Carg12883 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12883
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Photosystem II reaction center PsbP family protein
Location	Cucurbita_argyrosperma_scaffold_043 : 950784 .. 956692 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCTTCTTCTTTCTTTATGCCTCCACCCTCCAAACCTTCAGCAAAACCCCACCGCCGCCGTCCCCCACCCGACCACCGTCGGATTTCACGAGCCTACAACGCTGAATTCCAATTCCAAGAGACATTTCATCCTCAAAACGGCTTCACTCTGTCTAATTTCATTGATTCCAAAATGCCCAGTTGCCCAATCTTCCCAAATTTCGCCTACTTCGAAACAAGGCCTTCCTGGCCTTGCAAATACAAAGTCTTGGTTTCAGTTTTATGGTGATGGGTTCTCCATTCGTGTGCCGCCTCAGTTTGAAGACCTCACGGAGCCTGAGGTATGAACAAAATACCTCACTGATTTCTGTTTGTTTAATCGTAGTGTTGTGTGTGTTACCTCTGCTTCCACCAATATGAATAGTTTAAGGTTATTTACGGTTCATATTTGTTTGGAAACCCACATGTTTAGTTGCTGTTAATGTCAATGGCATTAAGCAGAAGGCTCCAGCTTCAGGGCTTTGAGAATACCCCTTAATGTTTTGATTGGGGAATTCTAACCTCAGGCTTTAGAATTATTATTGGCGTTGCTAGGTGGGGTTGAGAGACAGAGTCAGATTTTGGGGTTCTTCCATTGTGAGATCCTAGAATGGTTGGAGAAGAGAACGAAGCATTCCTTATAATGGTGTGGAAACCTCTCCATAACAGACGCGTTTTAAAACCTTGAGGGGAAATCCGAAGGAAAAGCCCAAAGAGGAAAATATCCGCTAGCGGTGGGCTTGGTACTGGGCGGTGTGCCAGTGAGGATGTTGGTCCCTAAGGGGGTGGATTGTGAGATTCCACATCAGTTGGAGAGGAGAACGAAGTATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGCATACGTGTTTTAAAACCTTGAGGGGAAACCTAAAGGGAAAGTCAAAAAGGACAATATCTACTAGCGGTGGGCTTGGTAGCGGGTGGTGTACCAGTGAGGACGTTGGTCCCCAAGGAGGGTGGACTGTGAGATTCCACATCGGTTGGAGAGGAGAATTAAGCATTTCTTATAAGGGTGTAGAAACCTCTCCTAGTGGTGGGTGGACAACTGTGTGGACCAATGGGCTTAATCTACTAGCGGTGTGCCAACGGGGATGTTGGGCCCCAAGGGGGTGGATTGTGAGATCCCACATCGATTGGAGAGGAGAATGAAGCAATACTTATAAGAGTGTAGAAACCTCACCCTAGCAAACGCGTTATAAACCTCGAGGGGAAACCTAAAGGGAAAACCCAAATAGGACAATATCTGCTAGTGGTGGGTTTGGGACCGGGCGGTGTGCCAGCGAGGACCTTGGGCCCTTAAGGGAGGTGGATTGTGAGATCCCAAATCAGTTAGAGAGGAGAATGAAGCATTCCTTATAAGGGCGTAGAAACCTCTCCCTAGCAGACATGTCTTAAAACCTCGAGGGAAAACTCGAAGGGAAGTCCAAAAAGAACAATATCTCCGCAGTGGGCATGCGTTGAATTTTTTCTTGATTTTATTAGTGTATTCCACACAAGAGCTTGATGTGATCTTCATGTAAAGAAACAACAGCTACTAATTAGACTATATCTTTGTTCAACTCCTCTCCTACCTTTAGGCATTCTTATAACTATTCCCTTATGCTCGGAAGCTGTGGCCTTTCTTGTACTTGTAAAAGGCTTATCATTTGCAGCTCGCTAAGTTATGTGCTTGGGGCTTGTAGGATTTCAATGCTGGACTCTCTCTTTATGGAGATAAGGTAAAAACGAAAACGTTCGCAGCTCGGTTTGGATCTCCTGATGGGTAATGATATTTCTCTTCGTTCATATTGTTTGCTTTATGTATTTGGCTTATATTCATTCTGCTTTGTTGGTTAACACAGCTCTGAAGTTCTAAGCGTTGTCACTCGTCCAACGAATCAACTTAAGATCACCTTTCTAGAGGTAGCACAATGATGGCTGTGAAGTTTTCATTTGGTAATTCTAAAGAGCATCAATTTCTTACTAAATAGTTCATATCTAGCAAACCGTTTCTAAGCTCGGTGGCTCTTTCGTACTAAGAAGCTCTACCTAGAGAAAATCCCCATCAAATCTTAAACTGTTAAGTCATGTTTTGGAGCTTTTAAGCCCAAGATTGTTTGCTTACTGTTAACTCTGAGCTTCCCAAAGAGGGTTTTGAAGTTTCTAGTCACGAACTTCGATAAAAAAGATTCTGTTTTAGTTCTACGTACGTGCTTATTGAGTTATGTTCGTGTTTTATGGATAACGGTTTTAGGAGCTTTTCGTTTTTTCTTGTGAAAAACAGGCGAAAGATATAACTGATATAGGTTCCTTGAGGGAGGCTGCAAAAATCTTTGTTCCAGGTACACATTTTGTGTTCAATATGCTAAGTAACTTTTTTGTGGTCATTTGGCTACACATCTCATTCTACCTATTGGTTTTGGTGTTCTTACAATGATAGGTGGTGCAACGTTATTTTCGGCCCGAACGTTTAAAATTAAGGATGATGAAGGTTTCAGGTAACTATTCTACCAAGGCGTCCTTGCTAGTTCGATTTGTTTTTATCTTTTCGAGATTTGATTAAGATCAATGAAACAATGGAATTGGATAATACAAAATGAAGAAAAGCCCACTTTAGAAAGAGCTTGTAGAAAGAAAGTCGACTTGAGATTACGAAAATGGCTGTGGTTGTTGAGAAGAAGAGGCAAAGGCTAGTTATAGAAATCCTTAGAAATCAAAACTCTAGAAAGGAAGAAACCTAACCATAGAACACGCCTCTCAAAGGGCTCACAAGCTATCTAAAGGGCGGATCGATTGTTCCACAAAATAGGAAGTGTCGGTACACCAAAGAGTCCATCATTGAGCGATAGATTGAATGAGTTCAAGCTATGGTAGCCATGTACCGGAGGTTTATTGTAACAACCCAGATCCACCGCTAGCAGATATTGTCCTCTTTGGGCTTTCCCTTTCGGGCTTGCCCTCAAGGCTTTAAAACGCGTCTGATAGGGGAAGGTTTCCACACCCTTATAAATGGTGGTTTGTTCTCCTCCTCAACCAATGTGGGACATCACAATCCACCCCCCTTCGGGGCCCAGCATCCTCGCTGGCACTCTTTCCTTCCTCCAATCGATGTGGAACCGCCCCCAAATCCACCCCCCTTGGGGCCCAGCGTCCTTACTAGCACACCGCCTTGTGTCTACCCCCCTTCGAGGAACAGCAAGAAGGTTGGCACATCGTCCGGTGTCTGGCTCTGATACCATTTGTAATGACCTAGATCCACCGCTAGCAAATATTGTTCTCTTTGGGTTTTCCCTTTCGGGCTCGCCCTCAAGGCTTTAAAACGCGTCTGCTTGGGGAAGGTTTCCACACCTTTATAAATGGTGGTTTGTTCTCCTCCCCAACCAATGTGGGACATCACATTTATATTTTACGAGTTTTCTTGGCAACCAAGTATGATAGGGTTAGACAACCGTCTTAAGGTTTAGATGGAATGAGTTCAAGCTATTGTAGACATGAACCTGCGGTTTATATTCTACGAGTTTTCTTGGCAACCAAGTATGATAGGGTTAGACAGTTGTTGAAGTTAGTGGATCCTAACTCACACTCAAGAACATAAACAATGCTATGAAATAATAATCTAGATCTAGTCTTCTTTGCCTATATAAGCTTTCATATTTCCATTTGATTACCTCTGTTTCGTTAAATTCAGGACGTATTACTTCTACGAGTTTGGGAAGAACGAAGAACACGTCGCGTTAGTAGCAACTGTTAACAGTGGACAGGTTTGTGATATACAATTTACCTTACATACTAAACTTCTTACTCTGATGAAGACCTGAGTTTGAGCCATTTCACTTGCTTTATGACATTTGGATGAAATTATAAAATGGTAGAACTTGTATGAATAAGAGTTGATTCAAAGTTAAATTGTTCATGCCAAAGGTCTTACTCATTGATATGTGTAGAGTTTTATATCCACCTCAGTTGAAGAGAGAAACGAAGCATTTCTTATAAGGGTGTGGAAACCTCTCCCTAGAAGATGCGTTTTAAAACCTTGAGGGAAGCCCAGAAGGGAAAGTCCAAAGAGGACAATATCTGCTAGTGGTGGGCTTGGGCTGTTACAAATGGTATCAAAGCCAGATGTCGAGCGGTGTGCCAACGAGTACGCTGCACTCCCAAAGGAGTGGATTGTGAGATCTCATATCGGTTGGAGAAGAGAACGAAGCATTCCTTATAAGGGTGTGGAAACCTCTCCTTAGAAAATGCATTTTAAAACCTTGAGGGGAAGCCCATAAGGGAAATTCCAAAGAGAACAATATCTGCTAGCGGTGGGTTAGGCTATTACAAATGGTATCAGAACCAGATACCGAACGGTGTGCCAGCGAGCACATTGGGCTTCCAAAGGGGATGGATTGTGAGATCCCACATCGATTGGAGAGAGAAACGAAGCATTTCTTATAAGGGTGTGGAAACCTCTCCCTAGAAAACATGTTTTAAAACTTTGAGGGAAAGCCCAGAAAGGAAAGTTCAAAGAGGACAATATCTGCTAGTGGTGGGCTTGGGCTGTTACAAATGGTATCAGAGCCAAACGTCGAGCGGTGTGCCAGTGAGAACGCTGTGCTCCCAAGGGGGGTGGATTGTGAGATCCCATATGGGTTGGAGAGGAGAACGAACCACTCCTTATAAGGGTGTGGAAACCGCTCCCAAGGGGGTGGATTGTGAGATCCCATATGGGTTGGAGAGGAGAACGAAGCACTTCTTATAAGGGTGTGGAAACCTCTCCCTAGGAAATGCATTTTAAAACCTTGAGAGGAAGTCCATAAGGAAAAACCCAAAGAGGACAATATCTGCTAGCGGTAGGTTTGGGCAGTTACAAACTCGTCCAATTTATCTTGACATATCGTCTTCTTTGTCGTAGGCGTTTGTTGCCTGGAGCAACCGCACCATTGTCCAAATGGGATGAAGATGGCATAAAACTCCGTTCTGCTGCTATATCTCTAACCGTGCTATAATCAATTGCTGATCAAGTTATTTTCATTAGCTTGTGAGTACTCCCCAAAACTTTACACTCATGAATTGAATATCATATAAAATCTCGAATAAATTATAAATTTATATCGTGAACTTTGAATATTGTGCCTATTTAATCCGTAAACTTCAAAAAAAATATGATTTATGTTCCTTAACTCTTGATGATGCTCGTATTTAGCTGCTAAATTAATACCGTTAACGACATGCTCGTAACATTAATATTGATTGAGTTGACATGATATGCTGAACTAAATTATCGTAGTGTTCAATATCTAGAGAATATAATCGAACCTAAAATCTTCGTTACGATGAGCATGAAGTAAACTATTCTACGACCACTAGGCCTTAATGAACTTCATTTTAACATCACTCGACCTTTTGTAACTATGATCTTAGTTTGATTAGGTTGGATTGGAACACTTTCTTCGTTCATTTCTTTCCATGAAAACTCGGTTTCTTGCGAAACAAACGGACGTTTAAGATCCTATTGCTGTTTCTACAGATTGTTTAAACTTAATTTGTGAGAATTGTTTGATTGTGAGTGACCCTTCAATCTCTTGAACGGACAGGAGGAAGCTTTTGGTAAGTCCCCCAGTTGGCAGAGAGACAGCTAGATTTGTGTATACATTTTTGTAAGAATTGTACTTTGAAATGGGTATGCTGAGTGATGAGTGGTGCTTGATTAATGTGGTACCCTTTGTTCTTATATGATCGTTGTCAAACTTGAACTCGTTTTTTCTCTTTTGATAAGGTATATAGAGATGTCCACGGGATGGAGAGTGGAGACTGGGAAGCTTTCCTTGTCTCTGTCTACATCTCTTGTTTATGTAACAGTTTAAGTTCACCGCTAATGGATATTGTCTGCTTTGGCCTA

