCGGAAGATCATGTAAACCCCAAACTCAAACAACAGCCTCCAAACTGACACCTGAAGCTGATTCGCAGCTCCCTCAAGCTCCTATAATCGTGTCTCATTTCCCAGTTTCTGCAAATTTATCTTGCTTGTGATTTCCTTGATGAACTCTGGTCTTCAATGGAAACCTCTTGGATCGAATCTGAAAAGGATGAAGTTTTGTCTTTGATCATGTTGTCTCTCGAGTTCAGTCATGGGTGTTTGTAGAACTAGTTTCTTTCTTGTTCCATCTCTGGTTTTGATTCTTTTTTTCCTTTTTGGAGATTAATATACAACGTTTTTCTTGTAATTTCTTGGTTTCTTCGATGGGTATTGACTTTTCTATCTCATGTCTGTAATGGGTCTTAATTAAAATGTTAGAATACTCCAAATAGCCTTTTATATTTACTACTTTTTTTAGGATGGGTCTTTTAGTAGCATAAGGTCAAAGACACTTGAAATAATTGCTCTGAAGTCTATAATTTTCAAACAAAATGTTAAAAATATTGATATAAGATTAAATTTATCAGCTCACTTTTTTGAGCTAATAGATGATTTAATATAAATATTATAGTAAGAGGTCATATGTCTAAACTCCTATAATGCCATTCATTTATAATTATAACTGCTCAAGCCCACCGTTAGCAGATATTGTCCAGAGCCCTTAAGAGGGTGGATACAATGATATTATTAGAGTTAGACACCGGGCGGTGTATTAATGAGGACACTGAGCCTCGGAAGGAGGTGGACATCAGGTAATGTGATGGTGAGAACACTGGGTCCCAAAGGGGTGGACACTGGGTGGTGTGTCAACAAGGACATTGGACCACGAAGAGGGTGGATTGTGAGATCCCATATTGAAACATTGTTTATAAGGGTGTAGAATGGATTATGAGATCCCATATTGGTTGGAGAAGGAAATGAAACTCACAATCCCATATTGGTTGTGTGGAAATCTCTCCTTAAGCAAACACGTTTTAAAAACTTTTGAAAAGAAACCTCTAAAGGGTGTTGGCTCTTGCATGTTGAAGGAAGTTAAGATAGTTCCTTTGGAGGAAAGTGGAACAATAAAGGTTGTTGAAGAAAATGAAGCAGATGATAATGCATACATGGAGGAATCATCTGATTTTATTACACTGGAGAGTTGTGTAAATTTTATGACAGTATTGACCGAAGAGGGCGACTCGAGTAAAAAATGCAAGGTTGTGGAGCAGATAAGACTTTTACTCAAGGATGATGATGAAGCTCGAATTTTGATGGGAGCCAATGGCTTTCCTGAAGCACTCATGGAATTCCTAACTTTAGCTCTTATTGAAGAAAACGCCGATGCTCAGGAAAGTGGAGCCATGGCTCTCTTCAATCTTTCTGTCAACAACAACAGGTATGTACTGTTTATCTAAGCCTACGTTCGAAAACGAAAGTACATTTTGGCCATAACGTAGACTGAATAGTGGCAAATCTGGCATCTTACATGATAGTTGTGTGCATGTTTCATATTTCTGTCAAGAAAATCATGATGAAAGAGATAGCATATCATGAATTGATTGTAACTCGATTGATGGTTTTGACCTAAAGTCTATCATATATTCTGAAACATATGGTTAGATTAGGGTCAGAATAACATTTCGACTTCATATAAACCCCAATCTCGGAAAGAGACTCTGTCTTTGTCGATCTCTCTCGCTCGAGGAGGGAATAAAATGTATGTTTGTTCTCTTATCTAAATTCTG

Coding sequence (CDS)

ATGGCTTCCATCTCTGCCGTATTATCGCCAACGAATCTCATCCACAGTTCCATAAAACCCGCCGAAATCCTTCTCACATCAGTCTCATTTCACCGCCGTCGTACCCATACCTTCCTCCGCCTATCTCCCGGTCGCCCCACGAGACTCTTCGCGGCGCTTACTGCTCAGGATTCCAGTTCAGTGGCGGAAAGGAAATTGTACGTCGGGAATATACCTAGAAATGTGGATAATGAGGAGCTCAAGCGGATTGTTGAAGAACATGGGGCTGTGGAGAAGGCTGAGGTCATGTATGACAAATACTCTGGAAGAAGCCGCAGGTTTGCCTTTGTTACCATGAAAACGGTTGACGACGCAAATGCAGCAATTGAGAAACTGAATGAGACGGACGTTGGGGGACGTACAATTAAAGTCAATATAACCGAAAAACCTGTGGTAAATACGGTTGATATGTCACTTCTTGAGGCAGAGGAATCCCAATTCATCGACAGTCCCCACAAAGTATATGTAGGAAACATTTCGAGTACTGTCTCTACTGAAACACTCAAAAACTTCTTCTCTGAGAAGGGTAAAGTTCTCAGTGCAAAGGTTTCACGGGTTCCCGGTACATCGAAAGCAAGTGGCTACGGTTTTGTTACCTTTTCTTCCGAGGAGGAAGTCGAAGCTGCCATTTCATCTTTTAACAATGCTTTGTTGGAAGGTCAACCAATTCGTGTAAACAAGGCATAG

