Cp4.1LG11g07390 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG11g07390
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	RNase H family protein
Location	Cp4.1LG11 : 5909146 .. 5914427 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGAGCGACTGGAGCGAGAAACTTAGTATGGAGAAACCTATTTGGGTGGATGGATGACATTGATTTGATTTGGAAACCCTGAAATCCCCATAGTTCCTGGAAAATTCCCCTCTCATGAACTGCTTCTCCCAATTCTCTACCTACACTCGCGCCATTTTCAGAGCCACCAATCTTGCTTTTGCAGCTTCCACCTCCATTCATGGCTGCCGCTTTAATCCCTACTGGACCTCGAGCTTTCACAGCGTCACTCTTAAACCTACTCCTTTAGACTCCTTGTGTTCCAGATTTCGTCTACGTTGCTACTCCTCTCGAAAACTCCGCAAGGGCGCTTCTCCTTCTCCCAACTTAGATTCTAAACCTCCCATGGAACCAGACATGGGCGACTTCTTTGTCGTTCGGAAGGGGGACGTTGTTGGAGTCTATAAAAGTTTTACTGACTGTCAGGCGCAAATTGGATCTTCGGTATTCATTTCTTTTACTTTTGATTGGTGATTTAACACATTTTGAATTCATGTTCTCTCTGCGAACTTAGATTAGGTTTTCCTACTGGTTACATTTAATTGTTTTTGAAGTATTGGCTCAGTGATCGATCAGTTCATCATACTTCTTATTGCTTAAGGATTTTGTCTTACTTGACAAGCATAGTTCTTTGTTAATTTTACTTATGGTTGCCGGTTTGTTGTAACTGGTGCATTTCGTTCAGTGGATTAAGCTCGGGTGTTATCGTTTCTTTTCTGTGGCAGATATGCGATCTTCCTGTTAGCGTGTATAAGGGACACTCATTGCCGAAAGACACTGGGGAATATCTTGCTTCCGTCGGGCTTAAGAATGCTCTGTACACTATTAAAGCTGCAGATATGAGACCTGATCTTTTCAGTTCGCTCGTTCCTTGCACTTTTCATGTATGATGCTTCATTAGTTGAATGATTATCGAGTTAAAAGTCTAAGAGAACATTACTGGCATGAATTATATAAGAAAAAAGTAGGAAAAATATAGTAATTCTGCTCTTATACTAGACTTATTCAAGCATCACAAAGATTAATATTTCCCAAATGTTAGATCATCCATGTTTGGTCATTATTGAAGAGGGTGAATTTGGCCCTATCATGGGATGCTCTACAGATGTTTGCGAGAAAGGAGCATATTGTTTTAGTCTCCCTAGGTCACAATTTTGAGTTTGTACTCCATGCCTCCCTTGCCTTGTAATTTTCTATTTTGTAGAGAACACGGTTTCATGTTTTATAGGAAGAATAGTATAACTAGCACAGTTTGCACTTTAAAGTCAGACGATGAAGGCTGTAAACTACAACAACATGAAGCATTTTATACATATTGGTTTTTTACAATAGCAAATTAGGATGGTAGGTTTTCAATTTTGTTTTTATGTAGATTCAATCTCCTTCCTGGACTATCTTTATGCACTCTAGCATAAGTTTGTTATATTTATAAAAGGTTTCTGTTTTCCAGGATGAAGCTACTTCTCTTAAAGGTGAGGCTTCTGGCCAGGATGCCATAAAGAAGAGATCAAGAGAGACCATTGTATCAGAAAATATTGTAAGTTGATTTTCATGTCATCTTCTAAGCTAAAATTTTAATTGAAGCGATAAAGCTCTTTACAAAGGAACTTGCAACACTGAATTTGATATGCAACTTATGGTTTTTGTTGTCAATGCTCGTTTACTTGGGGTTAATGCAGATTTAAATGTTTGCAGGGGTCAACTGTTTTAACTCCTACTTCAAAAGATCCCTTGAGGAAACATGTCAAGTTGGAAGATTCCGTTGTGTCCCAAGCACCCTCTAACCATGTAAGTCAAAGTCTCGGTGATGTCATAGTGATTGGACCAATACTATGAACTGCATACTCTTGTCTGTAGCTAAATATTTGTGTACATGTGATTCTGTATTTTTTGCCTAGTGTTGCTTAAGTGGTTGATTAAAAAAAGAAATAAATTACTGCATTTGTTTGTTGTCCTCTGAGTTGTATCAATTTTTATTTTAGGCTATTAATTAGGACGTAAAGTTCTGTTTCTAAACTAATTATGTATTTGATTGTGTCCTTGTGTTGTTAACATCATTCAAAAGGTGCCAGCTCGTTAAACCTTCAGAATTTTCACATCTGTCAACTGATATCAAGTCATCAATTTCGTTATGATCATAATAAGGTTGGTACAGGGTAGTTCTTATGCAAAGATATAATTAGGGTCTGAAATATTACTTTTAATTTAAAAGGGCCAAAATGAAACCAGCAAATGGTTATGGTTTCCTGATGGTAATCGTATTTTATAATGAACTAGCGAGGATGCAAACTAGTGGAGTCTCTTTTTAGTTTTGTTTTGACGCTGATATGCTTTCATTTCATTGTCCAGATTCCAAAATGATATTTCCATAATACAATGGAATAGTCCCTTAGTTTATTTTTCAACTTACTCGACAGATTTTATAGCCATTATAATATTTCATGTACAGGAATCTTGCTTTCTAGAATTCGATGGTGCCTCAAAGGGAAACCCTGGGCAAGCTGGTGCAGGAGCTGTTCTACGAGCTCATGATGGGAGTGTGGTATACATTCTTCCGTTTAGATCCCACATTACTTATGTATTCTTATTTATATATACCTAATCTATCTCTCCCCCCCTTGGAATAGATATGTAGACTGCGTGAAGGCCTAGGTATAGCAACCAATAATGTTGCTGAATATCGAGCAATTCTTTTAGGGTTGAAGTATGCACTTGAGAAAGGGTTTACTAGGATCCATGTCCAAGGCGACTCCAAACTTGTCTGTATGCAGGTTGGTTAAAATATTTTCCCCTTACAAGTATTGTTGGGTTTTTGTATTTATGTTTATGTTTATGTTTTTTTTAATTTATTTGTCAACTTAATTCTTGTTGTGGCCTCACATTGTAAGCTTGTTAAGTAGGTCTCATTTTGTCTTTTATATTTAGGAAAAATTCGGAGGTATGGTTTTAATGGTTGTCTTAGGACTAAGAAGTTCAAAGCTGAAAACTTTGTATTTAAAGATAATCCTTGTAAATTATTATTACACTGTAAGAAACATTTGTACTGAAGGGAAATAATTAGTCCAAACTGCATGAAACTAATGTTGTCATACCCGATTCCGGGAACATCCCAATAGTTTTCCTGACCCATGGTTTGCAGTCTCTGTGAAAATACTATTTCATCGAGAGTTGTACTTCTATTTTCTTCAAAGGGAAGGAGGCTAACGTCCTTTTGTCGATATGCCTGCTCTGTGAAGATTCCCTTGACACTACTTTCACCCTAACCCAAGGGGGCAGGAACGTTAGAAGAAAACACACCAGTTGACAAATTGAAAAAGTTGTAGAACATTTGTTTAAGGCATTCTGATTCCTGAAACTTTTTCTTGCTATCGATTGCCCCTTTTATCAACACATGGGATGAAGTTTTAATGCAGTGGAACAATTTTCTGGTTAACAACATTGACGAAAAACCTTTCCTCTATTGAGATGTTAACAAACCTTACCTTCAAGTTGAAAAGTATATCATCATCAATGTAGCTCACTTCCATATGAGTTCTTTTGAATATCTAGCATTGGTTTTTGTGGCTCAGCATTGTGGAGGTTCATTAATAGAAAGTTGTAGGAAAGATCCAGAATTTGAACCAAACACAGTTCTTATATGGAGTTAGAAATTTACTAATTACTATGCATAGCAATTAAAGAATTAAAATGTATCTGGCCACGTCTTTTGGTTAGTTGCATTTTCAAGTTCGCATCCCCAGTTTCTCTCGCTAGTAGTATGGTTTTGCTGAAATACAGTGTTTATGTAAATATTTAATATTAGGGACATTTAAAGCTGCAACTGTTTTGTTATTGTCAACCTCCGTATATCAAAACCAACCTTATCTCTTAGTCCTACCTCTCTGTCTGGATCCATCTGTTTTTTGGTAAAAAATAAAATTCATGGCATCTTCGTTTGTTCCCCTTTTTCTTATGTATTCTAAATCAATCATACTTCATTGAACAGGTTCAAGGATTATGGAAGGTAAAAAATGAGAATATCGCTGAGTTATGTAATGAAGTTATGAAGCTGAAGGATAAATTTCTCTCCTTCGAGATCAGTCATGTACTAAGGGTCAGTACCATTAATTCCTTTCTATTTGCATCTCACGATGTTGTGTAGTTGGTTTCTGCATATTATTGTTTCTTATGCTCTACGCACTTTACTATTTAAGATCTGAAGGTGGTGAAAAAAAAAAATATCCTTAAGGGTCAGTACCCTACAAACATAGGCTTAAACTGTAGCCTTATTTTAGTTCAGTTTTTCGATAGAACAGTGAACGTAAGTCAAGTTTGAGTTTGGACGTTGCTTTCTCCACATTATTTGTCCGACAACCGAACGAGACTTGCATACTCGAAAAAATAATAAATACGTACTCATAAAACAGTCTGGTACTTATTCCTTATCAAGGTAATGTCCTTAATGGAATGGATACCAATTCTAGCGACCATTGAATCCATTTTCTTATTTGTTGATATCTGTACTTGTTCATTCTTTGAAATTCTGACATTCTGTCGTTCATTCTGGAAAGAATCTAAACTCTGAAGCCGATGCTGAAGCAAACTTGGCTGTCACTCTACCTGGTAATGCTTATTTGAAATAATTCTAATAACTACTTTGAGTTTTCCTTAAAGTTTAAGAGTAACCAAGGTGGTCCTTCCTATTGCAGACGGCGAAGCCCAAGAGTTTGAAGAATAATAGTTAGAATGCACGGCAGGATACATCTTACAGCATAGAATTATTTTCTGAGGAATGCATTTATAGTCCAATGCTTTGTATGCTACTATTCTTTCCCCAAGGTTGACACGAGCTTTGGGCGTTGTTTCGGTTGCTCGCTTATGCTCCATGACCCTGACATAGGGAACTGAAGTTCTAGTGGCAATGGACTGGACAGTGCACAAGTGCATTTGTCCTGCATATATGAGATAAGAGTCCTAATTCAATTTATAACTGGAATGTTGCATTTATTTTCTTATTCATGTTACCAGTTGATTAGGCAATGATGCAGGCTATAATCGAGAATTAAAGAACACAGAATTTTTGGATTGTTCAATGAAGATCTTTGAGAAAGACGTTTTTTTTTTTCTGCTTCAGCCATCGAGGATTGTCAAACTTTGTAGCTTTTTCTCTAGTTTAAGTCTTGATTAGATCTTCTATTCCTTCAGTTGGCTACTGGCGTTTATAGTCTTCTTCTTTTCTAATTTCAGGATTGGTTAGATCAAATAAGACTTGGGACAATCTCAAA

