Cp4.1LG11g09290 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG11g09290
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPentatricopeptide repeat-containing protein
LocationCp4.1LG11 : 7801816 .. 7804116 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATAACATTGTGAAAGTTTCACAGGTTAGTTCGCAGTCATCGTGCCAATCGATTGTGGAGCCGTCGATTGCAGCCGTTGATTCTGCTGCACGCGTTGGGGTTCGCCACTGCTGGGCGGAGCCGTGCGACAACCGGTGGTGCGCCGCCAGTAGTGTGGGTGTTGGAGTTGAGAAGAAAATGAAATCGGAGTTCTGTATTTTTTTTCTTCCTCCAATCTGAACTTTCTCTGATTTTGGCTATGCCTTTCTTTTGATGCCGCCATTCCTTCGCTTCCCTTGTTTGCCTCTCAAAACCTTCATTTCAAACACCTCAACATCCTCCACAAAAAATGCCCTATTCAATACTCAACCATTTTTCTCATTTCTCCAAGAATTTCCCCGTGATCTTCTCTCAGTCAAATCCATACACGCTCAGATCATTATCACAAACGCCATATCCGGAGACCAGCGTTTGGTGGCAAAGCTTGTTGCGGCGTACTCAAGCTTGGGTTCTTTGGAGAATGCACGTAAGGTGTTTGATAAAATTCCTCAACCAAAAACTGTTCTCTGCAATGCCATGGTTAATGGGTATCTTCAAAATCAGCATTATAATGAGACCATCGAGCTGTTTAAATTGATGGGTCGATGTCATTTCGAATTTGATAGCTATACTTGTAATTTTGCTCTTAAGGCGTGCATGTTCTTATTGGATTATGAAATGGGCATAGAAGTGATTAGATTAGCTCTCTGTAAGGGGTTAGCTGGTGGTCGGTTTTTGGGAAGTTCGATTTTAAATTTTTTGGTAAAAGCTGGGGATATTATGAATGCACGAATTTTTTTTCATGAAATGGTTGAGAAAGATGTTGTTTGTTGGAATGTGATGATTGGTGGGTTCATGCAGGAAGGCTTGTTTAGTGAAGGCTATAAATTGTTTCTTGATATGCTTTATAATAGAATTGAGCCTAGTGCTGTGACCATGACAAGCTTGGTTCAATCCTGTGGGGAGATGAGGAATTTAGAGTTTGGAAAATGTATTCATAGCTATGTTCTTGGATTTGGAATGAGTAGTGATACAAGGGTGCTTACCTCACTGATTGATATGTATTGTAAAACGGGTGATGTCGTAAGTGCTCGATGGATTTTCGATACAATGCCCTCTAGGAATTTGGTGTCTTGGAATGTTATGATTTCGGGTTATGTTCAAAATGGTTTTCGTGTCGAAACTTTACATCTCTTCCGTATGTTGGTTACGAATGAAGGAGGTTTCGACTCGAATACCGTTGTTAGCCTCCTCCAGCTTTGTTCTCGGACGGCTGATTTGGATGGCGGGAAGATTGTTCATGGTTGCGTCTATCGAAGAGAACTCGATTTGAATTTGATTTTGTCTACTGCAATTGTTGATCTATATGCTAAATGTGGATGTTTGGCCTATGCATATTCTGTTTTTGAAAGAATGAAAACTAAGAATGTGGTATCATGGACTGCCATGCTTGTGGGACTGGCTCAGAATGGGCAAGCTAGAGATGCTTTAAAGCTATTTTCTCAAATGCAAAATGAGAGGGTTACTTTCAATGCTCTCACCTTAGTTAGTTTAGTTCATTGTTGCACGCTCCTCGGCTCGTTGCGTGAAGGGAGAAGTGTTCATGCTGTCTTAATTCGATTTCGTTTTGCATCGGACGTTGTCGCTAAGACAGCCCTCATTGATATGTATGCAAAATGCAGCGAAATCGACTCGGGTGAGAAAGTATTCAACCATGGTTTTACGCCAAAGGATGTGATATTATATAACTCGATGATTTCGGGCTATGGAATGCACGGTCTCGGGCATAAAGCACTGTCTGTCTACCATCAAATGAATCAAGAACTTCAGCCAAATGAGAGCACCTTTGTTTCTCTGCTATCTGCTTGTAGCCATTCAGGCCTAGTGGAGGAAGGGATATCTTTGTTTCGAGATATGGAGAAAGCTCATAACGTAACGCCGACCGATAAACTTTATGCCTGCTTTGTCGATCTTTTAAGTCGAGCAGGTCGCCTTCGGCAAGCTGAGGAAGTGATCAATCAAATGCCTTACAGACCAACCAGTGGCATACTTGAAACTCTGCTGAATGGGTGTCTTTTGCATAAGGACATTGAGTTGGGTGTAAAAATTGCTGACAGATTACTCTCGTTCGAGTCTAGAAATCTGAGCGTCTACGTTAGCTTGTCGAATATATATGCCGAAGCAGGTCAATGGGATACGGTAAACCATCTCCGAGGTCTCATGACCGAGCACGAGCTTAAAAAGATTCCAGGTTATAGCTCAATTGAAGTAAATATTTAG

mRNA sequence

ATGAATAACATTGTGAAAGTTTCACAGGTTAGTTCGCAGTCATCGTGCCAATCGATTGTGGAGCCGTCGATTGCAGCCGTTGATTCTGCTGCACGCGTTGGGGTTCGCCACTGCTGGGCGGAGCCGTGCGACAACCGGTGGTGCGCCGCCAGTAGTGTGGGTGTTGGAGTTGAGAAGAAAATGAAATCGGAGTTCTTCAAATCCATACACGCTCAGATCATTATCACAAACGCCATATCCGGAGACCAGCGTTTGGTGGCAAAGCTTGTTGCGGCGTACTCAAGCTTGGGTTCTTTGGAGAATGCACGTAAGGTGTTTGATAAAATTCCTCAACCAAAAACTGTTCTCTGCAATGCCATGGTTAATGGGTATCTTCAAAATCAGCATTATAATGAGACCATCGAGCTGTTTAAATTGATGGGTCGATGTCATTTCGAATTTGATAGCTATACTTGTAATTTTGCTCTTAAGGCGTGCATGTTCTTATTGGATTATGAAATGGGCATAGAAGTGATTAGATTAGCTCTCTGTAAGGGGTTAGCTGGTGGTCGGTTTTTGGGAAGTTCGATTTTAAATTTTTTGGTAAAAGCTGGGGATATTATGAATGCACGAATTTTTTTTCATGAAATGGTTGAGAAAGATGTTGTTTGTTGGAATGTGATGATTGGTGGGTTCATGCAGGAAGGCTTGTTTAGTGAAGGCTATAAATTGTTTCTTGATATGCTTTATAATAGAATTGAGCCTAGTGCTGTGACCATGACAAGCTTGGTTCAATCCTGTGGGGAGATGAGGAATTTAGAGTTTGGAAAATGGAGAAGTGTTCATGCTGTCTTAATTCGATTTCGTTTTGCATCGGACGTTGTCGCTAAGACAGCCCTCATTGATATGTATGCAAAATGCAGCGAAATCGACTCGGGTGAGAAAGTATTCAACCATGGTTTTACGCCAAAGGATGTGATATTATATAACTCGATGATTTCGGGCTATGGAATGCACGGTCTCGGGCATAAAGCACTGTCTGTCTACCATCAAATGAATCAAGAACTTCAGCCAAATGAGAGCACCTTTGTTTCTCTGCTATCTGCTTGTAGCCATTCAGGCCTAGTGGAGGAAGGGATATCTTTGTTTCGAGATATGGAGAAAGCTCATAACGTAACGCCGACCGATAAACTTTATGCCTGCTTTGTCGATCTTTTAAGTCGAGCAGGTCGCCTTCGGCAAGCTGAGGAAGTGATCAATCAAATGCCTTACAGACCAACCAGTGGCATACTTGAAACTCTGCTGAATGGGTGTCTTTTGCATAAGGACATTGAGTTGGGTGTAAAAATTGCTGACAGATTACTCTCGTTCGAGTCTAGAAATCTGAGCGTCTACGTTAGCTTGTCGAATATATATGCCGAAGCAGGTCAATGGGATACGGTAAACCATCTCCGAGGTCTCATGACCGAGCACGAGCTTAAAAAGATTCCAGGTTATAGCTCAATTGAAGTAAATATTTAG

Coding sequence (CDS)

ATGAATAACATTGTGAAAGTTTCACAGGTTAGTTCGCAGTCATCGTGCCAATCGATTGTGGAGCCGTCGATTGCAGCCGTTGATTCTGCTGCACGCGTTGGGGTTCGCCACTGCTGGGCGGAGCCGTGCGACAACCGGTGGTGCGCCGCCAGTAGTGTGGGTGTTGGAGTTGAGAAGAAAATGAAATCGGAGTTCTTCAAATCCATACACGCTCAGATCATTATCACAAACGCCATATCCGGAGACCAGCGTTTGGTGGCAAAGCTTGTTGCGGCGTACTCAAGCTTGGGTTCTTTGGAGAATGCACGTAAGGTGTTTGATAAAATTCCTCAACCAAAAACTGTTCTCTGCAATGCCATGGTTAATGGGTATCTTCAAAATCAGCATTATAATGAGACCATCGAGCTGTTTAAATTGATGGGTCGATGTCATTTCGAATTTGATAGCTATACTTGTAATTTTGCTCTTAAGGCGTGCATGTTCTTATTGGATTATGAAATGGGCATAGAAGTGATTAGATTAGCTCTCTGTAAGGGGTTAGCTGGTGGTCGGTTTTTGGGAAGTTCGATTTTAAATTTTTTGGTAAAAGCTGGGGATATTATGAATGCACGAATTTTTTTTCATGAAATGGTTGAGAAAGATGTTGTTTGTTGGAATGTGATGATTGGTGGGTTCATGCAGGAAGGCTTGTTTAGTGAAGGCTATAAATTGTTTCTTGATATGCTTTATAATAGAATTGAGCCTAGTGCTGTGACCATGACAAGCTTGGTTCAATCCTGTGGGGAGATGAGGAATTTAGAGTTTGGAAAATGGAGAAGTGTTCATGCTGTCTTAATTCGATTTCGTTTTGCATCGGACGTTGTCGCTAAGACAGCCCTCATTGATATGTATGCAAAATGCAGCGAAATCGACTCGGGTGAGAAAGTATTCAACCATGGTTTTACGCCAAAGGATGTGATATTATATAACTCGATGATTTCGGGCTATGGAATGCACGGTCTCGGGCATAAAGCACTGTCTGTCTACCATCAAATGAATCAAGAACTTCAGCCAAATGAGAGCACCTTTGTTTCTCTGCTATCTGCTTGTAGCCATTCAGGCCTAGTGGAGGAAGGGATATCTTTGTTTCGAGATATGGAGAAAGCTCATAACGTAACGCCGACCGATAAACTTTATGCCTGCTTTGTCGATCTTTTAAGTCGAGCAGGTCGCCTTCGGCAAGCTGAGGAAGTGATCAATCAAATGCCTTACAGACCAACCAGTGGCATACTTGAAACTCTGCTGAATGGGTGTCTTTTGCATAAGGACATTGAGTTGGGTGTAAAAATTGCTGACAGATTACTCTCGTTCGAGTCTAGAAATCTGAGCGTCTACGTTAGCTTGTCGAATATATATGCCGAAGCAGGTCAATGGGATACGGTAAACCATCTCCGAGGTCTCATGACCGAGCACGAGCTTAAAAAGATTCCAGGTTATAGCTCAATTGAAGTAAATATTTAG

