Carg17617 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17617
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Single-stranded DNA-binding protein
Location	Cucurbita_argyrosperma_scaffold_119 : 274439 .. 277515 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGCGTCTTCAATGGCTGTCTTCTTCCTTGCTTCCGCCATTAAATCCCCCCGAGCTCTGCGCACAACCCTGTAAGAACCCCAGACGATGTGGTTTCAACTCCTCTCGCCAACTCTTCACTCTCACCGCTACACGAAAACCTTCTCCAAAATGCCAGTACGCGTCCTGGAACACGCAGCAGCCTGCCTTCGAACCAGCCTCTCAGACCGATTCATTTTCGCCACAAACAAGCGCCGGCGGTACTTGCTTATCTGTTTTCTTTCTCTTTTTTTTTTTTTTTTGGAAGAACTTCGTATATCCTGTCGGTCATGGTGGCGGTGGAGAGGTGGATTTGATGCTATTAGGAAATTTGGTTTATGTTGGAACCAAAATGAAGTATATAGATCCGTTTGTGACATTGACGACATGCACGGTCGAATTATTATGACCTTGTTCGGTGTTTGTTTCTCTTCTCTCCCTCAAAGCTGGGATTATTTAGACATGGTTCAATTTCGAAGGGTTTCTCCCAATCCGAGGGGCTTTTTGAAGTTCCTTGTGTATTCTGTAATAGTTGTTTTTGATTTCTCGGGTTCTGAAGTATTATGGTTTGGCTTGTTTGTAGCTGCCGCGGCTTTGCCACCAAGGTTTTTTGTCGGTCATTCGATATACAAAGGAAAGGCTGCCCTGTCCATCGAGCCTAGGCCACCAGAGTTTACACCTATAGATGTATGTTTGACATGGATTCTATATTCATCACAAGAATATGTTCTTGCACTTAGTCATAGTACATTACAGGTCATTTTCTTTGTTTTTTTAGCATTGTAAGGTTATTAATCTCTTCCAAATTTTTCAGTCGGGGGCGTTCAAAGTATCCAGGCAAGGATTTGTAATGCTTCAGCTTGCCCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTGTTCATTAAAACAGGCTGATATTTAACTCCTAAAGTTATTGAAGTTTCTGACTTAATGAGCTAAACTGAAATTCTAGCTTATGCTGATTACTATTCCACAGGCTTCATATTTGCCATCATAGATATGTGAAAATGTAGTATCATTTCCATTACTATGATGGAGTAGATGATATTGAAAATACTACAATCATTTTTCTGTTTACTAAAATCAAACTATTTTGATGAACTATAATTAGATGATGTCTTGAAAAGGTTAAAGTCATTGTGGATTTGAAATCACAATCTTCCTACTGTGAGAATGAGCTAAATTAGATTATACTTTCTTTTGTATATAGGTATTTTCATTATCACTGACAGAATTGGGAAGTTTAGTCGCCCTTGGCCCACGGGAGTCTTGCGAATTTTTCCATGATCCCTACAAGGGAAAAAGGTACTATCTGTTTACAATCTCAATCAAAATCTATACCATTAGTTTCTTCTGTTGTGCCATGCTCATGTTTATGTGTATTCCTTGGTTACCCCAAACATTTATACAGTCTGCCCAAGCGTGTTTTCTTAGTTCTTAGAATTGTATGATTGCATCACATTGAACATTGAAATTTGAAAACAATGATGTCTTGATCCCTGTAGGCTTTAGTAACCAAATACCACCTCCTCTCGCGGGTACATGCCGGCCGTTTCTCTTTACTAGCCAAACAAAATGTTTTTTACGTCATAAGTTATTTGTAAGGAAAGATTTGCAGGTTTGAAAACACACTATTTTATGATAACAAGAAATGGCAAAATATTTGTTCTACAGTGATGAAGGGAAGGTCAGAAAGATACTAAAAGTCGAGCCTCTTCCAGATGGTTCTGGACATTTCTTCAATCTCAGTAAGTCTTGAATTGAAACCTCTATGATGCATTTGAGTTGAATATAAAGCTGAATTTGGCTACATCTCCATGTCCAACACGTGTCAGATACTTAGCCACCACAAATAGAATGCTAGCATAATAGAGATATGCATTAGACCCTAGTTGGACAAAGCAACCAATATTTCTTTGAGTGGAATGATGCTTGAGAAAGTGTTTCATTTTTTCCTTACCTTTTCTGTTCTATTTTGTTGCACAAGGCGTTCAGAACAAGCTAATCAACGTAGATGAGAGCATTTATATTCCCATCACCAAAGCCGAGTATACTGTACTTGTTGAGGCTTTCAAGGTAAAGTTCTTTCTTGTTTACTTTCTTTTCATGATTGTTTGATTCATTCAGTATCAGTGATTGAGATTAAAGGAGAGAAAAGCTGTGTGTATGATTTGGATCAGGACAGTGGAAACTGCAAAAATTGAGAAAAAAGAACCTACTTAACTCACCAAAACTGAATTGGTCCGGTTGGTTTCAAGAACTCTTATTTGCTTGTTCAGTTTCATTAAGTTAAGAACTGAAGATTAGACAATTAATTTGGGATCGGTCACTTTTTGTAACGGCCCAAGCCCATCGCTAGCCAGATATTATCCTCTTTGTGCTTTTCCTTTTTGGGTTCCCATCAAAGTTTTTAAAACGCTTCTGCTAGGTAGATGTTTCACACTTTTATAAAGAATGTTTCATTCTCCTCCCCAATCGATATGGGATCCAAGCTGAACTGACGAACTCTTGTACTCTTACTTGTGATGACCCTTTTGTTTTCTCCAAATTATATTCCCAAACTGAACTGACGAACTCTTGTACTCTTACTTGTGATAACCCTTTCGTTTTCTCCAAATTATATTCCTTTCGTTTTCTCCAAATTATGTGAATATAATTGATGAATTGGATGTTTAAGGTTGGGTTTGTGATAGGGTTGAATTCACTGATTTGCAGTTTATCTTGCCGCACCTCATGGGATGGCATACCATTGCGAACACCACGATGAGGCCTGAAGATAGCAGCCGAGTAAATAACGCGAATCCCAGATATGGTGGTGAGTCGGGTGGCTTCGAATGGAGTAGATAGTTTCTACTTTTCCTTAGGCTGAAGATGATGATTGTAGTTTATTTCAGTTATCCTGATCTTTCACTAGTTATGATAGTTTAGTCGCTTTTTTTTTTTTTTTTTTATCTATGGGTCTACATTTTCCTAATATATCTCTAAACCCAAATATTTTAATATTATATATGTTTTTTTGTATA