mRNA sequence

TGGAGCGACTGGAGCGAGAAACTTAGTATGGAGAAACCTATTTGGGTGGATGGATGACATTGATTTGATTTGGAAACCCTGAAATCCCCATAGTTCCTGGAAAATTCCCCTCTCATGAACTGCTTCTCCCAATTCTCTACCTACACTCGCGCCATTTTCAGAGCCACCAATCTTGCTTTTGCAGCTTCCACCTCCATTCATGGCTGCCGCTTTAATCCCTACTGGACCTCGAGCTTTCACAGCGTCACTCTTAAACCTACTCCTTTAGACTCCTTGTGTTCCAGATTTCGTCTACGTTGCTACTCCTCTCGAAAACTCCGCAAGGGCGCTTCTCCTTCTCCCAACTTAGATTCTAAACCTCCCATGGAACCAGACATGGGCGACTTCTTTGTCGTTCGGAAGGGGGACGTTGTTGGAGTCTATAAAAGTTTTACTGACTGTCAGGCGCAAATTGGATCTTCGATATGCGATCTTCCTGTTAGCGTGTATAAGGGACACTCATTGCCGAAAGACACTGGGGAATATCTTGCTTCCGTCGGGCTTAAGAATGCTCTGTACACTATTAAAGCTGCAGATATGAGACCTGATCTTTTCAGTTCGCTCGTTCCTTGCACTTTTCATGATGAAGCTACTTCTCTTAAAGGTGAGGCTTCTGGCCAGGATGCCATAAAGAAGAGATCAAGAGAGACCATTGTATCAGAAAATATTGGGTCAACTGTTTTAACTCCTACTTCAAAAGATCCCTTGAGGAAACATGTCAAGTTGGAAGATTCCGTTGTGTCCCAAGCACCCTCTAACCATGAATCTTGCTTTCTAGAATTCGATGGTGCCTCAAAGGGAAACCCTGGGCAAGCTGGTGCAGGAGCTGTTCTACGAGCTCATGATGGGAGTGTGATATGTAGACTGCGTGAAGGCCTAGGTATAGCAACCAATAATGTTGCTGAATATCGAGCAATTCTTTTAGGGTTGAAGTATGCACTTGAGAAAGGGTTTACTAGGATCCATGTCCAAGGCGACTCCAAACTTGTCTGTATGCAGGTTCAAGGATTATGGAAGGTAAAAAATGAGAATATCGCTGAGTTATGTAATGAAGTTATGAAGCTGAAGGATAAATTTCTCTCCTTCGAGATCAGTCATGTACTAAGGAATCTAAACTCTGAAGCCGATGCTGAAGCAAACTTGGCTGTCACTCTACCTGACGGCGAAGCCCAAGAGTTTGAAGAATAATAGTTAGAATGCACGGCAGGATACATCTTACAGCATAGAATTATTTTCTGAGGAATGCATTTATAGTCCAATGCTTTGTATGCTACTATTCTTTCCCCAAGGTTGACACGAGCTTTGGGCGTTGTTTCGGTTGCTCGCTTATGCTCCATGACCCTGACATAGGGAACTGAAGTTCTAGTGGCAATGGACTGGACAGTGCACAAGTGCATTTGTCCTGCATATATGAGATAAGAGTCCTAATTCAATTTATAACTGGAATGTTGCATTTATTTTCTTATTCATGTTACCAGTTGATTAGGCAATGATGCAGGCTATAATCGAGAATTAAAGAACACAGAATTTTTGGATTGTTCAATGAAGATCTTTGAGAAAGACGTTTTTTTTTTTCTGCTTCAGCCATCGAGGATTGTCAAACTTTGTAGCTTTTTCTCTAGTTTAAGTCTTGATTAGATCTTCTATTCCTTCAGTTGGCTACTGGCGTTTATAGTCTTCTTCTTTTCTAATTTCAGGATTGGTTAGATCAAATAAGACTTGGGACAATCTCAAA

Coding sequence (CDS)

ATGAACTGCTTCTCCCAATTCTCTACCTACACTCGCGCCATTTTCAGAGCCACCAATCTTGCTTTTGCAGCTTCCACCTCCATTCATGGCTGCCGCTTTAATCCCTACTGGACCTCGAGCTTTCACAGCGTCACTCTTAAACCTACTCCTTTAGACTCCTTGTGTTCCAGATTTCGTCTACGTTGCTACTCCTCTCGAAAACTCCGCAAGGGCGCTTCTCCTTCTCCCAACTTAGATTCTAAACCTCCCATGGAACCAGACATGGGCGACTTCTTTGTCGTTCGGAAGGGGGACGTTGTTGGAGTCTATAAAAGTTTTACTGACTGTCAGGCGCAAATTGGATCTTCGATATGCGATCTTCCTGTTAGCGTGTATAAGGGACACTCATTGCCGAAAGACACTGGGGAATATCTTGCTTCCGTCGGGCTTAAGAATGCTCTGTACACTATTAAAGCTGCAGATATGAGACCTGATCTTTTCAGTTCGCTCGTTCCTTGCACTTTTCATGATGAAGCTACTTCTCTTAAAGGTGAGGCTTCTGGCCAGGATGCCATAAAGAAGAGATCAAGAGAGACCATTGTATCAGAAAATATTGGGTCAACTGTTTTAACTCCTACTTCAAAAGATCCCTTGAGGAAACATGTCAAGTTGGAAGATTCCGTTGTGTCCCAAGCACCCTCTAACCATGAATCTTGCTTTCTAGAATTCGATGGTGCCTCAAAGGGAAACCCTGGGCAAGCTGGTGCAGGAGCTGTTCTACGAGCTCATGATGGGAGTGTGATATGTAGACTGCGTGAAGGCCTAGGTATAGCAACCAATAATGTTGCTGAATATCGAGCAATTCTTTTAGGGTTGAAGTATGCACTTGAGAAAGGGTTTACTAGGATCCATGTCCAAGGCGACTCCAAACTTGTCTGTATGCAGGTTCAAGGATTATGGAAGGTAAAAAATGAGAATATCGCTGAGTTATGTAATGAAGTTATGAAGCTGAAGGATAAATTTCTCTCCTTCGAGATCAGTCATGTACTAAGGAATCTAAACTCTGAAGCCGATGCTGAAGCAAACTTGGCTGTCACTCTACCTGACGGCGAAGCCCAAGAGTTTGAAGAATAA