Protein sequence

MNNIVKVSQVSSQSSCQSIVEPSIAAVDSAARVGVRHCWAEPCDNRWCAASSVGVGVEKKMKSEFFKSIHAQIIITNAISGDQRLVAKLVAAYSSLGSLENARKVFDKIPQPKTVLCNAMVNGYLQNQHYNETIELFKLMGRCHFEFDSYTCNFALKACMFLLDYEMGIEVIRLALCKGLAGGRFLGSSILNFLVKAGDIMNARIFFHEMVEKDVVCWNVMIGGFMQEGLFSEGYKLFLDMLYNRIEPSAVTMTSLVQSCGEMRNLEFGKWRSVHAVLIRFRFASDVVAKTALIDMYAKCSEIDSGEKVFNHGFTPKDVILYNSMISGYGMHGLGHKALSVYHQMNQELQPNESTFVSLLSACSHSGLVEEGISLFRDMEKAHNVTPTDKLYACFVDLLSRAGRLRQAEEVINQMPYRPTSGILETLLNGCLLHKDIELGVKIADRLLSFESRNLSVYVSLSNIYAEAGQWDTVNHLRGLMTEHELKKIPGYSSIEVNI
Homology
[Close]
BLAST of Cp4.1LG11g09290 vs. Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 4.5e-75
Identity = 154/435 (35.40%), Postives = 242/435 (55.63%), Query Frame = 1 

Query: 65  FFKSIHAQIIITNAISGDQRLVAKLVAAYSSLGSLENARKVFDKIPQPKTVLCNAMVNGY 124
           F KS H  ++   A          L+  Y+S G +ENA+K+FD+IP    V  NAM++GY
Sbjct: 192 FDKSPHRDVVSYTA----------LIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGY 251

Query: 125 LQNQHYNETIELFKLMGRCHFEFDSYTCNFALKACMFLLDYEMGIEVIRLALCKGLAGGR 184
            +  +Y E +ELFK M + +   D  T    + AC      E+G +V       G     
Sbjct: 252 AETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNL 311

Query: 185 FLGSSILNFLVKAGDIMNARIFFHEMVEKDVVCWNVMIGGFMQEGLFSEGYKLFLDMLYN 244
            + +++++   K G++  A   F  +  KDV+ WN +IGG+    L+ E   LF +ML +
Sbjct: 312 KIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRS 371

Query: 245 RIEPSAVTMTSLVQSCGEMRNLEFGKWRSVHAVLIRFRFASDVVAKTALIDMYAKCSEID 304
              P+ VTM S++ +C  +  ++ G+W  V+         +    +T+LIDMYAKC +I+
Sbjct: 372 GETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIE 431

Query: 305 SGEKVFNHGFTPKDVILYNSMISGYGMHGLGHKALSVYHQMNQ-ELQPNESTFVSLLSAC 364
           +  +VFN     K +  +N+MI G+ MHG    +  ++ +M +  +QP++ TFV LLSAC
Sbjct: 432 AAHQVFN-SILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSAC 491

Query: 365 SHSGLVEEGISLFRDMEKAHNVTPTDKLYACFVDLLSRAGRLRQAEEVINQMPYRPTSGI 424
           SHSG+++ G  +FR M + + +TP  + Y C +DLL  +G  ++AEE+IN M   P   I
Sbjct: 492 SHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVI 551

Query: 425 LETLLNGCLLHKDIELGVKIADRLLSFESRNLSVYVSLSNIYAEAGQWDTVNHLRGLMTE 484
             +LL  C +H ++ELG   A+ L+  E  N   YV LSNIYA AG+W+ V   R L+ +
Sbjct: 552 WCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLND 611

Query: 485 HELKKIPGYSSIEVN 499
             +KK+PG SSIE++
Sbjct: 612 KGMKKVPGCSSIEID 615

[Close]
BLAST of Cp4.1LG11g09290 vs. Swiss-Prot
Match: PPR14_ARATH (Pentatricopeptide repeat-containing protein At1g06140, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E61 PE=2 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 3.8e-74
Identity = 162/427 (37.94%), Postives = 244/427 (57.14%), Query Frame = 1 

Query: 73  IIITNAISGDQRLVAKLVAAYSSLGSLENARKVFDKIPQPKTVLCNAMVNGYLQNQHYNE 132
           + + N +  D  +   LV  Y+ LG++E+A+KVFD+IP   +VL   ++ GYL+     E
Sbjct: 134 LAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYLKYSKDPE 193

Query: 133 TIELFKLMGRCHFEFDSYTCNFALKACMFLLDYEMGIEVIRLALCKGLAG-GRFLGSSIL 192
              LF LM       D+ T    +KAC  +   ++G  V  +++ +       +L +SI+
Sbjct: 194 VFRLFCLMRDTGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQASII 253

Query: 193 NFLVKAGDIMNARIFFHEMVEKDVVCWNVMIGGFMQEGLFSEGYKLFLDMLYNRIEPSAV 252
           +  VK   + NAR  F   V+++VV W  +I GF +     E + LF  ML   I P+  
Sbjct: 254 DMYVKCRLLDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQC 313

Query: 253 TMTSLVQSCGEMRNLEFGKWRSVHAVLIRFRFASDVVAKTALIDMYAKCSEIDSGEKVFN 312
           T+ +++ SC  + +L  GK  SVH  +IR     D V  T+ IDMYA+C  I     VF+
Sbjct: 314 TLAAILVSCSSLGSLRHGK--SVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFD 373

Query: 313 HGFTPKDVILYNSMISGYGMHGLGHKALSVYHQM-NQELQPNESTFVSLLSACSHSGLVE 372
                ++VI ++SMI+ +G++GL  +AL  +H+M +Q + PN  TFVSLLSACSHSG V+
Sbjct: 374 M-MPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVK 433

Query: 373 EGISLFRDMEKAHNVTPTDKLYACFVDLLSRAGRLRQAEEVINQMPYRPTSGILETLLNG 432
           EG   F  M + + V P ++ YAC VDLL RAG + +A+  I+ MP +P +     LL+ 
Sbjct: 434 EGWKQFESMTRDYGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSA 493

Query: 433 CLLHKDIELGVKIADRLLSFESRNLSVYVSLSNIYAEAGQWDTVNHLRGLMTEHELKKIP 492
           C +HK+++L  +IA++LLS E    SVYV LSNIYA+AG W+ VN +R  M     +K  
Sbjct: 494 CRIHKEVDLAGEIAEKLLSMEPEKSSVYVLLSNIYADAGMWEMVNCVRRKMGIKGYRKHV 553

Query: 493 GYSSIEV 498
           G S+ EV
Sbjct: 554 GQSATEV 557

[Close]
BLAST of Cp4.1LG11g09290 vs. Swiss-Prot
Match: PP333_ARATH (Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 7.4e-70
Identity = 147/450 (32.67%), Postives = 248/450 (55.11%), Query Frame = 1 

Query: 51  SSVGVGVEKKMKSEFFKSIHAQIIITNAISGDQRLVAKLVAAYSSLGSLENARKVFDKIP 110
           SS+   V K    E+ K IH  I+  ++IS D  L + L+ AY     +  A+ +F +  
Sbjct: 344 SSLLPSVSKFENLEYCKQIHCYIM-RHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCN 403

Query: 111 QPKTVLCNAMVNGYLQNQHYNETIELFKLMGRCHFEFDSYTCNFALKACMFLLDYEMGIE 170
               V+  AM++GYL N  Y +++E+F+ + +     +  T    L     LL  ++G E
Sbjct: 404 SVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRE 463

Query: 171 VIRLALCKGLAGGRFLGSSILNFLVKAGDIMNARIFFHEMVEKDVVCWNVMIGGFMQEGL 230
           +    + KG      +G ++++   K G +  A   F  + ++D+V WN MI    Q   
Sbjct: 464 LHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDN 523

Query: 231 FSEGYKLFLDMLYNRIEPSAVTMTSLVQSCGEMRNLEFGKWRSVHAVLIRFRFASDVVAK 290
            S    +F  M  + I    V++++ + +C  + +  FGK  ++H  +I+   ASDV ++
Sbjct: 524 PSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGK--AIHGFMIKHSLASDVYSE 583

Query: 291 TALIDMYAKCSEIDSGEKVFNHGFTPKDVILYNSMISGYGMHGLGHKALSVYHQMNQE-- 350
           + LIDMYAKC  + +   VF      K+++ +NS+I+  G HG    +L ++H+M ++  
Sbjct: 584 STLIDMYAKCGNLKAAMNVFKT-MKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSG 643

