Cp4.1LG11g09550 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG11g09550
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPhotosystem II reaction center PsbP family protein
LocationCp4.1LG11 : 8057972 .. 8063328 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCCTTCTTCTTTCTTTATGCCTCCACCCTCCAAACCTTCAGCAAAACCCCACCGCCGCCGTCCCCCACCCGACCACCGTCGGATTTCACGAGCCTACATCGCTGAATTCCAATTCCAAGAGACATTTCATCCTCAAAACAGCTTCACTCTGTCTAATTTCATTGATTCCAAAATGCCCAGTTGCCCAATCTTCCCAAATTTCGCCTACTTCGAAACAAGGCCTTCCTGGCCTTGCAAATACAAAGTCTTGGTTTCAGTTTTATGGTGATGGGTTCTCCATTCGTGTGCCGCCTCAGTTTGAAGACCTCACGGAGCCTGAGGTATGAACAAAATACCTCACTGATTTCTGTTTGTTTAATCGTGGTGTTGTGTGTGTTACCTCTGCTTCCACCAATATGAATAGTTTAAGGTTATTTACGCTTCATATTTGTTTGGAAACACACATGTTTAGTTGCTGTTAATGTCAATGGCATTAAGCAGAAGGCTCCAGCTTCAGGGCTTTGAGAATACCCCTTAATGTTTTGATTGGGAATTCTAACCTCAAGCTTTAGAATTATTATTGGCGTTGCTAGGTGGGGTTGAGAGACAGAGTCAGATTTTGGGGTTCTTCGATTGTGAGATCCTAGAATGGTTGGAGAAGAGAACGAAACATTTCTTATAATAGTGTGGAAACCTCTCCATAGCAGACGCGTTTTAAAACCTTGAGGGGAAACCCGACGGAAAAGCCCAAAGAGGAAAATATCCGCTAGTGGTGGGCTTGGTACTGGGCGGTGTGCCAGTGAGGACGTTGGTCCCTAAGGGGGTGGATTGTGAGATTCCACATCAGTTGGAGAGGAGAACGAAGTATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGCATACGTGTTTTAAAACCTTGAGGGGAAACCTAAAGGGAAAGTCAAAAAGGACAATATCTACTAGCGGTGGGCTTGGTAGCGGGTGGTGTACCAGTGAGGACGTTGGTCCCCAAGGAGGGTGGACTGTGAGATTCCACATCGGTTGGAGAGGAGAATGAAGCATTTCTTATAAGGGTGTAGAAACCTCTCCATAGTAGATGCGTTTTAAAACCTTAAGAGGAAACCTGAAGGGAAAGCTCAAAGAGGACAATACTGGTATATGGACAACTGTGTGGACCGATGGGCTTAATCTACTAGCGGTGTGCCAATGGGGATGTTGTGCCCCAAGNTAGATGCGTTTTAAAACCTTAAGAGGAAACCTGAAGGGAAAGCCCAAAGAGGACAATACTGGTATATGGACAACTGTGTGGACCGATGGGCTTAATCTGCTAGCGGTGTGCCAATGGGGATGTTGTGCCCCAAGGGGGGTGGATTGTGAGATCCCACATCGATTGGAGAGGAGAACGAAGCAATACTTATAAGGGTGTAGAAACCTCATCCTAGCAAACGCGTTATAAACCTCGAGGGGAAACCTAAAGGGAAAACCCAAATAGGACAATATCTGCTAGTGGTGGGCTTGGGACCGGGCAGTGTGCCAGCAAGGACGTTGGGCCCTTAAGAGAGGTGGATTGTGAGATCCCAANCCTCGAGGGGAAACCTAAAGGGAAAACCCAAATAGGACAATATTTGCTAGTGGTGGGCTTGGGACCGGGTAGTGTGCCAGCGAGGACGTTGGGCTCTTAAGAGAGGTGGATTGTGAGATCCCAAATTGGTTGGAGAGGAGAACGAATCATTCCTTATAAGGGTGTGGAAACTTCTCCTCAATAGACGCATTTTAAAACCGTGAGGTTGACGGGGATACGTAGCGGGCCAAAGCANTATAAGGGTGTAGAAACCTCTCCCTAGCAGACACGTTTTAAAACCTCGAGGGGAAACTCGAAGGGAAAGCCCAAAAAGGACAATATCTCCAGCGGTGGGCTTGGGTTGAATTTTTTCTTGATTTTATTAGTGTATTCCACACAAGAGCTTGATGTGATCTTCATGTAAAGAAACAACAGCTACTAATTAGACTATATCTTTGTTCAACTCCTCTCCTACCTTTAGGCATTCTTATAACCATTCCCTTATGCTCGGTAGCTGTGGCCTTTTCTTGTACTTGTAAAAGGCTTATCATTTGCAGCTCGCTAAGTTATGTGCTTGGGGCTTGTAGGATTTCAATGCTGGACTATCTCTTTATGGAGATAAGGTAAAAACGAAAACGTTCGCAGCTCGGTTTGGATCTCCTGATGGGTAATGATATTTCTCTTCGTTCATATTGTTTGCTTTATGTATTTGGCTTATATTCATTCTGCTTTGTTCGTTAACACAGCTCTGAAGTTCTAAGCGTTGTCACTCGTCCAACGAATCAACTTAAGATCACCTTTCTAGAGGTAGCACAATGATGGCTGTGAAGTTTTCATTTGGTAATTCTAAAGAGCATCAATTTCTTACTAAACAGTTCATATCTAGCAAACCGTTTCTAAGCTCGGTGGCTCTTTCGTACTAAGAAGCTCTACCTAGAGAAAATCTCCATCAAATCTTAAACTGTTAAGTCATGTTTTGGAGCTTTTAAGCCCAAGATTGTTTGCTTACTGTTAACTCTGAGCTTCCCAAAGAGGTTTTTGAAGTTTCTAGTCACAAACTTCGATAAAAAGATTCTGTTTTAGTTCTACATACGTGCTTATTGAGTTATGTTCGTGTTTTATGGATAACGGTTTTAGGAGCTTCCGTTTTTTCTTGCGAAAAACAGGCGAAAGATATAACTGATATAGGTTCCTTGAGGGAGGCTGCAAAAATCTTTGTTCCAGGTACACATTTTGTGTTCAATATGCTAAGTAACTTTTTTGTGGTCATTTGGCTGCACATTTCATTCTAGCTATTGGGTTTGGTGTTCTTACAATGATAGGTGGTGCAACGTTATTTTCAGCCCGAACGTTTAAAATTAAGGACGATGAAGGTTTCAGGTAACTATGCTACCAAGGTGTCCTTGGCTCGTTAGATTTGTTTTTATCTTTTCGAGATTTGATTAAGATAAATGAAACAATAGAATTGGATAACACAAAATGAAGAAAAGCCCACTTTAGAAAGAGCTTGTAGAAAGAAAGTCGACTCAAGATTACGAAAATGGCTGTGGTTGTTGAGAAGAAGAGGCAAAGGCTAGTTATAGAAATCCTTAGAAATCAAAACTCTAGAAAGGAAGGAACCTAACCATAGAGCATGCCTCTCAAAGGGCTCACGAGCTATCTAAAGTGCGGATCGATTGTTCCACAAAATAGGTAGGAAGTGTCGGTACACCAAAGAGTCCATCATTGAGCGATAGATTGAATGAGTTCAAGCTATGGTAGCCATGTACCGGAGGTTTATTGTAAATACCCAGATCCACCGCTAGCAGATATTGTCCTCTTTGGGCTTTCCCTTTCAGGCTTTAAAACGCGTCTGCTAAGGGAAGATTTCCACACTCTTATAACGGGTGGTTTGTTCTCCTGTCCAACCAATGTGGGACATCACAATCCACCCCCCTTCGGGGCCCAGCGTCTTCGCTGGCACTCTTTTCTTCCTCCAATCGATGTGGAACCGCCCCCAAATCCACCTCCCTTTGGGGCCCAGCGTCCTTACTAGCACACAGCCTCGGGGAACAGCGAGAAGGCTGGCACATCGTCCGGTGTCTGGCTCTGATACCATTTGTAACGACCCAGATCCACCGCTAGCAGATATTGTTCTCTTTGGGCTTTCCCTTTCGGGCTCGCCCTCAAGGCTTTAAAACGCATCTGCTAGGGGAAGGTTTCCACACCTTTTTAAATGGTGGTTTGTTCTCCTCTCCAACCAATGTGGGACATCACATTTATATTTTACGAGTTTTCTTGGCAACCAAGTATGATAAGGTTAGACAACCGTCTTAAGGTTTAGATGGAATGAGTTCAAGCTATCGTAGCCATGTACCTGCGGTTTATATTCTACGAGTTTTCTTGGCAACCAAGTATGATAGGGTTAGACAGTTGTTGAAGTTAGTGGATCCTAACTCACACTCAAGAACATAAACAATGCTATGAAATAATAATCTAGATCTAGTCTTCTTTGCCTATATAAGCTTTCATATTTCCATTTGATTACCTCTGTTTCGTTAAATTCAGGACGTATTACTTCTACGAGTTTGGGAAGAACGAAGAACACGTCGCGTTAGTAGCAACTGTTAATAGTGGACAGGTTTGTGATATACAATTTACCTTACATACTAAACTTCTTACTCTGATGAAGACGTGAGTTTGAGCCCTTTGACTTGCTTTATGACATTTGGATGAAGTTGTAAAATGGTAGAACTTGTATGAATAAGAGTTGATTCAAAGTTAAATTGTTCATGCCAGTAAATTCTTATTAATTGGTATGTGAATATGGCAAACATAACTTTAAAATTTTGAGTTCTGTCTGGCTATGAGATTCCATATCGGTTGGAGAGGGAACAGAGCACTTTTTATAAGAGTGTGGAAACCTCCCCCTAGAAGACGTGTTTTAAAACCTTGAGGGAAGCCCAGAAGGAAAAGCCCAAAGAGGACAATATCGGCTAGTGGTGGGCTTGGGCTATTACAAATGGTATCAGAACCAGAGACCGAACGGTGTGCCAATGAGGACGTTGGGCTCCCAAAGGGGGTGGATTGTGAGATCCCACATCGATTGGAGAGAGGAACAAAGCATTTCTTATAAGGGTGTGGAAACCTCTCTCTAGAAGACGCGTTTTAAAACCTTGAGGGGAAGCCCAGAAGGGAAATCCCAAAGAGGACAATATCGGCTAGTGGTGGGCTTGGGCTATTACAAATGGTATCAGAGCCAGATGCCGAGTGGTGTGCCAGCGAGGACGATGGGCTCCCAAGGGGGTGGATTGTGAGATTCCACATCGGTTGGAGAGGGGAAAGAAGCATTTCTTATAAAGGTGTGGAAACCTCTCCATAGAAAATGCGTTTTAAAACCTTGAAGGGAAGCCCAGAAGGGAAAGCTCAAAGAGACAATATCTGCTAGTGGTGAGCTTGGGCTGTTACAAATGGTATCAGAGCCAGACGCCGAGCGGTGTGCCAGTGAGAACGCTGTGCTTCCAAGGGGGGTGGATTGTGAGATCTCATATCGGTTGGAGAGGAGAACGAACCACTCCTTATAAGGGTGTGGAAACCTCTCCTCATTTTAAAACCTTGAGGGGAAGCCCAGAAGAAAAAACTCAAAGAGTACAATATCTGCTAGCGGTGGACTTGGGCTTGGGCTTGGACTGTTACAAACTCATCCAATTTGTCTTGACATAGCGTCTTCTTTGTCGTAGGCGTTTGTTGCCGGAGCAACCGCACCATTGTCCAAATGGGATGAAGATGGCATAAAACTCCGTTCTGCTGCTATATCTCTAACCGTACTATAA

