Cp4.1LG11g07290 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG11g07290
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Single-stranded DNA-binding protein WHY3, chloroplastic
Location	Cp4.1LG11 : 6021650 .. 6025315 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTTGGCGGTGGCGGATAGCTGGTGCCGGCTGAATGGGGAGTCGCTCACTGAGCTGCAAAACCGAGTAGGATGATGGCGTAGTCGGTTTGGTTACGAACAAATTTGGCTCAATCGTCTTCCCCTAGCCTTAAACGAACAAGGAATCACATTCTTTTGGGCAATAAACATCTCGAGAGTACACAAAAAGAATCTAGCAGCAAGTAGAACATTGAAGGAGTTCGAAACGTTAAGGGGCTGGAGGACTACACTCGTTTGTGAGGGCTCGCTAATTAAGAACATGGGCTTATAAATAAGGAATACAGGAGCCTTATAAATAGGTTCTACTTTTACGCTTATCCATAGAACATTTTGGTTACGAAAGGATATAAAACTTTGTAGGGCCATGAGCTTTGGCGGTGAAAAAATGGCGCTCTAACTCCTGCCGGTTGTCTCTCTAATCCTCTGCGAAGACGAAGCCGAAACCATGCTGCGTCTTCAATGCCTTTCTTCTTCATTGCTTCCGCCATTAATCCCCGAACTCTCGCCGGAAACCTCTTCGAACCGCCGACTATGTCGCCTCAACTCCTTTCGCCCACTCCTCACTCTCTCTACTACACCAAAATCTTCTCCAAAGTGTCAATACTCCTGGAACACGCAGCAGCATCAGGCGGCCTTCGAATCCGGCTCTCAGACGGATTCATTTTCCTCACAAACTCGCGCCGGAGGTACTTCTTTATCCCTTTCCTTTCAAGTTTTTTCGGGAAGAACTTCGTGTATCCTGTAGTATTGATGCTATTTGGAAATTTTGGTTCATGTTGGAAGGAAAATGTAGTATATAGCTCCGTTTGTGACTGATTTTGTTTAACCGTGGATGGACTGAATTATTATGACCTTGTTTTCTTTTTGCTTATCTCCTATTCCTCAAATTTTACTGGATTACTTAGAACTGATTCAATTTCAAGGAGCTCTCCAAATCCAGGGGCATTTTTCTTGAAATTCTTTGTTTATTCCTTGTTAGTTGTTTTGATTTCTCGGGTTCTGAAGTGTTTATGGTTTGGCTTGTTTGTAGCTGCTGCAGCATTGCCACCAAGGTTTTTTGTTGGTCATTCAATATACAAAGGGAAGGCTGCTCTTACAGTTGAGCCTAGGCCACCAGAGTTCACACCTCTAGATGTATGTTTGACTTGAATTCTGAGCTTTAAATCATGATAGGCTGTTTTTCCTCGTTAGTTCTTTCTTTATGGTTATTAATCTTTTAAAATTTGTCAGTCAGGGGCGTTCAAAATATCCAGGGAAGGATTTGTGTTGCTTCAGTTTGCCCCAGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTTCTAAAAAACAAGCTGATATTTAACTTAGCTTAAGTGAAATTCTAGGTTAATGCTGATTACTATTCCACTGGTTTCATATTGGGCATCTGTAGTATCATTTCCATGATGGAGTCGATGAGATTGAAAATACCAAGACATGTTTGGGGAGCTGTGTTCATCATTCGTTTTTCTAATTATTTTTAAGAACAAAAATAGATGCTGTCTTGTAAAGATTAAATCATTGTGCAATTGAAATCACTAAATCAGACAGTGAAGAACTTTTCGTGAAAACCATTCCCTTGTCTTTATTGTTTATAATAATTTTCTGATATGTACCAATTAGATTATAGTTTGTTTTGTATGTAGGTATTCTCTTTATCAGTGACAGAATTGGGAAGTCTAGTTGCCCTGGGCCCACGCGAATCTTGTGAACTCTTTCACGATCCCTATAAGGGAAAAAGGTACCATCTAAACTTGTACTTTTAGAAACTACGACTCTCTACAATGGTATGATATTGTCCACTTTGTGCATAAGCTCTCATGGTTTTGCTTTTGGAATCCCTTAGTTAGTCGATGTGTGACTCCTCTCCCAACAATCCTCAACAATCCTCCCCTCGAACAAAGTACACTATAGAGCTTCCCCTGAGGCTTATGGAGCCCTCGAATAGCCTCTCCTTAATCGAGGCTAGACTGCTTCTCTAGAGCCCTTGAACAAAGTACATCCTTTGTTCGACACTTGAGTCACTTTTGACTACACCTTCGAGCCTCACAACTTCTTTGTTCGACACTTGAGGATTCTATTGACATGGCTCTTATACCATGTTAGAAACCATGACTCTCCAAAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGACTTTGTTTTTGGTTTCCCTGAAAGGCTTCATACCAACGGAGATAGTATTCGTTACTTATAAACCCATAATCAACCCCTTAATGAACCGATGTGAGACTCCTCTTCCAACAATCCTCAACATATACCATTCGTTGAGTCGTATTCATGTTTAGGTATTGTGCATCTTTGGTTTCCTCAAATATTTTGCTCTTCTTAGATCTCAAAATTGCTTGATTTTAACATTGAAAACAATGACGCATCGATCTTTTTCGTAGCACAAACCACCCCCTTCTTGAGTGTACATGCTGACCATTTTCTTTTTAATAGCCAAATATTTAGGTCGTAAGTTGTTTGTAAACAAAGGTCTGCAGGTTTGAAAACATAGTATGTTATGATAACAAGAGACAAAATATTTGTTCTACAGTGATGAAGGGAAGGTCAGAAAGATACTAAAAGTGGAGCCTCTTCCGGATGGTTCTGGCCGTTTTTTCAACCTCAGTAAGTCTTGTGTTGAAACCTTCATGATCCATTGAGGTTGAATGTAAACTGCAATGATGCTAGAGAAAGTCTTTATTTTATCCCCTTAACTTTTCTGTTCTATTTTGTTGCACAAGGCGTTCAGAACAAGCTAACCAACGTGGATGAGAGCATTTATATTCCCATCACCAAAGCAGAGTATACTGTACTTGTTGAGGCTTTTAAGGTAAAGTTCTTTCCAGTTTACATGCTTATCTTTCTTCTCAAGCTTGTTTGATTCGATTAGGACGCATGATCGAGACCATAGAGTGATAAACTGGCGTGTATGATTTGGGTCACTTCGAAACTGCAAAATTTCAGAAAAATAACTACTAAACAACTATAATTGAATTGGTTCGGTTGGTTTAAGAAACACATATTTGTCTGGTTCAGTTTCATTAAGTTTAAAATTGACAATTAGTCGGCTGATTCAGTTTTATCACTTTGTGTTTGTGTAACGGCTCAAGCTTATCGTTAGCAGATATGGATTGTGAGTTCCCACGTCGGTTGATGATCCCTCTACTCTTACAAATTTTGTGATTATAATTGGTAGACTGTATGTTTATTCATTATTTGTGCAGTTTATCTTGCCGCACCTTATGGGTTGGCATGCAATTGCAAACAGCATGACAAGAACAGAAGATAACAGGCGAGCAAATGACGCGAATCCCAGATATGGCGGTGACTTTGAATGGAGCAGATAGTCTCTACTTGGATGGAGACGATTGTTGTTGTGCTCGTAATCTTTCACAGATTGCTATTCACTCTCTTCTTTATCTCGTTTTGCATATTAGTTTTAAATATTATTTTGGGAGTTACTGAGTTTTTGCACCCAAATATTGGGTTTACTTAATTCTCCCTTCTTAATTTATTAGCCATTTTAATATTTGAATGTCATAAAAAAATATATTTTTTATTTTAATTTTAGGCTCAATTTTATATATAAAAAATAGTTACTTCTAC

mRNA sequence

TGTTGGCGGTGGCGGATAGCTGGTGCCGGCTGAATGGGGAGTCGCTCACTGAGCTGCAAAACCGAGTAGGATGATGGCGTAGTCGGTTTGGTTACGAACAAATTTGGCTCAATCGTCTTCCCCTAGCCTTAAACGAACAAGGAATCACATTCTTTTGGGCAATAAACATCTCGAGAGTACACAAAAAGAATCTAGCAGCAAGTAGAACATTGAAGGAGTTCGAAACGTTAAGGGGCTGGAGGACTACACTCGTTTGTGAGGGCTCGCTAATTAAGAACATGGGCTTATAAATAAGGAATACAGGAGCCTTATAAATAGGTTCTACTTTTACGCTTATCCATAGAACATTTTGGTTACGAAAGGATATAAAACTTTGTAGGGCCATGAGCTTTGGCGGTGAAAAAATGGCGCTCTAACTCCTGCCGGTTGTCTCTCTAATCCTCTGCGAAGACGAAGCCGAAACCATGCTGCGTCTTCAATGCCTTTCTTCTTCATTGCTTCCGCCATTAATCCCCGAACTCTCGCCGGAAACCTCTTCGAACCGCCGACTATGTCGCCTCAACTCCTTTCGCCCACTCCTCACTCTCTCTACTACACCAAAATCTTCTCCAAAGTGTCAATACTCCTGGAACACGCAGCAGCATCAGGCGGCCTTCGAATCCGGCTCTCAGACGGATTCATTTTCCTCACAAACTCGCGCCGGAGCTGCTGCAGCATTGCCACCAAGGTTTTTTGTTGGTCATTCAATATACAAAGGGAAGGCTGCTCTTACAGTTGAGCCTAGGCCACCAGAGTTCACACCTCTAGATTCAGGGGCGTTCAAAATATCCAGGGAAGGATTTGTGTTGCTTCAGTTTGCCCCAGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTCTCTTTATCAGTGACAGAATTGGGAAGTCTAGTTGCCCTGGGCCCACGCGAATCTTGCGTTCAGAACAAGCTAACCAACGTGGATGAGAGCATTTATATTCCCATCACCAAAGCAGAGTATACTGTACTTGTTGAGGCTTTTAAGTTTATCTTGCCGCACCTTATGGGTTGGCATGCAATTGCAAACAGCATGACAAGAACAGAAGATAACAGGCGAGCAAATGACGCGAATCCCAGATATGGCGGTGACTTTGAATGGAGCAGATAGTCTCTACTTGGATGGAGACGATTGTTGTTGTGCTCGTAATCTTTCACAGATTGCTATTCACTCTCTTCTTTATCTCGTTTTGCATATTAGTTTTAAATATTATTTTGGGAGTTACTGAGTTTTTGCACCCAAATATTGGGTTTACTTAATTCTCCCTTCTTAATTTATTAGCCATTTTAATATTTGAATGTCATAAAAAAATATATTTTTTATTTTAATTTTAGGCTCAATTTTATATATAAAAAATAGTTACTTCTAC

Coding sequence (CDS)