Query: 351 LQPNESTFVSLLSACSHSGLVEEGISLFRDMEKAHNVTPTDKLYACFVDLLSRAGRLRQA 410
           ++P++ TF+ ++S+C H G V+EG+  FR M + + + P  + YAC VDL  RAGRL +A
Sbjct: 644 IRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEA 703

Query: 411 EEVINQMPYRPTSGILETLLNGCLLHKDIELGVKIADRLLSFESRNLSVYVSLSNIYAEA 470
            E +  MP+ P +G+  TLL  C LHK++EL    + +L+  +  N   YV +SN +A A
Sbjct: 704 YETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANA 763

Query: 471 GQWDTVNHLRGLMTEHELKKIPGYSSIEVN 499
            +W++V  +R LM E E++KIPGYS IE+N
Sbjct: 764 REWESVTKVRSLMKEREVQKIPGYSWIEIN 789

[Close]
BLAST of Cp4.1LG11g09290 vs. Swiss-Prot
Match: PP219_ARATH (Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 6.3e-69
Identity = 143/426 (33.57%), Postives = 228/426 (53.52%), Query Frame = 1 

Query: 73  IIITNAISGDQRLVAKLVAAYSSLGSLENARKVFDKIPQPKTVLCNAMVNGYLQNQHYNE 132
           +++    + D   +  L++ YS  G L +A K+FD+IP    V   A+ +GY  +  + E
Sbjct: 136 LVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHRE 195

Query: 133 TIELFKLMGRCHFEFDSYTCNFALKACMFLLDYEMGIEVIRLALCKGLAGGRFLGSSILN 192
            I+LFK M     + DSY     L AC+ + D + G  +++      +    F+ ++++N
Sbjct: 196 AIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVN 255

Query: 193 FLVKAGDIMNARIFFHEMVEKDVVCWNVMIGGFMQEGLFSEGYKLFLDMLYNRIEPSAVT 252
              K G +  AR  F  MVEKD+V W+ MI G+       EG +LFL ML   ++P   +
Sbjct: 256 LYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFS 315

Query: 253 MTSLVQSCGEMRNLEFGKWRSVHAVLIRFRFASDVVAKTALIDMYAKCSEIDSGEKVFNH 312
           +   + SC  +  L+ G+W    +++ R  F +++    ALIDMYAKC  +  G +VF  
Sbjct: 316 IVGFLSSCASLGALDLGEWGI--SLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKE 375

Query: 313 GFTPKDVILYNSMISGYGMHGLGHKALSVYHQMNQ-ELQPNESTFVSLLSACSHSGLVEE 372
               KD+++ N+ ISG   +G    + +V+ Q  +  + P+ STF+ LL  C H+GL+++
Sbjct: 376 -MKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQD 435

Query: 373 GISLFRDMEKAHNVTPTDKLYACFVDLLSRAGRLRQAEEVINQMPYRPTSGILETLLNGC 432
           G+  F  +   + +  T + Y C VDL  RAG L  A  +I  MP RP + +   LL+GC
Sbjct: 436 GLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGC 495

Query: 433 LLHKDIELGVKIADRLLSFESRNLSVYVSLSNIYAEAGQWDTVNHLRGLMTEHELKKIPG 492
            L KD +L   +   L++ E  N   YV LSNIY+  G+WD    +R +M +  +KKIPG
Sbjct: 496 RLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPG 555

Query: 493 YSSIEV 498
           YS IE+
Sbjct: 556 YSWIEL 558

[Close]
BLAST of Cp4.1LG11g09290 vs. Swiss-Prot
Match: PP265_ARATH (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 3.5e-67
Identity = 148/431 (34.34%), Postives = 237/431 (54.99%), Query Frame = 1 

Query: 74  IITNAISGDQRLVAKLVAAYSSLGSLENARKVFDKIPQPKTVLCNAMVNGYLQNQHYNET 133
           I+ N    D  L  KL+  YS LGS++ ARKVFDK  +    + NA+        H  E 
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162

Query: 134 IELFKLMGRCHFEFDSYTCNFALKACMF---LLDYEM-GIEVIRLALCKGLAGGRFLGSS 193
           + L+  M R   E D +T  + LKAC+     +++ M G E+      +G +   ++ ++
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTT 222

Query: 194 ILNFLVKAGDIMNARIFFHEMVEKDVVCWNVMIGGFMQEGLFSEGYKLFLDMLYNRIE-- 253
           +++   + G +  A   F  M  ++VV W+ MI  + + G   E  + F +M+    +  
Sbjct: 223 LVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSS 282

Query: 254 PSAVTMTSLVQSCGEMRNLEFGKWRSVHAVLIRFRFASDVVAKTALIDMYAKCSEIDSGE 313
           P++VTM S++Q+C  +  LE GK   +H  ++R    S +   +AL+ MY +C +++ G+
Sbjct: 283 PNSVTMVSVLQACASLAALEQGKL--IHGYILRRGLDSILPVISALVTMYGRCGKLEVGQ 342

Query: 314 KVFNHGFTPKDVILYNSMISGYGMHGLGHKALSVYHQMNQE-LQPNESTFVSLLSACSHS 373
           +VF+     +DV+ +NS+IS YG+HG G KA+ ++ +M      P   TFVS+L ACSH 
Sbjct: 343 RVFDR-MHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHE 402

Query: 374 GLVEEGISLFRDMEKAHNVTPTDKLYACFVDLLSRAGRLRQAEEVINQMPYRPTSGILET 433
           GLVEEG  LF  M + H + P  + YAC VDLL RA RL +A +++  M   P   +  +
Sbjct: 403 GLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGS 462

Query: 434 LLNGCLLHKDIELGVKIADRLLSFESRNLSVYVSLSNIYAEAGQWDTVNHLRGLMTEHEL 493
           LL  C +H ++EL  + + RL + E +N   YV L++IYAEA  WD V  ++ L+    L
Sbjct: 463 LLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGL 522

Query: 494 KKIPGYSSIEV 498
           +K+PG   +EV
Sbjct: 523 QKLPGRCWMEV 530

[Close]
BLAST of Cp4.1LG11g09290 vs. TrEMBL
Match: A0A0A0LYM5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573630 PE=4 SV=1)

HSP 1 Score: 458.4 bits (1178), Expect = 1.1e-125
Identity = 244/433 (56.35%), Postives = 302/433 (69.75%), Query Frame = 1 

Query: 65  FFKSIHAQIIITNAISGDQRLVAKLVAAYSSLGSLENARKVFDKIPQPKTVLCNAMVNGY 124
           F K +H   ++   +S D R++  L+  Y   G +E+AR +F+ +P    V  N M++GY
Sbjct: 149 FGKCMHG-FVLGFGMSRDTRVLTTLIDMYCKSGDVESARWIFENMPSRNLVSWNVMISGY 208

Query: 125 LQNQHYNETIELFKLMGRCHFEFDSYTCNFALKACMFLLDYEMGIEVIRLALCKGLAGGR 184
           +QN    ET+ LF+ +      FDS T    ++ C    D + G  +      +GL    
Sbjct: 209 VQNGLLVETLRLFQKLIMDDVGFDSGTVVSLIQLCSRTADLDGGKILHGFIYRRGLDLNL 268

Query: 185 FLGSSILNFLVKAGDIMNARIFFHEMVEKDVVCWNVMIGGFMQEGLFSEGYKLFLDMLYN 244
            L ++I++   K G +  A   F  M  K+V+ W  M+ G  Q G   +  KLF  M   
Sbjct: 269 VLPTAIVDLYAKCGSLAYASSVFERMKNKNVISWTAMLVGLAQNGHARDALKLFDQMQNE 328

Query: 245 RIEPSAVTMTSLVQSCGEMRNLEFGKWRSVHAVLIRFRFASDVVAKTALIDMYAKCSEID 304
           R+  +A+T+ SLV  C  +  L  G  RSVHA L RF FAS+VV  TALIDMYAKCS+I+
Sbjct: 329 RVTFNALTLVSLVYCCTLLGLLREG--RSVHATLTRFHFASEVVVMTALIDMYAKCSKIN 388

Query: 305 SGEKVFNHGFTPKDVILYNSMISGYGMHGLGHKALSVYHQMNQE-LQPNESTFVSLLSAC 364
           S E VF +G TPKDVILYNSMISGYGMHGLGHKAL VYH+MN+E LQPNESTFVSLLSAC
Sbjct: 389 SAEMVFKYGLTPKDVILYNSMISGYGMHGLGHKALCVYHRMNREGLQPNESTFVSLLSAC 448

Query: 365 SHSGLVEEGISLFRDMEKAHNVTPTDKLYACFVDLLSRAGRLRQAEEVINQMPYRPTSGI 424
           SHSGLVEEGI+LF++M K HN TPTDKLYAC VDLLSRAGRLRQAEE+INQMP+ PTSGI
Sbjct: 449 SHSGLVEEGIALFQNMVKDHNTTPTDKLYACIVDLLSRAGRLRQAEELINQMPFTPTSGI 508

Query: 425 LETLLNGCLLHKDIELGVKIADRLLSFESRNLSVYVSLSNIYAEAGQWDTVNHLRGLMTE 484
           LETLLNGCLLHKDIELGVK+ADRLLS ESRN S+Y++LSNIYA+A +WD+V ++RGLM E
Sbjct: 509 LETLLNGCLLHKDIELGVKLADRLLSLESRNPSIYITLSNIYAKASRWDSVKYVRGLMME 568

Query: 485 HELKKIPGYSSIE 497
            E+KKIPGYSSIE
Sbjct: 569 QEIKKIPGYSSIE 578

[Close]
BLAST of Cp4.1LG11g09290 vs. TrEMBL
Match: A0A0B2SD75_GLYSO (Putative pentatricopeptide repeat-containing protein OS=Glycine soja GN=glysoja_007570 PE=4 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 3.9e-110
Identity = 208/423 (49.17%), Postives = 287/423 (67.85%), Query Frame = 1 

Query: 105 VFDKIPQPKTVLCNAMVNGYLQNQHYNETIELFKLMGRCHFEFDSYTCNFALKACMFLLD 164
           +FD+   P+T +CNAM+ G+L+NQ + E  +LF++MG C+ E D+YTC F+LKAC  LLD
Sbjct: 1   MFDQCSLPETAVCNAMMAGFLRNQQHTEVPKLFRMMGSCNIEIDTYTCMFSLKACASLLD 60