Protein sequence

MASISAVLSPTNLIHSSIKPAEILLTSVSFHRRRTHTFLRLSPGRPTRLFAALTAQDSSSVAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAAIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA

Homology

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BLAST of Cp4.1LG17g08190 vs. Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.5e-68
Identity = 129/191 (67.54%), Postives = 163/191 (85.34%), Query Frame = 1


Query: 51  AALTAQDSSSVAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFAFV 110
           ++  +  S     R+LYVGNIPRN++N+EL+ IVEEHGA+E AEVMYDKYSGRSRRF FV
Sbjct: 71  SSTASSSSDGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFV 130

Query: 111 TMKTVDDANAAIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVG 170
           TMKTV+DANA IEKLN+T++GGR IKVNITEKP +  +D++  +AE+SQF++SP+KVY+G
Sbjct: 131 TMKTVEDANAVIEKLNDTEIGGRKIKVNITEKP-LEGMDIATTQAEDSQFVESPYKVYIG 190

Query: 171 NISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNAL 230
           N++ TV+ E LK+FFSEKGKVL AKV R PGTSK++G+GFV+FSSEEEVEAAI + NN++
Sbjct: 191 NLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSV 250

Query: 231 LEGQPIRVNKA 242
           LEGQ IRVNKA
Sbjct: 251 LEGQKIRVNKA 260

[Close]

BLAST of Cp4.1LG17g08190 vs. Swiss-Prot
Match: CP33_ARATH (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana GN=CP33 PE=2 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 8.6e-32
Identity = 71/185 (38.38%), Postives = 116/185 (62.70%), Query Frame = 1


Query: 59  SSVAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDA 118
           +S  E +LYVGN+P  + + EL +I  E G V   +++YDK + RSR F FVTM ++++A
Sbjct: 111 ASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEA 170

Query: 119 NAAIEKLNETDVGGRTIKVNITEKP--VVNTVDMSLLEAEESQFIDSPHKVYVGNISSTV 178
             A++  N + +GGRT+KVN  E P    N V  + +      ++DSPHKVY GN+   +
Sbjct: 171 KEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNL 230

Query: 179 STETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPI 238
           +++ LK+ F ++  VL AKV     T ++ G+GF++F S E V++A+++ N   +EG+ +
Sbjct: 231 TSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRAL 290

Query: 239 RVNKA 242
           R+N A
Sbjct: 291 RLNLA 295

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BLAST of Cp4.1LG17g08190 vs. Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.1e-31
Identity = 74/187 (39.57%), Postives = 119/187 (63.64%), Query Frame = 1


Query: 57  DSSSVAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVD 116
           +S SV   +LYVGN+P ++ + +L  I  E G V   E++YD+ + RSR FAFVTM +V+
Sbjct: 107 ESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVE 166

Query: 117 DANAAIEKLNETDVGGRTIKVNITEKP--VVNTVDMSLLEAEESQFIDSPHKVYVGNISS 176
           +A  AI   + + VGGRT+KVN  E P      V  + + +    F+DSPHK+YV N+S 
Sbjct: 167 EAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSW 226

Query: 177 TVSTETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQ 236
            ++++ L++ F+++   +SAKV     + ++ G+GF+TFSS E + +A+ + N   LEG+
Sbjct: 227 ALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGR 286

Query: 237 PIRVNKA 242
           P+R+N A
Sbjct: 287 PLRLNVA 293

[Close]

BLAST of Cp4.1LG17g08190 vs. Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.4e-28
Identity = 76/179 (42.46%), Postives = 106/179 (59.22%), Query Frame = 1


Query: 63  ERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAAI 122
           E KL+VGN+P +VD+E+L  I +  G VE AEV+Y++ + RSR F FVTM TV++A  A+
Sbjct: 54  EAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 113

Query: 123 EKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTETLK 182
           E LN  D+ GR + VN               E       +   +VYVGN+   V T  L+
Sbjct: 114 ELLNGYDMDGRQLTVN-------KAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLE 173

Query: 183 NFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA 242
             FSE GKV+SA+V     T ++ G+GFVT SSE EV  AI++ +   L+G+ +RVN A
Sbjct: 174 QLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVA 225

[Close]

BLAST of Cp4.1LG17g08190 vs. Swiss-Prot
Match: CP29B_ARATH (RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana GN=CP29B PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.4e-28
Identity = 77/200 (38.50%), Postives = 116/200 (58.00%), Query Frame = 1


Query: 56  QDSSSVAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTV 115
           ++ S  A+ KL+VGN+P NVD+ +L ++ E  G VE  EV+YDK +GRSR F FVTM +V
Sbjct: 83  KEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSV 142

Query: 116 DDANAAIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQF--------------I 175
            +  AA ++ N  ++ GR ++VN    P       S      S F               
Sbjct: 143 SEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFS--RGPRSSFGSSGSGYGGGGGSGA 202