ATGCTGCGTCTTCAATGCCTTTCTTCTTCATTGCTTCCGCCATTAATCCCCGAACTCTCGCCGGAAACCTCTTCGAACCGCCGACTATGTCGCCTCAACTCCTTTCGCCCACTCCTCACTCTCTCTACTACACCAAAATCTTCTCCAAAGTGTCAATACTCCTGGAACACGCAGCAGCATCAGGCGGCCTTCGAATCCGGCTCTCAGACGGATTCATTTTCCTCACAAACTCGCGCCGGAGCTGCTGCAGCATTGCCACCAAGGTTTTTTGTTGGTCATTCAATATACAAAGGGAAGGCTGCTCTTACAGTTGAGCCTAGGCCACCAGAGTTCACACCTCTAGATTCAGGGGCGTTCAAAATATCCAGGGAAGGATTTGTGTTGCTTCAGTTTGCCCCAGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTCTCTTTATCAGTGACAGAATTGGGAAGTCTAGTTGCCCTGGGCCCACGCGAATCTTGCGTTCAGAACAAGCTAACCAACGTGGATGAGAGCATTTATATTCCCATCACCAAAGCAGAGTATACTGTACTTGTTGAGGCTTTTAAGTTTATCTTGCCGCACCTTATGGGTTGGCATGCAATTGCAAACAGCATGACAAGAACAGAAGATAACAGGCGAGCAAATGACGCGAATCCCAGATATGGCGGTGACTTTGAATGGAGCAGATAG

Protein sequence

MLRLQCLSSSLLPPLIPELSPETSSNRRLCRLNSFRPLLTLSTTPKSSPKCQYSWNTQQHQAAFESGSQTDSFSSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESCVQNKLTNVDESIYIPITKAEYTVLVEAFKFILPHLMGWHAIANSMTRTEDNRRANDANPRYGGDFEWSR

Homology

[Close]

BLAST of Cp4.1LG11g07290 vs. Swiss-Prot
Match: WHY3_ARATH (Single-stranded DNA-binding protein WHY3, chloroplastic OS=Arabidopsis thaliana GN=WHY3 PE=1 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 1.1e-60
Identity = 123/210 (58.57%), Postives = 145/210 (69.05%), Query Frame = 1


Query: 64  FESGSQTDSFSSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISR 123
           FE     DS SSQ     A    PRF+VGHSIYKGKAALT+EPR PEF  L+SGAFK+++
Sbjct: 64  FEKQRFGDSSSSQN----AEVSSPRFYVGHSIYKGKAALTIEPRAPEFVALESGAFKLTK 123

Query: 124 EGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESC---------------- 183
           EGF+LLQFAPAAGVRQYDWSRKQVFSLSVTE+G+LV+LGPRESC                
Sbjct: 124 EGFLLLQFAPAAGVRQYDWSRKQVFSLSVTEIGNLVSLGPRESCEFFHDPFKGKGSDEGK 183

Query: 184 ---------------------VQNKLTNVDESIYIPITKAEYTVLVEAFKFILPHLMGWH 237
                                VQNKL NVDES+YIPITKAE+ VL+ AF F+LPHL+GW 
Sbjct: 184 VRKVLKVEPLPDGSGRFFNLSVQNKLLNVDESVYIPITKAEFAVLISAFNFVLPHLIGWS 243

[Close]

BLAST of Cp4.1LG11g07290 vs. Swiss-Prot
Match: WHY1_ARATH (Single-stranded DNA-binding protein WHY1, chloroplastic OS=Arabidopsis thaliana GN=WHY1 PE=1 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 9.6e-60
Identity = 119/210 (56.67%), Postives = 144/210 (68.57%), Query Frame = 1


Query: 69  QTDSFSSQ------TRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKIS 128
           QTD F  Q      +    A  LP RF+VGHSIYKGKAALTV+PR PEF  LDSGAFK+S
Sbjct: 55  QTDYFEKQRFGDSSSSPSPAEGLPARFYVGHSIYKGKAALTVDPRAPEFVALDSGAFKLS 114

Query: 129 REGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESC--------------- 188
           ++GF+LLQFAP+AGVRQYDWS+KQVFSLSVTE+G+LV+LGPRESC               
Sbjct: 115 KDGFLLLQFAPSAGVRQYDWSKKQVFSLSVTEIGTLVSLGPRESCEFFHDPFKGKSDEGK 174

Query: 189 ---------------------VQNKLTNVDESIYIPITKAEYTVLVEAFKFILPHLMGWH 237
                                VQNKL NVDESIYIPIT+AE+ VL+ AF F+LP+L+GWH
Sbjct: 175 VRKVLKVEPLPDGSGHFFNLSVQNKLVNVDESIYIPITRAEFAVLISAFNFVLPYLIGWH 234

[Close]

BLAST of Cp4.1LG11g07290 vs. Swiss-Prot
Match: WHY1_SOLTU (Single-stranded DNA-binding protein WHY1, chloroplastic OS=Solanum tuberosum GN=WHY1 PE=1 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 9.3e-39
Identity = 95/216 (43.98%), Postives = 123/216 (56.94%), Query Frame = 1


Query: 57  TQQHQAAFESGSQTDSFSSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDS 116
           T +H   FE   Q      Q +  +     P+ FVG+SIYKGKAALTVEPR PEF+PLDS
Sbjct: 64  TCRHSDYFEPQQQQQQQQQQPQGAST----PKVFVGYSIYKGKAALTVEPRSPEFSPLDS 123

Query: 117 GAFKISREGFVLLQFAPAAGVRQ-------------------------------YDWSRK 176
           GAFK+SREG V+LQFAPAAGVRQ                               +D ++ 
Sbjct: 124 GAFKLSREGMVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSIISLGAKDSCEFFHDPNKG 183

