Cp4.1LG11g08040 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG11g08040
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	NADH-ubiquinone oxidoreductase chain 5
Location	Cp4.1LG11 : 6499720 .. 6503279 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGCCCGAGCCGGAGTGTGACCAAGAGAATGTCACAAGCCATCCCTAGAATAAATGGCAACAAACCCTAAAAATGTCCTCCACAAGCAAGGCATGGAGATGGGCATGGGCATGGGGATGGGCATGGGCATGGGCCTGATGCAGAGCCGAACGTAATGGGCAAAGGGGATGAAAAGAGTATGACAAACAAATAAGAACCCAAATCAAGAGGTCCATTACATTTTGATTCAGCACAGTCCACGGAATTGAATGGAATTTGGGGAAGAACAAGAAACGAAGAGGAAGAAGGGCAGAGAGGGAGAGGGGTTGGTTGTAGTAAGAGAAGGTCCACGCAGCGCAACCTCAACCTGAACCACTGCGAATTCAACGCTCATGCTCTCTCTCAATTCCATTTCTCAATTCCTCGTTCCATTCATCTGTGGCTGTGTTAAATTCCCCATTCTTCATCGTCGCCCTTCAGAGAAACCAACCTCTCGGGGCGCAGCCATGATTACTCGATCGAATCTGGTTGAACAGTTGAGAGAATACCAGATTCGATCCAAGCACGACTGGGCTTCCGCCTCCTTCTTCTCCTCTACCTCTAATATTACATCCTCCAGGTATCTCCCATTCATTTCCTACTTCCTTGTTTTACCTACGATTCTCGTTGTTACATGTTCATTCTTTAGATTCTCAATCTTCTGTGTTCGTTCTGTTTCCTTTTTATTGTTTGTGATCGATGAACGTGGCTTTTGTGTTCTTTAAAACTCTCAATTACAGGATTCGGATCATTGTAGATTTTCACAGACCGTGTCTCAAATTTGTTTTATTTTGTATGAGATGATTCAATTTGTTTCATTTTTCTGGTCCATGAACTTTGGCATTTGTCAAGATCGTATTACAATTATTGATTGCTTTTGTTCTGGGCATTAATCTTCGATAATCCCTGCGTTGATTAGAAAAGGAAAATAATGGTGATCGTGTGGAATTTGGTACTTGAAACGGGATTTTTGTAAATAAATGTCATGATGCATCATGTCATTCTGTGAGTCTCTTTAGCCGTAGCCTGGGAAATTTCTTGTACTTACAAGTTTAGCATCAAATCCTTACATTATGAGTTTCAGTTGATAGAGTTCTGTTTGTTCATATCTCGCCTTGTTTGCTAATTGCATTGCACTCGAGGAAATTATGTTCGAAATTGTACCAAAGTTATCAGATTCTTGAAGAAAACCCACTTGTATTAATGTTTTAGCATCCAATTATGCATCTCTGGTGAGTGAAGTTCTAAGTTTCAAATCACACAATCTTGAGAATACGTTTTTCATGTTTATAATTGTTAATTTTTCTAGTGTCAATTGGGAGAAGAACTCTTGTATGTTCCTAGCACGATGTTTGTTCAATGTTATTTGTTTGTTTTAGGTTCTAAAGAATGTATGATAGTTAACAGGAACTATAGATGCATTCTTAGCTTGGAACTATAGATGCATTCTTAGCTTGGAACTAGTTCATTATTGATCAAGAGCGTTCACTTAAACCAATCGACACATCTTTTTGTCTTATGTACAACATATCCAAATAGATATCCGTAGGCTTGACTCGGTGCTACTGTCCATAACACATTCTTTATCGTGTTCGGTTTATGTATTCGATTTGCTCTCCTGATGGATCTTATGTACAACATATCCAATAGACATCCGTAGGCTTGACACGGTGCTACTGTTCATAACACATTCTTTATCGTTCGGTATATGCATTCGATTTGCTCTCCTGATAGATCTTATGTACAACATATTCAAATAGATATCTGTAGGCTTGACATGGTGCTACTGTTCATAACACATTCTTTATCGTTCGGTATATGTATTCGATTTGCTCTCCTGATAGATCTTATGTACAACATATTCAAATAGATATTTGTAGGCTTGACATGGTGCTACTGTTCATAACACATTCTTTATCGTTCGGTATATGTATTCGATTTGCTCTCCTGATAGATCTTATGTACAACATATTCAAATAGATATTTGTAGGCTTGACATGGTGCTACTGTTCATAACACATTCTTTATCGTTTGGTATATGTATTCGATTTGCTCTCCTGATAGATCTTATGTACAACATATCCAAATAGATATCTGTAGGCTTGACACGATGCTCATTCACTATCGTTCGGTTTATATATTTGATTTGCTCTCCTGATAGATCCTATGTACAACATATCCAAATAGATATCCGTAGGCTTGACACGGGGCTACCATCCATAACACATTCGTTACCGTTCTGTTTATGTATTTGATTTGCTCTCCTGATAGATCTTATGTACAACACATCCAAATAGATATCCGTAGGCTTGACACGGTGCTACTGTCCATAACACATTCTTTACCGTTCGGTTTAGGTATTTGATTTGCTCTCGTGNTGATGCAGTCTTGATAAATTGTTTATTATTATTATTATTATTTTATTAATTTCAATGTATTCCAGTTTGTTGATATGCAAAGTCATTTAACAACAGCTTTCAAAATGGACGAGAACTCTTCAACACCAACCCCATCTTTNTTGACACGGTGCTACTGTCCATAACACATTCTTTACCGTTCGGTTTAGGTATTTGATTTGCTCTCGTGATAGATCCTATGTACAACATATCCAAATAGATATCCGTAGGCTTGACTCGGTGCTACTGTCCATAACACATTCTTTACCGTTCGGTTTGTGTATTTGATTTGCTCTCCTGATAGATCCTATGTACAACATATCCAAATAGATATCTGTAGGCTTGACACGGTGCTACTGTCCATAACACATTCTTTACCGTTCAGTTTACGTATTTGATTGTCTCTCCTGATAATGTACAACATATCCAAATAGATATCCGTTAGGCTTGACTCGGTGCTACTGTCCATAACACCTTCTTTATCGTTCGGTTTATGTATTCAGTTAGCTCTCCTGATAGCATGAAGATATCCAATATGATATCACTTCTAATGTACATGTTGATTGTTGTATTCTTGATGCAGGGTGGATGTAGTCATTTTTGTAATATGGGAACTCATAATTCTATCCTTCTTGGTGTTTTCGGCGGTCTCTTTATATTTTCGACATATACAGTTGACTTTCGTTTTAGTATGCATAACGATGTTGTTGATTGTATGCATGAAAGTAACAAAGCAAATGAGATTGGCTAGGAAGAATAAAAGNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAATGTTCTAAATGCCCTGAATTATATTCATGAAGAAATAGATTTGGTCCTTTCTCCTCCCCTTCATTCTTTGTTACATTGGGATCTGTAGTCACCAGGGAAGCTGCTTTTATANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGAAAGAGATTGATGTGGTTAGTTTAGAACTCTGTGAATGCTTTCTTATCTGAGAGTTTTGATCATCTTCATAATGTTACTCAGTTTCAGGTAGTTATGATCTTAATCTAACATATTACAAGGAAAGGAAGATGATGATGTTTAGTTTGTTCGAAAAAAT