mRNA sequence

ATGGCCCTTCTTCTTTCTTTATGCCTCCACCCTCCAAACCTTCAGCAAAACCCCACCGCCGCCGTCCCCCACCCGACCACCGTCGGATTTCACGAGCCTACAACGCTGAATTCCAATTCCAAGAGACATTTCATCCTCAAAACGGCTTCACTCTGTCTAATTTCATTGATTCCAAAATGCCCAGTTGCCCAATCTTCCCAAATTTCGCCTACTTCGAAACAAGGCCTTCCTGGCCTTGCAAATACAAAGTCTTGGTTTCAGTTTTATGGTGATGGGTTCTCCATTCGTGTGCCGCCTCAGTTTGAAGACCTCACGGAGCCTGAGGATTTCAATGCTGGACTCTCTCTTTATGGAGATAAGGTAAAAACGAAAACGTTCGCAGCTCGGTTTGGATCTCCTGATGGCTCTGAAGTTCTAAGCGTTGTCACTCGTCCAACGAATCAACTTAAGATCACCTTTCTAGAGGCGAAAGATATAACTGATATAGGTTCCTTGAGGGAGGCTGCAAAAATCTTTGTTCCAGGTGGTGCAACGTTATTTTCGGCCCGAACGTTTAAAATTAAGGATGATGAAGGTTTCAGGACGTATTACTTCTACGAGTTTGGGAAGAACGAAGAACACGTCGCGTTAGTAGCAACTGTTAACAGTGGACAGGCGTTTGTTGCCTGGAGCAACCGCACCATTGTCCAAATGGGATGAAGATGGCATAAAACTCCGTTCTGCTGCTATATCTCTAACCGTGCTATAATCAATTGCTGATCAAGTTATTTTCATTAGCTTGAGGAAGCTTTTGGTAAGTCCCCCAGTTGGCAGAGAGACAGCTAGATTTGTGTATACATTTTTGTAAGAATTGTACTTTGAAATGGGTATGCTGAGTGATGAGTGGTGCTTGATTAATGTGGTACCCTTTGTTCTTATATGATCGTTGTCAAACTTGAACTCGTTTTTTCTCTTTTGATAAGGTATATAGAGATGTCCACGGGATGGAGAGTGGAGACTGGGAAGCTTTCCTTGTCTCTGTCTACATCTCTTGTTTATGTAACAGTTTAAGTTCACCGCTAATGGATATTGTCTGCTTTGGCCTA

Coding sequence (CDS)