mRNA sequence

ATGGCCCTTCTTCTTTCTTTATGCCTCCACCCTCCAAACCTTCAGCAAAACCCCACCGCCGCCGTCCCCCACCCGACCACCGTCGGATTTCACGAGCCTACATCGCTGAATTCCAATTCCAAGAGACATTTCATCCTCAAAACAGCTTCACTCTGTCTAATTTCATTGATTCCAAAATGCCCAGTTGCCCAATCTTCCCAAATTTCGCCTACTTCGAAACAAGGCCTTCCTGGCCTTGCAAATACAAAGTCTTGGTTTCAGTTTTATGGTGATGGGTTCTCCATTCGTGTGCCGCCTCAGTTTGAAGACCTCACGGAGCCTGAGGATTTCAATGCTGGACTATCTCTTTATGGAGATAAGGTAAAAACGAAAACGTTCGCAGCTCGGTTTGGATCTCCTGATGGCTCTGAAGTTCTAAGCGTTGTCACTCGTCCAACGAATCAACTTAAGATCACCTTTCTAGAGGCGAAAGATATAACTGATATAGGTTCCTTGAGGGAGGCTGCAAAAATCTTTGTTCCAGGTGGTGCAACGTTATTTTCAGCCCGAACGTTTAAAATTAAGGACGATGAAGGTTTCAGGACGTATTACTTCTACGAGTTTGGGAAGAACGAAGAACACGTCGCGTTAGTAGCAACTGTTAATAGTGGACAGGCGTTTGTTGCCGGAGCAACCGCACCATTGTCCAAATGGGATGAAGATGGCATAAAACTCCGTTCTGCTGCTATATCTCTAACCGTACTATAA

Coding sequence (CDS)

ATGGCCCTTCTTCTTTCTTTATGCCTCCACCCTCCAAACCTTCAGCAAAACCCCACCGCCGCCGTCCCCCACCCGACCACCGTCGGATTTCACGAGCCTACATCGCTGAATTCCAATTCCAAGAGACATTTCATCCTCAAAACAGCTTCACTCTGTCTAATTTCATTGATTCCAAAATGCCCAGTTGCCCAATCTTCCCAAATTTCGCCTACTTCGAAACAAGGCCTTCCTGGCCTTGCAAATACAAAGTCTTGGTTTCAGTTTTATGGTGATGGGTTCTCCATTCGTGTGCCGCCTCAGTTTGAAGACCTCACGGAGCCTGAGGATTTCAATGCTGGACTATCTCTTTATGGAGATAAGGTAAAAACGAAAACGTTCGCAGCTCGGTTTGGATCTCCTGATGGCTCTGAAGTTCTAAGCGTTGTCACTCGTCCAACGAATCAACTTAAGATCACCTTTCTAGAGGCGAAAGATATAACTGATATAGGTTCCTTGAGGGAGGCTGCAAAAATCTTTGTTCCAGGTGGTGCAACGTTATTTTCAGCCCGAACGTTTAAAATTAAGGACGATGAAGGTTTCAGGACGTATTACTTCTACGAGTTTGGGAAGAACGAAGAACACGTCGCGTTAGTAGCAACTGTTAATAGTGGACAGGCGTTTGTTGCCGGAGCAACCGCACCATTGTCCAAATGGGATGAAGATGGCATAAAACTCCGTTCTGCTGCTATATCTCTAACCGTACTATAA

Protein sequence

MALLLSLCLHPPNLQQNPTAAVPHPTTVGFHEPTSLNSNSKRHFILKTASLCLISLIPKCPVAQSSQISPTSKQGLPGLANTKSWFQFYGDGFSIRVPPQFEDLTEPEDFNAGLSLYGDKVKTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGGATLFSARTFKIKDDEGFRTYYFYEFGKNEEHVALVATVNSGQAFVAGATAPLSKWDEDGIKLRSAAISLTVL
Homology
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BLAST of Cp4.1LG11g09550 vs. TrEMBL
Match: A0A0A0LJH6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020900 PE=4 SV=1)