Query: 177 QVFSLSVTELGSLVALGPRES-----CVQNKLTNVDESIYIPITKAEYTVLVEAFKFILP 236
           +     V ++  +  L           VQNKL N+DE+IYIP+TKAE+ VLV AF F++P
Sbjct: 184 RSDEGRVRKVLKVEPLPDGSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSAFNFVMP 243

[Close]

BLAST of Cp4.1LG11g07290 vs. Swiss-Prot
Match: WHY1_MAIZE (Single-stranded DNA-binding protein WHY1, chloroplastic OS=Zea mays GN=WHY1 PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.0e-28
Identity = 56/80 (70.00%), Postives = 68/80 (85.00%), Query Frame = 1


Query: 88  RFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQV 147
           R F  +SIYKGKAAL+ +PRPP F PLDSGA+K+++EGFVLLQFAPA   RQYDW+RKQV
Sbjct: 85  RVFTSYSIYKGKAALSFDPRPPLFVPLDSGAYKVAKEGFVLLQFAPAVATRQYDWTRKQV 144

Query: 148 FSLSVTELGSLVALGPRESC 168
           FSLSV E+G+L+ LGP +SC
Sbjct: 145 FSLSVWEIGTLLTLGPTDSC 164

[Close]

BLAST of Cp4.1LG11g07290 vs. Swiss-Prot
Match: WHY2_SOLTU (Single-stranded DNA-bindig protein WHY2, mitochondrial OS=Solanum tuberosum GN=WHY2 PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.5e-25
Identity = 62/159 (38.99%), Postives = 88/159 (55.35%), Query Frame = 1


Query: 88  RFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQV 147
           R F  +S++KGKAAL+ EPR P F  LDSG  K++R G ++L F P+ G R+YDW ++Q+
Sbjct: 56  RVFAPYSVFKGKAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQL 115

Query: 148 FSLSVTELGSLVALGPRESC---------------VQNKLT---NVDESIY--------- 207
           F+LS TE+GSL+++G R+S                V+  L+   N D S Y         
Sbjct: 116 FALSATEVGSLISMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNN 175

Query: 208 ---------IPITKAEYTVLVEAFKFILPHLMGWHAIAN 211
                    +P+T AE+ V+  AF F LPH+MGW    N
Sbjct: 176 NLKTNDRFTVPVTTAEFAVMRTAFSFALPHIMGWDRFTN 214

[Close]

BLAST of Cp4.1LG11g07290 vs. TrEMBL
Match: A0A0A0KG25_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G404240 PE=4 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 3.9e-100
Identity = 199/276 (72.10%), Postives = 210/276 (76.09%), Query Frame = 1


Query: 1   MLRLQCLSSSLLPPLIPELSPETSSNRRLCRLNSFRPLLTLSTTPKSSPKCQYSWNTQQH 60
           MLRLQCLSSS LP   PELSPET SN RLC LN  RPL TL+TT K + KCQYSWNTQQH
Sbjct: 1   MLRLQCLSSSFLPTFNPELSPETLSNPRLCTLNFSRPLPTLTTTRKPTSKCQYSWNTQQH 60

Query: 61  Q-AAFESGSQTDSFSSQTRAGAAA---ALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDS 120
           Q +AFE    TDS S Q+RAGAAA   ALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDS
Sbjct: 61  QQSAFEPAPHTDSLSPQSRAGAAAAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDS 120

Query: 121 GAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESC--------- 180
           GAFKISREG V+LQFAPAAGVRQYDWSRKQVFSLSVTELGSL+ALGPRE+C         
Sbjct: 121 GAFKISREGLVMLQFAPAAGVRQYDWSRKQVFSLSVTELGSLIALGPREACEFFHDPYKG 180

Query: 181 ---------------------------VQNKLTNVDESIYIPITKAEYTVLVEAFKFILP 237
                                      VQNKL NVDESIYIPITKAEYTVLVEAFKFILP
Sbjct: 181 KSDEGKVRKILKVEPLPDGSGHFFNLTVQNKLINVDESIYIPITKAEYTVLVEAFKFILP 240

[Close]

BLAST of Cp4.1LG11g07290 vs. TrEMBL
Match: A0A0D2SAD5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G077400 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 5.3e-65
Identity = 155/281 (55.16%), Postives = 175/281 (62.28%), Query Frame = 1


Query: 1   MLRLQCLSSSLLPPLI--------PELSPETSS-NRRLCRLNSFRPLLTLSTTPKSSPKC 60
           ML+LQ LSS  L P          P+L P  SS N    R   F PL   S   K S KC
Sbjct: 1   MLQLQLLSSPPLTPQTLNLNSISNPKLFPSFSSLNSSQTRSFKFNPL---SKPSKFSLKC 60

Query: 61  QYSWNTQQHQAAFESGSQTDSFSSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEF 120
           + S    Q Q   +S       SS T   + A LP RF+VGHSIYKGKAALTVEPR PEF
Sbjct: 61  RQSEYFDQKQRFNDS-------SSSTSPSSLAGLPARFYVGHSIYKGKAALTVEPRAPEF 120

Query: 121 TPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESC---- 180
            PLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTE+G+L++LG RESC    
Sbjct: 121 VPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTEIGTLISLGMRESCEFFH 180

Query: 181 --------------------------------VQNKLTNVDESIYIPITKAEYTVLVEAF 237
                                           VQNKL NVDE++YIPIT+ E+TVL  AF
Sbjct: 181 DPFKGKSDEGKVRKVLKVEPLPDGSGHFFNLGVQNKLLNVDENVYIPITRGEFTVLKSAF 240

[Close]