ATGGCCCTTCTTCTTTCTTTATGCCTCCACCCTCCAAACCTTCAGCAAAACCCCACCGCCGCCGTCCCCCACCCGACCACCGTCGGATTTCACGAGCCTACAACGCTGAATTCCAATTCCAAGAGACATTTCATCCTCAAAACGGCTTCACTCTGTCTAATTTCATTGATTCCAAAATGCCCAGTTGCCCAATCTTCCCAAATTTCGCCTACTTCGAAACAAGGCCTTCCTGGCCTTGCAAATACAAAGTCTTGGTTTCAGTTTTATGGTGATGGGTTCTCCATTCGTGTGCCGCCTCAGTTTGAAGACCTCACGGAGCCTGAGGATTTCAATGCTGGACTCTCTCTTTATGGAGATAAGGTAAAAACGAAAACGTTCGCAGCTCGGTTTGGATCTCCTGATGGCTCTGAAGTTCTAAGCGTTGTCACTCGTCCAACGAATCAACTTAAGATCACCTTTCTAGAGGCGAAAGATATAACTGATATAGGTTCCTTGAGGGAGGCTGCAAAAATCTTTGTTCCAGGTGGTGCAACGTTATTTTCGGCCCGAACGTTTAAAATTAAGGATGATGAAGGTTTCAGGACGTATTACTTCTACGAGTTTGGGAAGAACGAAGAACACGTCGCGTTAGTAGCAACTGTTAACAGTGGACAGGCGTTTGTTGCCTGGAGCAACCGCACCATTGTCCAAATGGGATGA

Protein sequence

MALLLSLCLHPPNLQQNPTAAVPHPTTVGFHEPTTLNSNSKRHFILKTASLCLISLIPKCPVAQSSQISPTSKQGLPGLANTKSWFQFYGDGFSIRVPPQFEDLTEPEDFNAGLSLYGDKVKTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGGATLFSARTFKIKDDEGFRTYYFYEFGKNEEHVALVATVNSGQAFVAWSNRTIVQMG

Homology

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BLAST of Carg12883 vs. NCBI nr
Match: XP_022946291.1 (uncharacterized protein LOC111450417 isoform X2 [Cucurbita moschata])

HSP 1 Score: 449.1 bits (1154), Expect = 8.9e-123
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 0


Query: 1   MALLLSLCLHPPNLQQNPTAAVPHPTTVGFHEPTTLNSNSKRHFILKTASLCLISLIPKC 60
           MALLLSLCLHPPNLQQNPTAAVPHPTTVGFHEPTTLNSNSKRHFILKTASLCLISLIPKC
Sbjct: 1   MALLLSLCLHPPNLQQNPTAAVPHPTTVGFHEPTTLNSNSKRHFILKTASLCLISLIPKC 60

Query: 61  PVAQSSQISPTSKQGLPGLANTKSWFQFYGDGFSIRVPPQFEDLTEPEDFNAGLSLYGDK 120
           PVAQSSQISPTSKQGLPGLANTKSWFQFYGDGFSIRVPPQFEDLTEPEDFNAGLSLYGDK
Sbjct: 61  PVAQSSQISPTSKQGLPGLANTKSWFQFYGDGFSIRVPPQFEDLTEPEDFNAGLSLYGDK 120

Query: 121 VKTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGGATLF 180
           VKTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGGATLF
Sbjct: 121 VKTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGGATLF 180

Query: 181 SARTFKIKDDEGFRTYYFYEFGKNEEHVALVATVNSGQAFVA 223
           SARTFKIKDDEGFRTYYFYEFGKNEEHVALVATVNSGQAFVA
Sbjct: 181 SARTFKIKDDEGFRTYYFYEFGKNEEHVALVATVNSGQAFVA 222

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BLAST of Carg12883 vs. NCBI nr
Match: XP_023521934.1 (uncharacterized protein LOC111785779 [Cucurbita pepo subsp. pepo] >XP_023521935.1 uncharacterized protein LOC111785779 [Cucurbita pepo subsp. pepo] >XP_023545472.1 uncharacterized protein LOC111804892 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023545473.1 uncharacterized protein LOC111804892 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023545474.1 uncharacterized protein LOC111804892 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023545475.1 uncharacterized protein LOC111804892 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 447.6 bits (1150), Expect = 2.6e-122
Identity = 221/222 (99.55%), Postives = 222/222 (100.00%), Query Frame = 0


Query: 1   MALLLSLCLHPPNLQQNPTAAVPHPTTVGFHEPTTLNSNSKRHFILKTASLCLISLIPKC 60
           MALLLSLCLHPPNLQQNPTAAVPHPTTVGFHEPT+LNSNSKRHFILKTASLCLISLIPKC
Sbjct: 1   MALLLSLCLHPPNLQQNPTAAVPHPTTVGFHEPTSLNSNSKRHFILKTASLCLISLIPKC 60

Query: 61  PVAQSSQISPTSKQGLPGLANTKSWFQFYGDGFSIRVPPQFEDLTEPEDFNAGLSLYGDK 120
           PVAQSSQISPTSKQGLPGLANTKSWFQFYGDGFSIRVPPQFEDLTEPEDFNAGLSLYGDK
Sbjct: 61  PVAQSSQISPTSKQGLPGLANTKSWFQFYGDGFSIRVPPQFEDLTEPEDFNAGLSLYGDK 120

