Cp4.1LG11g07400 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG11g07400
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionAP2-like ethylene-responsive transcription factor
LocationCp4.1LG11 : 5951516 .. 5955237 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTAAATTCAGAGTTCTGTTCTTTCAAAACTGATTCCGTGGCCGTCAACTGCATAAGGAGACGGCGGAGAAGCTGCAAGGGAAGCCGTCAACCACCCAAGTCACCGGCAGATCAATCCACTGCCACAAAAAGAAGCTCCAGGTTTCGTGGAGTTAGCAGGTATTGAGAATATTTTGACAACTACTTAAAATTAAAACTAAACTACCATACAAATCACGGGTTGGGTTTCATAAGTCGAGTTTATGTCCGAGCTTGAGTAGAATGTTGAATTTAGGAGTGTACACGAGTTGGGTTGGATGGGATTGGAAAAATCTTTTGGACCAATTCGAAAATTTTAGTTGGTTGAGTTGGTAACACGAGCAATTCAAATAGAGTTCACAATCCAACTCAACCTTCTGTTTTCGGGTTAGATTGAGTTGACTTGTCATGTTGTTCTGTTTTTTAGTTAGATTGAGTTAGGTTGGGTTGTTGGTTGTCATGTTATTCCTTTTCTTAAAAAAAAAACTATATTTATGGACAACACATCGGATTATTACATTAATAACAGCTCATAAAGTTCAAATATCAAACATTTACAAATGAAACACATCATTAGCATCAATTATAAACGTTAAATACTCTTTATTTTTTAGAAGTAAAGTAAGATAGGGTTGGGTAGGGTTGAGTTGTAACTCTATTTTCGGGTTGATCGGGTTGACCTGACCATCAACCCGACCAAAAACATGTCAACCCTCCAACCAAACTAAATTTTTCGATTTCCCAAAAAATCAACCCAACCCCAAAAAAAAAAAAGAAAAAAAAATGTAACCCAACTCAATCTTTATAGATTGGATTAGATAGTCGAGATTGTCGAGTTATCAGGTCATATGAATAACTCTAATTGAAAATGAGCAGACATCGATGGACGGGACGTTTTGAAGCTCACTTATGGGACAAAGGGTCATGGAATCCAACACAAAGGAAGAAAGGAAAGCAAGGTAAATTAAGGTTAACTTCATAAATATGGTGTTTATGGATGGCTAAGCTCATAACTTCTCTTGTTTGTGTTGTGATGGGGTGATGATCACCCATTTGAAACAAATGGAGCAGTTTATTTAGGTAAGTTTGTTAAAACGCAATTAAATTATATTTAAATATCATTATAAATATGTAAATAAAAACATGTTATAAACGTGTTTAAATGAAAAATAGGAGCTTATGATGAAGAAGAATCAGCTGCTAGAGCATATGACTTAGCTGCACTCAAATATTGGGGAACCTCCACTTTCACTAATTTTTCGGTACCATTAAATTCTATTTAGTTTTCTATTCTTAATTTTTATATTCAAAATTATTTCATTTTCGGATTAGGTTAATGACGAGAAATAGAATTGGAATCGAAGGTGTGTATTCTCATTCATATTCATAACTAGATACAAACTAGTAATTAATATCTACCCATCACGAAAATATAAATTAATTAAATATTTAAAATAAAATAAAATAAAATATACTACCGAATATTAAAATATAATATCTAAGATATATTCCATAATTAATATATTCTCTATTATATTAGATTGGGATGATTATTTTGTGTAGGTATCTGATTATGAGAATGAGATTAAGATAATGAAGAGGGTGACAAAGGAGGAATACTTGGCCTCTTTAAGAAGGTGATTAAATCCAATAATTTACACTCTATTTAACAATTATCTAATTTTTTTAATTTTTAATTATAAAAAAAACATTTTTATTTTTGTTCGGATGAAAATTAAAAAAATTAACAAAAAAACCAATATGTTATCGAGTTAGACTTCAATTTTACCAGTCTCGTAAGAAAAACTAACGTATAATACATTTTGGTTCCACTCGTTCTTGGCAGGAGAAGTAGTGGTTTCTCTAGAGGTGTATCCAAATATCGAGGAGTTGCGAGGTAATATCACTCAAACGTTTTTTTTTTTTTAATTTCAACGATCCACATTTATTCGAGAGGGAAACGAAACATTCTTTATAAGGGTATAAGGGTGTGGAAACCTATCACTAGTAGACGCATTTTAAAATCTTGAGGGGAAGGTCGAAAAAGAAATTCCAAAGAGGACAGTATTTGCTAGCGGTGGGGTTGAGCTGTTACAAATGGTATTAAAATCAGACACCAAGCGATGTGTCAGTAAGGAGGCTAAGCCCTGAAAGGGGTAGATTGTGAGATCCCACATCGATTTCTTTATAAGAGTGTGGAAACTTCTCCCTATTAGACGCGTTTAAAATTTTGAGGGGAAGTCGTCCAAAGAGGACAATATCTGCTAGCGGTGGACTTGAATTGTTATAGAAGAATTCGAACATCACAAGTTTGAAATAAAGAGAGTCGATTTTGCAGACACCATCACAATGGGAGGTGGGAAGCAAGAATTGGAAGAGTATTTGGCAACAAGTATTTATACCTTGGAACTTACGGTGAGTATTTCAACTCCAAAATTTATTAATTTCCAATGGTTCATAATGGTTAAGCGTTGATCACTTGTAGGTACACAAGAGGAGGCAGCGAGGGCATACGACATAGCGGCAATCGAATATAGAGGCCTCAACGCAGTGACCAACTTCGAGTTGAGCAGCTACATAAGGTGGCTTAAGCCAAACCCAATGCAGCCTTCTCCACCATTGTCCTTTTCAATTGATACCAATACTACGAGTAATAACGCATTTACTCCGACTGCCCCACGAACGTCCCCTCGCACGGCCCTTGGCCTTCTCCTCAAGTCGTCCCTCTTCAAACACCTTATGGAGAAGAACGTTGTGAACGTCAATGGAGATGTCGAAATGGAAGAGGAGTACCCCATGGATGAAGGTAGAGCGCTACTCTCCTTTGTTGAACCTAATCCGTACTTGCACTTGCAATATTCATGTCAAGGAACCACCAACTTGTCACTCTCTACCCCTTTTCATTACTCCGCTTTGGCTTGATCTCATATATACAAACGTCATACATTTTAGACATGTTTGTAATGGCTTTTTGAGTGTCTAAAAAAGTGTTTTTAAGTGCAAATAAAATACTTTTTGAGTACTTGAAAAGTCGTTCATAGTACTTTAATTATTCTTGATGTTTGTATGTCATATGTAACCATAGTTATACGAAGAATCAACATAGTTTTGGTCTTTGACAAGTGTTTATTTAGTCGGCCCACTCAGTTCATGTTTTTTCTCTATCTTGTTTATACCAACTCTTAGTTAATTGTAATTGTAAGGATATTTAATACTAAATTAGAGTTTAACACATATATCATATTTGATATTTTATTATAGAAAAATATCTGGATATTCTTCCATTCCGTTTACTATATATATCTTTAATTTATTGTTTTTTTTTTTTTTATTTATTACTCTTTCCATATCTTTGTAATTTATTTGATTATAAATAGAGAATTTTCTCACCATTTAAGGTATGGAGTGATTTTAGCAAATATTCTCAAACACAAATGTGAACTCAAATTGAGATAGGTTCATTACTAAGATTAGTTCACAACCACTAATGTGATTCTATCTTCAGATAATACCATGCAGATCCTCGCGCACGAGGATGAGTTCACAAGTACTTTAAGTGTTCCCACATTAGTCACGTCTTTCTATATGATATTGATCACTAGTTTTAAAGTAGAACATAGTAAATATATAACCTAAACATAACCTGCCTGTGGTTCATCTCTTCGAAGTTGTATTCAACTTATATATATTCTTACAGGGTATACT