mRNA sequence

ATGCTGCGTCTTCAATGGCTGTCTTCTTCCTTGCTTCCGCCATTAAATCCCCCCGAGCTCTGCGCACAACCCTGTAAGAACCCCAGACGATGTGGTTTCAACTCCTCTCGCCAACTCTTCACTCTCACCGCTACACGAAAACCTTCTCCAAAATGCCAGTACGCGTCCTGGAACACGCAGCAGCCTGCCTTCGAACCAGCCTCTCAGACCGATTCATTTTCGCCACAAACAAGCGCCGGCGCTGCCGCGGCTTTGCCACCAAGGTTTTTTGTCGGTCATTCGATATACAAAGGAAAGGCTGCCCTGTCCATCGAGCCTAGGCCACCAGAGTTTACACCTATAGATTCGGGGGCGTTCAAAGTATCCAGGCAAGGATTTGTAATGCTTCAGCTTGCCCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTTTCATTATCACTGACAGAATTGGGAAGTTTAGTCGCCCTTGGCCCACGGGAGTCTTGCGAATTTTTCCATGATCCCTACAAGGGAAAAAGTGATGAAGGGAAGGTCAGAAAGATACTAAAAGTCGAGCCTCTTCCAGATGGTTCTGGACATTTCTTCAATCTCAGCGTTCAGAACAAGCTAATCAACGTAGATGAGAGCATTTATATTCCCATCACCAAAGCCGAGTATACTGTACTTGTTGAGGCTTTCAAGTTTATCTTGCCGCACCTCATGGGATGGCATACCATTGCGAACACCACGATGAGGCCTGAAGATAGCAGCCGAGTAAATAACGCGAATCCCAGATATGGTGGTGAGTCGGGTGGCTTCGAATGGAGTAGATAGTTTCTACTTTTCCTTAGGCTGAAGATGATGATTGTAGTTTATTTCAGTTATCCTGATCTTTCACTAGTTATGATAGTTTAGTCGCTTTTTTTTTTTTTTTTTTATCTATGGGTCTACATTTTCCTAATATATCTCTAAACCCAAATATTTTAATATTATATATGTTTTTTTGTATA

Coding sequence (CDS)

ATGCTGCGTCTTCAATGGCTGTCTTCTTCCTTGCTTCCGCCATTAAATCCCCCCGAGCTCTGCGCACAACCCTGTAAGAACCCCAGACGATGTGGTTTCAACTCCTCTCGCCAACTCTTCACTCTCACCGCTACACGAAAACCTTCTCCAAAATGCCAGTACGCGTCCTGGAACACGCAGCAGCCTGCCTTCGAACCAGCCTCTCAGACCGATTCATTTTCGCCACAAACAAGCGCCGGCGCTGCCGCGGCTTTGCCACCAAGGTTTTTTGTCGGTCATTCGATATACAAAGGAAAGGCTGCCCTGTCCATCGAGCCTAGGCCACCAGAGTTTACACCTATAGATTCGGGGGCGTTCAAAGTATCCAGGCAAGGATTTGTAATGCTTCAGCTTGCCCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTTTCATTATCACTGACAGAATTGGGAAGTTTAGTCGCCCTTGGCCCACGGGAGTCTTGCGAATTTTTCCATGATCCCTACAAGGGAAAAAGTGATGAAGGGAAGGTCAGAAAGATACTAAAAGTCGAGCCTCTTCCAGATGGTTCTGGACATTTCTTCAATCTCAGCGTTCAGAACAAGCTAATCAACGTAGATGAGAGCATTTATATTCCCATCACCAAAGCCGAGTATACTGTACTTGTTGAGGCTTTCAAGTTTATCTTGCCGCACCTCATGGGATGGCATACCATTGCGAACACCACGATGAGGCCTGAAGATAGCAGCCGAGTAAATAACGCGAATCCCAGATATGGTGGTGAGTCGGGTGGCTTCGAATGGAGTAGATAG

Protein sequence

MLRLQWLSSSLLPPLNPPELCAQPCKNPRRCGFNSSRQLFTLTATRKPSPKCQYASWNTQQPAFEPASQTDSFSPQTSAGAAAALPPRFFVGHSIYKGKAALSIEPRPPEFTPIDSGAFKVSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMGWHTIANTTMRPEDSSRVNNANPRYGGESGGFEWSR

Homology

[Close]

BLAST of Carg17617 vs. NCBI nr
Match: XP_022951594.1 (single-stranded DNA-binding protein WHY1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 566.6 bits (1459), Expect = 4.6e-158
Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 0


Query: 1   MLRLQWLSSSLLPPLNPPELCAQPCKNPRRCGFNSSRQLFTLTATRKPSPKCQYASWNTQ 60
           MLRLQWLSSSLLPPLNPPELCAQPCKNPRRCGFNSSRQLFTLTATRKPSPKCQYASWNTQ
Sbjct: 1   MLRLQWLSSSLLPPLNPPELCAQPCKNPRRCGFNSSRQLFTLTATRKPSPKCQYASWNTQ 60

Query: 61  QPAFEPASQTDSFSPQTSAGAAAALPPRFFVGHSIYKGKAALSIEPRPPEFTPIDSGAFK 120
           QPAFEPASQTDSFSPQTSAGAAAALPPRFFVGHSIYKGKAALSIEPRPPEFTPIDSGAFK
Sbjct: 61  QPAFEPASQTDSFSPQTSAGAAAALPPRFFVGHSIYKGKAALSIEPRPPEFTPIDSGAFK 120

Query: 121 VSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRESCEFFHDPYKGKSDE 180
           VSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRESCEFFHDPYKGKSDE
Sbjct: 121 VSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRESCEFFHDPYKGKSDE 180

Query: 181 GKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMG 240
           GKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMG
Sbjct: 181 GKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMG 240

Query: 241 WHTIANTTMRPEDSSRVNNANPRYGGESGGFEWSR 276
           WHTIANTTMRPEDSSRVNNANPRYGGESGGFEWSR
Sbjct: 241 WHTIANTTMRPEDSSRVNNANPRYGGESGGFEWSR 275

[Close]