Query: 121 VKTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGGATLF 180
           VKTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGGATLF
Sbjct: 121 VKTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGGATLF 180

Query: 181 SARTFKIKDDEGFRTYYFYEFGKNEEHVALVATVNSGQAFVA 223
           SARTFKIKDDEGFRTYYFYEFGKNEEHVALVATVNSGQAFVA
Sbjct: 181 SARTFKIKDDEGFRTYYFYEFGKNEEHVALVATVNSGQAFVA 222

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BLAST of Carg12883 vs. NCBI nr
Match: XP_022999130.1 (uncharacterized protein LOC111493605 isoform X2 [Cucurbita maxima] >XP_022999131.1 uncharacterized protein LOC111493605 isoform X2 [Cucurbita maxima])

HSP 1 Score: 443.0 bits (1138), Expect = 6.4e-121
Identity = 218/219 (99.54%), Postives = 219/219 (100.00%), Query Frame = 0


Query: 4   LLSLCLHPPNLQQNPTAAVPHPTTVGFHEPTTLNSNSKRHFILKTASLCLISLIPKCPVA 63
           LLSLCLHPPNLQQNPTAAVPHPTTVGFHEPTTLNSNSKRHFILK+ASLCLISLIPKCPVA
Sbjct: 3   LLSLCLHPPNLQQNPTAAVPHPTTVGFHEPTTLNSNSKRHFILKSASLCLISLIPKCPVA 62

Query: 64  QSSQISPTSKQGLPGLANTKSWFQFYGDGFSIRVPPQFEDLTEPEDFNAGLSLYGDKVKT 123
           QSSQISPTSKQGLPGLANTKSWFQFYGDGFSIRVPPQFEDLTEPEDFNAGLSLYGDKVKT
Sbjct: 63  QSSQISPTSKQGLPGLANTKSWFQFYGDGFSIRVPPQFEDLTEPEDFNAGLSLYGDKVKT 122

Query: 124 KTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGGATLFSAR 183
           KTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGGATLFSAR
Sbjct: 123 KTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGGATLFSAR 182

Query: 184 TFKIKDDEGFRTYYFYEFGKNEEHVALVATVNSGQAFVA 223
           TFKIKDDEGFRTYYFYEFGKNEEHVALVATVNSGQAFVA
Sbjct: 183 TFKIKDDEGFRTYYFYEFGKNEEHVALVATVNSGQAFVA 221

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BLAST of Carg12883 vs. NCBI nr
Match: XP_022946289.1 (uncharacterized protein LOC111450417 isoform X1 [Cucurbita moschata] >XP_022946290.1 uncharacterized protein LOC111450417 isoform X1 [Cucurbita moschata])

HSP 1 Score: 441.0 bits (1133), Expect = 2.4e-120
Identity = 222/232 (95.69%), Postives = 222/232 (95.69%), Query Frame = 0


Query: 1   MALLLSLCLHPPNLQQNPTAAVPHPTTVGFHEPTTLNSNSKRHFILKTASLCLISLIPKC 60
           MALLLSLCLHPPNLQQNPTAAVPHPTTVGFHEPTTLNSNSKRHFILKTASLCLISLIPKC
Sbjct: 1   MALLLSLCLHPPNLQQNPTAAVPHPTTVGFHEPTTLNSNSKRHFILKTASLCLISLIPKC 60

Query: 61  PVAQSSQISPTSKQGLPGLANTKSWFQFYGDGFSIRVPPQFEDLTEPEDFNAGLSLYGDK 120
           PVAQSSQISPTSKQGLPGLANTKSWFQFYGDGFSIRVPPQFEDLTEPEDFNAGLSLYGDK
Sbjct: 61  PVAQSSQISPTSKQGLPGLANTKSWFQFYGDGFSIRVPPQFEDLTEPEDFNAGLSLYGDK 120

Query: 121 VKTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLE----------AKDITDIGSLREAAK 180
           VKTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLE          AKDITDIGSLREAAK
Sbjct: 121 VKTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEELFVFSCEKQAKDITDIGSLREAAK 180

Query: 181 IFVPGGATLFSARTFKIKDDEGFRTYYFYEFGKNEEHVALVATVNSGQAFVA 223
           IFVPGGATLFSARTFKIKDDEGFRTYYFYEFGKNEEHVALVATVNSGQAFVA
Sbjct: 181 IFVPGGATLFSARTFKIKDDEGFRTYYFYEFGKNEEHVALVATVNSGQAFVA 232

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BLAST of Carg12883 vs. NCBI nr
Match: XP_022999127.1 (uncharacterized protein LOC111493605 isoform X1 [Cucurbita maxima] >XP_022999128.1 uncharacterized protein LOC111493605 isoform X1 [Cucurbita maxima] >XP_022999129.1 uncharacterized protein LOC111493605 isoform X1 [Cucurbita maxima])

HSP 1 Score: 435.3 bits (1118), Expect = 1.3e-118
Identity = 218/228 (95.61%), Postives = 219/228 (96.05%), Query Frame = 0


Query: 4   LLSLCLHPPNLQQNPTAAVPHPTTVGFHEPTTLNSNSKRHFILKTASLCLISLIPKCPVA 63
           LLSLCLHPPNLQQNPTAAVPHPTTVGFHEPTTLNSNSKRHFILK+ASLCLISLIPKCPVA
Sbjct: 3   LLSLCLHPPNLQQNPTAAVPHPTTVGFHEPTTLNSNSKRHFILKSASLCLISLIPKCPVA 62