Protein sequence

MNCFSQFSTYTRAIFRATNLAFAASTSIHGCRFNPYWTSSFHSVTLKPTPLDSLCSRFRLRCYSSRKLRKGASPSPNLDSKPPMEPDMGDFFVVRKGDVVGVYKSFTDCQAQIGSSICDLPVSVYKGHSLPKDTGEYLASVGLKNALYTIKAADMRPDLFSSLVPCTFHDEATSLKGEASGQDAIKKRSRETIVSENIGSTVLTPTSKDPLRKHVKLEDSVVSQAPSNHESCFLEFDGASKGNPGQAGAGAVLRAHDGSVICRLREGLGIATNNVAEYRAILLGLKYALEKGFTRIHVQGDSKLVCMQVQGLWKVKNENIAELCNEVMKLKDKFLSFEISHVLRNLNSEADAEANLAVTLPDGEAQEFEE

Homology

[Close]

BLAST of Cp4.1LG11g07390 vs. Swiss-Prot
Match: Y2253_MYCBO (Uncharacterized protein Mb2253c OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb2253c PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.4e-17
Identity = 54/126 (42.86%), Postives = 74/126 (58.73%), Query Frame = 1


Query: 234 LEFDGASKGNPGQAGAGAVLRAHDGS-VICRLREGLGIATNNVAEYRAILLGLKYALEKG 293
           +E DG S+GNPG AG GAV+   D S V+   ++ +G ATNNVAEYR ++ GL  A++ G
Sbjct: 5   IEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVKLG 64

Query: 294 FTRIHVQGDSKLVCMQVQGLWKVKNENIAELCNEVMKLKDKFLSFEISHVLRNLNSEADA 353
            T   V  DSKLV  Q+ G WKVK+ ++ +L  +   L  +F       V R  N+ AD 
Sbjct: 65  ATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYADR 124

Query: 354 EANLAV 359
            AN A+
Sbjct: 125 LANDAM 130

[Close]

BLAST of Cp4.1LG11g07390 vs. Swiss-Prot
Match: Y2228_MYCTU (Uncharacterized protein Rv2228c OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=Rv2228c PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.4e-17
Identity = 54/126 (42.86%), Postives = 74/126 (58.73%), Query Frame = 1


Query: 234 LEFDGASKGNPGQAGAGAVLRAHDGS-VICRLREGLGIATNNVAEYRAILLGLKYALEKG 293
           +E DG S+GNPG AG GAV+   D S V+   ++ +G ATNNVAEYR ++ GL  A++ G
Sbjct: 5   IEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVKLG 64

Query: 294 FTRIHVQGDSKLVCMQVQGLWKVKNENIAELCNEVMKLKDKFLSFEISHVLRNLNSEADA 353
            T   V  DSKLV  Q+ G WKVK+ ++ +L  +   L  +F       V R  N+ AD 
Sbjct: 65  ATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYADR 124

Query: 354 EANLAV 359
            AN A+
Sbjct: 125 LANDAM 130

[Close]

BLAST of Cp4.1LG11g07390 vs. Swiss-Prot
Match: Y2228_MYCTO (Uncharacterized protein MT2287 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=MT2287 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.4e-17
Identity = 54/126 (42.86%), Postives = 74/126 (58.73%), Query Frame = 1


Query: 234 LEFDGASKGNPGQAGAGAVLRAHDGS-VICRLREGLGIATNNVAEYRAILLGLKYALEKG 293
           +E DG S+GNPG AG GAV+   D S V+   ++ +G ATNNVAEYR ++ GL  A++ G
Sbjct: 5   IEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVKLG 64

Query: 294 FTRIHVQGDSKLVCMQVQGLWKVKNENIAELCNEVMKLKDKFLSFEISHVLRNLNSEADA 353
            T   V  DSKLV  Q+ G WKVK+ ++ +L  +   L  +F       V R  N+ AD 
Sbjct: 65  ATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYADR 124

Query: 354 EANLAV 359
            AN A+
Sbjct: 125 LANDAM 130

[Close]

BLAST of Cp4.1LG11g07390 vs. Swiss-Prot
Match: RNH_HALSA (Ribonuclease HI OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) GN=rnhA PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.6e-16
Identity = 50/123 (40.65%), Postives = 71/123 (57.72%), Query Frame = 1


Query: 236 FDGASKGNPGQAGAGAVLRAHDGSVICRLREGLGIATNNVAEYRAILLGLKYALEKGFTR 295
           FDGAS+GNPG A  G VL + DG ++    + +G ATNN AEY A++  L+ A + GF  
Sbjct: 74  FDGASRGNPGPAAVGWVLVSGDGGIVAEGGDTIGRATNNQAEYDALIAALEAAADFGFDD 133

Query: 296 IHVQGDSKLVCMQVQGLWKVKNENIAELCNEVMKLKDKFLSFEISHVLRNLNSEADAEAN 355
           I ++GDS+LV  Q+ G W   + ++        +L   F  + I+HV R  N  ADA AN
Sbjct: 134 IELRGDSQLVEKQLTGAWDTNDPDLRRKRVRARELLTGFDDWSITHVPRATNERADALAN 193

Query: 356 LAV 359
            A+
Sbjct: 194 EAL 196

[Close]

BLAST of Cp4.1LG11g07390 vs. Swiss-Prot
Match: RNHL_BACSU (14.7 kDa ribonuclease H-like protein OS=Bacillus subtilis (strain 168) GN=rnhA PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.3e-07
Identity = 40/124 (32.26%), Postives = 62/124 (50.00%), Query Frame = 1


Query: 237 DGASKGNPGQAGAGAVLRAHDGSVICRLREGLGIATNNVAEYRAILLGLKYALEKGFTRI 296
           DGAS GNPG +G G  ++ H+G         +G+ TN  AE+ A++ G+K    +G+  +
Sbjct: 8   DGASAGNPGPSGIGIFIK-HEGKAES-FSIPIGVHTNQEAEFLALIEGMKLCATRGYQSV 67

Query: 297 HVQGDSKLVCMQVQGLWKVKNENIAELCNEVMKLKDKFLSFEISHVLRNLNSEADAEANL 356
             + DS +V  +   L  VKN        E+++LK  F  F I  +    N +AD  A  
Sbjct: 68  SFRTDSDIV-ERATELEMVKNITFQPFVEEIIRLKAAFPLFFIKWIPGKQNQKADLLAKE 127

Query: 357 AVTL 361
           A+ L
Sbjct: 128 AIRL 128

[Close]

BLAST of Cp4.1LG11g07390 vs. TrEMBL
Match: A0A0A0KTZ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G489310 PE=4 SV=1)

HSP 1 Score: 612.8 bits (1579), Expect = 2.7e-172
Identity = 310/374 (82.89%), Postives = 334/374 (89.30%), Query Frame = 1


Query: 1   MNCFSQFSTYTRAIFRATNLAFAASTSIHGCRFNPYWTSSFHSVTLKPTPLDSLCSRFRL 60
           MNCFSQ STYTR IFR TNL FAASTSIHGC  N YWTSSFH+V +K T LDSLCSRF L
Sbjct: 1   MNCFSQVSTYTRVIFRRTNLVFAASTSIHGCS-NAYWTSSFHNVAVKTTALDSLCSRFGL 60

Query: 61  RCYSSRKLRKG---ASPSPNLDSKPPMEPDMGDFFVVRKGDVVGVYKSFTDCQAQIGSSI 120
           RCYS+RK RK     SPSP LDS+PP+E +MGDFFVVRKGDVVGVYKSF+DCQAQIGSSI
Sbjct: 61  RCYSTRKPRKPRKPTSPSPKLDSEPPVESEMGDFFVVRKGDVVGVYKSFSDCQAQIGSSI 120