HSP 1 Score: 442.2 bits (1136), Expect = 4.2e-121
Identity = 221/249 (88.76%), Postives = 232/249 (93.17%), Query Frame = 1 

Query: 1   MALLLSLCLH-PPNLQQNPTAAVPHPTTVGFHEPTSLNSNSKRHFILKTASLCLISLIPK 60
           MA+ LSLC+H PPN  QNPT+ VP PTT+ F  PTSLNS SKRHFILKTASLCLIS IPK
Sbjct: 1   MAIPLSLCIHHPPNPHQNPTSPVPPPTTLCFPAPTSLNSKSKRHFILKTASLCLISFIPK 60

Query: 61  CPVAQSSQISPTSKQGLPGLANTKSWFQFYGDGFSIRVPPQFEDLTEPEDFNAGLSLYGD 120
           CPV QSS+ SPTSK GLP +ANTKSWFQFYGDGFSIRVPPQFEDLTEPED++AGLSLYGD
Sbjct: 61  CPVVQSSENSPTSKPGLPAIANTKSWFQFYGDGFSIRVPPQFEDLTEPEDYSAGLSLYGD 120

Query: 121 KVKTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGGATL 180
           K KTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGG+TL
Sbjct: 121 KAKTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGGSTL 180

Query: 181 FSARTFKIKDDEGFRTYYFYEFGKNEEHVALVATVNSGQAFVAGATAPLSKWDEDGIKLR 240
           FSARTFKIK+DEGFRTYYFYEFGKNE+HVALVATVNSGQ FVAGATAPLSKWDEDGIKLR
Sbjct: 181 FSARTFKIKEDEGFRTYYFYEFGKNEQHVALVATVNSGQVFVAGATAPLSKWDEDGIKLR 240

Query: 241 SAAISLTVL 249
           SAAISLTVL
Sbjct: 241 SAAISLTVL 249

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BLAST of Cp4.1LG11g09550 vs. TrEMBL
Match: A0A067JI42_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23385 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 5.3e-92
Identity = 178/249 (71.49%), Postives = 201/249 (80.72%), Query Frame = 1 

Query: 1   MALLLSLCLHPPNLQQNPTAAVPHPTTVGFHEPTSLNSNSKRHFILKTASLCLISLIPKC 60
           MA+L  L LHPP   QNP   + +      H  T LNS SKR F  KT SL +I L  + 
Sbjct: 1   MAILFFLSLHPPKPLQNPNTIIFNARK---HTCTFLNSVSKREFFFKTTSLGVIYLTTQN 60

Query: 61  PVAQS-SQISPTSKQGLPGLANTKSWFQFYGDGFSIRVPPQFEDLTEPEDFNAGLSLYGD 120
           P+AQS ++ S  SK  L G+ANTKSWFQFYGDGF+IRVPPQFED+ EPED+NAGLSLYGD
Sbjct: 61  PLAQSLAETSSPSKSVLSGIANTKSWFQFYGDGFAIRVPPQFEDIMEPEDYNAGLSLYGD 120

Query: 121 KVKTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGGATL 180
           K K KT+AARF SPDG EVLSVV RPTNQLKITFLEAKDITD+GSL+EAAKIFVPGG+TL
Sbjct: 121 KAKPKTYAARFASPDGYEVLSVVIRPTNQLKITFLEAKDITDLGSLKEAAKIFVPGGSTL 180

Query: 181 FSARTFKIKDDEGFRTYYFYEFGKNEEHVALVATVNSGQAFVAGATAPLSKWDEDGIKLR 240
           FSART KIK+DEGFRTYYFYEFG++E+H ALVA VNSG+A +AGATAP SKWD DG+KLR
Sbjct: 181 FSARTIKIKEDEGFRTYYFYEFGRDEQHAALVAAVNSGKAIIAGATAPQSKWDSDGVKLR 240

Query: 241 SAAISLTVL 249
           SAAISLTVL
Sbjct: 241 SAAISLTVL 246

[Close]
BLAST of Cp4.1LG11g09550 vs. TrEMBL
Match: B9I7Z3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s02750g PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 1.5e-89
Identity = 175/253 (69.17%), Postives = 204/253 (80.63%), Query Frame = 1 

Query: 1   MALLLSLCLH----PPNLQQNPTAAVPHPTTVGFHEPTSLNSNSKRHFILKTASLCLISL 60
           MA+LLSL  H    P N +QNP    P PT      P+++   SKR FI KT SLCLISL
Sbjct: 1   MAILLSLSPHHHHPPLNPRQNPNPYSPKPTPHATSLPSTI---SKRQFIFKTTSLCLISL 60

Query: 61  IPKCPVAQS-SQISPTSKQGLPGLANTKSWFQFYGDGFSIRVPPQFEDLTEPEDFNAGLS 120
             + P+AQ+ ++ SP  K  L  LANTKSWFQFYGDGF+IRVPPQFED+ EPED++AGLS
Sbjct: 61  ATQHPLAQALAEPSPPLKSVLSILANTKSWFQFYGDGFAIRVPPQFEDIMEPEDYSAGLS 120