mRNA sequence

CTAAATTCAGAGTTCTGTTCTTTCAAAACTGATTCCGTGGCCGTCAACTGCATAAGGAGACGGCGGAGAAGCTGCAAGGGAAGCCGTCAACCACCCAAGTCACCGGCAGATCAATCCACTGCCACAAAAAGAAGCTCCAGGTTTCGTGGAGTTAGCAGGAGAAGTAGTGGTTTCTCTAGAGGTACACAAGAGGAGGCAGCGAGGGCATACGACATAGCGGCAATCGAATATAGAGGCCTCAACGCAGTGACCAACTTCGAGTTGAGCAGCTACATAAGGTGGCTTAAGCCAAACCCAATGCAGCCTTCTCCACCATTGTCCTTTTCAATTGATACCAATACTACGAGTAATAACGCATTTACTCCGACTGCCCCACGAACGTCCCCTCGCACGGCCCTTGGCCTTCTCCTCAAGTCGTCCCTCTTCAAACACCTTATGGAGAAGAACGTTGTGAACGTCAATGGAGATGTCGAAATGGAAGAGGAGTACCCCATGGATGAAGGTAGAGCGCTACTCTCCTTTGTTGAACCTAATCCGTACTTGCACTTGCAATATTCATGGTATACT

Coding sequence (CDS)

CTAAATTCAGAGTTCTGTTCTTTCAAAACTGATTCCGTGGCCGTCAACTGCATAAGGAGACGGCGGAGAAGCTGCAAGGGAAGCCGTCAACCACCCAAGTCACCGGCAGATCAATCCACTGCCACAAAAAGAAGCTCCAGGTTTCGTGGAGTTAGCAGGAGAAGTAGTGGTTTCTCTAGAGGTACACAAGAGGAGGCAGCGAGGGCATACGACATAGCGGCAATCGAATATAGAGGCCTCAACGCAGTGACCAACTTCGAGTTGAGCAGCTACATAAGGTGGCTTAAGCCAAACCCAATGCAGCCTTCTCCACCATTGTCCTTTTCAATTGATACCAATACTACGAGTAATAACGCATTTACTCCGACTGCCCCACGAACGTCCCCTCGCACGGCCCTTGGCCTTCTCCTCAAGTCGTCCCTCTTCAAACACCTTATGGAGAAGAACGTTGTGAACGTCAATGGAGATGTCGAAATGGAAGAGGAGTACCCCATGGATGAAGGTAGAGCGCTACTCTCCTTTGTTGAACCTAATCCGTACTTGCACTTGCAATATTCATGGTATACT

Protein sequence

LNSEFCSFKTDSVAVNCIRRRRRSCKGSRQPPKSPADQSTATKRSSRFRGVSRRSSGFSRGTQEEAARAYDIAAIEYRGLNAVTNFELSSYIRWLKPNPMQPSPPLSFSIDTNTTSNNAFTPTAPRTSPRTALGLLLKSSLFKHLMEKNVVNVNGDVEMEEEYPMDEGRALLSFVEPNPYLHLQYSWYT
Homology
[Close]
BLAST of Cp4.1LG11g07400 vs. Swiss-Prot
Match: WRI1_ARATH (Ethylene-responsive transcription factor WRI1 OS=Arabidopsis thaliana GN=WRI1 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.9e-08
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 1 

Query: 62  TQEEAARAYDIAAIEYRGLNAVTNFELSSYIRWLKPNPMQPSP 105
           TQEEAA AYD+AAIEYRG NAVTNF++S+YI  LK   + P P
Sbjct: 200 TQEEAAAAYDMAAIEYRGANAVTNFDISNYIDRLKKKGVFPFP 242

[Close]
BLAST of Cp4.1LG11g07400 vs. Swiss-Prot
Match: AP2L1_ARATH (AP2-like ethylene-responsive transcription factor At1g16060 OS=Arabidopsis thaliana GN=At1g16060 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.6e-07
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 1 

Query: 62  TQEEAARAYDIAAIEYRGLNAVTNFELSSYIRWLKP-NPM 101
           TQEEAA AYDIAAIEYRGLNAVTNF++S Y++   P NP+
Sbjct: 193 TQEEAAIAYDIAAIEYRGLNAVTNFDISRYLKLPVPENPI 232

[Close]
BLAST of Cp4.1LG11g07400 vs. Swiss-Prot
Match: AP2L3_ARATH (AP2-like ethylene-responsive transcription factor At1g79700 OS=Arabidopsis thaliana GN=At1g79700 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.4e-07
Identity = 35/61 (57.38%), Postives = 41/61 (67.21%), Query Frame = 1 

Query: 46  SRFRGVSRRSS--------GFSRGTQEEAARAYDIAAIEYRGLNAVTNFELSSYIRWLKP 99
           S++RGV+R           G    TQEEAA AYDIAAIEYRGLNAVTNF++S   R+L P
Sbjct: 153 SKYRGVARHHHNGRWEARIGRVFATQEEAAIAYDIAAIEYRGLNAVTNFDVS---RYLNP 210