mRNA sequence

GAGCCCGAGCCGGAGTGTGACCAAGAGAATGTCACAAGCCATCCCTAGAATAAATGGCAACAAACCCTAAAAATGTCCTCCACAAGCAAGGCATGGAGATGGGCATGGGCATGGGGATGGGCATGGGCATGGGCCTGATGCAGAGCCGAACGTAATGGGCAAAGGGGATGAAAAGAGTATGACAAACAAATAAGAACCCAAATCAAGAGGTCCATTACATTTTGATTCAGCACAGTCCACGGAATTGAATGGAATTTGGGGAAGAACAAGAAACGAAGAGGAAGAAGGGCAGAGAGGGAGAGGGGTTGGTTGTAGTAAGAGAAGGTCCACGCAGCGCAACCTCAACCTGAACCACTGCGAATTCAACGCTCATGCTCTCTCTCAATTCCATTTCTCAATTCCTCGTTCCATTCATCTGTGGCTGTGTTAAATTCCCCATTCTTCATCGTCGCCCTTCAGAGAAACCAACCTCTCGGGGCGCAGCCATGATTACTCGATCGAATCTGGTTGAACAGTTGAGAGAATACCAGATTCGATCCAAGCACGACTGGGCTTCCGCCTCCTTCTTCTCCTCTACCTCTAATATTACATCCTCCAGATCTTATGTACAACACATCCAAATAGATATCCGTAGGCTTGACACGGTGCTACTGTCCATAACACATTCTTTACCGTTCGGTTTAGGGTGGATGTAGTCATTTTTGTAATATGGGAACTCATAATTCTATCCTTCTTGGTGTTTTCGGCGGTCTCTTTATATTTTCGACATATACAGTTGACTTTCGTTTTAGTATGCATAACGATGTTGTTGATTGTATGCATGAAAGTAACAAAGCAAATGAGATTGGCTAGGAAGAATAAAAGNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAATGTTCTAAATGCCCTGAATTATATTCATGAAGAAATAGATTTGGTCCTTTCTCCTCCCCTTCATTCTTTGTTACATTGGGATCTGTAGTCACCAGGGAAGCTGCTTTTATANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGAAAGAGATTGATGTGGTTAGTTTAGAACTCTGTGAATGCTTTCTTATCTGAGAGTTTTGATCATCTTCATAATGTTACTCAGTTTCAGGTAGTTATGATCTTAATCTAACATATTACAAGGAAAGGAAGATGATGATGTTTAGTTTGTTCGAAAAAAT

Coding sequence (CDS)

ATGCTCTCTCTCAATTCCATTTCTCAATTCCTCGTTCCATTCATCTGTGGCTGTGTTAAATTCCCCATTCTTCATCGTCGCCCTTCAGAGAAACCAACCTCTCGGGGCGCAGCCATGATTACTCGATCGAATCTGGTTGAACAGTTGAGAGAATACCAGATTCGATCCAAGCACGACTGGGCTTCCGCCTCCTTCTTCTCCTCTACCTCTAATATTACATCCTCCAGATCTTATGTACAACACATCCAAATAGATATCCGTAGGCTTGACACGGTGCTACTGTCCATAACACATTCTTTACCGTTCGGTTTAGGGTGGATGTAG

Protein sequence

MLSLNSISQFLVPFICGCVKFPILHRRPSEKPTSRGAAMITRSNLVEQLREYQIRSKHDWASASFFSSTSNITSSRSYVQHIQIDIRRLDTVLLSITHSLPFGLGWM

Homology

[Close]

BLAST of Cp4.1LG11g08040 vs. TrEMBL
Match: A0A0A0KIH9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G358690 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.0e-20
Identity = 60/82 (73.17%), Postives = 64/82 (78.05%), Query Frame = 1


Query: 1  MLSLNSISQFLVPFICGCVKFPILHRRPS----EKPTSRG--AAMITRSNLVEQLREYQI 60
          MLSLNSISQFLV F+C C    ILH   S    +K  SRG  +AMITRSNLVEQLREYQI
Sbjct: 1  MLSLNSISQFLVSFLCRCFHSSILHLPSSSLEAKKRRSRGSASAMITRSNLVEQLREYQI 60

Query: 61 RSKHDWASASFFSSTSNITSSR 77
          RSKH+WAS SFFSSTSNITSSR
Sbjct: 61 RSKHEWASVSFFSSTSNITSSR 82

[Close]

BLAST of Cp4.1LG11g08040 vs. TrEMBL
Match: A0A0D2TSE9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G189400 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-11
Identity = 46/80 (57.50%), Postives = 52/80 (65.00%), Query Frame = 1


Query: 6  SISQFLVPF---ICGCVKFP---ILHRRPSEKPTSRGA---AMITRSNLVEQLREYQIRS 65
          S++ FL P    +C   KF    I   + S +P  R      MITRSNL EQLREYQIRS
Sbjct: 3  SLALFLAPIRILLCKFSKFNDFLISKHQESTRPKGRERRKETMITRSNLAEQLREYQIRS 62