Query: 176 DSPHKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEA 235
            S ++VYVGN+S  V    L++ FSE+GKV+ A+V     + ++ G+GFVT+ S +EV+ 
Sbjct: 203 GSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQN 262

Query: 236 AISSFNNALLEGQPIRVNKA 242
           AI S + A L+G+ IRV++A
Sbjct: 263 AIKSLDGADLDGRQIRVSEA 280

[Close]

BLAST of Cp4.1LG17g08190 vs. TrEMBL
Match: A0A0A0K8E7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G428960 PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 6.8e-92
Identity = 191/237 (80.59%), Postives = 205/237 (86.50%), Query Frame = 1


Query: 17  SIKPAEI-------LLTSVSFHRRRTHTFLRLSPGR---PTRLFAA--LTAQDSSSVAER 76
           S KP +I        L  +SFH    H  LR+SP     PTRLFA   +  Q +SSVAER
Sbjct: 31  SKKPTDIPQTLSSQFLRPISFHP--PHILLRISPVAAKPPTRLFAVAEVATQGASSVAER 90

Query: 77  KLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAAIEK 136
           KLY+GNIPRNV+NEEL RIV+EHGAVEKAEVMYDKYSGRSRRFAFVTMKTV+DANAAIEK
Sbjct: 91  KLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAIEK 150

Query: 137 LNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTETLKNF 196
           LNET+VGGR IKVNITEKPVVNTVDMS L+AEESQFIDSP+KVYVGNISSTVSTETLKNF
Sbjct: 151 LNETEVGGRKIKVNITEKPVVNTVDMSFLQAEESQFIDSPYKVYVGNISSTVSTETLKNF 210

Query: 197 FSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA 242
           FSEKGKVLSAKVSRVPGTSK+SGYGFVTFSSEEEV+AAISSFNNALLEGQPIRVNKA
Sbjct: 211 FSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAISSFNNALLEGQPIRVNKA 265

[Close]

BLAST of Cp4.1LG17g08190 vs. TrEMBL
Match: A0A067L6U8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04908 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 1.2e-77
Identity = 168/256 (65.62%), Postives = 201/256 (78.52%), Query Frame = 1


Query: 1   MASISAVLSP---TNLIHSSIKPA----EIL--LTSVSFHRRRTHTFLRLSPGRPTRLFA 60
           MA+IS++ SP   T  +  S  P+    +IL   T  ++  +  H  + L P  P  LFA
Sbjct: 1   MATISSLTSPLPATTKLTLSTNPSKPTFQILKQTTPFNYFPKLKHLHIILKPRIPKTLFA 60

Query: 61  A------LTAQDSSSVAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSR 120
                  +   D SS A R+LY+GNIPR VDNEELK+IVEEHGAVEK EVMYDKYSGRSR
Sbjct: 61  VAEETAPVAPADPSSEAARRLYIGNIPRTVDNEELKKIVEEHGAVEKVEVMYDKYSGRSR 120

Query: 121 RFAFVTMKTVDDANAAIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPH 180
           RFAFVTMKTV+DA+AAIEKLN + +GGR IKVNITEKP+ ++VD+S L+ EESQF+DSPH
Sbjct: 121 RFAFVTMKTVEDASAAIEKLNGSQIGGREIKVNITEKPL-SSVDLSFLQTEESQFVDSPH 180

Query: 181 KVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISS 240
           KVYVGN++ TV+TETLKNFFSEKG V+SAKVSRVPGTSK+SGYGFVTFSS+E+VEAAISS
Sbjct: 181 KVYVGNLAKTVTTETLKNFFSEKGTVVSAKVSRVPGTSKSSGYGFVTFSSDEDVEAAISS 240

Query: 241 FNNALLEGQPIRVNKA 242
           FN++LLEGQ IRVNKA
Sbjct: 241 FNDSLLEGQKIRVNKA 255

[Close]

BLAST of Cp4.1LG17g08190 vs. TrEMBL
Match: M5X3H8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010401mg PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 3.6e-77
Identity = 163/252 (64.68%), Postives = 197/252 (78.17%), Query Frame = 1


Query: 1   MASISAVLSPTNLIHSSIKPAEI-------LLTSVSFH--RRRTHTFLRLSPGRPTRLFA 60
           MA+IS++LSP NL+H   KP +        +L    F   ++ T +++ L+P    R+ A
Sbjct: 1   MATISSLLSPPNLLHHHTKPIKAAPKLSLQILKPTQFQGFQKLTSSYMILTPRHSQRVSA 60

Query: 61  AL--TAQDSSSVAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFAF 120
                A D SS A R++Y+GNIPR VDN EL +IVEEHGAVEKAEVM+DKYSGRSRRFAF
Sbjct: 61  VAEEVAADPSSKAARRVYIGNIPRTVDNAELTKIVEEHGAVEKAEVMFDKYSGRSRRFAF 120

Query: 121 VTMKTVDDANAAIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYV 180
           VT KTV+DAN+ +EKLN T++GGR IKVNITEKP++   D+SLL+AEESQFIDSPHKVYV
Sbjct: 121 VTAKTVEDANSIVEKLNGTEIGGREIKVNITEKPLLQA-DVSLLQAEESQFIDSPHKVYV 180