Query: 121 LYGDKVKTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPG 180
           LYGDK K KTFAARF S DGSEVL+VV RP+NQLKITFLEAKDITD+GSL+EAAK+FVPG
Sbjct: 121 LYGDKAKPKTFAARFASSDGSEVLNVVVRPSNQLKITFLEAKDITDLGSLKEAAKLFVPG 180

Query: 181 GATLFSARTFKIKDDEGFRTYYFYEFGKNEEHVALVATVNSGQAFVAGATAPLSKWDEDG 240
           G TLFSART KIK++EG+RTYYFYEFG++++H ALVA VNSG+A +AGATAP SKWDEDG
Sbjct: 181 GTTLFSARTLKIKEEEGYRTYYFYEFGRDDQHAALVAVVNSGKAIIAGATAPQSKWDEDG 240

Query: 241 IKLRSAAISLTVL 249
           +KLRSA ISLTVL
Sbjct: 241 VKLRSAVISLTVL 250

[Close]
BLAST of Cp4.1LG11g09550 vs. TrEMBL
Match: A0A061F3E6_THECC (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein isoform 1 OS=Theobroma cacao GN=TCM_026613 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 1.2e-88
Identity = 172/251 (68.53%), Postives = 204/251 (81.27%), Query Frame = 1 

Query: 1   MALLLSLCLHPPNLQQNPTAAVPHPTTVGFHEPTSL--NSNSKRHFILKTASLCLISLIP 60
           MALLLSL LHPP   QNP     +P       PTS+    N +R FI+ + SLC+I   P
Sbjct: 9   MALLLSLSLHPPKPPQNPKLTSLNPPV-----PTSVLKTLNIRRQFIINSTSLCIILWAP 68

Query: 61  KCPVAQS-SQISPTSKQGLPGLANTKSWFQFYGDGFSIRVPPQFEDLTEPEDFNAGLSLY 120
           + PV QS ++ S TSK  L  +ANTKSWFQFYGDGF+IRVPP+FED+ EPEDFNAG SLY
Sbjct: 69  QNPVPQSLAEPSTTSKPAL-NIANTKSWFQFYGDGFAIRVPPEFEDIMEPEDFNAGASLY 128

Query: 121 GDKVKTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGGA 180
           GDK K +TFAARF S DGSEVLSVV R TNQLKITFLEA+DITD+GS++EAA+IFVPGGA
Sbjct: 129 GDKAKPRTFAARFASTDGSEVLSVVIRRTNQLKITFLEAQDITDLGSIKEAARIFVPGGA 188

Query: 181 TLFSARTFKIKDDEGFRTYYFYEFGKNEEHVALVATVNSGQAFVAGATAPLSKWDEDGIK 240
           TL++ART KIK+DEGF+TYYFYEFG++E+H+ALVATVNSG+A +AGATAP SKWD+DG+K
Sbjct: 189 TLYNARTIKIKEDEGFKTYYFYEFGRDEQHIALVATVNSGKAVIAGATAPQSKWDDDGVK 248

Query: 241 LRSAAISLTVL 249
           LRSAA+SLTVL
Sbjct: 249 LRSAALSLTVL 253

[Close]
BLAST of Cp4.1LG11g09550 vs. TrEMBL
Match: B9RF17_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1430460 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 2.3e-87
Identity = 172/250 (68.80%), Postives = 201/250 (80.40%), Query Frame = 1 

Query: 1   MALLLSLCLHPPNLQQNPTAAVPHPTTVGFHEPTSLNSN-SKRHFILKTASLCLISLIPK 60
           MA+L+SL    PN Q       P+PT         L SN SKR F+LKT SL +ISL  +
Sbjct: 1   MAILISLSFQNPN-QSIFNTLKPNPT---------LRSNVSKRQFLLKTTSLGVISLTTQ 60

Query: 61  CPVAQS-SQISPTSKQGLPGLANTKSWFQFYGDGFSIRVPPQFEDLTEPEDFNAGLSLYG 120
            P+ QS ++ S  SK GL G+ANTKSWFQFYGDGFSIRVPPQF+D+ EPEDFNAGLSLYG
Sbjct: 61  NPLIQSLAESSSPSKPGLSGIANTKSWFQFYGDGFSIRVPPQFQDIMEPEDFNAGLSLYG 120

Query: 121 DKVKTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGGAT 180
           DK K +TFAARF S DGSEVLSVV RP+NQLKITFLEAKDITD+GSL+EAAK+FVPGG+T
Sbjct: 121 DKAKPRTFAARFASSDGSEVLSVVIRPSNQLKITFLEAKDITDLGSLKEAAKVFVPGGST 180

Query: 181 LFSARTFKIKDDEGFRTYYFYEFGKNEEHVALVATVNSGQAFVAGATAPLSKWDEDGIKL 240
           L+SAR  K+K++EGFRTYYFYEFG+ E+HVALVA +NSG+A +AGATAP S+WD DG+KL
Sbjct: 181 LYSARAIKVKEEEGFRTYYFYEFGREEQHVALVAAINSGKAIIAGATAPQSRWDTDGVKL 240

Query: 241 RSAAISLTVL 249
           RSAAISLTVL
Sbjct: 241 RSAAISLTVL 240

[Close]
BLAST of Cp4.1LG11g09550 vs. TAIR10
Match: AT5G27390.1 (AT5G27390.1 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein)