Query: 66 KHDWASASFFSSTSNITSSR 77
          KHDWAS SFFSSTSN+TSSR
Sbjct: 63 KHDWASVSFFSSTSNLTSSR 82

[Close]

BLAST of Cp4.1LG11g08040 vs. TrEMBL
Match: A0A0B0P7M3_GOSAR (NADH-ubiquinone oxidoreductase chain 5 OS=Gossypium arboreum GN=F383_03918 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.4e-11
Identity = 45/80 (56.25%), Postives = 50/80 (62.50%), Query Frame = 1


Query: 6  SISQFLVPFICGCVKFP------ILHRRPSEKPTSRGA---AMITRSNLVEQLREYQIRS 65
          S++ FL P      KF       I   + S +P  R      MITRSNL EQLREYQIRS
Sbjct: 3  SLALFLAPIRILLCKFSNFNDFLISKHQESTRPKGRERRKETMITRSNLAEQLREYQIRS 62

Query: 66 KHDWASASFFSSTSNITSSR 77
          KHDWAS SFFSSTSN+TSSR
Sbjct: 63 KHDWASVSFFSSTSNLTSSR 82

[Close]

BLAST of Cp4.1LG11g08040 vs. TrEMBL
Match: Q9LMV5_ARATH (F5M15.20 OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.6e-11
Identity = 44/77 (57.14%), Postives = 53/77 (68.83%), Query Frame = 1


Query: 15  IC-GCVKFPILHRRPSEKPTSRGAAMITRSNLVEQLREYQIRSKHDWASASFFSSTSNIT 74
           IC GC     LHR+          AMITRSNL EQLREYQIRSKHDWAS SFFSSTSN +
Sbjct: 73  ICFGCEIGESLHRK----------AMITRSNLAEQLREYQIRSKHDWASVSFFSSTSNFS 132

Query: 75  SSRSY-VQHIQIDIRRL 90
           SSR + V ++ +++ +L
Sbjct: 133 SSREFGVGYVNLNMWKL 139

[Close]

BLAST of Cp4.1LG11g08040 vs. TrEMBL
Match: W9RN34_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011673 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.8e-10
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 1


Query: 39 MITRSNLVEQLREYQIRSKHDWASASFFSSTSNITSSR 77
          MITRSNL EQLREYQIRSKHDWAS SFFSSTSN+TSSR
Sbjct: 1  MITRSNLAEQLREYQIRSKHDWASVSFFSSTSNLTSSR 38

[Close]

BLAST of Cp4.1LG11g08040 vs. TAIR10
Match: AT1G76185.1 (AT1G76185.1 unknown protein)

HSP 1 Score: 70.1 bits (170), Expect = 9.4e-13
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 1


Query: 39 MITRSNLVEQLREYQIRSKHDWASASFFSSTSNITSSR 77
          MITRSNL EQLREYQIRSKHDWAS SFFSSTSN +SSR
Sbjct: 1  MITRSNLAEQLREYQIRSKHDWASVSFFSSTSNFSSSR 38

[Close]

BLAST of Cp4.1LG11g08040 vs. TAIR10
Match: AT1G20460.1 (AT1G20460.1 unknown protein)

HSP 1 Score: 70.1 bits (170), Expect = 9.4e-13
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 1


Query: 39 MITRSNLVEQLREYQIRSKHDWASASFFSSTSNITSSR 77
          MITRSNL EQLREYQIRSKHDWAS SFFSSTSN +SSR
Sbjct: 1  MITRSNLAEQLREYQIRSKHDWASVSFFSSTSNFSSSR 38

[Close]

BLAST of Cp4.1LG11g08040 vs. NCBI nr
Match: gi|659129845|ref|XP_008464875.1| (PREDICTED: uncharacterized protein LOC103502637 isoform X2 [Cucumis melo])

HSP 1 Score: 106.3 bits (264), Expect = 3.4e-20
Identity = 60/82 (73.17%), Postives = 65/82 (79.27%), Query Frame = 1


Query: 1  MLSLNSISQFLVPFICGCVKFPILHRRPS----EKPTSRG--AAMITRSNLVEQLREYQI 60
          MLSLNSISQFLV F+C C +  ILH   S    +K  SRG  +AMITRSNLVEQLREYQI
Sbjct: 1  MLSLNSISQFLVRFLCRCFRSSILHLPSSSLEAKKRRSRGSASAMITRSNLVEQLREYQI 60