[Close]
BLAST of Cp4.1LG11g07400 vs. Swiss-Prot
Match: BBM2_BRANA (AP2-like ethylene-responsive transcription factor BBM2 OS=Brassica napus GN=BBM2 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 8.3e-06
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 1 

Query: 61  GTQEEAARAYDIAAIEYRGLNAVTNFELSSY-IRWLKPNPMQP 103
           GTQEEAA AYDIAAI++RGL AVTNF+++ Y ++ +  +P  P
Sbjct: 344 GTQEEAAEAYDIAAIKFRGLTAVTNFDMNRYNVKAILESPSLP 386

[Close]
BLAST of Cp4.1LG11g07400 vs. Swiss-Prot
Match: BBM1_BRANA (AP2-like ethylene-responsive transcription factor BBM1 OS=Brassica napus GN=BBM1 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 8.3e-06
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 1 

Query: 61  GTQEEAARAYDIAAIEYRGLNAVTNFELSSY-IRWLKPNPMQP 103
           GTQEEAA AYDIAAI++RGL AVTNF+++ Y ++ +  +P  P
Sbjct: 344 GTQEEAAEAYDIAAIKFRGLTAVTNFDMNRYNVKAILESPSLP 386

[Close]
BLAST of Cp4.1LG11g07400 vs. TrEMBL
Match: A0A0A0KJ57_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G404260 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.3e-31
Identity = 92/157 (58.60%), Postives = 102/157 (64.97%), Query Frame = 1 

Query: 62  TQEEAARAYDIAAIEYRGLNAVTNFELSSYIRWLK----PNPMQP-SPPLS---FSIDTN 121
           TQEEAARAYDIAAIEYRG+NAVTNF+LS+YIRWLK    PNP Q  SPP+S   F ID N
Sbjct: 194 TQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLKPQTNPNPKQQLSPPISSSLFPIDYN 253

Query: 122 TTS---------------------NNAFTPTAPRTSPRTALGLLLKSSLFKHLMEKNVVN 181
           T +                     NN   PT P+TSPRTALGLLLKSSLFKHL+EKN+VN
Sbjct: 254 TNNTLKSSNNDLHFPIFQSINNDDNNVIIPTNPQTSPRTALGLLLKSSLFKHLVEKNIVN 313

Query: 182 VNGDVEMEEEYPMD-EGRALLSFVEP---NPYLHLQY 186
           VN     EEE P D E R LL FV+    NPY +L Y
Sbjct: 314 VN-----EEEDPKDNEVRGLLDFVDDSNINPYFNLHY 345

[Close]
BLAST of Cp4.1LG11g07400 vs. TrEMBL
Match: A0A0D9WLR3_9ORYZ (Uncharacterized protein OS=Leersia perrieri PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.7e-18
Identity = 64/126 (50.79%), Postives = 81/126 (64.29%), Query Frame = 1 

Query: 51  VSRRSSGFSRG---------TQEEAARAYDIAAIEYRGLNAVTNFELSSYIRWLKPNP-- 110
           + R+S+GFSRG         TQEEAARAYDIAAIEYRG+NAVTNF+LSSYIRWLKP P  
Sbjct: 172 IRRKSNGFSRGVSKYRGVARTQEEAARAYDIAAIEYRGINAVTNFDLSSYIRWLKPTPHD 231

Query: 111 ------MQPSPPLS-FSIDTNTTSNNAFTPTAPRTSPRTALGLLLKSSLFKHLMEKNVVN 157
                 + P PP++ F+ D         +P+ P T+  TAL LLL+SS+F+ L+ +    
Sbjct: 232 VTPTSQLLPPPPMAPFAADVYACVRP--SPSPPPTTTTTALSLLLRSSVFQELVARQPTA 291

[Close]
BLAST of Cp4.1LG11g07400 vs. TrEMBL
Match: A0A0L9TM10_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g102200 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.6e-17
Identity = 64/152 (42.11%), Postives = 89/152 (58.55%), Query Frame = 1 

Query: 53  RRSSGFSRGTQEEAARAYDIAAIEYRGLNAVTNFELSSYIRWLKP----------NPMQP 112
           RRSSGFSRGTQEEAARAYDIAAIEYRG+NAVTNF+LS+YIRWL+P           P   
Sbjct: 140 RRSSGFSRGTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLRPGTQPIASHDQKPGTD 199

Query: 113 SPPLSFS--------IDTNTTSNNAFTPT-------------------APRTSPRTALGL 167
             P + S        I+ + ++ ++F+                       + S  TALGL
Sbjct: 200 PQPFATSNSMQTRGNIEVSNSNMHSFSSAELDSTKKQDFSKYMNPLSPCNKPSSPTALGL 259

[Close]
BLAST of Cp4.1LG11g07400 vs. TrEMBL
Match: A0A0D2RYA8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G056300 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.7e-16
Identity = 62/134 (46.27%), Postives = 82/134 (61.19%), Query Frame = 1 

Query: 62  TQEEAARAYDIAAIEYRGLNAVTNFELSSYIRWLKPN--------------PMQPSPPLS 121
           TQEEAARAYDIAAIEYRG+NAVTNF+LS+YIRWLKPN              P Q S P  
Sbjct: 203 TQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLKPNESLPMAVEPEPVTLPSQASTPRE 262

Query: 122 F---SIDTNTTSN--NAF----------TPTAPRTSPRTALGLLLKSSLFKHLMEKNVVN 163
               S++ ++T++  N+F             + + S  TALGLLL+SS+F+ L+EKN+ N
Sbjct: 263 ESKPSVNHSSTADYLNSFPKQVVESKIHVMNSNKCSSTTALGLLLRSSIFRDLVEKNLAN 322

[Close]
BLAST of Cp4.1LG11g07400 vs. TrEMBL
Match: A0A0B2PWF1_GLYSO (Ethylene-responsive transcription factor WRI1 OS=Glycine soja GN=glysoja_019338 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-15
Identity = 81/236 (34.32%), Postives = 116/236 (49.15%), Query Frame = 1 

Query: 18  IRRRRRSCKGS---------RQPPKSPADQSTA---TKRSSRFRGVSRRSSGFSRG---- 77
           ++RRRR    +         +Q P+    ++++   TKRSSRFRGVSR+SSGFSRG    
Sbjct: 31  VKRRRREVAAAASSRDDNHHQQSPQQEVGENSSISTTKRSSRFRGVSRKSSGFSRGVSKY 90

Query: 78  -------------------------------TQEEAARAYDIAAIEYRGLNAVTNFELSS 137
                                          TQEEAA AYDIAAIEYRG++AVTNF+LS+
Sbjct: 91  RGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAAHAYDIAAIEYRGIHAVTNFDLST 150

Query: 138 YIRWLKPN----------------PMQPSPPLSFSIDTNTTS----NNAFTPT------- 168
           YI+WLKP+                  + + P ++++   + S    N+  +P        
Sbjct: 151 YIKWLKPSGGGTPEANLESHAVLEHQKLASPSNYALTEESKSLVLHNSFISPDSLDSPVK 210

[Close]
BLAST of Cp4.1LG11g07400 vs. TAIR10
Match: AT3G54320.1 (AT3G54320.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 58.5 bits (140), Expect = 5.0e-09
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 1 

Query: 62  TQEEAARAYDIAAIEYRGLNAVTNFELSSYIRWLKPNPMQPSP 105
           TQEEAA AYD+AAIEYRG NAVTNF++S+YI  LK   + P P
Sbjct: 200 TQEEAAAAYDMAAIEYRGANAVTNFDISNYIDRLKKKGVFPFP 242

[Close]
BLAST of Cp4.1LG11g07400 vs. TAIR10
Match: AT1G16060.1 (AT1G16060.1 ARIA-interacting double AP2 domain protein)

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-08
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 1 

Query: 62  TQEEAARAYDIAAIEYRGLNAVTNFELSSYIRWLKP-NPM 101
           TQEEAA AYDIAAIEYRGLNAVTNF++S Y++   P NP+
Sbjct: 193 TQEEAAIAYDIAAIEYRGLNAVTNFDISRYLKLPVPENPI 232

[Close]
BLAST of Cp4.1LG11g07400 vs. TAIR10
Match: AT1G79700.2 (AT1G79700.2 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 55.8 bits (133), Expect = 3.3e-08
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 1 

Query: 62  TQEEAARAYDIAAIEYRGLNAVTNFELSSYIRWLKPN 99
           TQEEAA AYDIAAIEYRGLNAVTNF++S   R+L PN
Sbjct: 187 TQEEAAIAYDIAAIEYRGLNAVTNFDVS---RYLNPN 220