Query: 181 GNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNA 240
           GN+   V+T+TLK  FSEKGKVLSAKVSRVPGTSK+SG+GFV+FSSEE+VEAAISSFNN 
Sbjct: 181 GNLGKEVTTDTLKTLFSEKGKVLSAKVSRVPGTSKSSGFGFVSFSSEEDVEAAISSFNNT 240

Query: 241 LLEGQPIRVNKA 242
           L EGQ IRVNKA
Sbjct: 241 LFEGQRIRVNKA 251

[Close]

BLAST of Cp4.1LG17g08190 vs. TrEMBL
Match: A0A068UHQ5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00025069001 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 1.4e-76
Identity = 160/222 (72.07%), Postives = 179/222 (80.63%), Query Frame = 1


Query: 20  PAEILLTSVSFHRRRTHTFLRLSPGRPTRLFAALTAQDSSSVAERKLYVGNIPRNVDNEE 79
           P +    S    R +  T L       T   +  TA D SS A R+LYVGNIPR V N+E
Sbjct: 40  PLKFTFHSPQTTREQQPTRLNAVAEEETETASVATAADPSSEAARRLYVGNIPRTVTNDE 99

Query: 80  LKRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAAIEKLNETDVGGRTIKVNI 139
           LKRIVEEHGAVEKAEVMYDK+SGRSRRFAFVTMKTV+DANAAI KLNET++GGR IKVNI
Sbjct: 100 LKRIVEEHGAVEKAEVMYDKWSGRSRRFAFVTMKTVEDANAAIVKLNETEIGGRKIKVNI 159

Query: 140 TEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRV 199
           TEKP+  T+D SLL+AEESQFIDSPHKVYVGN++  V+T+ LKN F+EKGKVLSAKVSRV
Sbjct: 160 TEKPL-QTLDSSLLQAEESQFIDSPHKVYVGNLAKDVTTDKLKNLFAEKGKVLSAKVSRV 219

Query: 200 PGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA 242
           PGTSK+SGYGFVTFSSEEEVEAAISS NN +LEGQ IRVNKA
Sbjct: 220 PGTSKSSGYGFVTFSSEEEVEAAISSLNNEILEGQRIRVNKA 260

[Close]

BLAST of Cp4.1LG17g08190 vs. TrEMBL
Match: D7T2W3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0064g01430 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 3.1e-76
Identity = 171/255 (67.06%), Postives = 202/255 (79.22%), Query Frame = 1


Query: 1   MASISAVLSPTNLIHS----------SIKPAEILLTSVSFHRRRTHTFLRLSPGRPTRLF 60
           MA+IS++ S T L H           SI+P +       FH   + TF  + P RP  + 
Sbjct: 1   MAAISSLFSQTLLHHPTKTLTLHSKPSIQPLK------PFHFLNSVTFKAIKPKRPIAV- 60

Query: 61  AALTAQD---SSSVAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRF 120
           +A+TA+    +S VA R+LYVGNIPR +D+ EL RIVEEHGAVEKAEVMYDKYSGRSRRF
Sbjct: 61  SAVTAEAPVATSDVAARRLYVGNIPRTLDSAELARIVEEHGAVEKAEVMYDKYSGRSRRF 120

Query: 121 AFVTMKTVDDANAAIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKV 180
           AFVTMKTV+DANAAIEKLN T++GGR IKVNITEKP++ T+DMSLL+AEESQFIDSPHKV
Sbjct: 121 AFVTMKTVEDANAAIEKLNGTEIGGREIKVNITEKPLL-TLDMSLLQAEESQFIDSPHKV 180

Query: 181 YVGNISSTVSTETLKNFFSEK-GKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSF 240
           YVGN++ TV+T+TL  FFSEK GKVLSAKVSRVPGTSK+SG+GFV+FSSEE+VEAAISS 
Sbjct: 181 YVGNLARTVTTDTLTQFFSEKGGKVLSAKVSRVPGTSKSSGFGFVSFSSEEDVEAAISSC 240

Query: 241 NNALLEGQPIRVNKA 242
           NNA L+GQ IRVNKA
Sbjct: 241 NNAFLDGQRIRVNKA 247

[Close]

BLAST of Cp4.1LG17g08190 vs. TAIR10
Match: AT3G52150.1 (AT3G52150.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 261.9 bits (668), Expect = 3.8e-70
Identity = 130/187 (69.52%), Postives = 161/187 (86.10%), Query Frame = 1


Query: 55  AQDSSSVAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKT 114
           A D SS A R++Y+GNIPR V NE+L ++VEEHGAVEK +VMYDKYSGRSRRF F TMK+
Sbjct: 67  ALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKS 126

Query: 115 VDDANAAIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISS 174
           V+DANA +EKLN   V GR IKVNITEKP+ ++ D+S+L++E+S F+DSP+KVYVGN++ 
Sbjct: 127 VEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAK 186

Query: 175 TVSTETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQ 234
           TV+ E L+N FSEKGKV+SAKVSRVPGTSK++G+GFVTFSSEE+VEAAI + NN+LLEGQ
Sbjct: 187 TVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQ 246

Query: 235 PIRVNKA 242
            IRVNKA
Sbjct: 247 KIRVNKA 253

[Close]