Query: 165 YEMGIEVIRLALCKGLAGGRFLGSSILNFLVKAGDIMNARIFFHEMVEKDVVCWNVMIGG 224
            E+G+E++R A+ KG     ++GSS++NFLVK G + +A+  F  M EKD VCWN +IGG
Sbjct: 61  DEIGMEIVRTAVRKGFRLHPYVGSSMVNFLVKCGYLDDAQKVFDGMPEKDAVCWNSIIGG 120

Query: 225 FMQEGLFSEGYKLFLDMLYNRIEPSAVTMTSLVQSCGEMRNLEFG--------------- 284
           ++++GLF+E  ++F +M+   + PS VTM S +++CGE    + G               
Sbjct: 121 YVKKGLFTEAIQMFPEMIGGGLRPSPVTMVSSLKACGESGLKKVGMCAHGCVLALGMGND 180

Query: 285 ------------KWRSVHAVLIRFRFAS---DVVAKTALIDMYAKCSEIDSGEKVFNHGF 344
                       K RS HA      +     D V  +ALIDMYAKC +I S EK+FN+GF
Sbjct: 181 SCACCAHLGSLKKGRSAHA---HLIWHGYAFDAVITSALIDMYAKCGKIHSAEKLFNNGF 240

Query: 345 TPKDVILYNSMISGYGMHGLGHKALSVYHQMNQE-LQPNESTFVSLLSACSHSGLVEEGI 404
             KDVIL NSMI  YG++  GH AL VY +M +E L PN++TFVSLL+ACSHSGLVEEG 
Sbjct: 241 HLKDVILCNSMIMSYGIYAHGHYALGVYGRMIEERLNPNQTTFVSLLTACSHSGLVEEGK 300

Query: 405 SLFRDMEKAHNVTPTDKLYACFVDLLSRAGRLRQAEEVINQMPYRPTSGILETLLNGCLL 464
           +LF  ME+ HN+ P DK YAC VDLLSRAGRL +A+ ++ QMP++P++ +LE LL+GC  
Sbjct: 301 ALFHCMERDHNIKPQDKHYACLVDLLSRAGRLEEADALVKQMPFQPSTDVLEALLSGCRT 360

Query: 465 HKDIELGVKIADRLLSFESRNLSVYVSLSNIYAEAGQWDTVNHLRGLMTEHELKKIPGYS 497
           HK+  +G++IADRL+S +  N  +YV LSNIYAEA +W++VN++RGLM    +KKIPGYS
Sbjct: 361 HKNTNMGIQIADRLISLDYLNSGIYVMLSNIYAEARKWESVNYIRGLMRMQGMKKIPGYS 420

[Close]
BLAST of Cp4.1LG11g09290 vs. TrEMBL
Match: A0A0L9TN84_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g155600 PE=4 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 3.0e-102
Identity = 197/426 (46.24%), Postives = 280/426 (65.73%), Query Frame = 1 

Query: 73  IIITNAISGDQRLVAKLVAAYSSLGSLENARKVFDKIPQPKTVLCNAMVNGYLQNQHYNE 132
           ++I   +  D  ++  LV  YS+LG  + A  VF+ +     +  NAM++GY+QN    E
Sbjct: 247 VLIALGMGNDVFVLTSLVDMYSNLGDTDIAALVFNGMFNRSLISWNAMISGYIQNGLIPE 306

Query: 133 TIELFKLMGRCHFEFDSYTCNFALKACMFLLDYEMGIEVIRLALCKGLAGGRFLGSSILN 192
           +  LF+ + +    FDS T    ++ C    D E G  +    + KG+     L +SI++
Sbjct: 307 SFALFRRLIQSGSGFDSGTLVSLIRGCSQTSDLENGRILHACIIRKGIESNIVLSTSIVD 366

Query: 193 FLVKAGDIMNARIFFHEMVEKDVVCWNVMIGGFMQEGLFSEGYKLFLDMLYNRIEPSAVT 252
              K G I  A I F  M +++V+ W  M+ G  Q G   +  KLF  M   ++  ++VT
Sbjct: 367 MYSKCGAIKLATIVFGRMEKRNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVPANSVT 426

Query: 253 MTSLVQSCGEMRNLEFGKWRSVHAVLIRFRFASDVVAKTALIDMYAKCSEIDSGEKVFNH 312
           + SLV  C  + +L+ G  RSVHA LIR  +A D V  +AL+DMYAKC +I S EK+FN+
Sbjct: 427 LVSLVHCCAHLGSLKKG--RSVHAYLIRHGYAFDAVNMSALLDMYAKCGKIRSAEKLFNN 486

Query: 313 GFTPKDVILYNSMISGYGMHGLGHKALSVYHQMNQE-LQPNESTFVSLLSACSHSGLVEE 372
           GF  KDVIL N+MI GYGMHGLGH ALS+Y +M +E L+P+++TF+SLL+ACSHSGLVEE
Sbjct: 487 GFHLKDVILCNTMIMGYGMHGLGHYALSLYDRMIEESLKPSQTTFISLLTACSHSGLVEE 546

Query: 373 GISLFRDMEKAHNVTPTDKLYACFVDLLSRAGRLRQAEEVINQMPYRPTSGILETLLNGC 432
           G +LF  ME+ HN+ P DK YAC VDLLSRAGRL++A+ ++ QMP++P++ + E LL+GC
Sbjct: 547 GKALFNCMERDHNIKPQDKHYACVVDLLSRAGRLKEADALVKQMPFQPSTDVFEALLSGC 606

Query: 433 LLHKDIELGVKIADRLLSFESRNLSVYVSLSNIYAEAGQWDTVNHLRGLMTEHELKKIPG 492
             HK+I +G++IADRL+S +  N  +YV LSNIYAEAG+W++VN++RGLM    LKK+PG
Sbjct: 607 RTHKNINMGIQIADRLISLDYLNSGIYVMLSNIYAEAGRWESVNYIRGLMRMQGLKKVPG 666

Query: 493 YSSIEV 498
           YS IE+
Sbjct: 667 YSLIEI 670

[Close]
BLAST of Cp4.1LG11g09290 vs. TrEMBL
Match: V7CHX8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G092700g PE=4 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 9.7e-101
Identity = 198/425 (46.59%), Postives = 276/425 (64.94%), Query Frame = 1 

Query: 74  IITNAISGDQRLVAKLVAAYSSLGSLENARKVFDKIPQPKTVLCNAMVNGYLQNQHYNET 133
           +I   +  D  ++  LV  YS+LG  +NA  VF+ +     +  NAM++GY+QN    E+
Sbjct: 271 VIALGMGNDVFVLTSLVDMYSNLGDTDNAALVFNGMFNRSLISWNAMISGYVQNGLIPES 330

Query: 134 IELFKLMGRCHFEFDSYTCNFALKACMFLLDYEMGIEVIRLALCKGLAGGRFLGSSILNF 193
             LF+ + +    FDS T    ++ C    D + G  +    + KG+     L +SI++ 
Sbjct: 331 FALFRRLVQSGSGFDSGTLVSLMRGCSQTSDLKNGRILHSCIIRKGIESNIVLSTSIVDM 390

Query: 194 LVKAGDIMNARIFFHEMVEKDVVCWNVMIGGFMQEGLFSEGYKLFLDMLYNRIEPSAVTM 253
             K G I  A   F  M +K+V+ W  M+ G  Q G   +  KLF  M   ++  ++VT+
Sbjct: 391 YSKCGAIKLATTVFGRMEKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVLANSVTL 450

Query: 254 TSLVQSCGEMRNLEFGKWRSVHAVLIRFRFASDVVAKTALIDMYAKCSEIDSGEKVFNHG 313
            SLV  C  + +L  G  RSVHA LIR  +A D V  +AL+DMYAKC +I S EK+FN G
Sbjct: 451 VSLVHCCAHLGSLNKG--RSVHAHLIRHGYAFDAVNMSALLDMYAKCGKIRSAEKLFNKG 510

Query: 314 FTPKDVILYNSMISGYGMHGLGHKALSVYHQMNQE-LQPNESTFVSLLSACSHSGLVEEG 373
           F  KDVIL N+MI GYGMHGLGH AL VY +M +E L+PN++TFVSLL+ACSHSGLVEEG
Sbjct: 511 FHLKDVILCNTMIMGYGMHGLGHYALGVYGRMIEERLKPNQTTFVSLLTACSHSGLVEEG 570

Query: 374 ISLFRDMEKAHNVTPTDKLYACFVDLLSRAGRLRQAEEVINQMPYRPTSGILETLLNGCL 433
            +LF  +E+ HN+ P +K YAC VDLLSRAGRL++A+ ++ QMP++P++ +LE LL+GC 
Sbjct: 571 KALFDCIERDHNIKPQEKHYACLVDLLSRAGRLKEADALVKQMPFQPSTDVLEALLSGCR 630

Query: 434 LHKDIELGVKIADRLLSFESRNLSVYVSLSNIYAEAGQWDTVNHLRGLMTEHELKKIPGY 493
            HK+I +G++IADRL+S +  N  +YV LSNIYAEA +W++VN++RGLM    LKK+PGY
Sbjct: 631 THKNINMGIQIADRLISLDYLNSGIYVMLSNIYAEARRWESVNYIRGLMRMQGLKKVPGY 690

Query: 494 SSIEV 498
           S IEV
Sbjct: 691 SLIEV 693

[Close]
BLAST of Cp4.1LG11g09290 vs. TrEMBL
Match: A0A061F2D9_THECC (Pentatricopeptide repeat superfamily protein OS=Theobroma cacao GN=TCM_026441 PE=4 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 6.3e-100
Identity = 194/435 (44.60%), Postives = 277/435 (63.68%), Query Frame = 1 

Query: 64  EFFKSIHAQIIITNAISGDQRLVAKLVAAYSSLGSLENARKVFDKIPQPKTVLCNAMVNG 123
           E  K +H   ++   +  D  ++  LV  YS +G +E+A  +FD IP    V  N M++G
Sbjct: 257 ELGKCVHG-FVLGLGMGSDILVLTALVDMYSKMGEIESAHLLFDSIPAKNLVSWNVMISG 316