[Close]
BLAST of Cp4.1LG11g07400 vs. TAIR10
Match: AT1G72570.1 (AT1G72570.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 51.6 bits (122), Expect = 6.1e-07
Identity = 23/30 (76.67%), Postives = 28/30 (93.33%), Query Frame = 1 

Query: 62  TQEEAARAYDIAAIEYRGLNAVTNFELSSY 92
           TQEEAA AYDIAAI++RGLNAVTNF+++ Y
Sbjct: 358 TQEEAAEAYDIAAIKFRGLNAVTNFDINRY 387

[Close]
BLAST of Cp4.1LG11g07400 vs. TAIR10
Match: AT4G37750.1 (AT4G37750.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 51.6 bits (122), Expect = 6.1e-07
Identity = 22/31 (70.97%), Postives = 28/31 (90.32%), Query Frame = 1 

Query: 61  GTQEEAARAYDIAAIEYRGLNAVTNFELSSY 92
           GTQEEAA AYD+AAI++RG NAVTNF+++ Y
Sbjct: 417 GTQEEAAEAYDVAAIKFRGTNAVTNFDITRY 447

[Close]
BLAST of Cp4.1LG11g07400 vs. NCBI nr
Match: gi|700192607|gb|KGN47811.1| (hypothetical protein Csa_6G404260 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 3.4e-31
Identity = 92/157 (58.60%), Postives = 102/157 (64.97%), Query Frame = 1 

Query: 62  TQEEAARAYDIAAIEYRGLNAVTNFELSSYIRWLK----PNPMQP-SPPLS---FSIDTN 121
           TQEEAARAYDIAAIEYRG+NAVTNF+LS+YIRWLK    PNP Q  SPP+S   F ID N
Sbjct: 194 TQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLKPQTNPNPKQQLSPPISSSLFPIDYN 253

Query: 122 TTS---------------------NNAFTPTAPRTSPRTALGLLLKSSLFKHLMEKNVVN 181
           T +                     NN   PT P+TSPRTALGLLLKSSLFKHL+EKN+VN
Sbjct: 254 TNNTLKSSNNDLHFPIFQSINNDDNNVIIPTNPQTSPRTALGLLLKSSLFKHLVEKNIVN 313

Query: 182 VNGDVEMEEEYPMD-EGRALLSFVEP---NPYLHLQY 186
           VN     EEE P D E R LL FV+    NPY +L Y
Sbjct: 314 VN-----EEEDPKDNEVRGLLDFVDDSNINPYFNLHY 345

[Close]
BLAST of Cp4.1LG11g07400 vs. NCBI nr
Match: gi|659113887|ref|XP_008456799.1| (PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700 [Cucumis melo])

HSP 1 Score: 129.8 bits (325), Expect = 5.0e-27
Identity = 83/161 (51.55%), Postives = 96/161 (59.63%), Query Frame = 1 

Query: 62  TQEEAARAYDIAAIEYRGLNAVTNFELSSYIRWLKP--------NPMQ--------PSPP 121
           TQEEAARAYDIAAIEYRG+NAVTNF+L++YIRWLKP        NP Q           P
Sbjct: 196 TQEEAARAYDIAAIEYRGINAVTNFDLNTYIRWLKPQTNPNQNPNPKQQLSPPIISSLFP 255

Query: 122 LSFSIDT------------------NTTSNNAFTPTAPRTSPRTALGLLLKSSLFKHLME 181
           + ++ D                   N   N+   PT P+TSPRTALGLLLKSSLFKHL+E
Sbjct: 256 IDYNTDNTLKSSNKDLRFPIFQSINNDHDNDVIIPTTPQTSPRTALGLLLKSSLFKHLVE 315

Query: 182 KNVVNVNGDVEMEEEYPMD-EGRALLSFVEP--NPYLHLQY 186
           KN+VN N     EEE P D E R LL FV+   NPY +L Y
Sbjct: 316 KNIVNANN----EEEDPKDNEVRGLLDFVDDSNNPYFNLHY 352

[Close]
BLAST of Cp4.1LG11g07400 vs. NCBI nr
Match: gi|645230040|ref|XP_008221746.1| (PREDICTED: ethylene-responsive transcription factor WRI1-like [Prunus mume])