BLAST of Carg17617 vs. NCBI nr
Match: XP_023537082.1 (single-stranded DNA-binding protein WHY1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 552.4 bits (1422), Expect = 8.9e-154
Identity = 269/275 (97.82%), Postives = 270/275 (98.18%), Query Frame = 0


Query: 1   MLRLQWLSSSLLPPLNPPELCAQPCKNPRRCGFNSSRQLFTLTATRKPSPKCQYASWNTQ 60
           MLRLQWLSSSLLPPLNPPELCAQPC N RRC FNSSRQLFTLTATRKPSPKCQYASWNTQ
Sbjct: 1   MLRLQWLSSSLLPPLNPPELCAQPCSNRRRCRFNSSRQLFTLTATRKPSPKCQYASWNTQ 60

Query: 61  QPAFEPASQTDSFSPQTSAGAAAALPPRFFVGHSIYKGKAALSIEPRPPEFTPIDSGAFK 120
           QPAFEPASQTDSFSPQTSAGAAAALPPRFFVGHSIYKGKAALSIEPRPPEFTPIDSGAFK
Sbjct: 61  QPAFEPASQTDSFSPQTSAGAAAALPPRFFVGHSIYKGKAALSIEPRPPEFTPIDSGAFK 120

Query: 121 VSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRESCEFFHDPYKGKSDE 180
           VSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLV+LGPRESCEFFHDPYKGKSDE
Sbjct: 121 VSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVSLGPRESCEFFHDPYKGKSDE 180

Query: 181 GKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMG 240
           GKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMG
Sbjct: 181 GKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMG 240

Query: 241 WHTIANTTMRPEDSSRVNNANPRYGGESGGFEWSR 276
           WHTIANT  RPEDSSRVNNANPRYGGESGGFEWSR
Sbjct: 241 WHTIANTMTRPEDSSRVNNANPRYGGESGGFEWSR 275

[Close]

BLAST of Carg17617 vs. NCBI nr
Match: XP_023002109.1 (single-stranded DNA-binding protein WHY1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 548.5 bits (1412), Expect = 1.3e-152
Identity = 269/275 (97.82%), Postives = 270/275 (98.18%), Query Frame = 0


Query: 1   MLRLQWLSSSLLPPLNPPELCAQPCKNPRRCGFNSSRQLFTLTATRKPSPKCQYASWNTQ 60
           MLRLQWLSSSLLPPLN PELCAQPCKNPRRC FNSSRQLFTLTATRKPSPKCQYASWNTQ
Sbjct: 1   MLRLQWLSSSLLPPLN-PELCAQPCKNPRRCRFNSSRQLFTLTATRKPSPKCQYASWNTQ 60

Query: 61  QPAFEPASQTDSFSPQTSAGAAAALPPRFFVGHSIYKGKAALSIEPRPPEFTPIDSGAFK 120
           QPAFEPASQTDS+SPQT AGAAAALPPRFFVGHSIYKGKAALSIEPRPPEFTPIDSGAFK
Sbjct: 61  QPAFEPASQTDSYSPQTRAGAAAALPPRFFVGHSIYKGKAALSIEPRPPEFTPIDSGAFK 120

Query: 121 VSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRESCEFFHDPYKGKSDE 180
           VSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRESCEFFHDPYKGKSDE
Sbjct: 121 VSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRESCEFFHDPYKGKSDE 180

Query: 181 GKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMG 240
           GKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMG
Sbjct: 181 GKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMG 240

Query: 241 WHTIANTTMRPEDSSRVNNANPRYGGESGGFEWSR 276
           WHTIANT MRPEDSSRVNNANPRYGGESG FEWSR
Sbjct: 241 WHTIANTMMRPEDSSRVNNANPRYGGESGDFEWSR 274

[Close]

BLAST of Carg17617 vs. NCBI nr
Match: XP_008456468.1 (PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 468.0 bits (1203), Expect = 2.2e-128
Identity = 233/278 (83.81%), Postives = 247/278 (88.85%), Query Frame = 0


Query: 1   MLRLQWLSSSLLPPLNPPELCAQPCKNPRRCGFNSSRQLFTLTATRKPSPKCQYASWNT- 60
           MLRLQWLSSSLLP  N PEL  +   NPR C  N  R L TLT TRKPSPKCQY SWNT 
Sbjct: 1   MLRLQWLSSSLLPTFN-PELSPETLSNPRLCSLNFRRPLLTLTTTRKPSPKCQY-SWNTH 60

Query: 61  --QQPAFEPASQTDSFSPQTSAGAAAALPPRFFVGHSIYKGKAALSIEPRPPEFTPIDSG 120
             QQ +FEPASQTDSFSPQ+ AGAAAALPPRFFVGHSIYKGKAAL++EPRPPEFTP+DSG
Sbjct: 61  QHQQSSFEPASQTDSFSPQSRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSG 120

Query: 121 AFKVSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRESCEFFHDPYKGK 180
           AFK+SR+G VMLQ APAAGVRQYDWSRKQVFSLS+TELGSL+ALGPRE+CEFFHDPYKGK
Sbjct: 121 AFKISREGLVMLQFAPAAGVRQYDWSRKQVFSLSVTELGSLIALGPREACEFFHDPYKGK 180

Query: 181 SDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPH 240
           SDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPH
Sbjct: 181 SDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPH 240

Query: 241 LMGWHTIANTTMRPEDSSRVNNANPRYGGESGGFEWSR 276
           LMGWHTIANT  +PEDSSR N ANPRYGG+   FEW+R
Sbjct: 241 LMGWHTIANTMTKPEDSSRGNTANPRYGGD---FEWNR 273

[Close]

BLAST of Carg17617 vs. NCBI nr
Match: XP_022151332.1 (single-stranded DNA-binding protein WHY1, chloroplastic-like [Momordica charantia])

HSP 1 Score: 450.3 bits (1157), Expect = 4.8e-123
Identity = 227/281 (80.78%), Postives = 242/281 (86.12%), Query Frame = 0


Query: 1   MLRLQWLSSSLLPPLNPPELCAQP---CKNPRRCGFNSSRQLFTLTATRKPSPKCQYASW 60
           MLRLQWLSSSLLPPL  PEL  +    C N R C  NSSR L TLTATRKPSPKCQY SW
Sbjct: 1   MLRLQWLSSSLLPPLLNPELSPETSHLCPNRRLCTLNSSRPLLTLTATRKPSPKCQY-SW 60