Query: 124 YLQNQHYNETIELFKLMGRCHFEFDSYTCNFALKACMFLLDYEMGIEVIRLALCKGLAGG 183
           Y+QN   +++ +LF+ +     +FDS T    L+ C  + D E G  +      +GL   
Sbjct: 317 YVQNCLVSKSFDLFRELVITGGDFDSGTIISLLQCCAQIADLESGKVLHGCIFRRGLDMN 376

Query: 184 RFLGSSILNFLVKAGDIMNARIFFHEMVEKDVVCWNVMIGGFMQEGLFSEGYKLFLDMLY 243
             L ++I++   K G +  A   F  M +++V+ W  M+ G  Q G   +  KLF  M  
Sbjct: 377 LILSTAIVDLYSKCGAVKEATFVFDRMKDRNVITWTAMLVGLAQNGKAEDALKLFNQMQE 436

Query: 244 NRIEPSAVTMTSLVQSCGEMRNLEFGKWRSVHAVLIRFRFASDVVAKTALIDMYAKCSEI 303
             +  +++T+  LV SC  + +L+ G  RSVHA L R  +  DVV +TALIDMYAKC +I
Sbjct: 437 EGVAANSITLVGLVHSCAHLGSLKKG--RSVHAQLFRHGYDFDVVNRTALIDMYAKCGKI 496

Query: 304 DSGEKVFNHGFTPKDVILYNSMISGYGMHGLGHKALSVYHQMNQE-LQPNESTFVSLLSA 363
           +  E+V   G   KDVIL+NSMI+GYGMHG GHKAL ++ +M +E ++P+++TF+SLLSA
Sbjct: 497 NYAERVLRDGSFFKDVILWNSMITGYGMHGQGHKALDIFCRMLEEGVKPSQTTFISLLSA 556

Query: 364 CSHSGLVEEGISLFRDMEKAHNVTPTDKLYACFVDLLSRAGRLRQAEEVINQMPYRPTSG 423
           CSHSGLV +G SLF  ME  HN+ PT+K YAC+VDLLSRAGRL++AE +I QMP++ +  
Sbjct: 557 CSHSGLVNQGRSLFVSMESDHNIRPTEKHYACYVDLLSRAGRLQEAEALIKQMPFQSSGA 616

Query: 424 ILETLLNGCLLHKDIELGVKIADRLLSFESRNLSVYVSLSNIYAEAGQWDTVNHLRGLMT 483
           + E LL+GC  HK+I++G+K AD LLS ++ N  +YV LSNIYAEA +WD V+H+RGLM 
Sbjct: 617 VFEALLSGCRTHKNIDIGIKAADHLLSLDATNPGIYVMLSNIYAEARRWDAVDHIRGLMK 676

Query: 484 EHELKKIPGYSSIEV 498
           +  LKK PGYS IEV
Sbjct: 677 KRGLKKTPGYSLIEV 688

[Close]
BLAST of Cp4.1LG11g09290 vs. TAIR10
Match: AT1G08070.1 (AT1G08070.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 283.5 bits (724), Expect = 2.5e-76
Identity = 154/435 (35.40%), Postives = 242/435 (55.63%), Query Frame = 1 

Query: 65  FFKSIHAQIIITNAISGDQRLVAKLVAAYSSLGSLENARKVFDKIPQPKTVLCNAMVNGY 124
           F KS H  ++   A          L+  Y+S G +ENA+K+FD+IP    V  NAM++GY
Sbjct: 192 FDKSPHRDVVSYTA----------LIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGY 251

Query: 125 LQNQHYNETIELFKLMGRCHFEFDSYTCNFALKACMFLLDYEMGIEVIRLALCKGLAGGR 184
            +  +Y E +ELFK M + +   D  T    + AC      E+G +V       G     
Sbjct: 252 AETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNL 311

Query: 185 FLGSSILNFLVKAGDIMNARIFFHEMVEKDVVCWNVMIGGFMQEGLFSEGYKLFLDMLYN 244
            + +++++   K G++  A   F  +  KDV+ WN +IGG+    L+ E   LF +ML +
Sbjct: 312 KIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRS 371

Query: 245 RIEPSAVTMTSLVQSCGEMRNLEFGKWRSVHAVLIRFRFASDVVAKTALIDMYAKCSEID 304
              P+ VTM S++ +C  +  ++ G+W  V+         +    +T+LIDMYAKC +I+
Sbjct: 372 GETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIE 431

Query: 305 SGEKVFNHGFTPKDVILYNSMISGYGMHGLGHKALSVYHQMNQ-ELQPNESTFVSLLSAC 364
           +  +VFN     K +  +N+MI G+ MHG    +  ++ +M +  +QP++ TFV LLSAC
Sbjct: 432 AAHQVFN-SILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSAC 491

Query: 365 SHSGLVEEGISLFRDMEKAHNVTPTDKLYACFVDLLSRAGRLRQAEEVINQMPYRPTSGI 424
           SHSG+++ G  +FR M + + +TP  + Y C +DLL  +G  ++AEE+IN M   P   I
Sbjct: 492 SHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVI 551

Query: 425 LETLLNGCLLHKDIELGVKIADRLLSFESRNLSVYVSLSNIYAEAGQWDTVNHLRGLMTE 484
             +LL  C +H ++ELG   A+ L+  E  N   YV LSNIYA AG+W+ V   R L+ +
Sbjct: 552 WCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLND 611

Query: 485 HELKKIPGYSSIEVN 499
             +KK+PG SSIE++
Sbjct: 612 KGMKKVPGCSSIEID 615

[Close]
BLAST of Cp4.1LG11g09290 vs. TAIR10
Match: AT1G06140.1 (AT1G06140.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 280.4 bits (716), Expect = 2.1e-75
Identity = 162/427 (37.94%), Postives = 244/427 (57.14%), Query Frame = 1 

Query: 73  IIITNAISGDQRLVAKLVAAYSSLGSLENARKVFDKIPQPKTVLCNAMVNGYLQNQHYNE 132
           + + N +  D  +   LV  Y+ LG++E+A+KVFD+IP   +VL   ++ GYL+     E
Sbjct: 134 LAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYLKYSKDPE 193

Query: 133 TIELFKLMGRCHFEFDSYTCNFALKACMFLLDYEMGIEVIRLALCKGLAG-GRFLGSSIL 192
              LF LM       D+ T    +KAC  +   ++G  V  +++ +       +L +SI+
Sbjct: 194 VFRLFCLMRDTGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQASII 253

Query: 193 NFLVKAGDIMNARIFFHEMVEKDVVCWNVMIGGFMQEGLFSEGYKLFLDMLYNRIEPSAV 252
           +  VK   + NAR  F   V+++VV W  +I GF +     E + LF  ML   I P+  
Sbjct: 254 DMYVKCRLLDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQC 313

Query: 253 TMTSLVQSCGEMRNLEFGKWRSVHAVLIRFRFASDVVAKTALIDMYAKCSEIDSGEKVFN 312
           T+ +++ SC  + +L  GK  SVH  +IR     D V  T+ IDMYA+C  I     VF+
Sbjct: 314 TLAAILVSCSSLGSLRHGK--SVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFD 373

Query: 313 HGFTPKDVILYNSMISGYGMHGLGHKALSVYHQM-NQELQPNESTFVSLLSACSHSGLVE 372
                ++VI ++SMI+ +G++GL  +AL  +H+M +Q + PN  TFVSLLSACSHSG V+
Sbjct: 374 M-MPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVK 433

Query: 373 EGISLFRDMEKAHNVTPTDKLYACFVDLLSRAGRLRQAEEVINQMPYRPTSGILETLLNG 432
           EG   F  M + + V P ++ YAC VDLL RAG + +A+  I+ MP +P +     LL+ 
Sbjct: 434 EGWKQFESMTRDYGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSA 493

Query: 433 CLLHKDIELGVKIADRLLSFESRNLSVYVSLSNIYAEAGQWDTVNHLRGLMTEHELKKIP 492
           C +HK+++L  +IA++LLS E    SVYV LSNIYA+AG W+ VN +R  M     +K  
Sbjct: 494 CRIHKEVDLAGEIAEKLLSMEPEKSSVYVLLSNIYADAGMWEMVNCVRRKMGIKGYRKHV 553

Query: 493 GYSSIEV 498
           G S+ EV
Sbjct: 554 GQSATEV 557

[Close]
BLAST of Cp4.1LG11g09290 vs. TAIR10
Match: AT4G21300.1 (AT4G21300.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 266.2 bits (679), Expect = 4.2e-71
Identity = 147/450 (32.67%), Postives = 248/450 (55.11%), Query Frame = 1 

Query: 51  SSVGVGVEKKMKSEFFKSIHAQIIITNAISGDQRLVAKLVAAYSSLGSLENARKVFDKIP 110
           SS+   V K    E+ K IH  I+  ++IS D  L + L+ AY     +  A+ +F +  
Sbjct: 344 SSLLPSVSKFENLEYCKQIHCYIM-RHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCN 403

Query: 111 QPKTVLCNAMVNGYLQNQHYNETIELFKLMGRCHFEFDSYTCNFALKACMFLLDYEMGIE 170
               V+  AM++GYL N  Y +++E+F+ + +     +  T    L     LL  ++G E
Sbjct: 404 SVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRE 463

Query: 171 VIRLALCKGLAGGRFLGSSILNFLVKAGDIMNARIFFHEMVEKDVVCWNVMIGGFMQEGL 230
           +    + KG      +G ++++   K G +  A   F  + ++D+V WN MI    Q   
Sbjct: 464 LHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDN 523

Query: 231 FSEGYKLFLDMLYNRIEPSAVTMTSLVQSCGEMRNLEFGKWRSVHAVLIRFRFASDVVAK 290
            S    +F  M  + I    V++++ + +C  + +  FGK  ++H  +I+   ASDV ++
Sbjct: 524 PSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGK--AIHGFMIKHSLASDVYSE 583