HSP 1 Score: 288.5 bits (737), Expect = 3.9e-78
Identity = 150/253 (59.29%), Postives = 195/253 (77.08%), Query Frame = 1 

Query: 1   MALLL-SLCLHPPNLQ-QNPTAAVPHPTTVGFHEPTSLNSNS--KRHFILKTASLCLISL 60
           MA+LL SL LHPPN + QNP            ++P  L+S++  +R  +L+TASLC +S 
Sbjct: 1   MAILLHSLSLHPPNPKPQNP------------YKPKILSSSATFRRDVVLRTASLCFVSF 60

Query: 61  IPKCPVAQSSQISPTSKQGLP-GLANTKSWFQFYGDGFSIRVPPQFEDLTEPEDFNAGLS 120
           I +  + +S      S + L  G+ANTKSWFQ++G GF+IRVPP FED+ EPED++AGLS
Sbjct: 61  IFQNQIPESLADPLKSTKPLRLGIANTKSWFQYFGSGFAIRVPPDFEDVNEPEDYSAGLS 120

Query: 121 LYGDKVKTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPG 180
           LYGDK K +TFAARF +PDGSEVLSVV RP+NQLKITFLEAKDI+D+GSL+ AA++FVPG
Sbjct: 121 LYGDKAKPQTFAARFQTPDGSEVLSVVIRPSNQLKITFLEAKDISDLGSLKAAARLFVPG 180

Query: 181 GATLFSARTFKIKDDEGFRTYYFYEFGKNEEHVALVATVNSGQAFVAGATAPLSKWDEDG 240
            AT++SART K+K++EG R YYFYEFG++EE +ALVA+VN G+ ++AGA AP SKW +D 
Sbjct: 181 AATIYSARTIKVKEEEGLRNYYFYEFGRDEERIALVASVNRGKVYIAGAAAPESKWKDDE 240

Query: 241 IKLRSAAISLTVL 249
           +KLRSAAIS T+L
Sbjct: 241 LKLRSAAISFTIL 241

[Close]
BLAST of Cp4.1LG11g09550 vs. NCBI nr
Match: gi|449442861|ref|XP_004139199.1| (PREDICTED: uncharacterized protein LOC101214471 [Cucumis sativus])

HSP 1 Score: 442.2 bits (1136), Expect = 6.0e-121
Identity = 221/249 (88.76%), Postives = 232/249 (93.17%), Query Frame = 1 

Query: 1   MALLLSLCLH-PPNLQQNPTAAVPHPTTVGFHEPTSLNSNSKRHFILKTASLCLISLIPK 60
           MA+ LSLC+H PPN  QNPT+ VP PTT+ F  PTSLNS SKRHFILKTASLCLIS IPK
Sbjct: 1   MAIPLSLCIHHPPNPHQNPTSPVPPPTTLCFPAPTSLNSKSKRHFILKTASLCLISFIPK 60

Query: 61  CPVAQSSQISPTSKQGLPGLANTKSWFQFYGDGFSIRVPPQFEDLTEPEDFNAGLSLYGD 120
           CPV QSS+ SPTSK GLP +ANTKSWFQFYGDGFSIRVPPQFEDLTEPED++AGLSLYGD
Sbjct: 61  CPVVQSSENSPTSKPGLPAIANTKSWFQFYGDGFSIRVPPQFEDLTEPEDYSAGLSLYGD 120

Query: 121 KVKTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGGATL 180
           K KTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGG+TL
Sbjct: 121 KAKTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGGSTL 180

Query: 181 FSARTFKIKDDEGFRTYYFYEFGKNEEHVALVATVNSGQAFVAGATAPLSKWDEDGIKLR 240
           FSARTFKIK+DEGFRTYYFYEFGKNE+HVALVATVNSGQ FVAGATAPLSKWDEDGIKLR
Sbjct: 181 FSARTFKIKEDEGFRTYYFYEFGKNEQHVALVATVNSGQVFVAGATAPLSKWDEDGIKLR 240

Query: 241 SAAISLTVL 249
           SAAISLTVL
Sbjct: 241 SAAISLTVL 249

[Close]
BLAST of Cp4.1LG11g09550 vs. NCBI nr
Match: gi|659070438|ref|XP_008455075.1| (PREDICTED: uncharacterized protein LOC103495336 isoform X1 [Cucumis melo])

HSP 1 Score: 438.7 bits (1127), Expect = 6.6e-120
Identity = 220/249 (88.35%), Postives = 231/249 (92.77%), Query Frame = 1 

Query: 1   MALLLSLCLH-PPNLQQNPTAAVPHPTTVGFHEPTSLNSNSKRHFILKTASLCLISLIPK 60
           MA+ LSLCLH PPN  QNPT+AVP PTTV F   ++LNS SKRHFILKTASLCLIS  PK
Sbjct: 1   MAIPLSLCLHHPPNPHQNPTSAVPPPTTVCFPASSTLNSQSKRHFILKTASLCLISFFPK 60