Query: 64  QSSQISPTSKQGLPGLANTKSWFQFYGDGFSIRVPPQFEDLTEPEDFNAGLSLYGDKVKT 123
           QSSQISPTSKQGLPGLANTKSWFQFYGDGFSIRVPPQFEDLTEPEDFNAGLSLYGDKVKT
Sbjct: 63  QSSQISPTSKQGLPGLANTKSWFQFYGDGFSIRVPPQFEDLTEPEDFNAGLSLYGDKVKT 122

Query: 124 KTFAARFGSPDGSEVLSVVTRPTNQLKITFLE---------AKDITDIGSLREAAKIFVP 183
           KTFAARFGSPDGSEVLSVVTRPTNQLKITFLE         AKDITDIGSLREAAKIFVP
Sbjct: 123 KTFAARFGSPDGSEVLSVVTRPTNQLKITFLEELPFSCEKQAKDITDIGSLREAAKIFVP 182

Query: 184 GGATLFSARTFKIKDDEGFRTYYFYEFGKNEEHVALVATVNSGQAFVA 223
           GGATLFSARTFKIKDDEGFRTYYFYEFGKNEEHVALVATVNSGQAFVA
Sbjct: 183 GGATLFSARTFKIKDDEGFRTYYFYEFGKNEEHVALVATVNSGQAFVA 230

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BLAST of Carg12883 vs. TAIR10
Match: AT5G27390.1 (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein)

HSP 1 Score: 254.2 bits (648), Expect = 7.7e-68
Identity = 132/228 (57.89%), Postives = 174/228 (76.32%), Query Frame = 0


Query: 1   MALLL-SLCLHPPNLQ-QNPTAAVPHPTTVGFHEPTTLNSNS--KRHFILKTASLCLISL 60
           MA+LL SL LHPPN + QNP            ++P  L+S++  +R  +L+TASLC +S 
Sbjct: 1   MAILLHSLSLHPPNPKPQNP------------YKPKILSSSATFRRDVVLRTASLCFVSF 60

Query: 61  I--PKCPVAQSSQISPTSKQGLPGLANTKSWFQFYGDGFSIRVPPQFEDLTEPEDFNAGL 120
           I   + P + +  +  T    L G+ANTKSWFQ++G GF+IRVPP FED+ EPED++AGL
Sbjct: 61  IFQNQIPESLADPLKSTKPLRL-GIANTKSWFQYFGSGFAIRVPPDFEDVNEPEDYSAGL 120

Query: 121 SLYGDKVKTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVP 180
           SLYGDK K +TFAARF +PDGSEVLSVV RP+NQLKITFLEAKDI+D+GSL+ AA++FVP
Sbjct: 121 SLYGDKAKPQTFAARFQTPDGSEVLSVVIRPSNQLKITFLEAKDISDLGSLKAAARLFVP 180

Query: 181 GGATLFSARTFKIKDDEGFRTYYFYEFGKNEEHVALVATVNSGQAFVA 223
           G AT++SART K+K++EG R YYFYEFG++EE +ALVA+VN G+ ++A
Sbjct: 181 GAATIYSARTIKVKEEEGLRNYYFYEFGRDEERIALVASVNRGKVYIA 215

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BLAST of Carg12883 vs. TrEMBL
Match: tr|A0A0A0LJH6|A0A0A0LJH6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G020900 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 1.1e-105
Identity = 194/223 (87.00%), Postives = 206/223 (92.38%), Query Frame = 0


Query: 1   MALLLSLCL-HPPNLQQNPTAAVPHPTTVGFHEPTTLNSNSKRHFILKTASLCLISLIPK 60
           MA+ LSLC+ HPPN  QNPT+ VP PTT+ F  PT+LNS SKRHFILKTASLCLIS IPK
Sbjct: 1   MAIPLSLCIHHPPNPHQNPTSPVPPPTTLCFPAPTSLNSKSKRHFILKTASLCLISFIPK 60

Query: 61  CPVAQSSQISPTSKQGLPGLANTKSWFQFYGDGFSIRVPPQFEDLTEPEDFNAGLSLYGD 120
           CPV QSS+ SPTSK GLP +ANTKSWFQFYGDGFSIRVPPQFEDLTEPED++AGLSLYGD
Sbjct: 61  CPVVQSSENSPTSKPGLPAIANTKSWFQFYGDGFSIRVPPQFEDLTEPEDYSAGLSLYGD 120

Query: 121 KVKTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGGATL 180
           K KTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGG+TL
Sbjct: 121 KAKTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGGSTL 180

Query: 181 FSARTFKIKDDEGFRTYYFYEFGKNEEHVALVATVNSGQAFVA 223
           FSARTFKIK+DEGFRTYYFYEFGKNE+HVALVATVNSGQ FVA
Sbjct: 181 FSARTFKIKEDEGFRTYYFYEFGKNEQHVALVATVNSGQVFVA 223

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BLAST of Carg12883 vs. TrEMBL
Match: tr|A0A1S3C1A2|A0A1S3C1A2_CUCME (uncharacterized protein LOC103495336 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495336 PE=4 SV=1)