Query: 61  NTQQPAF---EPASQTDSFSPQTSAGAAAALPPRFFVGHSIYKGKAALSIEPRPPEFTPI 120
           +TQ       EP SQ  SFSPQT AGAA ALPPRFFVGHSIYKGKA L++EPRPPEFTP+
Sbjct: 61  STQXXXXXPSEPGSQAHSFSPQTRAGAAGALPPRFFVGHSIYKGKAVLTVEPRPPEFTPL 120

Query: 121 DSGAFKVSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRESCEFFHDPY 180
           DSGAFK+SR+GFV+LQ APAAGVRQYDWSRKQVFSLS+TELGSL+ALG R+SCEFFHDPY
Sbjct: 121 DSGAFKLSREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLIALGLRDSCEFFHDPY 180

Query: 181 KGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFI 240
           KGKS+EGKVRKILKVEPLPDGSGHFFNLSVQNKLIN+DESIYIPITKAEYTVLVEAFKFI
Sbjct: 181 KGKSEEGKVRKILKVEPLPDGSGHFFNLSVQNKLINMDESIYIPITKAEYTVLVEAFKFI 240

Query: 241 LPHLMGWHTIANTTMRPEDSSRVNNANPRYGGESGGFEWSR 276
           LPHLMGWH I+NT  R EDS RVNNANPRYGG+   FEWSR
Sbjct: 241 LPHLMGWHMISNTMTRAEDSGRVNNANPRYGGD---FEWSR 277

[Close]

BLAST of Carg17617 vs. TAIR10
Match: AT1G14410.1 (ssDNA-binding transcriptional regulator)

HSP 1 Score: 318.9 bits (816), Expect = 3.0e-87
Identity = 158/244 (64.75%), Postives = 191/244 (78.28%), Query Frame = 0


Query: 32  GFNSSRQLFTLTATRKPSPKCQYASWNTQQPAFEPASQTDSFSPQTSAGAAAALPPRFFV 91
           GF   R  F L  T K        S  T    FE     DS S   S   A  LP RF+V
Sbjct: 29  GFAVKRHGFALKPTTKTVKLFSVKSRQTDY--FEKQRFGDSSS---SPSPAEGLPARFYV 88

Query: 92  GHSIYKGKAALSIEPRPPEFTPIDSGAFKVSRQGFVMLQLAPAAGVRQYDWSRKQVFSLS 151
           GHSIYKGKAAL+++PR PEF  +DSGAFK+S+ GF++LQ AP+AGVRQYDWS+KQVFSLS
Sbjct: 89  GHSIYKGKAALTVDPRAPEFVALDSGAFKLSKDGFLLLQFAPSAGVRQYDWSKKQVFSLS 148

Query: 152 LTELGSLVALGPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINV 211
           +TE+G+LV+LGPRESCEFFHDP+KGKSDEGKVRK+LKVEPLPDGSGHFFNLSVQNKL+NV
Sbjct: 149 VTEIGTLVSLGPRESCEFFHDPFKGKSDEGKVRKVLKVEPLPDGSGHFFNLSVQNKLVNV 208

Query: 212 DESIYIPITKAEYTVLVEAFKFILPHLMGWHTIANTTMRPEDSSRVNNANPRYGGESGGF 271
           DESIYIPIT+AE+ VL+ AF F+LP+L+GWH  AN +++PE++SRVNNA+P YGG+   +
Sbjct: 209 DESIYIPITRAEFAVLISAFNFVLPYLIGWHAFAN-SIKPEETSRVNNASPNYGGD---Y 263

Query: 272 EWSR 276
           EW+R
Sbjct: 269 EWNR 263

[Close]

BLAST of Carg17617 vs. TAIR10
Match: AT2G02740.1 (ssDNA-binding transcriptional regulator)

HSP 1 Score: 312.8 bits (800), Expect = 2.1e-85
Identity = 153/230 (66.52%), Postives = 188/230 (81.74%), Query Frame = 0


Query: 47  KPSPKCQYASWNTQQPAFEPASQTDSFSPQTSAGAAAALPPRFFVGHSIYKGKAALSIEP 106
           KP+ + +    + Q   FE     DS S Q     A    PRF+VGHSIYKGKAAL+IEP
Sbjct: 47  KPTARLKLTVKSRQSDYFEKQRFGDSSSSQN----AEVSSPRFYVGHSIYKGKAALTIEP 106

Query: 107 RPPEFTPIDSGAFKVSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRES 166
           R PEF  ++SGAFK++++GF++LQ APAAGVRQYDWSRKQVFSLS+TE+G+LV+LGPRES
Sbjct: 107 RAPEFVALESGAFKLTKEGFLLLQFAPAAGVRQYDWSRKQVFSLSVTEIGNLVSLGPRES 166

Query: 167 CEFFHDPYKGK-SDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYT 226
           CEFFHDP+KGK SDEGKVRK+LKVEPLPDGSG FFNLSVQNKL+NVDES+YIPITKAE+ 
Sbjct: 167 CEFFHDPFKGKGSDEGKVRKVLKVEPLPDGSGRFFNLSVQNKLLNVDESVYIPITKAEFA 226

Query: 227 VLVEAFKFILPHLMGWHTIANTTMRPEDSSRVNNANPRYGGESGGFEWSR 276
           VL+ AF F+LPHL+GW   AN +++PEDS+R+NNA+P+YGG+   +EWSR
Sbjct: 227 VLISAFNFVLPHLIGWSAFAN-SIKPEDSNRLNNASPKYGGD---YEWSR 268

[Close]

BLAST of Carg17617 vs. TAIR10
Match: AT1G71260.1 (WHIRLY 2)

HSP 1 Score: 181.0 bits (458), Expect = 9.8e-46
Identity = 88/180 (48.89%), Postives = 125/180 (69.44%), Query Frame = 0


Query: 67  ASQTDSFSP-QTSAGAAAALPP-RFFVGHSIYKGKAALSIEPRPPEFTPIDSGAFKVSRQ 126
           AS ++S +P +   G  AA P  R F  +SI+KGKAALS+EP  P FT IDSG  ++ R+
Sbjct: 30  ASWSNSSTPGRGFPGKDAAKPSGRLFAPYSIFKGKAALSVEPVLPSFTEIDSGNLRIDRR 89

Query: 127 GFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRESCEFFHDPYKGKSDEGKVR 186
           G +M+   PA G R+YDW +KQ F+LS TE+GSL+++G ++S EFFHDP    S+ G+VR
Sbjct: 90  GSLMMTFMPAIGERKYDWEKKQKFALSPTEVGSLISMGSKDSSEFFHDPSMKSSNAGQVR 149