Query: 291 TALIDMYAKCSEIDSGEKVFNHGFTPKDVILYNSMISGYGMHGLGHKALSVYHQMNQE-- 350
           + LIDMYAKC  + +   VF      K+++ +NS+I+  G HG    +L ++H+M ++  
Sbjct: 584 STLIDMYAKCGNLKAAMNVFKT-MKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSG 643

Query: 351 LQPNESTFVSLLSACSHSGLVEEGISLFRDMEKAHNVTPTDKLYACFVDLLSRAGRLRQA 410
           ++P++ TF+ ++S+C H G V+EG+  FR M + + + P  + YAC VDL  RAGRL +A
Sbjct: 644 IRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEA 703

Query: 411 EEVINQMPYRPTSGILETLLNGCLLHKDIELGVKIADRLLSFESRNLSVYVSLSNIYAEA 470
            E +  MP+ P +G+  TLL  C LHK++EL    + +L+  +  N   YV +SN +A A
Sbjct: 704 YETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANA 763

Query: 471 GQWDTVNHLRGLMTEHELKKIPGYSSIEVN 499
            +W++V  +R LM E E++KIPGYS IE+N
Sbjct: 764 REWESVTKVRSLMKEREVQKIPGYSWIEIN 789

[Close]
BLAST of Cp4.1LG11g09290 vs. TAIR10
Match: AT3G08820.1 (AT3G08820.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 263.1 bits (671), Expect = 3.5e-70
Identity = 143/426 (33.57%), Postives = 228/426 (53.52%), Query Frame = 1 

Query: 73  IIITNAISGDQRLVAKLVAAYSSLGSLENARKVFDKIPQPKTVLCNAMVNGYLQNQHYNE 132
           +++    + D   +  L++ YS  G L +A K+FD+IP    V   A+ +GY  +  + E
Sbjct: 136 LVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHRE 195

Query: 133 TIELFKLMGRCHFEFDSYTCNFALKACMFLLDYEMGIEVIRLALCKGLAGGRFLGSSILN 192
            I+LFK M     + DSY     L AC+ + D + G  +++      +    F+ ++++N
Sbjct: 196 AIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVN 255

Query: 193 FLVKAGDIMNARIFFHEMVEKDVVCWNVMIGGFMQEGLFSEGYKLFLDMLYNRIEPSAVT 252
              K G +  AR  F  MVEKD+V W+ MI G+       EG +LFL ML   ++P   +
Sbjct: 256 LYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFS 315

Query: 253 MTSLVQSCGEMRNLEFGKWRSVHAVLIRFRFASDVVAKTALIDMYAKCSEIDSGEKVFNH 312
           +   + SC  +  L+ G+W    +++ R  F +++    ALIDMYAKC  +  G +VF  
Sbjct: 316 IVGFLSSCASLGALDLGEWGI--SLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKE 375

Query: 313 GFTPKDVILYNSMISGYGMHGLGHKALSVYHQMNQ-ELQPNESTFVSLLSACSHSGLVEE 372
               KD+++ N+ ISG   +G    + +V+ Q  +  + P+ STF+ LL  C H+GL+++
Sbjct: 376 -MKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQD 435

Query: 373 GISLFRDMEKAHNVTPTDKLYACFVDLLSRAGRLRQAEEVINQMPYRPTSGILETLLNGC 432
           G+  F  +   + +  T + Y C VDL  RAG L  A  +I  MP RP + +   LL+GC
Sbjct: 436 GLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGC 495

Query: 433 LLHKDIELGVKIADRLLSFESRNLSVYVSLSNIYAEAGQWDTVNHLRGLMTEHELKKIPG 492
            L KD +L   +   L++ E  N   YV LSNIY+  G+WD    +R +M +  +KKIPG
Sbjct: 496 RLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPG 555

Query: 493 YSSIEV 498
           YS IE+
Sbjct: 556 YSWIEL 558

[Close]
BLAST of Cp4.1LG11g09290 vs. TAIR10
Match: AT2G03380.1 (AT2G03380.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 257.3 bits (656), Expect = 1.9e-68
Identity = 144/424 (33.96%), Postives = 225/424 (53.07%), Query Frame = 1 

Query: 74  IITNAISGDQRLVAKLVAAYSSLGSLENARKVFDKIPQPKTVLCNAMVNGYLQNQHYNET 133
           ++ + I     LV  L+  Y   G + NAR+VF++      V+  AM+ GY  N   NE 
Sbjct: 268 LVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEA 327

Query: 134 IELFKLMGRCHFEFDSYTCNFALKACMFLLDYEMGIEVIRLALCKGLAGGRFLGSSILNF 193
           + LF+ M     + +  T    L  C  + + E+G  V  L++  G+     + +++++ 
Sbjct: 328 LSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGIWDTN-VANALVHM 387

Query: 194 LVKAGDIMNARIFFHEMVEKDVVCWNVMIGGFMQEGLFSEGYKLFLDMLYNRIEPSAVTM 253
             K     +A+  F    EKD+V WN +I GF Q G   E   LF  M    + P+ VT+
Sbjct: 388 YAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTV 447

Query: 254 TSLVQSCGEMRNLEFGKWRSVHAVLIRFRFASDVVAKTALIDMYAKCSEIDSGEKVFNHG 313
            SL  +C  + +L  G     ++V + F  +S V   TAL+D YAKC +  S   +F+  
Sbjct: 448 ASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDT- 507

Query: 314 FTPKDVILYNSMISGYGMHGLGHKALSVYHQMNQELQ-PNESTFVSLLSACSHSGLVEEG 373
              K+ I +++MI GYG  G    +L ++ +M ++ Q PNESTF S+LSAC H+G+V EG
Sbjct: 508 IEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSACGHTGMVNEG 567

Query: 374 ISLFRDMEKAHNVTPTDKLYACFVDLLSRAGRLRQAEEVINQMPYRPTSGILETLLNGCL 433
              F  M K +N TP+ K Y C VD+L+RAG L QA ++I +MP +P        L+GC 
Sbjct: 568 KKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCFGAFLHGCG 627

Query: 434 LHKDIELGVKIADRLLSFESRNLSVYVSLSNIYAEAGQWDTVNHLRGLMTEHELKKIPGY 493
           +H   +LG  +  ++L     + S YV +SN+YA  G+W+    +R LM +  L KI G+
Sbjct: 628 MHSRFDLGEIVIKKMLDLHPDDASYYVLVSNLYASDGRWNQAKEVRNLMKQRGLSKIAGH 687

Query: 494 SSIE 497
           S++E
Sbjct: 688 STME 689

[Close]
BLAST of Cp4.1LG11g09290 vs. NCBI nr
Match: gi|659099713|ref|XP_008450740.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g18750, chloroplastic-like [Cucumis melo])

HSP 1 Score: 464.2 bits (1193), Expect = 3.0e-127
Identity = 246/437 (56.29%), Postives = 306/437 (70.02%), Query Frame = 1 

Query: 64  EFFKSIHAQIIITNAISGDQRLVAKLVAAYSSLGSLENARKVFDKIPQPKTVLCNAMVNG 123
           +F K +H+  ++   +S D R++  L+  Y   G +E+AR +FD +P    V  N M++G
Sbjct: 253 KFGKCMHS-FVLGFGMSSDTRVLTTLIDMYCKSGDVESARWIFDNMPSRNLVSWNVMISG 312

Query: 124 YLQNQHYNETIELFKLMGRCHFEFDSYTCNFALKACMFLLDYEMGIEVIRLALCKGLAGG 183
           Y+QN    ET+ LF+ +      FDS T    ++ C    D + G  +      +GL   
Sbjct: 313 YVQNGLLVETLRLFQKLIMDDVGFDSGTVVSLIQLCSRTADLDGGKILHGCIYRRGLDLN 372

Query: 184 RFLGSSILNFLVKAGDIMNARIFFHEMVEKDVVCWNVMIGGFMQEGLFSEGYKLFLDMLY 243
             L ++I++   K G +  A   F  +  K+V+ W  M+ G  Q G   +  KLF  M  
Sbjct: 373 LVLSTAIVDLYAKCGSLAYASSVFERIKNKNVISWTAMLVGLAQNGHARDALKLFDQMQN 432

Query: 244 NRIEPSAVTMTSLVQSCGEMRNLEFGKWRSVHAVLIRFRFASDVVAKTALIDMYAKCSEI 303
            R+  + +T+ SLV  C  +R L  G  RSVHA L RF FAS+VV  TALIDMYAKCS+I
Sbjct: 433 ERVTFNVLTLVSLVYCCTLLRLLREG--RSVHATLTRFHFASEVVVMTALIDMYAKCSKI 492

Query: 304 DSGEKVFNHGFTPKDVILYNSMISGYGMHGLGHKALSVYHQMNQE-LQPNESTFVSLLSA 363
           +S E VF +G TPKDVILYNSMISGYGMHGLGHKAL VYH+MN+E LQPNESTFVSLLSA
Sbjct: 493 NSAEMVFKYGLTPKDVILYNSMISGYGMHGLGHKALCVYHRMNREGLQPNESTFVSLLSA 552

Query: 364 CSHSGLVEEGISLFRDMEKAHNVTPTDKLYACFVDLLSRAGRLRQAEEVINQMPYRPTSG 423
           CSHSGLVEEGI+LF++M K HN TPTDKLYAC VDLLSRAGRL+QAEE+INQMP+ PTSG
Sbjct: 553 CSHSGLVEEGIALFQNMVKDHNTTPTDKLYACIVDLLSRAGRLQQAEELINQMPFTPTSG 612

Query: 424 ILETLLNGCLLHKDIELGVKIADRLLSFESRNLSVYVSLSNIYAEAGQWDTVNHLRGLMT 483
           ILETLLNGCLLHKDIELGVK+ADRLLS ESRN S+Y++LSNIYA+A +WD+V H+RGLM 
Sbjct: 613 ILETLLNGCLLHKDIELGVKLADRLLSLESRNPSIYITLSNIYAKASRWDSVKHVRGLMM 672