BLAST of Cp4.1LG17g08190 vs. TAIR10
Match: AT3G52380.1 (AT3G52380.1 chloroplast RNA-binding protein 33)

HSP 1 Score: 138.7 bits (348), Expect = 4.9e-33
Identity = 71/185 (38.38%), Postives = 116/185 (62.70%), Query Frame = 1


Query: 59  SSVAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDA 118
           +S  E +LYVGN+P  + + EL +I  E G V   +++YDK + RSR F FVTM ++++A
Sbjct: 111 ASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEA 170

Query: 119 NAAIEKLNETDVGGRTIKVNITEKP--VVNTVDMSLLEAEESQFIDSPHKVYVGNISSTV 178
             A++  N + +GGRT+KVN  E P    N V  + +      ++DSPHKVY GN+   +
Sbjct: 171 KEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNL 230

Query: 179 STETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPI 238
           +++ LK+ F ++  VL AKV     T ++ G+GF++F S E V++A+++ N   +EG+ +
Sbjct: 231 TSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRAL 290

Query: 239 RVNKA 242
           R+N A
Sbjct: 291 RLNLA 295

[Close]

BLAST of Cp4.1LG17g08190 vs. TAIR10
Match: AT1G60000.1 (AT1G60000.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 135.6 bits (340), Expect = 4.1e-32
Identity = 76/185 (41.08%), Postives = 114/185 (61.62%), Query Frame = 1


Query: 57  DSSSVAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVD 116
           D  +    KLY GN+P NVD+  L +I+++    E  EV+Y++ +G+SR FAFVTM  V+
Sbjct: 78  DPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVE 137

Query: 117 DANAAIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTV 176
           D N  I+ L+ T+  GR +KVN  +KP  N         +E  + ++ HK++VGN+S TV
Sbjct: 138 DCNIIIDNLDGTEYLGRALKVNFADKPKPN---------KEPLYPETEHKLFVGNLSWTV 197

Query: 177 STETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPI 236
           ++E+L   F E G V+ A+V     T ++ GYGFV +SS+ E+E A+ S +   LEG+ I
Sbjct: 198 TSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAI 253

Query: 237 RVNKA 242
           RVN A
Sbjct: 258 RVNLA 253

[Close]

BLAST of Cp4.1LG17g08190 vs. TAIR10
Match: AT2G37220.1 (AT2G37220.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 126.3 bits (316), Expect = 2.5e-29
Identity = 77/200 (38.50%), Postives = 116/200 (58.00%), Query Frame = 1


Query: 56  QDSSSVAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTV 115
           ++ S  A+ KL+VGN+P NVD+ +L ++ E  G VE  EV+YDK +GRSR F FVTM +V
Sbjct: 83  KEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSV 142

Query: 116 DDANAAIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQF--------------I 175
            +  AA ++ N  ++ GR ++VN    P       S      S F               
Sbjct: 143 SEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFS--RGPRSSFGSSGSGYGGGGGSGA 202

Query: 176 DSPHKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEA 235
            S ++VYVGN+S  V    L++ FSE+GKV+ A+V     + ++ G+GFVT+ S +EV+ 
Sbjct: 203 GSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQN 262

Query: 236 AISSFNNALLEGQPIRVNKA 242
           AI S + A L+G+ IRV++A
Sbjct: 263 AIKSLDGADLDGRQIRVSEA 280

[Close]

BLAST of Cp4.1LG17g08190 vs. TAIR10
Match: AT5G50250.1 (AT5G50250.1 chloroplast RNA-binding protein 31B)

HSP 1 Score: 122.1 bits (305), Expect = 4.7e-28
Identity = 69/179 (38.55%), Postives = 106/179 (59.22%), Query Frame = 1


Query: 63  ERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAAI 122
           E KL+VGN+P +VD++ L  + E+ G VE +EV+Y++ + +SR F FVTM TV++A  A+
Sbjct: 112 EAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAV 171

Query: 123 EKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTETLK 182
           EK N  +V GR + VN                  + +  D+  ++YVGN+   V +  L+
Sbjct: 172 EKFNSFEVNGRRLTVN-------RAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLE 231

Query: 183 NFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA 242
             FSE GKV+ A+V     T ++ G+GFV  S+E EV  AI++ +   LEG+ I+VN A
Sbjct: 232 RLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVA 283

[Close]

BLAST of Cp4.1LG17g08190 vs. NCBI nr
Match: gi|659122659|ref|XP_008461258.1| (PREDICTED: 30S ribosomal protein 2, chloroplastic [Cucumis melo])

HSP 1 Score: 370.5 bits (950), Expect = 2.2e-99
Identity = 205/253 (81.03%), Postives = 222/253 (87.75%), Query Frame = 1


Query: 1   MASISAVLSPTNLIHSSIKPAEI-------LLTSVSFHRRRTHTFLRLSPGR---PTRLF 60
           MASIS++L+PTNLIH+S KP EI        L  +SFH    H  LR+SP     PTRLF
Sbjct: 1   MASISSILTPTNLIHTSKKPTEISQALSSQFLRPISFHP--PHILLRISPVAARPPTRLF 60