HSP 1 Score: 391.0 bits (1003), Expect = 1.9e-105
Identity = 195/223 (87.44%), Postives = 205/223 (91.93%), Query Frame = 0


Query: 1   MALLLSLCL-HPPNLQQNPTAAVPHPTTVGFHEPTTLNSNSKRHFILKTASLCLISLIPK 60
           MA+ LSLCL HPPN  QNPT+AVP PTTV F   +TLNS SKRHFILKTASLCLIS  PK
Sbjct: 1   MAIPLSLCLHHPPNPHQNPTSAVPPPTTVCFPASSTLNSQSKRHFILKTASLCLISFFPK 60

Query: 61  CPVAQSSQISPTSKQGLPGLANTKSWFQFYGDGFSIRVPPQFEDLTEPEDFNAGLSLYGD 120
           CPV QSS+ SPTSK GLP +ANTKSWFQFYGDGFSIRVPPQFEDLTEPED++AGLSLYGD
Sbjct: 61  CPVVQSSENSPTSKPGLPAIANTKSWFQFYGDGFSIRVPPQFEDLTEPEDYSAGLSLYGD 120

Query: 121 KVKTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGGATL 180
           K KTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGG+TL
Sbjct: 121 KAKTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGGSTL 180

Query: 181 FSARTFKIKDDEGFRTYYFYEFGKNEEHVALVATVNSGQAFVA 223
           FSARTFKIK+DEGFRTYYFYEFGKNE+HVALVATVNSGQ FVA
Sbjct: 181 FSARTFKIKEDEGFRTYYFYEFGKNEQHVALVATVNSGQVFVA 223

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BLAST of Carg12883 vs. TrEMBL
Match: tr|A0A1S3C070|A0A1S3C070_CUCME (uncharacterized protein LOC103495336 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495336 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 8.6e-90
Identity = 169/197 (85.79%), Postives = 179/197 (90.86%), Query Frame = 0


Query: 1   MALLLSLCL-HPPNLQQNPTAAVPHPTTVGFHEPTTLNSNSKRHFILKTASLCLISLIPK 60
           MA+ LSLCL HPPN  QNPT+AVP PTTV F   +TLNS SKRHFILKTASLCLIS  PK
Sbjct: 1   MAIPLSLCLHHPPNPHQNPTSAVPPPTTVCFPASSTLNSQSKRHFILKTASLCLISFFPK 60

Query: 61  CPVAQSSQISPTSKQGLPGLANTKSWFQFYGDGFSIRVPPQFEDLTEPEDFNAGLSLYGD 120
           CPV QSS+ SPTSK GLP +ANTKSWFQFYGDGFSIRVPPQFEDLTEPED++AGLSLYGD
Sbjct: 61  CPVVQSSENSPTSKPGLPAIANTKSWFQFYGDGFSIRVPPQFEDLTEPEDYSAGLSLYGD 120

Query: 121 KVKTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGGATL 180
           K KTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGG+TL
Sbjct: 121 KAKTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGGSTL 180

Query: 181 FSARTFKIKDDEGFRTY 197
           FSARTFKIK+DEGFR +
Sbjct: 181 FSARTFKIKEDEGFRNF 197

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BLAST of Carg12883 vs. TrEMBL
Match: tr|A0A2P4HCG9|A0A2P4HCG9_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_66736 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 2.3e-82
Identity = 160/224 (71.43%), Postives = 186/224 (83.04%), Query Frame = 0


Query: 1   MALLLSLCLHPPNLQQNP-TAAVPHPTTVGFHEPTTLNSNSKRHFILKTASLCLISLIPK 60
           MA+LLSL  HPPNL   P T   P PT      PTT N++SKR F+LKTASLC+ISL P 
Sbjct: 1   MAILLSLSPHPPNLPHKPITLPTPKPTI-----PTT-NTSSKRLFLLKTASLCIISLTPP 60

Query: 61  CPVAQSS-QISPTSKQGLPGLANTKSWFQFYGDGFSIRVPPQFEDLTEPEDFNAGLSLYG 120
            P+A SS + S   K  L G+ANTKSWFQFYG GF+IRVPPQFED+TEPED+NAGLSLYG
Sbjct: 61  YPIAHSSAEPSQPPKSALLGIANTKSWFQFYGSGFAIRVPPQFEDITEPEDYNAGLSLYG 120

Query: 121 DKVKTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGGAT 180
           DK K KTFAARF SPDGSEVLS+V RP+NQLKITFLEAKD+TD+GSL+EAAKIFVPGG+T
Sbjct: 121 DKAKPKTFAARFSSPDGSEVLSIVIRPSNQLKITFLEAKDVTDLGSLKEAAKIFVPGGST 180

Query: 181 LFSARTFKIKDDEGFRTYYFYEFGKNEEHVALVATVNSGQAFVA 223
           L+SART KIK++EGFRTYYFYEFG++E+HVAL+A VNSG+A +A
Sbjct: 181 LYSARTIKIKEEEGFRTYYFYEFGRDEQHVALMAAVNSGKAIIA 218

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BLAST of Carg12883 vs. TrEMBL
Match: tr|A0A067JI42|A0A067JI42_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_23385 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 2.6e-78
Identity = 155/223 (69.51%), Postives = 177/223 (79.37%), Query Frame = 0