Query: 484 EHELKKIPGYSSIEVNI 500
           E E+KKIPG SSIEVNI
Sbjct: 673 EQEIKKIPGCSSIEVNI 686

[Close]
BLAST of Cp4.1LG11g09290 vs. NCBI nr
Match: gi|778662656|ref|XP_011659934.1| (PREDICTED: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 463.8 bits (1192), Expect = 3.9e-127
Identity = 247/436 (56.65%), Postives = 305/436 (69.95%), Query Frame = 1 

Query: 65  FFKSIHAQIIITNAISGDQRLVAKLVAAYSSLGSLENARKVFDKIPQPKTVLCNAMVNGY 124
           F K +H   ++   +S D R++  L+  Y   G +E+AR +F+ +P    V  N M++GY
Sbjct: 255 FGKCMHG-FVLGFGMSRDTRVLTTLIDMYCKSGDVESARWIFENMPSRNLVSWNVMISGY 314

Query: 125 LQNQHYNETIELFKLMGRCHFEFDSYTCNFALKACMFLLDYEMGIEVIRLALCKGLAGGR 184
           +QN    ET+ LF+ +      FDS T    ++ C    D + G  +      +GL    
Sbjct: 315 VQNGLLVETLRLFQKLIMDDVGFDSGTVVSLIQLCSRTADLDGGKILHGFIYRRGLDLNL 374

Query: 185 FLGSSILNFLVKAGDIMNARIFFHEMVEKDVVCWNVMIGGFMQEGLFSEGYKLFLDMLYN 244
            L ++I++   K G +  A   F  M  K+V+ W  M+ G  Q G   +  KLF  M   
Sbjct: 375 VLPTAIVDLYAKCGSLAYASSVFERMKNKNVISWTAMLVGLAQNGHARDALKLFDQMQNE 434

Query: 245 RIEPSAVTMTSLVQSCGEMRNLEFGKWRSVHAVLIRFRFASDVVAKTALIDMYAKCSEID 304
           R+  +A+T+ SLV  C  +  L  G  RSVHA L RF FAS+VV  TALIDMYAKCS+I+
Sbjct: 435 RVTFNALTLVSLVYCCTLLGLLREG--RSVHATLTRFHFASEVVVMTALIDMYAKCSKIN 494

Query: 305 SGEKVFNHGFTPKDVILYNSMISGYGMHGLGHKALSVYHQMNQE-LQPNESTFVSLLSAC 364
           S E VF +G TPKDVILYNSMISGYGMHGLGHKAL VYH+MN+E LQPNESTFVSLLSAC
Sbjct: 495 SAEMVFKYGLTPKDVILYNSMISGYGMHGLGHKALCVYHRMNREGLQPNESTFVSLLSAC 554

Query: 365 SHSGLVEEGISLFRDMEKAHNVTPTDKLYACFVDLLSRAGRLRQAEEVINQMPYRPTSGI 424
           SHSGLVEEGI+LF++M K HN TPTDKLYAC VDLLSRAGRLRQAEE+INQMP+ PTSGI
Sbjct: 555 SHSGLVEEGIALFQNMVKDHNTTPTDKLYACIVDLLSRAGRLRQAEELINQMPFTPTSGI 614

Query: 425 LETLLNGCLLHKDIELGVKIADRLLSFESRNLSVYVSLSNIYAEAGQWDTVNHLRGLMTE 484
           LETLLNGCLLHKDIELGVK+ADRLLS ESRN S+Y++LSNIYA+A +WD+V ++RGLM E
Sbjct: 615 LETLLNGCLLHKDIELGVKLADRLLSLESRNPSIYITLSNIYAKASRWDSVKYVRGLMME 674

Query: 485 HELKKIPGYSSIEVNI 500
            E+KKIPGYSSIEVNI
Sbjct: 675 QEIKKIPGYSSIEVNI 687

[Close]
BLAST of Cp4.1LG11g09290 vs. NCBI nr
Match: gi|700211048|gb|KGN66144.1| (hypothetical protein Csa_1G573630 [Cucumis sativus])

HSP 1 Score: 458.4 bits (1178), Expect = 1.6e-125
Identity = 244/433 (56.35%), Postives = 302/433 (69.75%), Query Frame = 1 

Query: 65  FFKSIHAQIIITNAISGDQRLVAKLVAAYSSLGSLENARKVFDKIPQPKTVLCNAMVNGY 124
           F K +H   ++   +S D R++  L+  Y   G +E+AR +F+ +P    V  N M++GY
Sbjct: 149 FGKCMHG-FVLGFGMSRDTRVLTTLIDMYCKSGDVESARWIFENMPSRNLVSWNVMISGY 208

Query: 125 LQNQHYNETIELFKLMGRCHFEFDSYTCNFALKACMFLLDYEMGIEVIRLALCKGLAGGR 184
           +QN    ET+ LF+ +      FDS T    ++ C    D + G  +      +GL    
Sbjct: 209 VQNGLLVETLRLFQKLIMDDVGFDSGTVVSLIQLCSRTADLDGGKILHGFIYRRGLDLNL 268

Query: 185 FLGSSILNFLVKAGDIMNARIFFHEMVEKDVVCWNVMIGGFMQEGLFSEGYKLFLDMLYN 244
            L ++I++   K G +  A   F  M  K+V+ W  M+ G  Q G   +  KLF  M   
Sbjct: 269 VLPTAIVDLYAKCGSLAYASSVFERMKNKNVISWTAMLVGLAQNGHARDALKLFDQMQNE 328

Query: 245 RIEPSAVTMTSLVQSCGEMRNLEFGKWRSVHAVLIRFRFASDVVAKTALIDMYAKCSEID 304
           R+  +A+T+ SLV  C  +  L  G  RSVHA L RF FAS+VV  TALIDMYAKCS+I+
Sbjct: 329 RVTFNALTLVSLVYCCTLLGLLREG--RSVHATLTRFHFASEVVVMTALIDMYAKCSKIN 388

Query: 305 SGEKVFNHGFTPKDVILYNSMISGYGMHGLGHKALSVYHQMNQE-LQPNESTFVSLLSAC 364
           S E VF +G TPKDVILYNSMISGYGMHGLGHKAL VYH+MN+E LQPNESTFVSLLSAC
Sbjct: 389 SAEMVFKYGLTPKDVILYNSMISGYGMHGLGHKALCVYHRMNREGLQPNESTFVSLLSAC 448

Query: 365 SHSGLVEEGISLFRDMEKAHNVTPTDKLYACFVDLLSRAGRLRQAEEVINQMPYRPTSGI 424
           SHSGLVEEGI+LF++M K HN TPTDKLYAC VDLLSRAGRLRQAEE+INQMP+ PTSGI
Sbjct: 449 SHSGLVEEGIALFQNMVKDHNTTPTDKLYACIVDLLSRAGRLRQAEELINQMPFTPTSGI 508

Query: 425 LETLLNGCLLHKDIELGVKIADRLLSFESRNLSVYVSLSNIYAEAGQWDTVNHLRGLMTE 484
           LETLLNGCLLHKDIELGVK+ADRLLS ESRN S+Y++LSNIYA+A +WD+V ++RGLM E
Sbjct: 509 LETLLNGCLLHKDIELGVKLADRLLSLESRNPSIYITLSNIYAKASRWDSVKYVRGLMME 568

Query: 485 HELKKIPGYSSIE 497
            E+KKIPGYSSIE
Sbjct: 569 QEIKKIPGYSSIE 578

[Close]
BLAST of Cp4.1LG11g09290 vs. NCBI nr
Match: gi|734425321|gb|KHN43040.1| (Putative pentatricopeptide repeat-containing protein [Glycine soja])

HSP 1 Score: 406.8 bits (1044), Expect = 5.6e-110
Identity = 208/423 (49.17%), Postives = 287/423 (67.85%), Query Frame = 1 

Query: 105 VFDKIPQPKTVLCNAMVNGYLQNQHYNETIELFKLMGRCHFEFDSYTCNFALKACMFLLD 164
           +FD+   P+T +CNAM+ G+L+NQ + E  +LF++MG C+ E D+YTC F+LKAC  LLD
Sbjct: 1   MFDQCSLPETAVCNAMMAGFLRNQQHTEVPKLFRMMGSCNIEIDTYTCMFSLKACASLLD 60

Query: 165 YEMGIEVIRLALCKGLAGGRFLGSSILNFLVKAGDIMNARIFFHEMVEKDVVCWNVMIGG 224
            E+G+E++R A+ KG     ++GSS++NFLVK G + +A+  F  M EKD VCWN +IGG
Sbjct: 61  DEIGMEIVRTAVRKGFRLHPYVGSSMVNFLVKCGYLDDAQKVFDGMPEKDAVCWNSIIGG 120

Query: 225 FMQEGLFSEGYKLFLDMLYNRIEPSAVTMTSLVQSCGEMRNLEFG--------------- 284
           ++++GLF+E  ++F +M+   + PS VTM S +++CGE    + G               
Sbjct: 121 YVKKGLFTEAIQMFPEMIGGGLRPSPVTMVSSLKACGESGLKKVGMCAHGCVLALGMGND 180

Query: 285 ------------KWRSVHAVLIRFRFAS---DVVAKTALIDMYAKCSEIDSGEKVFNHGF 344
                       K RS HA      +     D V  +ALIDMYAKC +I S EK+FN+GF
Sbjct: 181 SCACCAHLGSLKKGRSAHA---HLIWHGYAFDAVITSALIDMYAKCGKIHSAEKLFNNGF 240

Query: 345 TPKDVILYNSMISGYGMHGLGHKALSVYHQMNQE-LQPNESTFVSLLSACSHSGLVEEGI 404
             KDVIL NSMI  YG++  GH AL VY +M +E L PN++TFVSLL+ACSHSGLVEEG 
Sbjct: 241 HLKDVILCNSMIMSYGIYAHGHYALGVYGRMIEERLNPNQTTFVSLLTACSHSGLVEEGK 300

Query: 405 SLFRDMEKAHNVTPTDKLYACFVDLLSRAGRLRQAEEVINQMPYRPTSGILETLLNGCLL 464
           +LF  ME+ HN+ P DK YAC VDLLSRAGRL +A+ ++ QMP++P++ +LE LL+GC  
Sbjct: 301 ALFHCMERDHNIKPQDKHYACLVDLLSRAGRLEEADALVKQMPFQPSTDVLEALLSGCRT 360