BLAST of Cp4.1LG11g07290 vs. TrEMBL
Match: A0A061EAM1_THECC (SsDNA-binding transcriptional regulator isoform 1 OS=Theobroma cacao GN=TCM_011795 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 2.6e-64
Identity = 148/279 (53.05%), Postives = 178/279 (63.80%), Query Frame = 1


Query: 1   MLRLQCLSSSLLPPLIPELSPETSSNRRLCRLNSFRPLLT-------LSTTPKSSPKCQY 60
           ML+LQ LSS   PPL  +     S+   L   +S +   T       LS TPK S     
Sbjct: 1   MLQLQFLSS---PPLSAQSLNPNSNTNLLSSFSSLKSTQTHAFKLNPLSLTPKPS----- 60

Query: 61  SWNTQQHQAAFESGSQTDSFSSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTP 120
            ++ +  Q+ +    Q  S SS T +  A+ LPPRF+VGHS+YKGKAALTVEPR PEF P
Sbjct: 61  KFSLKCRQSEYFDQQQRFSNSSSTASPPASGLPPRFYVGHSVYKGKAALTVEPRAPEFVP 120

Query: 121 LDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESC------ 180
           LDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTE+G+L++LG RESC      
Sbjct: 121 LDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTEIGALISLGARESCEFFHDP 180

Query: 181 ------------------------------VQNKLTNVDESIYIPITKAEYTVLVEAFKF 237
                                         VQN+L N+DE+IYIPIT+AE+TVL  AF F
Sbjct: 181 FKGKSEEGKVRKVLKVEPLPDGSGHFFNLGVQNRLLNLDENIYIPITRAEFTVLNSAFSF 240

[Close]

BLAST of Cp4.1LG11g07290 vs. TrEMBL
Match: A0A0D2VAT0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G077400 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 2.6e-64
Identity = 154/281 (54.80%), Postives = 173/281 (61.57%), Query Frame = 1


Query: 1   MLRLQCLSSSLLPPLI--------PELSPETSS-NRRLCRLNSFRPLLTLSTTPKSSPKC 60
           ML+LQ LSS  L P          P+L P  SS N    R   F PL   S   K S KC
Sbjct: 1   MLQLQLLSSPPLTPQTLNLNSISNPKLFPSFSSLNSSQTRSFKFNPL---SKPSKFSLKC 60

Query: 61  QYSWNTQQHQAAFESGSQTDSFSSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEF 120
           + S    Q Q   +S S T   S          LP RF+VGHSIYKGKAALTVEPR PEF
Sbjct: 61  RQSEYFDQKQRFNDSSSSTSPSS--------LGLPARFYVGHSIYKGKAALTVEPRAPEF 120

Query: 121 TPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESC---- 180
            PLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTE+G+L++LG RESC    
Sbjct: 121 VPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTEIGTLISLGMRESCEFFH 180

Query: 181 --------------------------------VQNKLTNVDESIYIPITKAEYTVLVEAF 237
                                           VQNKL NVDE++YIPIT+ E+TVL  AF
Sbjct: 181 DPFKGKSDEGKVRKVLKVEPLPDGSGHFFNLGVQNKLLNVDENVYIPITRGEFTVLKSAF 240

[Close]

BLAST of Cp4.1LG11g07290 vs. TrEMBL
Match: A0A0D2SAD9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G077400 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 3.4e-64
Identity = 153/280 (54.64%), Postives = 174/280 (62.14%), Query Frame = 1


Query: 1   MLRLQCLSSSLLPPLI--------PELSPETSS-NRRLCRLNSFRPLLTLSTTPKSSPKC 60
           ML+LQ LSS  L P          P+L P  SS N    R   F PL   S   K S KC
Sbjct: 1   MLQLQLLSSPPLTPQTLNLNSISNPKLFPSFSSLNSSQTRSFKFNPL---SKPSKFSLKC 60

Query: 61  QYSWNTQQHQAAFESGSQTDSFSSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEF 120
           + S    Q Q   +S       SS T   + A LP RF+VGHSIYKGKAALTVEPR PEF
Sbjct: 61  RQSEYFDQKQRFNDS-------SSSTSPSSLAGLPARFYVGHSIYKGKAALTVEPRAPEF 120

Query: 121 TPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESC---- 180
            PLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTE+G+L++LG RESC    
Sbjct: 121 VPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTEIGTLISLGMRESCEFFH 180

Query: 181 --------------------------------VQNKLTNVDESIYIPITKAEYTVLVEAF 236
                                           VQNKL NVDE++YIPIT+ E+TVL  AF
Sbjct: 181 DPFKGKSDEGKVRKVLKVEPLPDGSGHFFNLGVQNKLLNVDENVYIPITRGEFTVLKSAF 240

[Close]

BLAST of Cp4.1LG11g07290 vs. TAIR10
Match: AT2G02740.1 (AT2G02740.1 ssDNA-binding transcriptional regulator)

HSP 1 Score: 234.6 bits (597), Expect = 6.4e-62
Identity = 123/210 (58.57%), Postives = 145/210 (69.05%), Query Frame = 1


Query: 64  FESGSQTDSFSSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISR 123
           FE     DS SSQ     A    PRF+VGHSIYKGKAALT+EPR PEF  L+SGAFK+++
Sbjct: 64  FEKQRFGDSSSSQN----AEVSSPRFYVGHSIYKGKAALTIEPRAPEFVALESGAFKLTK 123

Query: 124 EGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESC---------------- 183
           EGF+LLQFAPAAGVRQYDWSRKQVFSLSVTE+G+LV+LGPRESC                
Sbjct: 124 EGFLLLQFAPAAGVRQYDWSRKQVFSLSVTEIGNLVSLGPRESCEFFHDPFKGKGSDEGK 183