Query: 61  CPVAQSSQISPTSKQGLPGLANTKSWFQFYGDGFSIRVPPQFEDLTEPEDFNAGLSLYGD 120
           CPV QSS+ SPTSK GLP +ANTKSWFQFYGDGFSIRVPPQFEDLTEPED++AGLSLYGD
Sbjct: 61  CPVVQSSENSPTSKPGLPAIANTKSWFQFYGDGFSIRVPPQFEDLTEPEDYSAGLSLYGD 120

Query: 121 KVKTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGGATL 180
           K KTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGG+TL
Sbjct: 121 KAKTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGGSTL 180

Query: 181 FSARTFKIKDDEGFRTYYFYEFGKNEEHVALVATVNSGQAFVAGATAPLSKWDEDGIKLR 240
           FSARTFKIK+DEGFRTYYFYEFGKNE+HVALVATVNSGQ FVAGATAPLSKWDEDGIKLR
Sbjct: 181 FSARTFKIKEDEGFRTYYFYEFGKNEQHVALVATVNSGQVFVAGATAPLSKWDEDGIKLR 240

Query: 241 SAAISLTVL 249
           SAAISLTVL
Sbjct: 241 SAAISLTVL 249

[Close]
BLAST of Cp4.1LG11g09550 vs. NCBI nr
Match: gi|802757066|ref|XP_012089111.1| (PREDICTED: uncharacterized protein LOC105647584 [Jatropha curcas])

HSP 1 Score: 345.5 bits (885), Expect = 7.7e-92
Identity = 178/249 (71.49%), Postives = 201/249 (80.72%), Query Frame = 1 

Query: 1   MALLLSLCLHPPNLQQNPTAAVPHPTTVGFHEPTSLNSNSKRHFILKTASLCLISLIPKC 60
           MA+L  L LHPP   QNP   + +      H  T LNS SKR F  KT SL +I L  + 
Sbjct: 1   MAILFFLSLHPPKPLQNPNTIIFNARK---HTCTFLNSVSKREFFFKTTSLGVIYLTTQN 60

Query: 61  PVAQS-SQISPTSKQGLPGLANTKSWFQFYGDGFSIRVPPQFEDLTEPEDFNAGLSLYGD 120
           P+AQS ++ S  SK  L G+ANTKSWFQFYGDGF+IRVPPQFED+ EPED+NAGLSLYGD
Sbjct: 61  PLAQSLAETSSPSKSVLSGIANTKSWFQFYGDGFAIRVPPQFEDIMEPEDYNAGLSLYGD 120

Query: 121 KVKTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGGATL 180
           K K KT+AARF SPDG EVLSVV RPTNQLKITFLEAKDITD+GSL+EAAKIFVPGG+TL
Sbjct: 121 KAKPKTYAARFASPDGYEVLSVVIRPTNQLKITFLEAKDITDLGSLKEAAKIFVPGGSTL 180

Query: 181 FSARTFKIKDDEGFRTYYFYEFGKNEEHVALVATVNSGQAFVAGATAPLSKWDEDGIKLR 240
           FSART KIK+DEGFRTYYFYEFG++E+H ALVA VNSG+A +AGATAP SKWD DG+KLR
Sbjct: 181 FSARTIKIKEDEGFRTYYFYEFGRDEQHAALVAAVNSGKAIIAGATAPQSKWDSDGVKLR 240

Query: 241 SAAISLTVL 249
           SAAISLTVL
Sbjct: 241 SAAISLTVL 246

[Close]
BLAST of Cp4.1LG11g09550 vs. NCBI nr
Match: gi|224123242|ref|XP_002319030.1| (hypothetical protein POPTR_0013s02750g [Populus trichocarpa])

HSP 1 Score: 337.4 bits (864), Expect = 2.1e-89
Identity = 175/253 (69.17%), Postives = 204/253 (80.63%), Query Frame = 1 

Query: 1   MALLLSLCLH----PPNLQQNPTAAVPHPTTVGFHEPTSLNSNSKRHFILKTASLCLISL 60
           MA+LLSL  H    P N +QNP    P PT      P+++   SKR FI KT SLCLISL
Sbjct: 1   MAILLSLSPHHHHPPLNPRQNPNPYSPKPTPHATSLPSTI---SKRQFIFKTTSLCLISL 60

Query: 61  IPKCPVAQS-SQISPTSKQGLPGLANTKSWFQFYGDGFSIRVPPQFEDLTEPEDFNAGLS 120
             + P+AQ+ ++ SP  K  L  LANTKSWFQFYGDGF+IRVPPQFED+ EPED++AGLS
Sbjct: 61  ATQHPLAQALAEPSPPLKSVLSILANTKSWFQFYGDGFAIRVPPQFEDIMEPEDYSAGLS 120

Query: 121 LYGDKVKTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPG 180
           LYGDK K KTFAARF S DGSEVL+VV RP+NQLKITFLEAKDITD+GSL+EAAK+FVPG
Sbjct: 121 LYGDKAKPKTFAARFASSDGSEVLNVVVRPSNQLKITFLEAKDITDLGSLKEAAKLFVPG 180

Query: 181 GATLFSARTFKIKDDEGFRTYYFYEFGKNEEHVALVATVNSGQAFVAGATAPLSKWDEDG 240
           G TLFSART KIK++EG+RTYYFYEFG++++H ALVA VNSG+A +AGATAP SKWDEDG
Sbjct: 181 GTTLFSARTLKIKEEEGYRTYYFYEFGRDDQHAALVAVVNSGKAIIAGATAPQSKWDEDG 240