Query: 121 CDLPVSVYKGHSLPKDTGEYLASVGLKNALYTIKAADMRPDLFSSLVPCTFHDEATSLKG 180
           CDLPVSV+KGHSLPKDT EYLASVGLKNALYTIKAADMRPDLF SL PCTFH   TSL G
Sbjct: 121 CDLPVSVFKGHSLPKDTEEYLASVGLKNALYTIKAADMRPDLFGSLAPCTFHGGDTSLTG 180

Query: 181 EASGQDAIKKRSRETIVSENIGSTVLTPTSKDPLRKHVKLEDSVVSQA-PSNHESCFLEF 240
           E SGQDAIKKRSRE IV EN+GSTVLTPT KDP RKH+KLEDS+VS +  SN ESCFLEF
Sbjct: 181 ETSGQDAIKKRSREAIVPENVGSTVLTPTLKDPTRKHIKLEDSIVSHSVSSNRESCFLEF 240

Query: 241 DGASKGNPGQAGAGAVLRAHDGSVICRLREGLGIATNNVAEYRAILLGLKYALEKGFTRI 300
           DGASKGNPGQAGAGAVLRAHDGSVICRLREGLGIATNNVAEYRAILLGLK AL+KGFTRI
Sbjct: 241 DGASKGNPGQAGAGAVLRAHDGSVICRLREGLGIATNNVAEYRAILLGLKSALKKGFTRI 300

Query: 301 HVQGDSKLVCMQVQGLWKVKNENIAELCNEVMKLKDKFLSFEISHVLRNLNSEADAEANL 360
           HVQGDSKLVCMQVQGLWK K+EN++ELCNEV KLK+KFLSFE++HVLR+LNSEADA+ANL
Sbjct: 301 HVQGDSKLVCMQVQGLWKAKHENMSELCNEVTKLKNKFLSFEVNHVLRHLNSEADAQANL 360

Query: 361 AVTLPDGEAQEFEE 371
           A+TL +GE QEFE+
Sbjct: 361 ALTLAEGEVQEFED 373

[Close]

BLAST of Cp4.1LG11g07390 vs. TrEMBL
Match: A0A061E5R3_THECC (RNase H family protein, putative isoform 2 OS=Theobroma cacao GN=TCM_010210 PE=4 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 1.8e-107
Identity = 212/370 (57.30%), Postives = 267/370 (72.16%), Query Frame = 1


Query: 1   MNCFSQFSTYTRAIFRATNLAFAASTSIHGCRFNPYWTSSFHSVTLKPTPLDSLCSRFRL 60
           MNC S    Y  AIFR T   F  +++ + CRF P W  +F    +K   L+ L +RF  
Sbjct: 1   MNCLSHVRAYGSAIFRKTG-HFIETSTCNQCRF-PSWKRNFQHAGVKTVDLEFLLTRFHA 60

Query: 61  RCYSSRKLRKG--ASPSPNLDSKPPMEPDMGDFFVVRKGDVVGVYKSFTDCQAQIGSSIC 120
           +CYS+RK   G  A  +  +D +P ME +   F+VVRKGDVVGVYKSF DC+AQ+G SIC
Sbjct: 61  QCYSARKSSSGKKAPRTKKVDPEPVMENEKDAFYVVRKGDVVGVYKSFADCRAQVGPSIC 120

Query: 121 DLPVSVYKGHSLPKDTGEYLASVGLKNALYTIKAADMRPDLFSSLVPCTFHDEATSLKGE 180
           D PVSVYKG+SL KDT EYL S GLKNALYT++AAD++ DLF  L+PC+F + A+S KGE
Sbjct: 121 DPPVSVYKGYSLTKDTKEYLVSCGLKNALYTVRAADVKEDLFGLLMPCSFQEPASS-KGE 180

Query: 181 ASGQDAIKKRSRETIVSENIGSTVLTPTS-KDPLRKHVKLEDSVVSQAPSNHESCFLEFD 240
            S  DA KKRS++ + SE  G   L   +  DP+ KH+KL+     Q  S++ SC LEFD
Sbjct: 181 TSHMDAAKKRSQDMLKSEYGGLGALGSIAVADPVSKHIKLDPYAEVQIASSNCSCILEFD 240

Query: 241 GASKGNPGQAGAGAVLRAHDGSVICRLREGLGIATNNVAEYRAILLGLKYALEKGFTRIH 300
           GASKGNPG AGA AVLR   G VIC+LREGLGIAT N AEYRA++LGLK+AL KG++ I 
Sbjct: 241 GASKGNPGPAGAAAVLRTDTGKVICKLREGLGIATCNAAEYRAVILGLKHALRKGYSSIC 300

Query: 301 VQGDSKLVCMQVQGLWKVKNENIAELCNEVMKLKDKFLSFEISHVLRNLNSEADAEANLA 360
           V+GDSKLVCMQ+QGLWKVK+E+++EL  +  KLK+KFLSF+I+HVLR LN+EADA+ANLA
Sbjct: 301 VRGDSKLVCMQMQGLWKVKHEHMSELYEQAKKLKNKFLSFQINHVLRELNAEADAQANLA 360

Query: 361 VTLPDGEAQE 368
           V L +G+ QE
Sbjct: 361 VNLAEGQIQE 367

[Close]

BLAST of Cp4.1LG11g07390 vs. TrEMBL
Match: A0A0B0MTD0_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_25913 PE=4 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 1.5e-106
Identity = 216/374 (57.75%), Postives = 268/374 (71.66%), Query Frame = 1


Query: 1   MNCFSQFSTYTRAIFRATNLAFAASTSIHGCRFNPYWTSSFHSVTLKPTPLDSLCSRFRL 60
           MNC     TY  A+FR        STS++ C   P W  +F   ++K   L+ L +RFR 
Sbjct: 1   MNCPPHVQTYGSALFRKAGNFI--STSLNQCHV-PLWKRNFEHASVKIVDLEFLLTRFRT 60

Query: 61  RCYSSRKLR---KGASPSPNLDSKPP--MEPDMGDFFVVRKGDVVGVYKSFTDCQAQIGS 120
           +CYSSRK     K  S +  +D + P  ME +   FFVVRKGDVVGV+KSF DCQ Q+GS
Sbjct: 61  QCYSSRKSSSSTKKTSRTKKVDPEQPKVMENEKDAFFVVRKGDVVGVFKSFADCQTQVGS 120

Query: 121 SICDLPVSVYKGHSLPKDTGEYLASVGLKNALYTIKAADMRPDLFSSLVPCTFHDEATSL 180
           SICD PVSVYKG+SL K+T  YL+S GLKNA YTI+AAD++ D+F +L+PC F + A+S 
Sbjct: 121 SICDPPVSVYKGYSLTKETEIYLSSYGLKNARYTIRAADVKEDIFGALMPCPFQEPASS- 180

Query: 181 KGEASGQDAIKKRSRETIVSENIGSTVLTPTS-KDPLRKHVKLEDSVVSQAPSN-HESCF 240
           KGE S  DA KKR ++ + SE  G   L   +  DP+RKH KL+    +Q  S+ H+SC 
Sbjct: 181 KGETSHNDATKKRPQDMLQSEYGGLGSLGSIAVADPVRKHFKLDPHAEAQITSSGHQSCI 240

Query: 241 LEFDGASKGNPGQAGAGAVLRAHDGSVICRLREGLGIATNNVAEYRAILLGLKYALEKGF 300
           LEFDGASKGNPG AGA AVL+   G+VIC+LREGLGIATNN AEYRAI+LGLK+AL KG+
Sbjct: 241 LEFDGASKGNPGPAGAAAVLKTDAGNVICKLREGLGIATNNAAEYRAIILGLKHALRKGY 300

Query: 301 TRIHVQGDSKLVCMQVQGLWKVKNENIAELCNEVMKLKDKFLSFEISHVLRNLNSEADAE 360
           T I V+GDSKLVCMQ+QGLWKVK+E+++EL  + MKLKDKFLSF+I+HVLR LN EADAE
Sbjct: 301 TNIRVRGDSKLVCMQLQGLWKVKHEHMSELYEQAMKLKDKFLSFQINHVLRELNGEADAE 360

Query: 361 ANLAVTLPDGEAQE 368
           ANLAV L +G+ QE
Sbjct: 361 ANLAVKLAEGQIQE 370

[Close]

BLAST of Cp4.1LG11g07390 vs. TrEMBL
Match: A0A0D2RNX8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G185700 PE=4 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 1.5e-106
Identity = 214/369 (57.99%), Postives = 262/369 (71.00%), Query Frame = 1