Query: 184 ---------------------VQNKLTNVDESIYIPITKAEYTVLVEAFKFILPHLMGWH 237
                                VQNKL NVDES+YIPITKAE+ VL+ AF F+LPHL+GW 
Sbjct: 184 VRKVLKVEPLPDGSGRFFNLSVQNKLLNVDESVYIPITKAEFAVLISAFNFVLPHLIGWS 243

[Close]

BLAST of Cp4.1LG11g07290 vs. TAIR10
Match: AT1G14410.1 (AT1G14410.1 ssDNA-binding transcriptional regulator)

HSP 1 Score: 231.5 bits (589), Expect = 5.4e-61
Identity = 119/210 (56.67%), Postives = 144/210 (68.57%), Query Frame = 1


Query: 69  QTDSFSSQ------TRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKIS 128
           QTD F  Q      +    A  LP RF+VGHSIYKGKAALTV+PR PEF  LDSGAFK+S
Sbjct: 55  QTDYFEKQRFGDSSSSPSPAEGLPARFYVGHSIYKGKAALTVDPRAPEFVALDSGAFKLS 114

Query: 129 REGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESC--------------- 188
           ++GF+LLQFAP+AGVRQYDWS+KQVFSLSVTE+G+LV+LGPRESC               
Sbjct: 115 KDGFLLLQFAPSAGVRQYDWSKKQVFSLSVTEIGTLVSLGPRESCEFFHDPFKGKSDEGK 174

Query: 189 ---------------------VQNKLTNVDESIYIPITKAEYTVLVEAFKFILPHLMGWH 237
                                VQNKL NVDESIYIPIT+AE+ VL+ AF F+LP+L+GWH
Sbjct: 175 VRKVLKVEPLPDGSGHFFNLSVQNKLVNVDESIYIPITRAEFAVLISAFNFVLPYLIGWH 234

[Close]

BLAST of Cp4.1LG11g07290 vs. TAIR10
Match: AT1G71260.1 (AT1G71260.1 WHIRLY 2)

HSP 1 Score: 98.2 bits (243), Expect = 7.1e-21
Identity = 57/144 (39.58%), Postives = 81/144 (56.25%), Query Frame = 1


Query: 80  GAAAALPP-RFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVR 139
           G  AA P  R F  +SI+KGKAAL+VEP  P FT +DSG  +I R G +++ F PA G R
Sbjct: 44  GKDAAKPSGRLFAPYSIFKGKAALSVEPVLPSFTEIDSGNLRIDRRGSLMMTFMPAIGER 103

Query: 140 QYDWSRKQVFSLSVTELGSLVALGPRESCVQNKLTNVDESIYIPITKAEYTVLVEAFKFI 199
           +YDW +KQ F+LS TE+GSL+++G ++S          E  + P  K+     V     +
Sbjct: 104 KYDWEKKQKFALSPTEVGSLISMGSKDS---------SEFFHDPSMKSSNAGQVRKSLSV 163

Query: 200 LPHLMGWH-----AIANSMTRTED 218
            PH  G       ++ NS+ +T D
Sbjct: 164 KPHADGSGYFISLSVNNSILKTND 178

[Close]

BLAST of Cp4.1LG11g07290 vs. NCBI nr
Match: gi|659113233|ref|XP_008456468.1| (PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 384.8 bits (987), Expect = 1.1e-103
Identity = 203/273 (74.36%), Postives = 214/273 (78.39%), Query Frame = 1


Query: 1   MLRLQCLSSSLLPPLIPELSPETSSNRRLCRLNSFRPLLTLSTTPKSSPKCQYSWNTQQH 60
           MLRLQ LSSSLLP   PELSPET SN RLC LN  RPLLTL+TT K SPKCQYSWNT QH
Sbjct: 1   MLRLQWLSSSLLPTFNPELSPETLSNPRLCSLNFRRPLLTLTTTRKPSPKCQYSWNTHQH 60

Query: 61  Q-AAFESGSQTDSFSSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAF 120
           Q ++FE  SQTDSFS Q+RAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAF
Sbjct: 61  QQSSFEPASQTDSFSPQSRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAF 120

Query: 121 KISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESC------------ 180
           KISREG V+LQFAPAAGVRQYDWSRKQVFSLSVTELGSL+ALGPRE+C            
Sbjct: 121 KISREGLVMLQFAPAAGVRQYDWSRKQVFSLSVTELGSLIALGPREACEFFHDPYKGKSD 180

Query: 181 ------------------------VQNKLTNVDESIYIPITKAEYTVLVEAFKFILPHLM 237
                                   VQNKL NVDESIYIPITKAEYTVLVEAFKFILPHLM
Sbjct: 181 EGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLM 240

[Close]

BLAST of Cp4.1LG11g07290 vs. NCBI nr
Match: gi|778715953|ref|XP_011657483.1| (PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 372.5 bits (955), Expect = 5.6e-100
Identity = 199/276 (72.10%), Postives = 210/276 (76.09%), Query Frame = 1


Query: 1   MLRLQCLSSSLLPPLIPELSPETSSNRRLCRLNSFRPLLTLSTTPKSSPKCQYSWNTQQH 60
           MLRLQCLSSS LP   PELSPET SN RLC LN  RPL TL+TT K + KCQYSWNTQQH
Sbjct: 1   MLRLQCLSSSFLPTFNPELSPETLSNPRLCTLNFSRPLPTLTTTRKPTSKCQYSWNTQQH 60

