Cp4.1LG11g03460 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG11g03460
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionZinc finger family protein
LocationCp4.1LG11 : 1823634 .. 1824623 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGGGACTAAATTTGGAGAGGAATAAAAGAAGCAGGATGAGCAGACCGGGGGATTGGAATTGTAGGTCTTGCCACCATCTCAACTTCCAACGACGGGAGTCCTGTCAGCGTTGTGGCGAGCCTAGGGCTGACTTCAGCGGCGGAAGAGTTGGTTCCTCGTCCTTTGGTTTCACTACTGGCCCCGACGTCCGTCCTGGGGATTGGTACTGCGCCGTCGCCAACTGCGGCGCTCATAACTTCGCTAGCCGCTCTATCTGCTTCAAGTGCGGCGCCTCTAAAGATGACGCTTCCCCTGCCGCCGCTTACGACGGCGATTTTACTAGAATGAGAGGCTTTAACTTCGGCGCTGCCTCCAACCGCCCTGGATGGAAATCTGGTGATTGGATCTGTTCCAGGTAGGGTTTCCAATTTTTCTCTAAATTCCATTTTCATCCCCACCACTTTCAATATTTTCAAATTTAGTCCATTTTTAATTATGATTTTTATTTTTTCATCCCATATCTACTAAATTAAACTATAAAAAAAAAAGTAAAAAATTAATGTTACAGATCAAATTGCAACGAGCATAACTTTGCCAACAGAAGAGAATGCTTCAGATGTAATGCACCAAGAGATTCAAACAACACGTCTCCATACTCGTACTCGTAGAGGTAATTAATTAATTAATTTCCAGAAACAAAATACCATATTTATAAATGGATCCCTAAACTCTTTCTCGGGTTTATCGGGTTTAATTAGTTATTAATATTATTATTTTGGGAATATTTTGCAATTTACAGGTGGTGGCAATGGAAGGATCAAATTCTAGCTAGAAAGAAGAGAGTTTCCAATCAGAACGTCGTCGTTTTCTTTTCTTTATTTTCCAGTTTCAAAAGTGATTTAAGGATGGATTTATGCATGCATGCAGGAAAATACTTCGTATCCAATTTTCTAATTTATATTATATTAATCCGTAACTTTCACTTTATGTTATGTGCTTGCCTCGAATTA

mRNA sequence

TTGGGACTAAATTTGGAGAGGAATAAAAGAAGCAGGATGAGCAGACCGGGGGATTGGAATTGTAGGTCTTGCCACCATCTCAACTTCCAACGACGGGAGTCCTGTCAGCGTTGTGGCGAGCCTAGGGCTGACTTCAGCGGCGGAAGAGTTGGTTCCTCGTCCTTTGGTTTCACTACTGGCCCCGACGTCCGTCCTGGGGATTGGTACTGCGCCGTCGCCAACTGCGGCGCTCATAACTTCGCTAGCCGCTCTATCTGCTTCAAGTGCGGCGCCTCTAAAGATGACGCTTCCCCTGCCGCCGCTTACGACGGCGATTTTACTAGAATGAGAGGCTTTAACTTCGGCGCTGCCTCCAACCGCCCTGGATGGAAATCTGGTGATTGGATCTGTTCCAGATCAAATTGCAACGAGCATAACTTTGCCAACAGAAGAGAATGCTTCAGATGTAATGCACCAAGAGATTCAAACAACACGTCTCCATACTCGTACTCGTAGAGGTGGTGGCAATGGAAGGATCAAATTCTAGCTAGAAAGAAGAGAGTTTCCAATCAGAACGTCGTCGTTTTCTTTTCTTTATTTTCCAGTTTCAAAAGTGATTTAAGGATGGATTTATGCATGCATGCAGGAAAATACTTCGTATCCAATTTTCTAATTTATATTATATTAATCCGTAACTTTCACTTTATGTTATGTGCTTGCCTCGAATTA

Coding sequence (CDS)

TTGGGACTAAATTTGGAGAGGAATAAAAGAAGCAGGATGAGCAGACCGGGGGATTGGAATTGTAGGTCTTGCCACCATCTCAACTTCCAACGACGGGAGTCCTGTCAGCGTTGTGGCGAGCCTAGGGCTGACTTCAGCGGCGGAAGAGTTGGTTCCTCGTCCTTTGGTTTCACTACTGGCCCCGACGTCCGTCCTGGGGATTGGTACTGCGCCGTCGCCAACTGCGGCGCTCATAACTTCGCTAGCCGCTCTATCTGCTTCAAGTGCGGCGCCTCTAAAGATGACGCTTCCCCTGCCGCCGCTTACGACGGCGATTTTACTAGAATGAGAGGCTTTAACTTCGGCGCTGCCTCCAACCGCCCTGGATGGAAATCTGGTGATTGGATCTGTTCCAGATCAAATTGCAACGAGCATAACTTTGCCAACAGAAGAGAATGCTTCAGATGTAATGCACCAAGAGATTCAAACAACACGTCTCCATACTCGTACTCGTAG