Query: 187 KILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMGWHTI 245
           K L V+P  DGSG+F +LSV N ++  ++   +P+TKAE+ V+  AF F LPH+MGW+ +
Sbjct: 150 KSLSVKPHADGSGYFISLSVNNSILKTNDYFVVPVTKAEFAVMKTAFSFALPHIMGWNRL 209

[Close]

BLAST of Carg17617 vs. Swiss-Prot
Match: sp|Q9M9S3|WHY1_ARATH (Single-stranded DNA-binding protein WHY1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=WHY1 PE=1 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 5.4e-86
Identity = 158/244 (64.75%), Postives = 191/244 (78.28%), Query Frame = 0


Query: 32  GFNSSRQLFTLTATRKPSPKCQYASWNTQQPAFEPASQTDSFSPQTSAGAAAALPPRFFV 91
           GF   R  F L  T K        S  T    FE     DS S   S   A  LP RF+V
Sbjct: 29  GFAVKRHGFALKPTTKTVKLFSVKSRQTDY--FEKQRFGDSSS---SPSPAEGLPARFYV 88

Query: 92  GHSIYKGKAALSIEPRPPEFTPIDSGAFKVSRQGFVMLQLAPAAGVRQYDWSRKQVFSLS 151
           GHSIYKGKAAL+++PR PEF  +DSGAFK+S+ GF++LQ AP+AGVRQYDWS+KQVFSLS
Sbjct: 89  GHSIYKGKAALTVDPRAPEFVALDSGAFKLSKDGFLLLQFAPSAGVRQYDWSKKQVFSLS 148

Query: 152 LTELGSLVALGPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINV 211
           +TE+G+LV+LGPRESCEFFHDP+KGKSDEGKVRK+LKVEPLPDGSGHFFNLSVQNKL+NV
Sbjct: 149 VTEIGTLVSLGPRESCEFFHDPFKGKSDEGKVRKVLKVEPLPDGSGHFFNLSVQNKLVNV 208

Query: 212 DESIYIPITKAEYTVLVEAFKFILPHLMGWHTIANTTMRPEDSSRVNNANPRYGGESGGF 271
           DESIYIPIT+AE+ VL+ AF F+LP+L+GWH  AN +++PE++SRVNNA+P YGG+   +
Sbjct: 209 DESIYIPITRAEFAVLISAFNFVLPYLIGWHAFAN-SIKPEETSRVNNASPNYGGD---Y 263

Query: 272 EWSR 276
           EW+R
Sbjct: 269 EWNR 263

[Close]

BLAST of Carg17617 vs. Swiss-Prot
Match: sp|Q66GR6|WHY3_ARATH (Single-stranded DNA-binding protein WHY3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=WHY3 PE=1 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 3.9e-84
Identity = 153/230 (66.52%), Postives = 188/230 (81.74%), Query Frame = 0


Query: 47  KPSPKCQYASWNTQQPAFEPASQTDSFSPQTSAGAAAALPPRFFVGHSIYKGKAALSIEP 106
           KP+ + +    + Q   FE     DS S Q     A    PRF+VGHSIYKGKAAL+IEP
Sbjct: 47  KPTARLKLTVKSRQSDYFEKQRFGDSSSSQN----AEVSSPRFYVGHSIYKGKAALTIEP 106

Query: 107 RPPEFTPIDSGAFKVSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRES 166
           R PEF  ++SGAFK++++GF++LQ APAAGVRQYDWSRKQVFSLS+TE+G+LV+LGPRES
Sbjct: 107 RAPEFVALESGAFKLTKEGFLLLQFAPAAGVRQYDWSRKQVFSLSVTEIGNLVSLGPRES 166

Query: 167 CEFFHDPYKGK-SDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYT 226
           CEFFHDP+KGK SDEGKVRK+LKVEPLPDGSG FFNLSVQNKL+NVDES+YIPITKAE+ 
Sbjct: 167 CEFFHDPFKGKGSDEGKVRKVLKVEPLPDGSGRFFNLSVQNKLLNVDESVYIPITKAEFA 226

Query: 227 VLVEAFKFILPHLMGWHTIANTTMRPEDSSRVNNANPRYGGESGGFEWSR 276
           VL+ AF F+LPHL+GW   AN +++PEDS+R+NNA+P+YGG+   +EWSR
Sbjct: 227 VLISAFNFVLPHLIGWSAFAN-SIKPEDSNRLNNASPKYGGD---YEWSR 268

[Close]

BLAST of Carg17617 vs. Swiss-Prot
Match: sp|Q9LL85|WHY1_SOLTU (Single-stranded DNA-binding protein WHY1, chloroplastic OS=Solanum tuberosum OX=4113 GN=WHY1 PE=1 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 6.2e-82
Identity = 140/192 (72.92%), Postives = 170/192 (88.54%), Query Frame = 0


Query: 84  ALPPRFFVGHSIYKGKAALSIEPRPPEFTPIDSGAFKVSRQGFVMLQLAPAAGVRQYDWS 143
           A  P+ FVG+SIYKGKAAL++EPR PEF+P+DSGAFK+SR+G VMLQ APAAGVRQYDWS
Sbjct: 87  ASTPKVFVGYSIYKGKAALTVEPRSPEFSPLDSGAFKLSREGMVMLQFAPAAGVRQYDWS 146

Query: 144 RKQVFSLSLTELGSLVALGPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLS 203
           RKQVFSLS+TE+GS+++LG ++SCEFFHDP KG+SDEG+VRK+LKVEPLPDGSGHFFNLS
Sbjct: 147 RKQVFSLSVTEIGSIISLGAKDSCEFFHDPNKGRSDEGRVRKVLKVEPLPDGSGHFFNLS 206

Query: 204 VQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMGWHTIANTTMRPEDSSRVNNANPR 263
           VQNKLIN+DE+IYIP+TKAE+ VLV AF F++P+L+GWHT  N + +PED+SR NNANPR
Sbjct: 207 VQNKLINLDENIYIPVTKAEFAVLVSAFNFVMPYLLGWHTAVN-SFKPEDASRSNNANPR 266

Query: 264 YGGESGGFEWSR 276
            G E    EW+R
Sbjct: 267 SGAE---LEWNR 274

[Close]