Query: 1   MALLLSLCLHPPNLQQNPTAAVPHPTTVGFHEPTTLNSNSKRHFILKTASLCLISLIPKC 60
           MA+L  L LHPP   QNP   + +      H  T LNS SKR F  KT SL +I L  + 
Sbjct: 1   MAILFFLSLHPPKPLQNPNTIIFNARK---HTCTFLNSVSKREFFFKTTSLGVIYLTTQN 60

Query: 61  PVAQS-SQISPTSKQGLPGLANTKSWFQFYGDGFSIRVPPQFEDLTEPEDFNAGLSLYGD 120
           P+AQS ++ S  SK  L G+ANTKSWFQFYGDGF+IRVPPQFED+ EPED+NAGLSLYGD
Sbjct: 61  PLAQSLAETSSPSKSVLSGIANTKSWFQFYGDGFAIRVPPQFEDIMEPEDYNAGLSLYGD 120

Query: 121 KVKTKTFAARFGSPDGSEVLSVVTRPTNQLKITFLEAKDITDIGSLREAAKIFVPGGATL 180
           K K KT+AARF SPDG EVLSVV RPTNQLKITFLEAKDITD+GSL+EAAKIFVPGG+TL
Sbjct: 121 KAKPKTYAARFASPDGYEVLSVVIRPTNQLKITFLEAKDITDLGSLKEAAKIFVPGGSTL 180

Query: 181 FSARTFKIKDDEGFRTYYFYEFGKNEEHVALVATVNSGQAFVA 223
           FSART KIK+DEGFRTYYFYEFG++E+H ALVA VNSG+A +A
Sbjct: 181 FSARTIKIKEDEGFRTYYFYEFGRDEQHAALVAAVNSGKAIIA 220

The following BLAST results are available for this feature:

BLAST of Carg12883 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946291.1	8.9e-123	100.00	uncharacterized protein LOC111450417 isoform X2 [Cucurbita moschata]	[more]
XP_023521934.1	2.6e-122	99.55	uncharacterized protein LOC111785779 [Cucurbita pepo subsp. pepo] >XP_023521935....	[more]
XP_022999130.1	6.4e-121	99.54	uncharacterized protein LOC111493605 isoform X2 [Cucurbita maxima] >XP_022999131...	[more]
XP_022946289.1	2.4e-120	95.69	uncharacterized protein LOC111450417 isoform X1 [Cucurbita moschata] >XP_0229462...	[more]
XP_022999127.1	1.3e-118	95.61	uncharacterized protein LOC111493605 isoform X1 [Cucurbita maxima] >XP_022999128...	[more]

BLAST of Carg12883 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G27390.1	7.7e-68	57.89	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein	[more]

BLAST of Carg12883 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg12883 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LJH6\|A0A0A0LJH6_CUCSA	1.1e-105	87.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G020900 PE=4 SV=1	[more]
tr\|A0A1S3C1A2\|A0A1S3C1A2_CUCME	1.9e-105	87.44	uncharacterized protein LOC103495336 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3C070\|A0A1S3C070_CUCME	8.6e-90	85.79	uncharacterized protein LOC103495336 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2P4HCG9\|A0A2P4HCG9_QUESU	2.3e-82	71.43	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_66736 PE=4 SV=1	[more]
tr\|A0A067JI42\|A0A067JI42_JATCU	2.6e-78	69.51	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_23385 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016123	Mog1/PsbP_a/b/a-sand

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12883-RA	Carg12883-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37764	FAMILY NOT NAMED	coord: 1..222
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	SUPERFAMILY	SSF55724	Mog1p/PsbP-like	coord: 84..222

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg12883	Csa2G020900	Cucumber (Chinese Long) v2	carcuB0917
Carg12883	CSPI02G03570	Wild cucumber (PI 183967)	carcpiB0938
Carg12883	CmaCh05G011600	Cucurbita maxima (Rimu)	carcmaB1246
Carg12883	CmoCh05G011710	Cucurbita moschata (Rifu)	carcmoB1216
Carg12883	Cp4.1LG11g09550	Cucurbita pepo (Zucchini)	carcpeB1252
Carg12883	CsGy2G003680	Cucumber (Gy14) v2	carcgybB0890
Carg12883	CsaV3_2G004900	Cucumber (Chinese Long) v3	carcucB0940

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg12883	Silver-seed gourd	carcarB587
Carg12883	Cucumber (Gy14) v1	carcgyB1020
Carg12883	Cucurbita maxima (Rimu)	carcmaB1241
Carg12883	Cucurbita moschata (Rifu)	carcmoB1212
Carg12883	Cucurbita pepo (Zucchini)	carcpeB1256
Carg12883	Bottle gourd (USVL1VR-Ls)	carlsiB822
Carg12883	Melon (DHL92) v3.5.1	carmeB0893
Carg12883	Melon (DHL92) v3.6.1	carmedB0900
Carg12883	Watermelon (Charleston Gray)	carwcgB0883
Carg12883	Watermelon (97103) v1	carwmB0907
Carg12883	Watermelon (97103) v2	carwmbB0946
Carg12883	Watermelon (97103) v2	carwmbB0949