Protein sequence

LGLNLERNKRSRMSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAYDGDFTRMRGFNFGAASNRPGWKSGDWICSRSNCNEHNFANRRECFRCNAPRDSNNTSPYSYS
Homology
[Close]
BLAST of Cp4.1LG11g03460 vs. TrEMBL
Match: A0A0A0LLW7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380050 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 1.5e-74
Identity = 132/158 (83.54%), Postives = 142/158 (89.87%), Query Frame = 1 

Query: 11  SRMSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVG------SSSFGFTTGPDVR 70
           +RMSRPGDWNCRSC+HLNFQRR+SCQRCG+PRADF GG  G      SSSFGFTTGPDVR
Sbjct: 79  NRMSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVR 138

Query: 71  PGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAYDGDFTRMRGFNFGAASNRPGWK 130
           PGDWYC VANCGAHNFASRSICFKCGA+KD+ S AAAYDGD  RMRGFNFG ASNRPGWK
Sbjct: 139 PGDWYCTVANCGAHNFASRSICFKCGATKDETS-AAAYDGDLPRMRGFNFGGASNRPGWK 198

Query: 131 SGDWICSRSNCNEHNFANRRECFRCNAPRDSNNTSPYS 163
           SGDWIC+RS+CNEHNFA+RRECFRCNAPRDSN+ SPYS
Sbjct: 199 SGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 235

[Close]
BLAST of Cp4.1LG11g03460 vs. TrEMBL
Match: A0A0S3RC49_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G083200 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.3e-62
Identity = 116/153 (75.82%), Postives = 128/153 (83.66%), Query Frame = 1 

Query: 13  MSRPGDWNCRSCHHLNFQRRESCQRCGEPRA--DFSG--GRVGSSSFGFTTGPDVRPGDW 72
           MSRPGDWNCR+C+HLNFQRRESCQRCGEPR+  D+ G  G  GSSSFGFTTGPDVRPGDW
Sbjct: 1   MSRPGDWNCRTCNHLNFQRRESCQRCGEPRSGGDYGGAFGGRGSSSFGFTTGPDVRPGDW 60

Query: 73  YCAVANCGAHNFASRSICFKCGASKDDASPAAAYDGDFTRMRGFNF-GAASNRPGWKSGD 132
           YC V NCGAHNFASRS CFKCG SK+D+S   +YD D TRMR + F G +S RPGWKSGD
Sbjct: 61  YCTVGNCGAHNFASRSSCFKCGVSKEDSS-TGSYDVDITRMRPYGFGGGSSTRPGWKSGD 120

Query: 133 WICSRSNCNEHNFANRRECFRCNAPRDSNNTSP 161
           WIC+RS CNEHNFANR EC+RCNAPRDSN+  P
Sbjct: 121 WICTRSGCNEHNFANRMECYRCNAPRDSNSGRP 152

[Close]
BLAST of Cp4.1LG11g03460 vs. TrEMBL
Match: A0A0L9UHF7_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g216200 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.3e-62
Identity = 116/153 (75.82%), Postives = 128/153 (83.66%), Query Frame = 1 

Query: 13  MSRPGDWNCRSCHHLNFQRRESCQRCGEPRA--DFSG--GRVGSSSFGFTTGPDVRPGDW 72
           MSRPGDWNCR+C+HLNFQRRESCQRCGEPR+  D+ G  G  GSSSFGFTTGPDVRPGDW
Sbjct: 1   MSRPGDWNCRTCNHLNFQRRESCQRCGEPRSGGDYGGAFGGRGSSSFGFTTGPDVRPGDW 60

Query: 73  YCAVANCGAHNFASRSICFKCGASKDDASPAAAYDGDFTRMRGFNF-GAASNRPGWKSGD 132
           YC V NCGAHNFASRS CFKCG SK+D+S   +YD D TRMR + F G +S RPGWKSGD
Sbjct: 61  YCTVGNCGAHNFASRSSCFKCGVSKEDSS-TGSYDVDITRMRPYGFGGGSSTRPGWKSGD 120

Query: 133 WICSRSNCNEHNFANRRECFRCNAPRDSNNTSP 161
           WIC+RS CNEHNFANR EC+RCNAPRDSN+  P
Sbjct: 121 WICTRSGCNEHNFANRMECYRCNAPRDSNSGRP 152