BLAST of Carg17617 vs. Swiss-Prot
Match: sp|B2LXS7|WHY1_MAIZE (Single-stranded DNA-binding protein WHY1, chloroplastic OS=Zea mays OX=4577 GN=WHY1 PE=2 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 2.5e-67
Identity = 116/188 (61.70%), Postives = 149/188 (79.26%), Query Frame = 0


Query: 88  RFFVGHSIYKGKAALSIEPRPPEFTPIDSGAFKVSRQGFVMLQLAPAAGVRQYDWSRKQV 147
           R F  +SIYKGKAALS +PRPP F P+DSGA+KV+++GFV+LQ APA   RQYDW+RKQV
Sbjct: 85  RVFTSYSIYKGKAALSFDPRPPLFVPLDSGAYKVAKEGFVLLQFAPAVATRQYDWTRKQV 144

Query: 148 FSLSLTELGSLVALGPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNK 207
           FSLS+ E+G+L+ LGP +SCEFFHDP+KG+S+EGKVRK+LK+EP PDG+G FFNLSVQN+
Sbjct: 145 FSLSVWEIGTLLTLGPTDSCEFFHDPFKGRSEEGKVRKVLKIEPTPDGNGRFFNLSVQNR 204

Query: 208 LINVDESIYIPITKAEYTVLVEAFKFILPHLMGWHTIANTTMRPEDSSRVNNANPRYGGE 267
           LINVDESIYIPITK E+ V+V  F +I+PHLMGW T   ++++PE+S   +         
Sbjct: 205 LINVDESIYIPITKGEFAVIVSTFNYIIPHLMGWSTFV-SSIKPEESRPYSRPQ-----S 264

Query: 268 SGGFEWSR 276
           +  +EW R
Sbjct: 265 TSEYEWRR 266

[Close]

BLAST of Carg17617 vs. Swiss-Prot
Match: sp|Q8VYF7|WHY2_ARATH (Single-stranded DNA-binding protein WHY2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=WHY2 PE=1 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.8e-44
Identity = 88/180 (48.89%), Postives = 125/180 (69.44%), Query Frame = 0


Query: 67  ASQTDSFSP-QTSAGAAAALPP-RFFVGHSIYKGKAALSIEPRPPEFTPIDSGAFKVSRQ 126
           AS ++S +P +   G  AA P  R F  +SI+KGKAALS+EP  P FT IDSG  ++ R+
Sbjct: 30  ASWSNSSTPGRGFPGKDAAKPSGRLFAPYSIFKGKAALSVEPVLPSFTEIDSGNLRIDRR 89

Query: 127 GFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRESCEFFHDPYKGKSDEGKVR 186
           G +M+   PA G R+YDW +KQ F+LS TE+GSL+++G ++S EFFHDP    S+ G+VR
Sbjct: 90  GSLMMTFMPAIGERKYDWEKKQKFALSPTEVGSLISMGSKDSSEFFHDPSMKSSNAGQVR 149

Query: 187 KILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMGWHTI 245
           K L V+P  DGSG+F +LSV N ++  ++   +P+TKAE+ V+  AF F LPH+MGW+ +
Sbjct: 150 KSLSVKPHADGSGYFISLSVNNSILKTNDYFVVPVTKAEFAVMKTAFSFALPHIMGWNRL 209

[Close]

BLAST of Carg17617 vs. TrEMBL
Match: tr|A0A1S3C3B0|A0A1S3C3B0_CUCME (single-stranded DNA-binding protein WHY1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103496412 PE=4 SV=1)

HSP 1 Score: 468.0 bits (1203), Expect = 1.5e-128
Identity = 233/278 (83.81%), Postives = 247/278 (88.85%), Query Frame = 0


Query: 1   MLRLQWLSSSLLPPLNPPELCAQPCKNPRRCGFNSSRQLFTLTATRKPSPKCQYASWNT- 60
           MLRLQWLSSSLLP  N PEL  +   NPR C  N  R L TLT TRKPSPKCQY SWNT 
Sbjct: 1   MLRLQWLSSSLLPTFN-PELSPETLSNPRLCSLNFRRPLLTLTTTRKPSPKCQY-SWNTH 60

Query: 61  --QQPAFEPASQTDSFSPQTSAGAAAALPPRFFVGHSIYKGKAALSIEPRPPEFTPIDSG 120
             QQ +FEPASQTDSFSPQ+ AGAAAALPPRFFVGHSIYKGKAAL++EPRPPEFTP+DSG
Sbjct: 61  QHQQSSFEPASQTDSFSPQSRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSG 120

Query: 121 AFKVSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRESCEFFHDPYKGK 180
           AFK+SR+G VMLQ APAAGVRQYDWSRKQVFSLS+TELGSL+ALGPRE+CEFFHDPYKGK
Sbjct: 121 AFKISREGLVMLQFAPAAGVRQYDWSRKQVFSLSVTELGSLIALGPREACEFFHDPYKGK 180

Query: 181 SDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPH 240
           SDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPH
Sbjct: 181 SDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPH 240

Query: 241 LMGWHTIANTTMRPEDSSRVNNANPRYGGESGGFEWSR 276
           LMGWHTIANT  +PEDSSR N ANPRYGG+   FEW+R
Sbjct: 241 LMGWHTIANTMTKPEDSSRGNTANPRYGGD---FEWNR 273

[Close]

BLAST of Carg17617 vs. TrEMBL
Match: tr|A0A0A0KG25|A0A0A0KG25_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G404240 PE=4 SV=1)

HSP 1 Score: 439.5 bits (1129), Expect = 5.6e-120
Identity = 224/281 (79.72%), Postives = 239/281 (85.05%), Query Frame = 0


Query: 1   MLRLQWLSSSLLPPLNPPELCAQPCKNPRRCGFNSSRQLFTLTATRKPSPKCQYASWNT- 60
           MLRLQ LSSS LP  N PEL  +   NPR C  N SR L TLT TRKP+ KCQY SWNT 
Sbjct: 1   MLRLQCLSSSFLPTFN-PELSPETLSNPRLCTLNFSRPLPTLTTTRKPTSKCQY-SWNTQ 60

Query: 61  --QQPAFEPASQTDSFSPQTSAGA---AAALPPRFFVGHSIYKGKAALSIEPRPPEFTPI 120
             QQ AFEPA  TDS SPQ+ AGA      LPPRFFVGHSIYKGKAAL++EPRPPEFTP+
Sbjct: 61  QHQQSAFEPAPHTDSLSPQSRAGAXXXXXXLPPRFFVGHSIYKGKAALTVEPRPPEFTPL 120