HSP 1 Score: 97.8 bits (242), Expect = 2.1e-17
Identity = 62/126 (49.21%), Postives = 75/126 (59.52%), Query Frame = 1 

Query: 61  GTQEEAARAYDIAAIEYRGLNAVTNFELSSYIRWLKP------------NPMQPSPPLSF 120
           GTQEEAA AYDIAAIEYRG+NAVTNF+LS+YIRWL+P            N  +   P SF
Sbjct: 211 GTQEEAAHAYDIAAIEYRGINAVTNFDLSTYIRWLRPGANSLGSQEPKLNTEKADVPNSF 270

Query: 121 SIDTNTTSNN------------AFTPTAPRTSPRTALGLLLKSSLFKHLMEKNVVNVNGD 163
            +D   TS N              +P    +S  TALGLLL+SS+FK L+EK   N+NGD
Sbjct: 271 QVDDVDTSRNRNNFQRQQKQPMPISPCTKSSSSPTALGLLLQSSVFKELVEK---NLNGD 330

[Close]
BLAST of Cp4.1LG11g07400 vs. NCBI nr
Match: gi|920687484|gb|KOM31467.1| (hypothetical protein LR48_Vigan01g102200 [Vigna angularis])

HSP 1 Score: 95.9 bits (237), Expect = 8.0e-17
Identity = 64/152 (42.11%), Postives = 89/152 (58.55%), Query Frame = 1 

Query: 53  RRSSGFSRGTQEEAARAYDIAAIEYRGLNAVTNFELSSYIRWLKP----------NPMQP 112
           RRSSGFSRGTQEEAARAYDIAAIEYRG+NAVTNF+LS+YIRWL+P           P   
Sbjct: 140 RRSSGFSRGTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLRPGTQPIASHDQKPGTD 199

Query: 113 SPPLSFS--------IDTNTTSNNAFTPT-------------------APRTSPRTALGL 167
             P + S        I+ + ++ ++F+                       + S  TALGL
Sbjct: 200 PQPFATSNSMQTRGNIEVSNSNMHSFSSAELDSTKKQDFSKYMNPLSPCNKPSSPTALGL 259

[Close]
BLAST of Cp4.1LG11g07400 vs. NCBI nr
Match: gi|694361705|ref|XP_009360494.1| (PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 [Pyrus x bretschneideri])

HSP 1 Score: 93.6 bits (231), Expect = 4.0e-16
Identity = 65/147 (44.22%), Postives = 78/147 (53.06%), Query Frame = 1 

Query: 61  GTQEEAARAYDIAAIEYRGLNAVTNFELSSYIRWLKP------------NPMQPSP---- 120
           GTQEEAA AYDIAAIEYRG+NAVTNF+LS+YIRWL+P            NP QP P    
Sbjct: 218 GTQEEAAHAYDIAAIEYRGINAVTNFDLSTYIRWLRPGSNSLGPQEPKSNPDQPLPMPTS 277

Query: 121 -----------------PLSFSIDTNTTSNNA------------FTPTAPRTSPRTALGL 163
                            P SF++D    S N              +P    +S  TALGL
Sbjct: 278 SNGVPLRKEGGQMSMFQPNSFAVDDIDASKNRDIFPRQQQPPMPVSPCPKSSSSPTALGL 337