Query: 61  AALTA--QDSSSVAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFA 120
           A   A  Q +SSVAERKLY+GNIPRNV+NEEL RIV+EHGAVEKAEVMYDKYSGRSRRFA
Sbjct: 61  AVAEAATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFA 120

Query: 121 FVTMKTVDDANAAIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVY 180
           FVTMKTV+DANAAIEKLNET+VGGR IKVNITEKPVVNTVD+S+L+AEESQFIDSP+KVY
Sbjct: 121 FVTMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDLSILQAEESQFIDSPYKVY 180

Query: 181 VGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNN 240
           VGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSK+SGYGFVTFSSEEEVEAAISSFNN
Sbjct: 181 VGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNN 240

Query: 241 ALLEGQPIRVNKA 242
           ALLEGQPIRVNKA
Sbjct: 241 ALLEGQPIRVNKA 251

[Close]

BLAST of Cp4.1LG17g08190 vs. NCBI nr
Match: gi|449436259|ref|XP_004135910.1| (PREDICTED: 30S ribosomal protein 2, chloroplastic [Cucumis sativus])

HSP 1 Score: 369.4 bits (947), Expect = 4.8e-99
Identity = 204/253 (80.63%), Postives = 221/253 (87.35%), Query Frame = 1


Query: 1   MASISAVLSPTNLIHSSIKPAEI-------LLTSVSFHRRRTHTFLRLSPGR---PTRLF 60
           MASIS++L+PTNLIHSS KP +I        L  +SFH    H  LR+SP     PTRLF
Sbjct: 1   MASISSILTPTNLIHSSKKPTDIPQTLSSQFLRPISFHP--PHILLRISPVAAKPPTRLF 60

Query: 61  AA--LTAQDSSSVAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFA 120
           A   +  Q +SSVAERKLY+GNIPRNV+NEEL RIV+EHGAVEKAEVMYDKYSGRSRRFA
Sbjct: 61  AVAEVATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFA 120

Query: 121 FVTMKTVDDANAAIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVY 180
           FVTMKTV+DANAAIEKLNET+VGGR IKVNITEKPVVNTVDMS L+AEESQFIDSP+KVY
Sbjct: 121 FVTMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDMSFLQAEESQFIDSPYKVY 180

Query: 181 VGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNN 240
           VGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSK+SGYGFVTFSSEEEV+AAISSFNN
Sbjct: 181 VGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAISSFNN 240

Query: 241 ALLEGQPIRVNKA 242
           ALLEGQPIRVNKA
Sbjct: 241 ALLEGQPIRVNKA 251

[Close]

BLAST of Cp4.1LG17g08190 vs. NCBI nr
Match: gi|700189926|gb|KGN45159.1| (hypothetical protein Csa_7G428960 [Cucumis sativus])

HSP 1 Score: 345.1 bits (884), Expect = 9.7e-92
Identity = 191/237 (80.59%), Postives = 205/237 (86.50%), Query Frame = 1


Query: 17  SIKPAEI-------LLTSVSFHRRRTHTFLRLSPGR---PTRLFAA--LTAQDSSSVAER 76
           S KP +I        L  +SFH    H  LR+SP     PTRLFA   +  Q +SSVAER
Sbjct: 31  SKKPTDIPQTLSSQFLRPISFHP--PHILLRISPVAAKPPTRLFAVAEVATQGASSVAER 90

Query: 77  KLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAAIEK 136
           KLY+GNIPRNV+NEEL RIV+EHGAVEKAEVMYDKYSGRSRRFAFVTMKTV+DANAAIEK
Sbjct: 91  KLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAIEK 150

Query: 137 LNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTETLKNF 196
           LNET+VGGR IKVNITEKPVVNTVDMS L+AEESQFIDSP+KVYVGNISSTVSTETLKNF
Sbjct: 151 LNETEVGGRKIKVNITEKPVVNTVDMSFLQAEESQFIDSPYKVYVGNISSTVSTETLKNF 210

Query: 197 FSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA 242
           FSEKGKVLSAKVSRVPGTSK+SGYGFVTFSSEEEV+AAISSFNNALLEGQPIRVNKA
Sbjct: 211 FSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAISSFNNALLEGQPIRVNKA 265

[Close]

BLAST of Cp4.1LG17g08190 vs. NCBI nr
Match: gi|1009106197|ref|XP_015873244.1| (PREDICTED: 30S ribosomal protein 2, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 305.8 bits (782), Expect = 6.5e-80
Identity = 173/255 (67.84%), Postives = 202/255 (79.22%), Query Frame = 1


Query: 1   MASISAVLSPTNLIHSSIKPAEILLT--SVSFH----------RRRTHTFLRLSPGRPTR 60
           MA IS++LSP  LI   IK  +   +   +SFH           + T  +L LSP    R
Sbjct: 1   MAVISSLLSPHTLIFHPIKSNQTPPSPPKISFHFLNPTPFQVLPKLTSNYLVLSPRESHR 60

Query: 61  LFAAL--TAQDSSSVAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRR 120
           LFA     + D SS A ++LYVGNIPRN++NEEL +I  EHGAVEKAEVMYDKYSGRSRR
Sbjct: 61  LFAVAEDVSADPSSEAAKRLYVGNIPRNINNEELTKIFGEHGAVEKAEVMYDKYSGRSRR 120

Query: 121 FAFVTMKTVDDANAAIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHK 180
           FAFVTMKTV+DANAAIEKLN T++GGR IKVNITEKP+   VD+SLL+AEESQFIDSPHK
Sbjct: 121 FAFVTMKTVEDANAAIEKLNGTEIGGREIKVNITEKPLTR-VDLSLLQAEESQFIDSPHK 180

Query: 181 VYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSF 240
           VYVGN++ TV+T+TLKNFFSEKG VLSAKVSR+PGTSK+SG+GFV+FSSEE+VEAAISSF
Sbjct: 181 VYVGNLAKTVTTDTLKNFFSEKGNVLSAKVSRLPGTSKSSGFGFVSFSSEEDVEAAISSF 240

Query: 241 NNALLEGQPIRVNKA 242
           NN+LLEGQ IRVNKA
Sbjct: 241 NNSLLEGQKIRVNKA 254

[Close]

BLAST of Cp4.1LG17g08190 vs. NCBI nr
Match: gi|657966879|ref|XP_008375142.1| (PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Malus domestica])

HSP 1 Score: 301.2 bits (770), Expect = 1.6e-78
Identity = 163/252 (64.68%), Postives = 197/252 (78.17%), Query Frame = 1


Query: 1   MASISAVLSPTNLIHSSIKPAEI-------LLTSVSF--HRRRTHTFLRLSPGRPTRLFA 60
           MA+IS++ SP NL+H S KP +        +L    F  + + T ++L L+P    RLFA
Sbjct: 1   MATISSIFSPPNLLHQSTKPIKTSPKLPLQILKPTQFQGYHKLTSSYLTLTPRHSQRLFA 60

Query: 61  AL--TAQDSSSVAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFAF 120
                A D +S A R++Y+GNIPR VDN EL +IVEEHGAVEKAEVMYDKYSGRSRRFAF
Sbjct: 61  VAEEVAADPASKAARRVYIGNIPRTVDNAELTKIVEEHGAVEKAEVMYDKYSGRSRRFAF 120

Query: 121 VTMKTVDDANAAIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYV 180
            TM TV+DANA +EKLN T++GGR +KVNITEKP++   D SL++AEESQFIDSPHKVYV
Sbjct: 121 ATMTTVEDANAVVEKLNGTEIGGREVKVNITEKPLLQA-DSSLVQAEESQFIDSPHKVYV 180

Query: 181 GNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNA 240
           GN++  V+T+TLK  FS+KGKVLSAKVSRVPGTSK+SG+GFV+FSSEE+VEAAISSFNN 
Sbjct: 181 GNLAKEVTTDTLKTLFSDKGKVLSAKVSRVPGTSKSSGFGFVSFSSEEDVEAAISSFNNT 240

Query: 241 LLEGQPIRVNKA 242
           L EGQ IRVNKA
Sbjct: 241 LFEGQRIRVNKA 251

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g08190 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RRP2_SPIOL	1.5e-68	67.54	30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1	[more]
CP33_ARATH	8.6e-32	38.38	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana GN=CP33 PE=2 SV=...	[more]
ROC5_NICSY	1.1e-31	39.57	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1	[more]
ROC1_SPIOL	4.4e-28	42.46	28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1	[more]
CP29B_ARATH	4.4e-28	38.50	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana GN=CP29B PE=1 S...	[more]

BLAST of Cp4.1LG17g08190 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8E7_CUCSA	6.8e-92	80.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G428960 PE=4 SV=1	[more]
A0A067L6U8_JATCU	1.2e-77	65.63	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04908 PE=4 SV=1	[more]
M5X3H8_PRUPE	3.6e-77	64.68	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010401mg PE=4 SV=1	[more]
A0A068UHQ5_COFCA	1.4e-76	72.07	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00025069001 PE=4 SV=1	[more]
D7T2W3_VITVI	3.1e-76	67.06	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0064g01430 PE=4 SV=...	[more]

BLAST of Cp4.1LG17g08190 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G52150.1	3.8e-70	69.52	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52380.1	4.9e-33	38.38	chloroplast RNA-binding protein 33	[more]
AT1G60000.1	4.1e-32	41.08	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37220.1	2.5e-29	38.50	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G50250.1	4.7e-28	38.55	chloroplast RNA-binding protein 31B	[more]