Query: 241 IKLRSAAISLTVL 249
           +KLRSA ISLTVL
Sbjct: 241 VKLRSAVISLTVL 250

[Close]
BLAST of Cp4.1LG11g09550 vs. NCBI nr
Match: gi|659070440|ref|XP_008455083.1| (PREDICTED: uncharacterized protein LOC103495336 isoform X2 [Cucumis melo])

HSP 1 Score: 337.4 bits (864), Expect = 2.1e-89
Identity = 168/197 (85.28%), Postives = 179/197 (90.86%), Query Frame = 1 

Query: 1   MALLLSLCLH-PPNLQQNPTAAVPHPTTVGFHEPTSLNSNSKRHFILKTASLCLISLIPK 60
           MA+ LSLCLH PPN  QNPT+AVP PTTV F   ++LNS SKRHFILKTASLCLIS  PK
Sbjct: 1   MAIPLSLCLHHPPNPHQNPTSAVPPPTTVCFPASSTLNSQSKRHFILKTASLCLISFFPK 60

Query: 61  CPVAQSSQISPTSKQGLPGLANTKSWFQFYGDGFSIRVPPQFEDLTEPEDFNAGLSLYGD 120
           CPV QSS+ SPTSK GLP +ANTKSWFQFYGDGFSIRVPPQFEDLTEPED++AGLSLYGD
Sbjct: 61  CPVVQSSENSPTSKPGLPAIANTKSWFQFYGDGFSIRVPPQFEDLTEPEDYSAGLSLYGD 120

Query: 121 KVKTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGGATL 180
           K KTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGG+TL
Sbjct: 121 KAKTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGGSTL 180

Query: 181 FSARTFKIKDDEGFRTY 197
           FSARTFKIK+DEGFR +
Sbjct: 181 FSARTFKIKEDEGFRNF 197

The following BLAST results are available for this feature:
BLAST of Cp4.1LG11g09550 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG11g09550 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJH6_CUCSA4.2e-12188.76Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020900 PE=4 SV=1[more]
A0A067JI42_JATCU5.3e-9271.49Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23385 PE=4 SV=1[more]
B9I7Z3_POPTR1.5e-8969.17Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s02750g PE=4 SV=1[more]
A0A061F3E6_THECC1.2e-8868.53Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein isofor... [more]
B9RF17_RICCO2.3e-8768.80Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1430460 PE=4 SV=1[more]
BLAST of Cp4.1LG11g09550 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G27390.13.9e-7859.29 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family pr... [more]
BLAST of Cp4.1LG11g09550 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449442861|ref|XP_004139199.1|6.0e-12188.76PREDICTED: uncharacterized protein LOC101214471 [Cucumis sativus][more]
gi|659070438|ref|XP_008455075.1|6.6e-12088.35PREDICTED: uncharacterized protein LOC103495336 isoform X1 [Cucumis melo][more]
gi|802757066|ref|XP_012089111.1|7.7e-9271.49PREDICTED: uncharacterized protein LOC105647584 [Jatropha curcas][more]
gi|224123242|ref|XP_002319030.1|2.1e-8969.17hypothetical protein POPTR_0013s02750g [Populus trichocarpa][more]
gi|659070440|ref|XP_008455083.1|2.1e-8985.28PREDICTED: uncharacterized protein LOC103495336 isoform X2 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
cellular_component GO:0019898 extrinsic component of membrane
cellular_component GO:0009654 photosystem II oxygen evolving complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0016853 isomerase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g09550.1Cp4.1LG11g09550.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG11g09550CmaCh05G011600Cucurbita maxima (Rimu)cmacpeB767
Cp4.1LG11g09550CmoCh05G011710Cucurbita moschata (Rifu)cmocpeB721
Cp4.1LG11g09550CsaV3_2G004900Cucumber (Chinese Long) v3cpecucB0114
Cp4.1LG11g09550CsGy2G003680Cucumber (Gy14) v2cgybcpeB168
Cp4.1LG11g09550Carg12883Silver-seed gourdcarcpeB1252
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG11g09550Cp4.1LG00g09040Cucurbita pepo (Zucchini)cpecpeB001
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG11g09550Cucurbita pepo (Zucchini)cpecpeB139
Cp4.1LG11g09550Cucumber (Gy14) v1cgycpeB0168
Cp4.1LG11g09550Cucurbita maxima (Rimu)cmacpeB171
Cp4.1LG11g09550Cucurbita moschata (Rifu)cmocpeB051
Cp4.1LG11g09550Cucurbita moschata (Rifu)cmocpeB147
Cp4.1LG11g09550Wild cucumber (PI 183967)cpecpiB100
Cp4.1LG11g09550Cucumber (Chinese Long) v2cpecuB103
Cp4.1LG11g09550Bottle gourd (USVL1VR-Ls)cpelsiB074
Cp4.1LG11g09550Watermelon (Charleston Gray)cpewcgB104
Cp4.1LG11g09550Watermelon (97103) v1cpewmB113
Cp4.1LG11g09550Melon (DHL92) v3.5.1cpemeB099
Cp4.1LG11g09550Melon (DHL92) v3.6.1cpemedB123
Cp4.1LG11g09550Silver-seed gourdcarcpeB1005