The following BLAST results are available for this feature:
BLAST of Cp4.1LG11g07400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
WRI1_ARATH8.9e-0867.44Ethylene-responsive transcription factor WRI1 OS=Arabidopsis thaliana GN=WRI1 PE... [more]
AP2L1_ARATH2.6e-0772.50AP2-like ethylene-responsive transcription factor At1g16060 OS=Arabidopsis thali... [more]
AP2L3_ARATH4.4e-0757.38AP2-like ethylene-responsive transcription factor At1g79700 OS=Arabidopsis thali... [more]
BBM2_BRANA8.3e-0658.14AP2-like ethylene-responsive transcription factor BBM2 OS=Brassica napus GN=BBM2... [more]
BBM1_BRANA8.3e-0658.14AP2-like ethylene-responsive transcription factor BBM1 OS=Brassica napus GN=BBM1... [more]
BLAST of Cp4.1LG11g07400 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJ57_CUCSA2.3e-3158.60Uncharacterized protein OS=Cucumis sativus GN=Csa_6G404260 PE=4 SV=1[more]
A0A0D9WLR3_9ORYZ1.7e-1850.79Uncharacterized protein OS=Leersia perrieri PE=4 SV=1[more]
A0A0L9TM10_PHAAN5.6e-1742.11Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g102200 PE=4 SV=1[more]
A0A0D2RYA8_GOSRA4.7e-1646.27Uncharacterized protein OS=Gossypium raimondii GN=B456_012G056300 PE=4 SV=1[more]
A0A0B2PWF1_GLYSO1.4e-1534.32Ethylene-responsive transcription factor WRI1 OS=Glycine soja GN=glysoja_019338 ... [more]
BLAST of Cp4.1LG11g07400 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G54320.15.0e-0967.44 Integrase-type DNA-binding superfamily protein[more]
AT1G16060.11.5e-0872.50 ARIA-interacting double AP2 domain protein[more]
AT1G79700.23.3e-0878.38 Integrase-type DNA-binding superfamily protein[more]
AT1G72570.16.1e-0776.67 Integrase-type DNA-binding superfamily protein[more]
AT4G37750.16.1e-0770.97 Integrase-type DNA-binding superfamily protein[more]
BLAST of Cp4.1LG11g07400 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192607|gb|KGN47811.1|3.4e-3158.60hypothetical protein Csa_6G404260 [Cucumis sativus][more]
gi|659113887|ref|XP_008456799.1|5.0e-2751.55PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700 [Cucumis ... [more]
gi|645230040|ref|XP_008221746.1|2.1e-1749.21PREDICTED: ethylene-responsive transcription factor WRI1-like [Prunus mume][more]
gi|920687484|gb|KOM31467.1|8.0e-1742.11hypothetical protein LR48_Vigan01g102200 [Vigna angularis][more]
gi|694361705|ref|XP_009360494.1|4.0e-1644.22PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 [Pyrus x ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0007275multicellular organism development
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR016177DNA-bd_dom_sf
IPR001471AP2/ERF_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007275 multicellular organism development
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g07400.1Cp4.1LG11g07400.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001471AP2/ERF domainGENE3DG3DSA:3.30.730.10coord: 62..88
score: 5.
IPR001471AP2/ERF domainSMARTSM00380rav1_2coord: 47..93
score: 1.
IPR001471AP2/ERF domainPROFILEPS51032AP2_ERFcoord: 24..87
score: 10
IPR016177DNA-binding domainunknownSSF54171DNA-binding domaincoord: 61..88
score: 5.5
NoneNo IPR availablePANTHERPTHR32467:SF27SUBFAMILY NOT NAMEDcoord: 62..167
score: 5.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG11g07400CmaCh05G009270Cucurbita maxima (Rimu)cmacpeB767
Cp4.1LG11g07400CmoCh05G009180Cucurbita moschata (Rifu)cmocpeB726
Cp4.1LG11g07400Cla021880Watermelon (97103) v1cpewmB100
Cp4.1LG11g07400MELO3C019787Melon (DHL92) v3.5.1cpemeB090
Cp4.1LG11g07400MELO3C019787.2Melon (DHL92) v3.6.1cpemedB113
Cp4.1LG11g07400CsaV3_6G036310Cucumber (Chinese Long) v3cpecucB0135
Cp4.1LG11g07400CsGy6G020520Cucumber (Gy14) v2cgybcpeB717
Cp4.1LG11g07400Carg26433Silver-seed gourdcarcpeB1477
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG11g07400Cucumber (Chinese Long) v3cpecucB0129
Cp4.1LG11g07400Cucurbita pepo (Zucchini)cpecpeB149
Cp4.1LG11g07400Cucumber (Gy14) v1cgycpeB0088
Cp4.1LG11g07400Cucurbita maxima (Rimu)cmacpeB181
Cp4.1LG11g07400Cucurbita moschata (Rifu)cmocpeB155
Cp4.1LG11g07400Cucurbita moschata (Rifu)cmocpeB721
Cp4.1LG11g07400Wild cucumber (PI 183967)cpecpiB119
Cp4.1LG11g07400Cucumber (Chinese Long) v2cpecuB121
Cp4.1LG11g07400Bottle gourd (USVL1VR-Ls)cpelsiB099
Cp4.1LG11g07400Watermelon (Charleston Gray)cpewcgB123
Cp4.1LG11g07400Cucumber (Gy14) v2cgybcpeB593
Cp4.1LG11g07400Silver-seed gourdcarcpeB0191