Query: 121 DSGAFKVSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRESCEFFHDPY 180
           DSGAFK+SR+G VMLQ APAAGVRQYDWSRKQVFSLS+TELGSL+ALGPRE+CEFFHDPY
Sbjct: 121 DSGAFKISREGLVMLQFAPAAGVRQYDWSRKQVFSLSVTELGSLIALGPREACEFFHDPY 180

Query: 181 KGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFI 240
           KGKSDEGKVRKILKVEPLPDGSGHFFNL+VQNKLINVDESIYIPITKAEYTVLVEAFKFI
Sbjct: 181 KGKSDEGKVRKILKVEPLPDGSGHFFNLTVQNKLINVDESIYIPITKAEYTVLVEAFKFI 240

Query: 241 LPHLMGWHTIANTTMRPEDSSRVNNANPRYGGESGGFEWSR 276
           LPHLMGWHTIANT  +PEDSSR N ANPRYGG+   FEW+R
Sbjct: 241 LPHLMGWHTIANTMTKPEDSSRGNTANPRYGGD---FEWNR 276

[Close]

BLAST of Carg17617 vs. TrEMBL
Match: tr|A0A1U8IFY8|A0A1U8IFY8_GOSHI (single-stranded DNA-binding protein WHY1, chloroplastic-like isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107894079 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 2.7e-90
Identity = 177/283 (62.54%), Postives = 215/283 (75.97%), Query Frame = 0


Query: 1   MLRLQWLSSSLLPPLNPPELCAQPCKNPRR----CGFNSSR-QLFTLTATRKPSP---KC 60
           ML+LQ LSS   PPL P  +      NP+        NSS+ + F      KPS    KC
Sbjct: 1   MLQLQLLSS---PPLTPQTVNLNSISNPKLFPSFSSLNSSQTRSFKFNPLSKPSKFSLKC 60

Query: 61  QYASWNTQQPAFEPASQTDSFSPQTSAGAAAALPPRFFVGHSIYKGKAALSIEPRPPEFT 120
           + + +  Q+  F  +S   S SP + AG    LP RF+VGHSIYKGKAAL++EPR PEF 
Sbjct: 61  RQSEYFDQKQRFNDSS--SSSSPSSLAG----LPGRFYVGHSIYKGKAALTVEPRAPEFV 120

Query: 121 PIDSGAFKVSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRESCEFFHD 180
           P+DSGAFK+SR+GFV+LQ APAAGVRQYDWSRKQVFSLS+TE+G+L++LG RESCEFFHD
Sbjct: 121 PLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTEIGTLISLGMRESCEFFHD 180

Query: 181 PYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFK 240
           P+KGKSDEGKVRK+LKVEPLPDGSGHFFNL VQNKL+NVDE++YIPIT+ E+TVL  AF 
Sbjct: 181 PFKGKSDEGKVRKVLKVEPLPDGSGHFFNLGVQNKLLNVDENVYIPITRGEFTVLKSAFS 240

Query: 241 FILPHLMGWHTIANTTMRPEDSSRVNNANPRYGGESGGFEWSR 276
           FILP+L+GWH  AN+T +P+D+SR NNANPRYGG+   +EWSR
Sbjct: 241 FILPYLLGWHAFANST-KPDDTSRANNANPRYGGD---YEWSR 270

[Close]

BLAST of Carg17617 vs. TrEMBL
Match: tr|A0A1U8I958|A0A1U8I958_GOSHI (single-stranded DNA-binding protein WHY1, chloroplastic-like isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107894079 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 1.7e-89
Identity = 173/283 (61.13%), Postives = 214/283 (75.62%), Query Frame = 0


Query: 1   MLRLQWLSSSLLPPLNPPELCAQPCKNPRR----CGFNSSR-QLFTLTATRKPSP---KC 60
           ML+LQ LSS   PPL P  +      NP+        NSS+ + F      KPS    KC
Sbjct: 1   MLQLQLLSS---PPLTPQTVNLNSISNPKLFPSFSSLNSSQTRSFKFNPLSKPSKFSLKC 60

Query: 61  QYASWNTQQPAFEPASQTDSFSPQTSAGAAAALPPRFFVGHSIYKGKAALSIEPRPPEFT 120
           + + +  Q+  F  +S        +S+ ++  LP RF+VGHSIYKGKAAL++EPR PEF 
Sbjct: 61  RQSEYFDQKQRFNDSS-------SSSSPSSLGLPGRFYVGHSIYKGKAALTVEPRAPEFV 120

Query: 121 PIDSGAFKVSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRESCEFFHD 180
           P+DSGAFK+SR+GFV+LQ APAAGVRQYDWSRKQVFSLS+TE+G+L++LG RESCEFFHD
Sbjct: 121 PLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTEIGTLISLGMRESCEFFHD 180

Query: 181 PYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFK 240
           P+KGKSDEGKVRK+LKVEPLPDGSGHFFNL VQNKL+NVDE++YIPIT+ E+TVL  AF 
Sbjct: 181 PFKGKSDEGKVRKVLKVEPLPDGSGHFFNLGVQNKLLNVDENVYIPITRGEFTVLKSAFS 240

Query: 241 FILPHLMGWHTIANTTMRPEDSSRVNNANPRYGGESGGFEWSR 276
           FILP+L+GWH  AN+T +P+D+SR NNANPRYGG+   +EWSR
Sbjct: 241 FILPYLLGWHAFANST-KPDDTSRANNANPRYGGD---YEWSR 269

[Close]

BLAST of Carg17617 vs. TrEMBL
Match: tr|A0A061EAM1|A0A061EAM1_THECC (SsDNA-binding transcriptional regulator isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_011795 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 3.0e-89
Identity = 176/286 (61.54%), Postives = 218/286 (76.22%), Query Frame = 0


Query: 1   MLRLQWLSSSLLPPLNPPELCAQPCKNPRRCGFNSSR--------QLFTLTATRKPSP-- 60
           ML+LQ+LSS   PPL+   L   P  N       SS         +L  L+ T KPS   
Sbjct: 1   MLQLQFLSS---PPLSAQSL--NPNSNTNLLSSFSSLKSTQTHAFKLNPLSLTPKPSKFS 60