Query: 1   MNCFSQFSTYTRAIFRATNLAFAASTSIHGCRFNPYWTSSFHSVTLKPTPLDSLCSRFRL 60
           MNC      Y  A+FR     F A+TS++ C   P W  +F    +K   L+ L +RFR 
Sbjct: 1   MNCLPHVRAYGSALFRKAG-NFIATTSLNQCHV-PLWRRNFEHAGVKTVDLEFLLTRFRT 60

Query: 61  RCYSSRKLRKGASPSPNLDSK-------PPMEPDMGDFFVVRKGDVVGVYKSFTDCQAQI 120
           +CYSSRK +  +S      +K       P ME +   FFVVRKGD VGV+KSF DCQAQ+
Sbjct: 61  QCYSSRKSKSSSSTKKASRTKKVHPEQPPVMENEKDAFFVVRKGDTVGVFKSFADCQAQV 120

Query: 121 GSSICDLPVSVYKGHSLPKDTGEYLASVGLKNALYTIKAADMRPDLFSSLVPCTFHDEAT 180
           GSSICD PVSVYKG+SL K+T  YL+S GLKNALYTI+AAD++ DLF +L+PC F + A+
Sbjct: 121 GSSICDPPVSVYKGYSLTKETEIYLSSCGLKNALYTIRAADVKEDLFGALMPCPFQEPAS 180

Query: 181 SLKGEASGQDAIKKRSRETIVSENIGSTVLTPTS-KDPLRKHVKLEDSVVSQAPSN-HES 240
           S KGE S  DA KKR ++ + SE  G   L   +  DP+RKH KL+    +Q  S+ H+S
Sbjct: 181 S-KGETSHNDATKKRPQDMLQSEYGGLGSLGSIAVADPVRKHFKLDPHAEAQITSSGHQS 240

Query: 241 CFLEFDGASKGNPGQAGAGAVLRAHDGSVICRLREGLGIATNNVAEYRAILLGLKYALEK 300
           C LEFDGASKGNPG AGA AVL+   G+VIC+LREGLGIATNN AEYRAI+LGLK AL K
Sbjct: 241 CILEFDGASKGNPGPAGAAAVLKTDSGNVICKLREGLGIATNNAAEYRAIILGLKQALRK 300

Query: 301 GFTRIHVQGDSKLVCMQVQGLWKVKNENIAELCNEVMKLKDKFLSFEISHVLRNLNSEAD 360
           G+T I V+GDSKLVCMQ+QGLWKVK+E+++EL  + MKLKDKFLSF+I+HVLR LN EAD
Sbjct: 301 GYTNIRVRGDSKLVCMQLQGLWKVKHEHMSELYEQAMKLKDKFLSFQINHVLRELNGEAD 360

[Close]

BLAST of Cp4.1LG11g07390 vs. TrEMBL
Match: A0A0D2SDN8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G350100 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 2.0e-106
Identity = 214/379 (56.46%), Postives = 269/379 (70.98%), Query Frame = 1


Query: 1   MNCFSQFSTYTRAIFRATNLAFAASTSIHGCRFNPYWTSSFHSVTLKPTPLDSLCSRFRL 60
           MNC      Y  A+FR T      STS++ C   P W  +F   ++K   L+ L +RFR 
Sbjct: 1   MNCLPHMHAYGSALFRKTGNFI--STSLNQCHV-PLWKRNFEDASVKTVDLEFLLTRFRT 60

Query: 61  RCYSSRKLR---KGASPSPNLDSKPP--MEPDMGDFFVVRKGDVVGVYKSFTDCQAQIGS 120
           +CYSSRK     K  S +  +D + P  ME +   FFVVRKGDVVGV+KSF DCQ Q+GS
Sbjct: 61  QCYSSRKSSSSTKKTSGTKKVDPEQPQVMENEKDAFFVVRKGDVVGVFKSFADCQTQVGS 120

Query: 121 SICDLPVSVYKGHSLPKDTGEYLASVGLKNALYTIKAADMRPDLFSSLVPCTFHDEATSL 180
           SICD PVSVYKG++L K+T  YL+S GLKNA YTI+AAD++ D+F +L+PC F + A+S 
Sbjct: 121 SICDPPVSVYKGYALTKETEIYLSSYGLKNARYTIRAADVKEDIFGALMPCPFQEPASS- 180

Query: 181 KGEASGQDAIKKRSRETIVSE------NIGSTVLTPTSKDPLRKHVKLEDSVVSQAPSN- 240
           KGE S  DA KKR ++ +  E      ++GS  +     D  RKHVKL+    +Q  S+ 
Sbjct: 181 KGETSHYDATKKRPQDMLQLEYGVGLGSLGSIAVA----DLARKHVKLDPHAEAQITSSG 240

Query: 241 HESCFLEFDGASKGNPGQAGAGAVLRAHDGSVICRLREGLGIATNNVAEYRAILLGLKYA 300
           H+SC LEFDGASKGNPG AGA AVL+   G+VIC+LREGLGIATNN AEYRA++LGLK+A
Sbjct: 241 HQSCTLEFDGASKGNPGPAGAAAVLKTDAGNVICKLREGLGIATNNAAEYRALILGLKHA 300

Query: 301 LEKGFTRIHVQGDSKLVCMQVQGLWKVKNENIAELCNEVMKLKDKFLSFEISHVLRNLNS 360
           L KG+T IHV+GDSKLVCMQ+QGLWKVK+E+++ELC + MKLKDKFLSF+I+HVLR LN 
Sbjct: 301 LRKGYTNIHVRGDSKLVCMQLQGLWKVKHEHMSELCEQAMKLKDKFLSFQINHVLRELNG 360

Query: 361 EADAEANLAVTLPDGEAQE 368
            ADAEANLAV L +G+ QE
Sbjct: 361 AADAEANLAVKLAEGQIQE 371

[Close]

BLAST of Cp4.1LG11g07390 vs. TAIR10
Match: AT1G24090.1 (AT1G24090.1 RNase H family protein)

HSP 1 Score: 318.9 bits (816), Expect = 4.0e-87
Identity = 180/367 (49.05%), Postives = 242/367 (65.94%), Query Frame = 1


Query: 1   MNCFSQFSTYTRAIFRATNLAFAASTSIHGCRFNPYWTSSFHSVTLKPTPLDSLCSRFRL 60
           MNC S   +Y  A+      ++ +S   + C F  Y  S      LKP  + S+     +
Sbjct: 1   MNCLSHARSYI-ALGLLKRSSYVSSIPWNECFF--YMPSKS---CLKPVAVSSVFGICSV 60

Query: 61  RCYSSR-KLRKGASPSPNLDSKPPMEPDMGDFFVVRKGDVVGVYKSFTDCQAQIGSSICD 120
             YSSR K  K    S  + S    E D   FFVVRKGDV+G+YK  +DCQAQ+GSS+ D
Sbjct: 61  HSYSSRSKAVKSKMLSSTVVSAVDKEKDA--FFVVRKGDVIGIYKDLSDCQAQVGSSVFD 120

Query: 121 LPVSVYKGHSLPKDTGEYLASVGLKNALYTIKAADMRPDLFSSLVPCTFHDEATSLKGEA 180
           LPVSVYKG+SLPKDT EYL+SVGLK  LY+++A+D++ D+F +L PC F + A      +
Sbjct: 121 LPVSVYKGYSLPKDTEEYLSSVGLKKPLYSLRASDLKDDMFGALTPCLFQEPAPCTVKVS 180

Query: 181 SGQDAIKKRSRETIVSENIGSTVLTPTSKDPLRKHVKLEDSVVSQAPSNHESCFLEFDGA 240
             +   + +S++    +   +++    S DPL K  K+E S    A  + E+CF+EFDGA
Sbjct: 181 EDETTSETKSKDDKKDQLPSASI----SYDPLEKLSKVEPS----AYISDETCFIEFDGA 240

Query: 241 SKGNPGQAGAGAVLRAHDGSVICRLREGLGIATNNVAEYRAILLGLKYALEKGFTRIHVQ 300
           SKGNPG +GA AVL+  DGS+ICR+R+GLGIATNN AEY A++LGLKYA+EKG+  I V+
Sbjct: 241 SKGNPGLSGAAAVLKTEDGSLICRVRQGLGIATNNAAEYHALILGLKYAIEKGYKNIKVK 300

Query: 301 GDSKLVCMQVQGLWKVKNENIAELCNEVMKLKDKFLSFEISHVLRNLNSEADAEANLAVT 360
           GDSKLVCMQ++G WKV +E +A+L  E   L +K +SFEISHVLRNLN++AD +ANLAV 
Sbjct: 301 GDSKLVCMQIKGQWKVNHEVLAKLHKEAKLLCNKCVSFEISHVLRNLNADADEQANLAVR 351