Query: 61 RSKHDWASASFFSSTSNITSSR 77
          RSKH+WAS SFFSSTSNITSSR
Sbjct: 61 RSKHEWASVSFFSSTSNITSSR 82

[Close]

BLAST of Cp4.1LG11g08040 vs. NCBI nr
Match: gi|659129843|ref|XP_008464874.1| (PREDICTED: uncharacterized protein LOC103502637 isoform X1 [Cucumis melo])

HSP 1 Score: 106.3 bits (264), Expect = 3.4e-20
Identity = 60/82 (73.17%), Postives = 65/82 (79.27%), Query Frame = 1


Query: 1  MLSLNSISQFLVPFICGCVKFPILHRRPS----EKPTSRG--AAMITRSNLVEQLREYQI 60
          MLSLNSISQFLV F+C C +  ILH   S    +K  SRG  +AMITRSNLVEQLREYQI
Sbjct: 1  MLSLNSISQFLVRFLCRCFRSSILHLPSSSLEAKKRRSRGSASAMITRSNLVEQLREYQI 60

Query: 61 RSKHDWASASFFSSTSNITSSR 77
          RSKH+WAS SFFSSTSNITSSR
Sbjct: 61 RSKHEWASVSFFSSTSNITSSR 82

[Close]

BLAST of Cp4.1LG11g08040 vs. NCBI nr
Match: gi|449452957|ref|XP_004144225.1| (PREDICTED: uncharacterized protein LOC101213289 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 5.8e-20
Identity = 60/82 (73.17%), Postives = 64/82 (78.05%), Query Frame = 1


Query: 1  MLSLNSISQFLVPFICGCVKFPILHRRPS----EKPTSRG--AAMITRSNLVEQLREYQI 60
          MLSLNSISQFLV F+C C    ILH   S    +K  SRG  +AMITRSNLVEQLREYQI
Sbjct: 1  MLSLNSISQFLVSFLCRCFHSSILHLPSSSLEAKKRRSRGSASAMITRSNLVEQLREYQI 60

Query: 61 RSKHDWASASFFSSTSNITSSR 77
          RSKH+WAS SFFSSTSNITSSR
Sbjct: 61 RSKHEWASVSFFSSTSNITSSR 82

[Close]

BLAST of Cp4.1LG11g08040 vs. NCBI nr
Match: gi|823229177|ref|XP_012447331.1| (PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii])

HSP 1 Score: 76.6 bits (187), Expect = 2.9e-11
Identity = 46/80 (57.50%), Postives = 52/80 (65.00%), Query Frame = 1


Query: 6  SISQFLVPF---ICGCVKFP---ILHRRPSEKPTSRGA---AMITRSNLVEQLREYQIRS 65
          S++ FL P    +C   KF    I   + S +P  R      MITRSNL EQLREYQIRS
Sbjct: 3  SLALFLAPIRILLCKFSKFNDFLISKHQESTRPKGRERRKETMITRSNLAEQLREYQIRS 62

Query: 66 KHDWASASFFSSTSNITSSR 77
          KHDWAS SFFSSTSN+TSSR
Sbjct: 63 KHDWASVSFFSSTSNLTSSR 82

[Close]

BLAST of Cp4.1LG11g08040 vs. NCBI nr
Match: gi|728841444|gb|KHG20887.1| (NADH-ubiquinone oxidoreductase chain 5 [Gossypium arboreum])

HSP 1 Score: 75.5 bits (184), Expect = 6.4e-11
Identity = 45/80 (56.25%), Postives = 50/80 (62.50%), Query Frame = 1


Query: 6  SISQFLVPFICGCVKFP------ILHRRPSEKPTSRGA---AMITRSNLVEQLREYQIRS 65
          S++ FL P      KF       I   + S +P  R      MITRSNL EQLREYQIRS
Sbjct: 3  SLALFLAPIRILLCKFSNFNDFLISKHQESTRPKGRERRKETMITRSNLAEQLREYQIRS 62