Query: 61  Q-AAFESGSQTDSFSSQTRAGAAA---ALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDS 120
           Q +AFE    TDS S Q+RAGAAA   ALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDS
Sbjct: 61  QQSAFEPAPHTDSLSPQSRAGAAAAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDS 120

Query: 121 GAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESC--------- 180
           GAFKISREG V+LQFAPAAGVRQYDWSRKQVFSLSVTELGSL+ALGPRE+C         
Sbjct: 121 GAFKISREGLVMLQFAPAAGVRQYDWSRKQVFSLSVTELGSLIALGPREACEFFHDPYKG 180

Query: 181 ---------------------------VQNKLTNVDESIYIPITKAEYTVLVEAFKFILP 237
                                      VQNKL NVDESIYIPITKAEYTVLVEAFKFILP
Sbjct: 181 KSDEGKVRKILKVEPLPDGSGHFFNLTVQNKLINVDESIYIPITKAEYTVLVEAFKFILP 240

[Close]

BLAST of Cp4.1LG11g07290 vs. NCBI nr
Match: gi|823261095|ref|XP_012463275.1| (PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic-like isoform X1 [Gossypium raimondii])

HSP 1 Score: 255.8 bits (652), Expect = 7.6e-65
Identity = 155/281 (55.16%), Postives = 175/281 (62.28%), Query Frame = 1


Query: 1   MLRLQCLSSSLLPPLI--------PELSPETSS-NRRLCRLNSFRPLLTLSTTPKSSPKC 60
           ML+LQ LSS  L P          P+L P  SS N    R   F PL   S   K S KC
Sbjct: 1   MLQLQLLSSPPLTPQTLNLNSISNPKLFPSFSSLNSSQTRSFKFNPL---SKPSKFSLKC 60

Query: 61  QYSWNTQQHQAAFESGSQTDSFSSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEF 120
           + S    Q Q   +S       SS T   + A LP RF+VGHSIYKGKAALTVEPR PEF
Sbjct: 61  RQSEYFDQKQRFNDS-------SSSTSPSSLAGLPARFYVGHSIYKGKAALTVEPRAPEF 120

Query: 121 TPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESC---- 180
            PLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTE+G+L++LG RESC    
Sbjct: 121 VPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTEIGTLISLGMRESCEFFH 180

Query: 181 --------------------------------VQNKLTNVDESIYIPITKAEYTVLVEAF 237
                                           VQNKL NVDE++YIPIT+ E+TVL  AF
Sbjct: 181 DPFKGKSDEGKVRKVLKVEPLPDGSGHFFNLGVQNKLLNVDENVYIPITRGEFTVLKSAF 240

[Close]

BLAST of Cp4.1LG11g07290 vs. NCBI nr
Match: gi|590700630|ref|XP_007046213.1| (SsDNA-binding transcriptional regulator isoform 1 [Theobroma cacao])

HSP 1 Score: 253.4 bits (646), Expect = 3.8e-64
Identity = 148/279 (53.05%), Postives = 178/279 (63.80%), Query Frame = 1


Query: 1   MLRLQCLSSSLLPPLIPELSPETSSNRRLCRLNSFRPLLT-------LSTTPKSSPKCQY 60
           ML+LQ LSS   PPL  +     S+   L   +S +   T       LS TPK S     
Sbjct: 1   MLQLQFLSS---PPLSAQSLNPNSNTNLLSSFSSLKSTQTHAFKLNPLSLTPKPS----- 60

Query: 61  SWNTQQHQAAFESGSQTDSFSSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTP 120
            ++ +  Q+ +    Q  S SS T +  A+ LPPRF+VGHS+YKGKAALTVEPR PEF P
Sbjct: 61  KFSLKCRQSEYFDQQQRFSNSSSTASPPASGLPPRFYVGHSVYKGKAALTVEPRAPEFVP 120

Query: 121 LDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESC------ 180
           LDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTE+G+L++LG RESC      
Sbjct: 121 LDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTEIGALISLGARESCEFFHDP 180

Query: 181 ------------------------------VQNKLTNVDESIYIPITKAEYTVLVEAFKF 237
                                         VQN+L N+DE+IYIPIT+AE+TVL  AF F
Sbjct: 181 FKGKSEEGKVRKVLKVEPLPDGSGHFFNLGVQNRLLNLDENIYIPITRAEFTVLNSAFSF 240

[Close]

BLAST of Cp4.1LG11g07290 vs. NCBI nr
Match: gi|823261097|ref|XP_012463276.1| (PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic-like isoform X2 [Gossypium raimondii])

HSP 1 Score: 253.4 bits (646), Expect = 3.8e-64
Identity = 154/281 (54.80%), Postives = 173/281 (61.57%), Query Frame = 1


Query: 1   MLRLQCLSSSLLPPLI--------PELSPETSS-NRRLCRLNSFRPLLTLSTTPKSSPKC 60
           ML+LQ LSS  L P          P+L P  SS N    R   F PL   S   K S KC
Sbjct: 1   MLQLQLLSSPPLTPQTLNLNSISNPKLFPSFSSLNSSQTRSFKFNPL---SKPSKFSLKC 60

Query: 61  QYSWNTQQHQAAFESGSQTDSFSSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEF 120
           + S    Q Q   +S S T   S          LP RF+VGHSIYKGKAALTVEPR PEF
Sbjct: 61  RQSEYFDQKQRFNDSSSSTSPSS--------LGLPARFYVGHSIYKGKAALTVEPRAPEF 120

Query: 121 TPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESC---- 180
            PLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTE+G+L++LG RESC    
Sbjct: 121 VPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTEIGTLISLGMRESCEFFH 180

Query: 181 --------------------------------VQNKLTNVDESIYIPITKAEYTVLVEAF 237
                                           VQNKL NVDE++YIPIT+ E+TVL  AF
Sbjct: 181 DPFKGKSDEGKVRKVLKVEPLPDGSGHFFNLGVQNKLLNVDENVYIPITRGEFTVLKSAF 240

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g07290 vs. Swiss-Prot


Match Name	E-value	Identity	Description
WHY3_ARATH	1.1e-60	58.57	Single-stranded DNA-binding protein WHY3, chloroplastic OS=Arabidopsis thaliana ...	[more]
WHY1_ARATH	9.6e-60	56.67	Single-stranded DNA-binding protein WHY1, chloroplastic OS=Arabidopsis thaliana ...	[more]
WHY1_SOLTU	9.3e-39	43.98	Single-stranded DNA-binding protein WHY1, chloroplastic OS=Solanum tuberosum GN=...	[more]
WHY1_MAIZE	2.0e-28	70.00	Single-stranded DNA-binding protein WHY1, chloroplastic OS=Zea mays GN=WHY1 PE=2...	[more]
WHY2_SOLTU	1.5e-25	38.99	Single-stranded DNA-bindig protein WHY2, mitochondrial OS=Solanum tuberosum GN=W...	[more]

BLAST of Cp4.1LG11g07290 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KG25_CUCSA	3.9e-100	72.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G404240 PE=4 SV=1	[more]
A0A0D2SAD5_GOSRA	5.3e-65	55.16	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G077400 PE=4 SV=1	[more]
A0A061EAM1_THECC	2.6e-64	53.05	SsDNA-binding transcriptional regulator isoform 1 OS=Theobroma cacao GN=TCM_0117...	[more]
A0A0D2VAT0_GOSRA	2.6e-64	54.80	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G077400 PE=4 SV=1	[more]
A0A0D2SAD9_GOSRA	3.4e-64	54.64	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G077400 PE=4 SV=1	[more]

BLAST of Cp4.1LG11g07290 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G02740.1	6.4e-62	58.57	ssDNA-binding transcriptional regulator	[more]
AT1G14410.1	5.4e-61	56.67	ssDNA-binding transcriptional regulator	[more]
AT1G71260.1	7.1e-21	39.58	WHIRLY 2	[more]

BLAST of Cp4.1LG11g07290 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659113233\|ref\|XP_008456468.1\|	1.1e-103	74.36	PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic-like [Cucumis...	[more]
gi\|778715953\|ref\|XP_011657483.1\|	5.6e-100	72.10	PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic-like [Cucumis...	[more]
gi\|823261095\|ref\|XP_012463275.1\|	7.6e-65	55.16	PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic-like isoform ...	[more]
gi\|590700630\|ref\|XP_007046213.1\|	3.8e-64	53.05	SsDNA-binding transcriptional regulator isoform 1 [Theobroma cacao]	[more]
gi\|823261097\|ref\|XP_012463276.1\|	3.8e-64	54.80	PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic-like isoform ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR013742	Whirly
IPR009044	ssDNA-bd_transcriptional_reg

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0032211	negative regulation of telomere maintenance via telomerase
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0006952	defense response
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009508	plastid chromosome
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0042162	telomeric DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g07290.1	Cp4.1LG11g07290.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009044	ssDNA-binding transcriptional regulator	GENE3D	G3DSA:2.30.31.10		coord: 85..167 score: 3.8E-36coord: 168..218 score: 7.5
IPR009044	ssDNA-binding transcriptional regulator	unknown	SSF54447	ssDNA-binding transcriptional regulator domain	coord: 87..236 score: 7.53
IPR013742	Plant transcription factor	PFAM	PF08536	Whirly	coord: 95..168 score: 4.0
None	No IPR available	PANTHER	PTHR31745	FAMILY NOT NAMED	coord: 1..236 score: 2.0
None	No IPR available	PANTHER	PTHR31745:SF2	SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC-RELATED	coord: 1..236 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG11g07290	Cucsa.005520	Cucumber (Gy14) v1	cgycpeB0088
Cp4.1LG11g07290	CmaCh12G007150	Cucurbita maxima (Rimu)	cmacpeB181
Cp4.1LG11g07290	CmaCh05G009320	Cucurbita maxima (Rimu)	cmacpeB767
Cp4.1LG11g07290	CmoCh12G006480	Cucurbita moschata (Rifu)	cmocpeB155
Cp4.1LG11g07290	CmoCh05G009520	Cucurbita moschata (Rifu)	cmocpeB721
Cp4.1LG11g07290	Cla021884	Watermelon (97103) v1	cpewmB100
Cp4.1LG11g07290	Csa6G404240	Cucumber (Chinese Long) v2	cpecuB121
Cp4.1LG11g07290	MELO3C019785	Melon (DHL92) v3.5.1	cpemeB090
Cp4.1LG11g07290	CSPI06G21250	Wild cucumber (PI 183967)	cpecpiB119
Cp4.1LG11g07290	Lsi08G007360	Bottle gourd (USVL1VR-Ls)	cpelsiB099
Cp4.1LG11g07290	MELO3C019785.2	Melon (DHL92) v3.6.1	cpemedB113
Cp4.1LG11g07290	CsaV3_6G036290	Cucumber (Chinese Long) v3	cpecucB0135
Cp4.1LG11g07290	CsGy6G020490	Cucumber (Gy14) v2	cgybcpeB717
Cp4.1LG11g07290	Carg17617	Silver-seed gourd	carcpeB0191

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG11g07290	Cp4.1LG07g05590	Cucurbita pepo (Zucchini)	cpecpeB149

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG11g07290	Watermelon (Charleston Gray)	cpewcgB123