Query: 361 LPDGEAQ 367
           LP+GE +
Sbjct: 361 LPEGEVE 351

[Close]

BLAST of Cp4.1LG11g07390 vs. TAIR10
Match: AT3G01410.1 (AT3G01410.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 272.7 bits (696), Expect = 3.3e-73
Identity = 138/292 (47.26%), Postives = 197/292 (67.47%), Query Frame = 1


Query: 84  MEPDMGDFFVVRKGDVVGVYKSFTDCQAQIGSSICDLPVSVYKGHSLPKDTGEYLASVGL 143
           ME +   F++VRKGD++GVY+S ++CQ Q GSS+    +SVYKG+  PK   + L+S G+
Sbjct: 5   MEDEKDAFYIVRKGDIIGVYRSLSECQGQAGSSVSHPAMSVYKGYGWPKGAEDLLSSFGI 64

Query: 144 KNALYTIKAADMRPDLFSSLVPCTFHDEATSLKGEASGQDAIKKRSRETIVSENIGSTVL 203
           KNAL+++ A+ ++ D F  L+PC     ++S +GE+  + +  KR ++      +GS   
Sbjct: 65  KNALFSVNASHVKDDAFGKLIPCPVQQPSSS-QGESLNKSSPSKRLQD------MGSGES 124

Query: 204 TPTSKDPLRKHVKLEDSVVSQAPSN---------HESCFLEFDGASKGNPGQAGAGAVLR 263
              S  P +K +K+E+ ++ + PS+         ++SC +EFDGASKGNPG+AGAGAVLR
Sbjct: 125 GSFSPSPPQKQLKIENDMLRRIPSSLLTRTPIRQNDSCTIEFDGASKGNPGKAGAGAVLR 184

Query: 264 AHDGSVICRLREGLGIATNNVAEYRAILLGLKYALEKGFTRIHVQGDSKLVCMQVQGLWK 323
           A D SV+  LREG+G ATNNVAEYRA+LLGL+ AL+KGF  +HV GDS LVCMQVQG WK
Sbjct: 185 ASDNSVLFYLREGVGNATNNVAEYRALLLGLRSALDKGFKNVHVLGDSMLVCMQVQGAWK 244

Query: 324 VKNENIAELCNEVMKLKDKFLSFEISHVLRNLNSEADAEANLAVTLPDGEAQ 367
             +  +AELC +  +L + F +F+I H+ R  NSEAD +AN A+ L DG+ Q
Sbjct: 245 TNHPKMAELCKQAKELMNSFKTFDIKHIAREKNSEADKQANSAIFLADGQTQ 289

[Close]

BLAST of Cp4.1LG11g07390 vs. TAIR10
Match: AT5G51080.1 (AT5G51080.1 RNase H family protein)

HSP 1 Score: 182.6 bits (462), Expect = 4.5e-46
Identity = 90/162 (55.56%), Postives = 125/162 (77.16%), Query Frame = 1


Query: 205 PTSKDPLRKHVKLEDSVVSQAPSNHESCFLEFDGASKGNPGQAGAGAVLRAHDGSVICRL 264
           P++   + K  +LE S    A +++E+C +EFDGASKGNPG +GA AVL+  DGS+I ++
Sbjct: 163 PSASMSVEKLAELEPS----ADTSYETCIIEFDGASKGNPGLSGAAAVLKTEDGSLIFKM 222

Query: 265 REGLGIATNNVAEYRAILLGLKYALEKGFTRIHVQGDSKLVCMQVQGLWKVKNENIAELC 324
           R+GLGIATNN AEY  ++LGLK+A+EKG+T+I V+ DSKLVCMQ++G WKV +E +++L 
Sbjct: 223 RQGLGIATNNAAEYHGLILGLKHAIEKGYTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLH 282

Query: 325 NEVMKLKDKFLSFEISHVLRNLNSEADAEANLAVTLPDGEAQ 367
            E  +L DK LSFEISHVLR+LNS+AD +AN+A  L +GE +
Sbjct: 283 KEAKQLSDKCLSFEISHVLRSLNSDADEQANMAARLSEGEVE 320

[Close]

BLAST of Cp4.1LG11g07390 vs. NCBI nr
Match: gi|449452100|ref|XP_004143798.1| (PREDICTED: uncharacterized protein LOC101210930 isoform X1 [Cucumis sativus])

HSP 1 Score: 612.8 bits (1579), Expect = 3.8e-172
Identity = 310/374 (82.89%), Postives = 334/374 (89.30%), Query Frame = 1


Query: 1   MNCFSQFSTYTRAIFRATNLAFAASTSIHGCRFNPYWTSSFHSVTLKPTPLDSLCSRFRL 60
           MNCFSQ STYTR IFR TNL FAASTSIHGC  N YWTSSFH+V +K T LDSLCSRF L
Sbjct: 1   MNCFSQVSTYTRVIFRRTNLVFAASTSIHGCS-NAYWTSSFHNVAVKTTALDSLCSRFGL 60

Query: 61  RCYSSRKLRKG---ASPSPNLDSKPPMEPDMGDFFVVRKGDVVGVYKSFTDCQAQIGSSI 120
           RCYS+RK RK     SPSP LDS+PP+E +MGDFFVVRKGDVVGVYKSF+DCQAQIGSSI
Sbjct: 61  RCYSTRKPRKPRKPTSPSPKLDSEPPVESEMGDFFVVRKGDVVGVYKSFSDCQAQIGSSI 120

Query: 121 CDLPVSVYKGHSLPKDTGEYLASVGLKNALYTIKAADMRPDLFSSLVPCTFHDEATSLKG 180
           CDLPVSV+KGHSLPKDT EYLASVGLKNALYTIKAADMRPDLF SL PCTFH   TSL G
Sbjct: 121 CDLPVSVFKGHSLPKDTEEYLASVGLKNALYTIKAADMRPDLFGSLAPCTFHGGDTSLTG 180

Query: 181 EASGQDAIKKRSRETIVSENIGSTVLTPTSKDPLRKHVKLEDSVVSQA-PSNHESCFLEF 240
           E SGQDAIKKRSRE IV EN+GSTVLTPT KDP RKH+KLEDS+VS +  SN ESCFLEF
Sbjct: 181 ETSGQDAIKKRSREAIVPENVGSTVLTPTLKDPTRKHIKLEDSIVSHSVSSNRESCFLEF 240

Query: 241 DGASKGNPGQAGAGAVLRAHDGSVICRLREGLGIATNNVAEYRAILLGLKYALEKGFTRI 300
           DGASKGNPGQAGAGAVLRAHDGSVICRLREGLGIATNNVAEYRAILLGLK AL+KGFTRI
Sbjct: 241 DGASKGNPGQAGAGAVLRAHDGSVICRLREGLGIATNNVAEYRAILLGLKSALKKGFTRI 300

Query: 301 HVQGDSKLVCMQVQGLWKVKNENIAELCNEVMKLKDKFLSFEISHVLRNLNSEADAEANL 360
           HVQGDSKLVCMQVQGLWK K+EN++ELCNEV KLK+KFLSFE++HVLR+LNSEADA+ANL
Sbjct: 301 HVQGDSKLVCMQVQGLWKAKHENMSELCNEVTKLKNKFLSFEVNHVLRHLNSEADAQANL 360

Query: 361 AVTLPDGEAQEFEE 371
           A+TL +GE QEFE+
Sbjct: 361 ALTLAEGEVQEFED 373

[Close]

BLAST of Cp4.1LG11g07390 vs. NCBI nr
Match: gi|659131431|ref|XP_008465682.1| (PREDICTED: uncharacterized protein LOC103503315 isoform X1 [Cucumis melo])

HSP 1 Score: 612.8 bits (1579), Expect = 3.8e-172
Identity = 310/378 (82.01%), Postives = 338/378 (89.42%), Query Frame = 1


Query: 1   MNCFSQFSTYTRAIFRATNLAFAASTSIHGCRFNPYWTSSFHSVTLKPTPLDSLCSRFRL 60
           MNC SQ STYTR IFR TNL FAASTSIHGC  NPYW+S+FH+V +K T LDSLCSRF L
Sbjct: 1   MNCLSQVSTYTRVIFRRTNLVFAASTSIHGCS-NPYWSSTFHNVAVKATALDSLCSRFGL 60