Query: 61  -KCQYASWNTQQPAFEPASQTDSFSPQTSAGAAAALPPRFFVGHSIYKGKAALSIEPRPP 120
            KC+ + +  QQ  F       S S  T++  A+ LPPRF+VGHS+YKGKAAL++EPR P
Sbjct: 61  LKCRQSEYFDQQQRF-------SNSSSTASPPASGLPPRFYVGHSVYKGKAALTVEPRAP 120

Query: 121 EFTPIDSGAFKVSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRESCEF 180
           EF P+DSGAFK+SR+GFV+LQ APAAGVRQYDWSRKQVFSLS+TE+G+L++LG RESCEF
Sbjct: 121 EFVPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTEIGALISLGARESCEF 180

Query: 181 FHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVE 240
           FHDP+KGKS+EGKVRK+LKVEPLPDGSGHFFNL VQN+L+N+DE+IYIPIT+AE+TVL  
Sbjct: 181 FHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLGVQNRLLNLDENIYIPITRAEFTVLNS 240

Query: 241 AFKFILPHLMGWHTIANTTMRPEDSSRVNNANPRYGGESGGFEWSR 276
           AF FILP+L+GWH  AN +++PE++SRVNNANPRYGG+   +EWSR
Sbjct: 241 AFSFILPYLLGWHAFAN-SIKPEEASRVNNANPRYGGD---YEWSR 270

The following BLAST results are available for this feature:

BLAST of Carg17617 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951594.1	4.6e-158	100.00	single-stranded DNA-binding protein WHY1, chloroplastic-like [Cucurbita moschata...	[more]
XP_023537082.1	8.9e-154	97.82	single-stranded DNA-binding protein WHY1, chloroplastic-like [Cucurbita pepo sub...	[more]
XP_023002109.1	1.3e-152	97.82	single-stranded DNA-binding protein WHY1, chloroplastic-like [Cucurbita maxima]	[more]
XP_008456468.1	2.2e-128	83.81	PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic-like [Cucumis...	[more]
XP_022151332.1	4.8e-123	80.78	single-stranded DNA-binding protein WHY1, chloroplastic-like [Momordica charanti...	[more]

BLAST of Carg17617 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G14410.1	3.0e-87	64.75	ssDNA-binding transcriptional regulator	[more]
AT2G02740.1	2.1e-85	66.52	ssDNA-binding transcriptional regulator	[more]
AT1G71260.1	9.8e-46	48.89	WHIRLY 2	[more]

BLAST of Carg17617 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M9S3\|WHY1_ARATH	5.4e-86	64.75	Single-stranded DNA-binding protein WHY1, chloroplastic OS=Arabidopsis thaliana ...	[more]
sp\|Q66GR6\|WHY3_ARATH	3.9e-84	66.52	Single-stranded DNA-binding protein WHY3, chloroplastic OS=Arabidopsis thaliana ...	[more]
sp\|Q9LL85\|WHY1_SOLTU	6.2e-82	72.92	Single-stranded DNA-binding protein WHY1, chloroplastic OS=Solanum tuberosum OX=...	[more]
sp\|B2LXS7\|WHY1_MAIZE	2.5e-67	61.70	Single-stranded DNA-binding protein WHY1, chloroplastic OS=Zea mays OX=4577 GN=W...	[more]
sp\|Q8VYF7\|WHY2_ARATH	1.8e-44	48.89	Single-stranded DNA-binding protein WHY2, mitochondrial OS=Arabidopsis thaliana ...	[more]

BLAST of Carg17617 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C3B0\|A0A1S3C3B0_CUCME	1.5e-128	83.81	single-stranded DNA-binding protein WHY1, chloroplastic-like OS=Cucumis melo OX=...	[more]
tr\|A0A0A0KG25\|A0A0A0KG25_CUCSA	5.6e-120	79.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G404240 PE=4 SV=1	[more]
tr\|A0A1U8IFY8\|A0A1U8IFY8_GOSHI	2.7e-90	62.54	single-stranded DNA-binding protein WHY1, chloroplastic-like isoform X1 OS=Gossy...	[more]
tr\|A0A1U8I958\|A0A1U8I958_GOSHI	1.7e-89	61.13	single-stranded DNA-binding protein WHY1, chloroplastic-like isoform X2 OS=Gossy...	[more]
tr\|A0A061EAM1\|A0A061EAM1_THECC	3.0e-89	61.54	SsDNA-binding transcriptional regulator isoform 1 OS=Theobroma cacao OX=3641 GN=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003697	single-stranded DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006952	defense response
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR009044	ssDNA-bd_transcriptional_reg
IPR013742	Whirly

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17617-RA	Carg17617-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013742	Whirly transcription factor	PFAM	PF08536	Whirly	coord: 95..229 e-value: 1.3E-59 score: 199.7
IPR013742	Whirly transcription factor	PANTHER	PTHR31745	FAMILY NOT NAMED	coord: 39..275
IPR009044	ssDNA-binding transcriptional regulator	GENE3D	G3DSA:2.30.31.10		coord: 82..259 e-value: 1.7E-76 score: 257.8
IPR009044	ssDNA-binding transcriptional regulator	SUPERFAMILY	SSF54447	ssDNA-binding transcriptional regulator domain	coord: 87..267
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 251..275
None	No IPR available	PANTHER	PTHR31745:SF2	SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC-RELATED	coord: 39..275

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17617	Cla021884	Watermelon (97103) v1	carwmB0128
Carg17617	MELO3C019785	Melon (DHL92) v3.5.1	carmeB0135
Carg17617	ClCG08G008880	Watermelon (Charleston Gray)	carwcgB0129
Carg17617	CmaCh12G007150	Cucurbita maxima (Rimu)	carcmaB0172
Carg17617	CmaCh05G009320	Cucurbita maxima (Rimu)	carcmaB0174
Carg17617	CmoCh05G009520	Cucurbita moschata (Rifu)	carcmoB0183
Carg17617	CmoCh12G006480	Cucurbita moschata (Rifu)	carcmoB0181
Carg17617	Lsi08G007360	Bottle gourd (USVL1VR-Ls)	carlsiB120
Carg17617	Cp4.1LG07g05590	Cucurbita pepo (Zucchini)	carcpeB0193
Carg17617	Cp4.1LG11g07290	Cucurbita pepo (Zucchini)	carcpeB0191
Carg17617	MELO3C019785.2	Melon (DHL92) v3.6.1	carmedB0139
Carg17617	Cla97C08G151690	Watermelon (97103) v2	carwmbB0139
Carg17617	Bhi04G001019	Wax gourd	carwgoB0168

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None