Query: 66 KHDWASASFFSSTSNITSSR 77
          KHDWAS SFFSSTSN+TSSR
Sbjct: 63 KHDWASVSFFSSTSNLTSSR 82

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g08040 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG11g08040 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIH9_CUCSA	4.0e-20	73.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G358690 PE=4 SV=1	[more]
A0A0D2TSE9_GOSRA	2.0e-11	57.50	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G189400 PE=4 SV=1	[more]
A0A0B0P7M3_GOSAR	4.4e-11	56.25	NADH-ubiquinone oxidoreductase chain 5 OS=Gossypium arboreum GN=F383_03918 PE=4 ...	[more]
Q9LMV5_ARATH	7.6e-11	57.14	F5M15.20 OS=Arabidopsis thaliana PE=4 SV=1	[more]
W9RN34_9ROSA	3.8e-10	92.11	Uncharacterized protein OS=Morus notabilis GN=L484_011673 PE=4 SV=1	[more]

BLAST of Cp4.1LG11g08040 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G76185.1	9.4e-13	89.47	unknown protein	[more]
AT1G20460.1	9.4e-13	89.47	unknown protein	[more]

BLAST of Cp4.1LG11g08040 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659129845\|ref\|XP_008464875.1\|	3.4e-20	73.17	PREDICTED: uncharacterized protein LOC103502637 isoform X2 [Cucumis melo]	[more]
gi\|659129843\|ref\|XP_008464874.1\|	3.4e-20	73.17	PREDICTED: uncharacterized protein LOC103502637 isoform X1 [Cucumis melo]	[more]
gi\|449452957\|ref\|XP_004144225.1\|	5.8e-20	73.17	PREDICTED: uncharacterized protein LOC101213289 [Cucumis sativus]	[more]
gi\|823229177\|ref\|XP_012447331.1\|	2.9e-11	57.50	PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]	[more]
gi\|728841444\|gb\|KHG20887.1\|	6.4e-11	56.25	NADH-ubiquinone oxidoreductase chain 5 [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g08040.1	Cp4.1LG11g08040.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34936	FAMILY NOT NAMED	coord: 34..76 score: 3.3
None	No IPR available	PANTHER	PTHR34936:SF1	SUBFAMILY NOT NAMED	coord: 34..76 score: 3.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG11g08040	Cucsa.077680	Cucumber (Gy14) v1	cgycpeB0126
Cp4.1LG11g08040	CmaCh12G006660	Cucurbita maxima (Rimu)	cmacpeB181
Cp4.1LG11g08040	CmaCh05G009940	Cucurbita maxima (Rimu)	cmacpeB767
Cp4.1LG11g08040	CmoCh05G010120	Cucurbita moschata (Rifu)	cmocpeB721
Cp4.1LG11g08040	CmoCh12G006050	Cucurbita moschata (Rifu)	cmocpeB155
Cp4.1LG11g08040	Csa6G358690	Cucumber (Chinese Long) v2	cpecuB120
Cp4.1LG11g08040	MELO3C026549	Melon (DHL92) v3.5.1	cpemeB090
Cp4.1LG11g08040	CSPI06G18800	Wild cucumber (PI 183967)	cpecpiB118
Cp4.1LG11g08040	Lsi08G008050	Bottle gourd (USVL1VR-Ls)	cpelsiB099
Cp4.1LG11g08040	MELO3C026549.2	Melon (DHL92) v3.6.1	cpemedB113
Cp4.1LG11g08040	CsaV3_6G031700	Cucumber (Chinese Long) v3	cpecucB0132
Cp4.1LG11g08040	Bhi04G001224	Wax gourd	cpewgoB0146
Cp4.1LG11g08040	Carg17655	Silver-seed gourd	carcpeB0191
Cp4.1LG11g08040	Carg21863	Silver-seed gourd	carcpeB0297

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG11g08040	Cp4.1LG07g05940	Cucurbita pepo (Zucchini)	cpecpeB149

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG11g08040	Watermelon (Charleston Gray)	cpewcgB123
Cp4.1LG11g08040	Watermelon (Charleston Gray)	cpewcgB124
Cp4.1LG11g08040	Watermelon (97103) v1	cpewmB100
Cp4.1LG11g08040	Cucumber (Gy14) v2	cgybcpeB715