Query: 61  RCYSSRKLRKG---ASPSPNLDSKPPMEPDMGDFFVVRKGDVVGVYKSFTDCQAQIGSSI 120
           RCYS+RK RK     SPSP LDS+PPME +MGDFFVVRKGDVVGVYKSF+DC AQIGSSI
Sbjct: 61  RCYSTRKPRKPRKPTSPSPKLDSEPPMESEMGDFFVVRKGDVVGVYKSFSDCHAQIGSSI 120

Query: 121 CDLPVSVYKGHSLPKDTGEYLASVGLKNALYTIKAADMRPDLFSSLVPCTFHDEATSLKG 180
           CDLPVSV+KGHSLPKD+ EYLAS+GLKNALYTIKAADMRPDLF SLVPCTFHD   SL G
Sbjct: 121 CDLPVSVFKGHSLPKDSEEYLASIGLKNALYTIKAADMRPDLFGSLVPCTFHDGDASLTG 180

Query: 181 EASGQDAIKKRSRETIVSENIGSTVLTPTS-----KDPLRKHVKLEDSVVSQAPSNHESC 240
           E SGQDAIKKRSRE IVSEN+GS+VLTPTS     +DP RKH+KLEDS+VS + SNHESC
Sbjct: 181 ETSGQDAIKKRSREAIVSENVGSSVLTPTSVTPTSEDPTRKHIKLEDSIVSLS-SNHESC 240

Query: 241 FLEFDGASKGNPGQAGAGAVLRAHDGSVICRLREGLGIATNNVAEYRAILLGLKYALEKG 300
           FLEFDGASKGNPGQAGAGAVLRAHDGSVICRLREGLGIATNNVAEYRAILLGLK+AL+KG
Sbjct: 241 FLEFDGASKGNPGQAGAGAVLRAHDGSVICRLREGLGIATNNVAEYRAILLGLKFALKKG 300

Query: 301 FTRIHVQGDSKLVCMQVQGLWKVKNENIAELCNEVMKLKDKFLSFEISHVLRNLNSEADA 360
           FTRIHVQGDSKLVCMQVQGLWK KNENI+ELCNEV+KLK+KFLSFE++HVLR+LNSEADA
Sbjct: 301 FTRIHVQGDSKLVCMQVQGLWKAKNENISELCNEVVKLKNKFLSFEVNHVLRHLNSEADA 360

Query: 361 EANLAVTLPDGEAQEFEE 371
           +ANLA+TL DGE QE E+
Sbjct: 361 QANLALTLADGEIQESED 376

[Close]

BLAST of Cp4.1LG11g07390 vs. NCBI nr
Match: gi|778703066|ref|XP_011655308.1| (PREDICTED: uncharacterized protein LOC101210930 isoform X2 [Cucumis sativus])

HSP 1 Score: 578.2 bits (1489), Expect = 1.0e-161
Identity = 292/350 (83.43%), Postives = 311/350 (88.86%), Query Frame = 1


Query: 1   MNCFSQFSTYTRAIFRATNLAFAASTSIHGCRFNPYWTSSFHSVTLKPTPLDSLCSRFRL 60
           MNCFSQ STYTR IFR TNL FAASTSIHGC  N YWTSSFH+V +K T LDSLCSRF L
Sbjct: 1   MNCFSQVSTYTRVIFRRTNLVFAASTSIHGCS-NAYWTSSFHNVAVKTTALDSLCSRFGL 60

Query: 61  RCYSSRKLRKG---ASPSPNLDSKPPMEPDMGDFFVVRKGDVVGVYKSFTDCQAQIGSSI 120
           RCYS+RK RK     SPSP LDS+PP+E +MGDFFVVRKGDVVGVYKSF+DCQAQIGSSI
Sbjct: 61  RCYSTRKPRKPRKPTSPSPKLDSEPPVESEMGDFFVVRKGDVVGVYKSFSDCQAQIGSSI 120

Query: 121 CDLPVSVYKGHSLPKDTGEYLASVGLKNALYTIKAADMRPDLFSSLVPCTFHDEATSLKG 180
           CDLPVSV+KGHSLPKDT EYLASVGLKNALYTIKAADMRPDLF SL PCTFH   TSL G
Sbjct: 121 CDLPVSVFKGHSLPKDTEEYLASVGLKNALYTIKAADMRPDLFGSLAPCTFHGGDTSLTG 180

Query: 181 EASGQDAIKKRSRETIVSENIGSTVLTPTSKDPLRKHVKLEDSVVSQA-PSNHESCFLEF 240
           E SGQDAIKKRSRE IV EN+GSTVLTPT KDP RKH+KLEDS+VS +  SN ESCFLEF
Sbjct: 181 ETSGQDAIKKRSREAIVPENVGSTVLTPTLKDPTRKHIKLEDSIVSHSVSSNRESCFLEF 240

Query: 241 DGASKGNPGQAGAGAVLRAHDGSVICRLREGLGIATNNVAEYRAILLGLKYALEKGFTRI 300
           DGASKGNPGQAGAGAVLRAHDGSVICRLREGLGIATNNVAEYRAILLGLK AL+KGFTRI
Sbjct: 241 DGASKGNPGQAGAGAVLRAHDGSVICRLREGLGIATNNVAEYRAILLGLKSALKKGFTRI 300

Query: 301 HVQGDSKLVCMQVQGLWKVKNENIAELCNEVMKLKDKFLSFEISHVLRNL 347
           HVQGDSKLVCMQVQGLWK K+EN++ELCNEV KLK+KFLSFE++HVLR L
Sbjct: 301 HVQGDSKLVCMQVQGLWKAKHENMSELCNEVTKLKNKFLSFEVNHVLRKL 349

[Close]

BLAST of Cp4.1LG11g07390 vs. NCBI nr
Match: gi|659131433|ref|XP_008465683.1| (PREDICTED: uncharacterized protein LOC103503315 isoform X2 [Cucumis melo])

HSP 1 Score: 578.2 bits (1489), Expect = 1.0e-161
Identity = 291/352 (82.67%), Postives = 315/352 (89.49%), Query Frame = 1


Query: 1   MNCFSQFSTYTRAIFRATNLAFAASTSIHGCRFNPYWTSSFHSVTLKPTPLDSLCSRFRL 60
           MNC SQ STYTR IFR TNL FAASTSIHGC  NPYW+S+FH+V +K T LDSLCSRF L
Sbjct: 1   MNCLSQVSTYTRVIFRRTNLVFAASTSIHGCS-NPYWSSTFHNVAVKATALDSLCSRFGL 60

Query: 61  RCYSSRKLRKG---ASPSPNLDSKPPMEPDMGDFFVVRKGDVVGVYKSFTDCQAQIGSSI 120
           RCYS+RK RK     SPSP LDS+PPME +MGDFFVVRKGDVVGVYKSF+DC AQIGSSI
Sbjct: 61  RCYSTRKPRKPRKPTSPSPKLDSEPPMESEMGDFFVVRKGDVVGVYKSFSDCHAQIGSSI 120

Query: 121 CDLPVSVYKGHSLPKDTGEYLASVGLKNALYTIKAADMRPDLFSSLVPCTFHDEATSLKG 180
           CDLPVSV+KGHSLPKD+ EYLAS+GLKNALYTIKAADMRPDLF SLVPCTFHD   SL G
Sbjct: 121 CDLPVSVFKGHSLPKDSEEYLASIGLKNALYTIKAADMRPDLFGSLVPCTFHDGDASLTG 180

Query: 181 EASGQDAIKKRSRETIVSENIGSTVL-----TPTSKDPLRKHVKLEDSVVSQAPSNHESC 240
           E SGQDAIKKRSRE IVSEN+GS+VL     TPTS+DP RKH+KLEDS+VS + SNHESC
Sbjct: 181 ETSGQDAIKKRSREAIVSENVGSSVLTPTSVTPTSEDPTRKHIKLEDSIVSLS-SNHESC 240

Query: 241 FLEFDGASKGNPGQAGAGAVLRAHDGSVICRLREGLGIATNNVAEYRAILLGLKYALEKG 300
           FLEFDGASKGNPGQAGAGAVLRAHDGSVICRLREGLGIATNNVAEYRAILLGLK+AL+KG
Sbjct: 241 FLEFDGASKGNPGQAGAGAVLRAHDGSVICRLREGLGIATNNVAEYRAILLGLKFALKKG 300

Query: 301 FTRIHVQGDSKLVCMQVQGLWKVKNENIAELCNEVMKLKDKFLSFEISHVLR 345
           FTRIHVQGDSKLVCMQVQGLWK KNENI+ELCNEV+KLK+KFLSFE++HVLR
Sbjct: 301 FTRIHVQGDSKLVCMQVQGLWKAKNENISELCNEVVKLKNKFLSFEVNHVLR 350