Query: 465 HKDIELGVKIADRLLSFESRNLSVYVSLSNIYAEAGQWDTVNHLRGLMTEHELKKIPGYS 497
           HK+  +G++IADRL+S +  N  +YV LSNIYAEA +W++VN++RGLM    +KKIPGYS
Sbjct: 361 HKNTNMGIQIADRLISLDYLNSGIYVMLSNIYAEARKWESVNYIRGLMRMQGMKKIPGYS 420

[Close]
BLAST of Cp4.1LG11g09290 vs. NCBI nr
Match: gi|950998130|ref|XP_014506168.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Vigna radiata var. radiata])

HSP 1 Score: 381.7 bits (979), Expect = 1.9e-102
Identity = 200/431 (46.40%), Postives = 283/431 (65.66%), Query Frame = 1 

Query: 68  SIHAQIIITNAISGDQRLVAKLVAAYSSLGSLENARKVFDKIPQPKTVLCNAMVNGYLQN 127
           S HA ++I   +  D  ++  LV  YS+LG  +NA  VF+ +     +  NAM++GY+QN
Sbjct: 294 SAHA-VLIALGMGNDVFVLTSLVDMYSNLGDTDNAALVFNGMFNRSLISWNAMISGYIQN 353

Query: 128 QHYNETIELFKLMGRCHFEFDSYTCNFALKACMFLLDYEMGIEVIRLALCKGLAGGRFLG 187
               E+  LF+ + +    FDS T    ++ C    D E G  +    + KG+     L 
Sbjct: 354 GLIPESFALFRRLIQSGSGFDSGTLVSLIRGCSQTSDLENGRLLHACIIRKGIESNIVLS 413

Query: 188 SSILNFLVKAGDIMNARIFFHEMVEKDVVCWNVMIGGFMQEGLFSEGYKLFLDMLYNRIE 247
           +SI++   K G I  A   F  M +++V+ W  M+ G  Q G   +  KLF  M   ++ 
Sbjct: 414 TSIVDMYSKCGAIKLATNVFGRMEKRNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVP 473

Query: 248 PSAVTMTSLVQSCGEMRNLEFGKWRSVHAVLIRFRFASDVVAKTALIDMYAKCSEIDSGE 307
            ++VT+ SLV  C  + +L+ G  RSVHA LIR  +A D V  +AL+DMYAKC +I S E
Sbjct: 474 ANSVTLVSLVHCCAHLGSLKKG--RSVHAYLIRHGYAFDAVNMSALLDMYAKCGKIRSAE 533

Query: 308 KVFNHGFTPKDVILYNSMISGYGMHGLGHKALSVYHQMNQE-LQPNESTFVSLLSACSHS 367
           K+FN+GF  KDVIL N+MI GYGMHGLGH AL++Y +M +E L+P+++TFVSLL+ACSHS
Sbjct: 534 KLFNNGFHLKDVILCNTMIMGYGMHGLGHYALALYDRMIEESLKPSQTTFVSLLTACSHS 593

Query: 368 GLVEEGISLFRDMEKAHNVTPTDKLYACFVDLLSRAGRLRQAEEVINQMPYRPTSGILET 427
           GLVEEG +LF  ME+ HN+ P DK YAC VDLLSRAGRL++A+ ++ QMP++P++ + E 
Sbjct: 594 GLVEEGKALFNCMERDHNIKPQDKHYACLVDLLSRAGRLKEADALVKQMPFQPSTDVFEA 653

Query: 428 LLNGCLLHKDIELGVKIADRLLSFESRNLSVYVSLSNIYAEAGQWDTVNHLRGLMTEHEL 487
           LL+GC  HK+I +G++IADRL+S +  N  +YV LSNIYAEAG+W++VN++RGLM    L
Sbjct: 654 LLSGCRTHKNINMGIQIADRLISLDYLNSGIYVMLSNIYAEAGRWESVNYIRGLMRMKGL 713

Query: 488 KKIPGYSSIEV 498
           KK+PGYS IE+
Sbjct: 714 KKVPGYSLIEI 721

The following BLAST results are available for this feature:
BLAST of Cp4.1LG11g09290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PPR21_ARATH4.5e-7535.40Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop... [more]
PPR14_ARATH3.8e-7437.94Pentatricopeptide repeat-containing protein At1g06140, mitochondrial OS=Arabidop... [more]
PP333_ARATH7.4e-7032.67Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN... [more]
PP219_ARATH6.3e-6933.57Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis th... [more]
PP265_ARATH3.5e-6734.34Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidop... [more]
BLAST of Cp4.1LG11g09290 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYM5_CUCSA1.1e-12556.35Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573630 PE=4 SV=1[more]
A0A0B2SD75_GLYSO3.9e-11049.17Putative pentatricopeptide repeat-containing protein OS=Glycine soja GN=glysoja_... [more]
A0A0L9TN84_PHAAN3.0e-10246.24Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g155600 PE=4 SV=1[more]
V7CHX8_PHAVU9.7e-10146.59Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G092700g PE=4 SV=1[more]
A0A061F2D9_THECC6.3e-10044.60Pentatricopeptide repeat superfamily protein OS=Theobroma cacao GN=TCM_026441 PE... [more]
BLAST of Cp4.1LG11g09290 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G08070.12.5e-7635.40 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G06140.12.1e-7537.94 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT4G21300.14.2e-7132.67 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G08820.13.5e-7033.57 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT2G03380.11.9e-6833.96 Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of Cp4.1LG11g09290 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659099713|ref|XP_008450740.1|3.0e-12756.29PREDICTED: pentatricopeptide repeat-containing protein At4g18750, chloroplastic-... [more]
gi|778662656|ref|XP_011659934.1|3.9e-12756.65PREDICTED: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like ... [more]
gi|700211048|gb|KGN66144.1|1.6e-12556.35hypothetical protein Csa_1G573630 [Cucumis sativus][more]
gi|734425321|gb|KHN43040.1|5.6e-11049.17Putative pentatricopeptide repeat-containing protein [Glycine soja][more]
gi|950998130|ref|XP_014506168.1|1.9e-10246.40PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Vigna rad... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g09290.1Cp4.1LG11g09290.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 394..416
score:
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 317..364
score: 1.2E-9coord: 213..260
score: 4.1E-12coord: 112..159
score: 8.
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 321..345
score: 5.8E-6coord: 216..249
score: 1.3E-4coord: 115..148
score: 2.4E-4coord: 355..388
score: 1.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 318..348
score: 9.427coord: 113..147
score: 8.1coord: 388..418
score: 7.092coord: 148..182
score: 5.349coord: 183..213
score: 5.886coord: 454..488
score: 7.07coord: 214..248
score: 10.841coord: 352..382
score: 9.383coord: 286..317
score: 5.36coord: 82..112
score: 6
IPR011990Tetratricopeptide-like helical domainGENE3DG3DSA:1.25.40.10coord: 321..415
score: 3.6E-4coord: 88..150
score: 3.6E-4coord: 448..472
score: 3.
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 64..495
score: 1.6E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG11g09290Cucsa.289130Cucumber (Gy14) v1cgycpeB0766
Cp4.1LG11g09290CmaCh10G010900Cucurbita maxima (Rimu)cmacpeB077
Cp4.1LG11g09290CmoCh10G011660Cucurbita moschata (Rifu)cmocpeB051
Cp4.1LG11g09290Cla011296Watermelon (97103) v1cpewmB103
Cp4.1LG11g09290Csa1G573630Cucumber (Chinese Long) v2cpecuB091
Cp4.1LG11g09290ClCG03G016440Watermelon (Charleston Gray)cpewcgB108
Cp4.1LG11g09290CSPI01G27230Wild cucumber (PI 183967)cpecpiB087
Cp4.1LG11g09290Lsi06G001870Bottle gourd (USVL1VR-Ls)cpelsiB094
Cp4.1LG11g09290MELO3C029311.2Melon (DHL92) v3.6.1cpemedB106
Cp4.1LG11g09290CsaV3_1G039540Cucumber (Chinese Long) v3cpecucB0099
Cp4.1LG11g09290CsGy1G026430Cucumber (Gy14) v2cgybcpeB027
Cp4.1LG11g09290Carg27095Silver-seed gourdcarcpeB1074
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG11g09290Cucumber (Chinese Long) v3cpecucB0100
Cp4.1LG11g09290Cucurbita pepo (Zucchini)cpecpeB001
Cp4.1LG11g09290Cucurbita pepo (Zucchini)cpecpeB139
Cp4.1LG11g09290Cucumber (Gy14) v1cgycpeB0168
Cp4.1LG11g09290Cucurbita maxima (Rimu)cmacpeB171
Cp4.1LG11g09290Cucurbita maxima (Rimu)cmacpeB767
Cp4.1LG11g09290Cucurbita moschata (Rifu)cmocpeB147
Cp4.1LG11g09290Cucurbita moschata (Rifu)cmocpeB721
Cp4.1LG11g09290Wild cucumber (PI 183967)cpecpiB088
Cp4.1LG11g09290Wild cucumber (PI 183967)cpecpiB100
Cp4.1LG11g09290Cucumber (Chinese Long) v2cpecuB092
Cp4.1LG11g09290Bottle gourd (USVL1VR-Ls)cpelsiB095
Cp4.1LG11g09290Watermelon (Charleston Gray)cpewcgB104
Cp4.1LG11g09290Watermelon (97103) v1cpewmB104
Cp4.1LG11g09290Watermelon (97103) v1cpewmB113
Cp4.1LG11g09290Melon (DHL92) v3.5.1cpemeB084
Cp4.1LG11g09290Melon (DHL92) v3.5.1cpemeB085
Cp4.1LG11g09290Melon (DHL92) v3.5.1cpemeB099
Cp4.1LG11g09290Cucumber (Gy14) v2cgybcpeB168
Cp4.1LG11g09290Cucumber (Gy14) v2cgybcpeB028
Cp4.1LG11g09290Melon (DHL92) v3.6.1cpemedB108
Cp4.1LG11g09290Melon (DHL92) v3.6.1cpemedB123
Cp4.1LG11g09290Silver-seed gourdcarcpeB1005
Cp4.1LG11g09290Silver-seed gourdcarcpeB1252