BLAST of Cp4.1LG17g08190 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659122659\|ref\|XP_008461258.1\|	2.2e-99	81.03	PREDICTED: 30S ribosomal protein 2, chloroplastic [Cucumis melo]	[more]
gi\|449436259\|ref\|XP_004135910.1\|	4.8e-99	80.63	PREDICTED: 30S ribosomal protein 2, chloroplastic [Cucumis sativus]	[more]
gi\|700189926\|gb\|KGN45159.1\|	9.7e-92	80.59	hypothetical protein Csa_7G428960 [Cucumis sativus]	[more]
gi\|1009106197\|ref\|XP_015873244.1\|	6.5e-80	67.84	PREDICTED: 30S ribosomal protein 2, chloroplastic [Ziziphus jujuba]	[more]
gi\|657966879\|ref\|XP_008375142.1\|	1.6e-78	64.68	PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR003954	RRM_dom_euk
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0045036	protein targeting to chloroplast
biological_process	GO:0008150	biological_process
biological_process	GO:0044710	single-organism metabolic process
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0044237	cellular metabolic process
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0044434	chloroplast part
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g08190.1	Cp4.1LG17g08190.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 66..136 score: 7.2E-21coord: 167..237 score: 2.5
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 166..239 score: 5.9E-22coord: 65..138 score: 6.4
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 64..142 score: 18.683coord: 165..241 score: 18
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 166..239 score: 0.11coord: 65..138 score:
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 156..241 score: 3.2E-23coord: 56..141 score: 1.4
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 160..241 score: 2.82E-23coord: 54..142 score: 1.07
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 63..144 score: 5.0E-45coord: 164..241 score: 5.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG17g08190	Cucsa.050070	Cucumber (Gy14) v1	cgycpeB0048
Cp4.1LG17g08190	CmaCh17G009360	Cucurbita maxima (Rimu)	cmacpeB376
Cp4.1LG17g08190	CmaCh08G005490	Cucurbita maxima (Rimu)	cmacpeB917
Cp4.1LG17g08190	CmoCh08G005400	Cucurbita moschata (Rifu)	cmocpeB853
Cp4.1LG17g08190	CmoCh17G009110	Cucurbita moschata (Rifu)	cmocpeB339
Cp4.1LG17g08190	Cla015269	Watermelon (97103) v1	cpewmB312
Cp4.1LG17g08190	Csa7G428960	Cucumber (Chinese Long) v2	cpecuB343
Cp4.1LG17g08190	MELO3C023523	Melon (DHL92) v3.5.1	cpemeB299
Cp4.1LG17g08190	ClCG09G003870	Watermelon (Charleston Gray)	cpewcgB280
Cp4.1LG17g08190	CSPI07G19530	Wild cucumber (PI 183967)	cpecpiB344
Cp4.1LG17g08190	Lsi02G026020	Bottle gourd (USVL1VR-Ls)	cpelsiB262
Cp4.1LG17g08190	MELO3C023523.2	Melon (DHL92) v3.6.1	cpemedB347
Cp4.1LG17g08190	CsaV3_7G031350	Cucumber (Chinese Long) v3	cpecucB0422
Cp4.1LG17g08190	Bhi09G000501	Wax gourd	cpewgoB0414
Cp4.1LG17g08190	CsGy7G017850	Cucumber (Gy14) v2	cgybcpeB931
Cp4.1LG17g08190	Carg13463	Silver-seed gourd	carcpeB0632
Cp4.1LG17g08190	Carg18695	Silver-seed gourd	carcpeB0494

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG17g08190	Cp4.1LG12g06880	Cucurbita pepo (Zucchini)	cpecpeB157

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG17g08190	Cucumber (Chinese Long) v3	cpecucB0373
Cp4.1LG17g08190	Cucumber (Chinese Long) v3	cpecucB0392
Cp4.1LG17g08190	Wax gourd	cpewgoB0413
Cp4.1LG17g08190	Cucurbita pepo (Zucchini)	cpecpeB286
Cp4.1LG17g08190	Cucurbita pepo (Zucchini)	cpecpeB328
Cp4.1LG17g08190	Cucurbita pepo (Zucchini)	cpecpeB332
Cp4.1LG17g08190	Cucurbita pepo (Zucchini)	cpecpeB336
Cp4.1LG17g08190	Cucurbita pepo (Zucchini)	cpecpeB341
Cp4.1LG17g08190	Cucurbita maxima (Rimu)	cmacpeB269
Cp4.1LG17g08190	Cucurbita maxima (Rimu)	cmacpeB472
Cp4.1LG17g08190	Cucurbita maxima (Rimu)	cmacpeB566
Cp4.1LG17g08190	Cucurbita moschata (Rifu)	cmocpeB232
Cp4.1LG17g08190	Cucurbita moschata (Rifu)	cmocpeB430
Cp4.1LG17g08190	Cucurbita moschata (Rifu)	cmocpeB518
Cp4.1LG17g08190	Wild cucumber (PI 183967)	cpecpiB313
Cp4.1LG17g08190	Cucumber (Chinese Long) v2	cpecuB311
Cp4.1LG17g08190	Bottle gourd (USVL1VR-Ls)	cpelsiB266
Cp4.1LG17g08190	Watermelon (Charleston Gray)	cpewcgB290
Cp4.1LG17g08190	Watermelon (97103) v1	cpewmB333
Cp4.1LG17g08190	Melon (DHL92) v3.5.1	cpemeB308
Cp4.1LG17g08190	Cucumber (Gy14) v2	cgybcpeB038
Cp4.1LG17g08190	Cucumber (Gy14) v2	cgybcpeB356
Cp4.1LG17g08190	Melon (DHL92) v3.6.1	cpemedB366
Cp4.1LG17g08190	Silver-seed gourd	carcpeB0734
Cp4.1LG17g08190	Silver-seed gourd	carcpeB1145
Cp4.1LG17g08190	Silver-seed gourd	carcpeB1275