[Close]

BLAST of Cp4.1LG11g07390 vs. NCBI nr
Match: gi|659131435|ref|XP_008465684.1| (PREDICTED: uncharacterized protein LOC103503315 isoform X3 [Cucumis melo])

HSP 1 Score: 578.2 bits (1489), Expect = 1.0e-161
Identity = 291/352 (82.67%), Postives = 315/352 (89.49%), Query Frame = 1


Query: 1   MNCFSQFSTYTRAIFRATNLAFAASTSIHGCRFNPYWTSSFHSVTLKPTPLDSLCSRFRL 60
           MNC SQ STYTR IFR TNL FAASTSIHGC  NPYW+S+FH+V +K T LDSLCSRF L
Sbjct: 1   MNCLSQVSTYTRVIFRRTNLVFAASTSIHGCS-NPYWSSTFHNVAVKATALDSLCSRFGL 60

Query: 61  RCYSSRKLRKG---ASPSPNLDSKPPMEPDMGDFFVVRKGDVVGVYKSFTDCQAQIGSSI 120
           RCYS+RK RK     SPSP LDS+PPME +MGDFFVVRKGDVVGVYKSF+DC AQIGSSI
Sbjct: 61  RCYSTRKPRKPRKPTSPSPKLDSEPPMESEMGDFFVVRKGDVVGVYKSFSDCHAQIGSSI 120

Query: 121 CDLPVSVYKGHSLPKDTGEYLASVGLKNALYTIKAADMRPDLFSSLVPCTFHDEATSLKG 180
           CDLPVSV+KGHSLPKD+ EYLAS+GLKNALYTIKAADMRPDLF SLVPCTFHD   SL G
Sbjct: 121 CDLPVSVFKGHSLPKDSEEYLASIGLKNALYTIKAADMRPDLFGSLVPCTFHDGDASLTG 180

Query: 181 EASGQDAIKKRSRETIVSENIGSTVL-----TPTSKDPLRKHVKLEDSVVSQAPSNHESC 240
           E SGQDAIKKRSRE IVSEN+GS+VL     TPTS+DP RKH+KLEDS+VS + SNHESC
Sbjct: 181 ETSGQDAIKKRSREAIVSENVGSSVLTPTSVTPTSEDPTRKHIKLEDSIVSLS-SNHESC 240

Query: 241 FLEFDGASKGNPGQAGAGAVLRAHDGSVICRLREGLGIATNNVAEYRAILLGLKYALEKG 300
           FLEFDGASKGNPGQAGAGAVLRAHDGSVICRLREGLGIATNNVAEYRAILLGLK+AL+KG
Sbjct: 241 FLEFDGASKGNPGQAGAGAVLRAHDGSVICRLREGLGIATNNVAEYRAILLGLKFALKKG 300

Query: 301 FTRIHVQGDSKLVCMQVQGLWKVKNENIAELCNEVMKLKDKFLSFEISHVLR 345
           FTRIHVQGDSKLVCMQVQGLWK KNENI+ELCNEV+KLK+KFLSFE++HVLR
Sbjct: 301 FTRIHVQGDSKLVCMQVQGLWKAKNENISELCNEVVKLKNKFLSFEVNHVLR 350

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g07390 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y2253_MYCBO	5.4e-17	42.86	Uncharacterized protein Mb2253c OS=Mycobacterium bovis (strain ATCC BAA-935 / AF...	[more]
Y2228_MYCTU	5.4e-17	42.86	Uncharacterized protein Rv2228c OS=Mycobacterium tuberculosis (strain ATCC 25618...	[more]
Y2228_MYCTO	5.4e-17	42.86	Uncharacterized protein MT2287 OS=Mycobacterium tuberculosis (strain CDC 1551 / ...	[more]
RNH_HALSA	1.6e-16	40.65	Ribonuclease HI OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC...	[more]
RNHL_BACSU	2.3e-07	32.26	14.7 kDa ribonuclease H-like protein OS=Bacillus subtilis (strain 168) GN=rnhA P...	[more]

BLAST of Cp4.1LG11g07390 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTZ9_CUCSA	2.7e-172	82.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G489310 PE=4 SV=1	[more]
A0A061E5R3_THECC	1.8e-107	57.30	RNase H family protein, putative isoform 2 OS=Theobroma cacao GN=TCM_010210 PE=4...	[more]
A0A0B0MTD0_GOSAR	1.5e-106	57.75	Uncharacterized protein OS=Gossypium arboreum GN=F383_25913 PE=4 SV=1	[more]
A0A0D2RNX8_GOSRA	1.5e-106	57.99	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G185700 PE=4 SV=1	[more]
A0A0D2SDN8_GOSRA	2.0e-106	56.46	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G350100 PE=4 SV=1	[more]

BLAST of Cp4.1LG11g07390 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G24090.1	4.0e-87	49.05	RNase H family protein	[more]
AT3G01410.1	3.3e-73	47.26	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G51080.1	4.5e-46	55.56	RNase H family protein	[more]

BLAST of Cp4.1LG11g07390 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449452100\|ref\|XP_004143798.1\|	3.8e-172	82.89	PREDICTED: uncharacterized protein LOC101210930 isoform X1 [Cucumis sativus]	[more]
gi\|659131431\|ref\|XP_008465682.1\|	3.8e-172	82.01	PREDICTED: uncharacterized protein LOC103503315 isoform X1 [Cucumis melo]	[more]
gi\|778703066\|ref\|XP_011655308.1\|	1.0e-161	83.43	PREDICTED: uncharacterized protein LOC101210930 isoform X2 [Cucumis sativus]	[more]
gi\|659131433\|ref\|XP_008465683.1\|	1.0e-161	82.67	PREDICTED: uncharacterized protein LOC103503315 isoform X2 [Cucumis melo]	[more]
gi\|659131435\|ref\|XP_008465684.1\|	1.0e-161	82.67	PREDICTED: uncharacterized protein LOC103503315 isoform X3 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0004523	RNA-DNA hybrid ribonuclease activity
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf
IPR011320	RNase_H1_N
IPR002156	RNaseH_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051252	regulation of RNA metabolic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g07390.1	Cp4.1LG11g07390.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PROFILE	PS50879	RNASE_H	coord: 228..359 score: 16
IPR011320	Ribonuclease H1, N-terminal	GENE3D	G3DSA:3.40.970.10		coord: 89..133 score: 3.
IPR012337	Ribonuclease H-like domain	GENE3D	G3DSA:3.30.420.10		coord: 235..362 score: 5.7
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 231..355 score: 2.91
None	No IPR available	PANTHER	PTHR33033	FAMILY NOT NAMED	coord: 84..210 score: 4.1E-110coord: 232..370 score: 4.1E
None	No IPR available	PANTHER	PTHR33033:SF11	RNASE H DOMAIN-CONTAINING PROTEIN	coord: 232..370 score: 4.1E-110coord: 84..210 score: 4.1E
None	No IPR available	PFAM	PF13456	RVT_3	coord: 236..357 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG11g07390	CmaCh05G009250	Cucurbita maxima (Rimu)	cmacpeB767
Cp4.1LG11g07390	CmoCh05G009200	Cucurbita moschata (Rifu)	cmocpeB726
Cp4.1LG11g07390	Csa5G489310	Cucumber (Chinese Long) v2	cpecuB117
Cp4.1LG11g07390	MELO3C002906	Melon (DHL92) v3.5.1	cpemeB078
Cp4.1LG11g07390	CSPI05G16700	Wild cucumber (PI 183967)	cpecpiB115
Cp4.1LG11g07390	Lsi02G017240	Bottle gourd (USVL1VR-Ls)	cpelsiB084
Cp4.1LG11g07390	MELO3C002906.2	Melon (DHL92) v3.6.1	cpemedB100
Cp4.1LG11g07390	CsaV3_5G025720	Cucumber (Chinese Long) v3	cpecucB0129
Cp4.1LG11g07390	CsGy5G016490	Cucumber (Gy14) v2	cgybcpeB593
Cp4.1LG11g07390	Carg26435	Silver-seed gourd	carcpeB1477

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG11g07390	Silver-seed gourd	carcpeB0191
Cp4.1LG11g07390	Cucurbita pepo (Zucchini)	cpecpeB149
Cp4.1LG11g07390	Cucurbita maxima (Rimu)	cmacpeB181
Cp4.1LG11g07390	Cucurbita moschata (Rifu)	cmocpeB155
Cp4.1LG11g07390	Cucurbita moschata (Rifu)	cmocpeB721
Cp4.1LG11g07390	Watermelon (Charleston Gray)	cpewcgB123