[Close]
BLAST of Cp4.1LG11g03460 vs. TrEMBL
Match: V7AXS5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G094900g PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 2.2e-62
Identity = 116/153 (75.82%), Postives = 128/153 (83.66%), Query Frame = 1 

Query: 13  MSRPGDWNCRSCHHLNFQRRESCQRCGEPRA--DFSGG--RVGSSSFGFTTGPDVRPGDW 72
           MSRPGDWNCR+C+HLNFQRRESCQRCGEPR+  D+ GG    GSSSFGFTTGPDVRPGDW
Sbjct: 1   MSRPGDWNCRTCNHLNFQRRESCQRCGEPRSGGDYGGGFGGRGSSSFGFTTGPDVRPGDW 60

Query: 73  YCAVANCGAHNFASRSICFKCGASKDDASPAAAYDGDFTRMRGFNFGAASN-RPGWKSGD 132
           YC V NCGAHNFASRS CFKCG SK+D+S   +YD D TRMR F FG  S+ RPGWKSGD
Sbjct: 61  YCTVGNCGAHNFASRSSCFKCGVSKEDSS-TGSYDVDITRMRPFGFGGGSSARPGWKSGD 120

Query: 133 WICSRSNCNEHNFANRRECFRCNAPRDSNNTSP 161
           WIC+RS CNEHNFANR EC+RCNAPRDS++  P
Sbjct: 121 WICTRSGCNEHNFANRMECYRCNAPRDSSSGRP 152

[Close]
BLAST of Cp4.1LG11g03460 vs. TrEMBL
Match: I1JUE6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G068400 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 2.2e-62
Identity = 119/165 (72.12%), Postives = 132/165 (80.00%), Query Frame = 1 

Query: 8   NKRSRMSRPGDWNCRSCHHLNFQRRESCQRCGEPRAD--------FSGGRVGSSSFGFTT 67
           N   +MSRPGDWNCR+C+HLNFQRRESCQRCGEPR+         F GGR GSSSFGFTT
Sbjct: 8   NYEGKMSRPGDWNCRTCNHLNFQRRESCQRCGEPRSGGGGDYGGGFGGGR-GSSSFGFTT 67

Query: 68  GPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAYDGDFTRMRGFNFGAASN 127
           GPDVRPGDWYC V NCGAHNFASRS CFKCGA K+D+S A  +D D  RMR + FG  S+
Sbjct: 68  GPDVRPGDWYCTVGNCGAHNFASRSSCFKCGAPKEDSS-AGPFDADMPRMRPYGFGGGSS 127

Query: 128 -RPGWKSGDWICSRSNCNEHNFANRRECFRCNAPRDSNNT-SPYS 163
            RPGWKSGDWIC+RS CNEHNFANR EC+RCNAPRDS++  SPYS
Sbjct: 128 ARPGWKSGDWICTRSGCNEHNFANRMECYRCNAPRDSSSARSPYS 170

[Close]
BLAST of Cp4.1LG11g03460 vs. TAIR10
Match: AT3G15680.1 (AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein)

HSP 1 Score: 198.4 bits (503), Expect = 3.5e-51
Identity = 103/167 (61.68%), Postives = 111/167 (66.47%), Query Frame = 1 

Query: 13  MSRPGDWNCRSCHHLNFQRRESCQRCGEPRA--------DFS--GGRVGSSSFGFTTGPD 72
           MSRPGDWNCRSC HLNFQRR+SCQRCG+ R+        DF   GGR   S+FGFTTG D
Sbjct: 1   MSRPGDWNCRSCSHLNFQRRDSCQRCGDSRSGPGGVGGLDFGNFGGRA-MSAFGFTTGSD 60

Query: 73  VRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPA---------AAYDGDFTRMRGFN 132
           VRPGDWYC V NCG HNFASRS CFKCG  KD+             A +D D  R R   
Sbjct: 61  VRPGDWYCTVGNCGTHNFASRSTCFKCGTFKDETGAGGGGGGIGGPAMFDADIMRSRVPG 120

Query: 133 FGAASNRPGWKSGDWICSRSNCNEHNFANRRECFRCNAPRD-SNNTS 160
            G    R  WKSGDWIC+R  CNEHNFA+R ECFRCNAPRD SN TS
Sbjct: 121 NG---GRSSWKSGDWICTRIGCNEHNFASRMECFRCNAPRDFSNRTS 163

[Close]
BLAST of Cp4.1LG11g03460 vs. TAIR10
Match: AT5G25490.1 (AT5G25490.1 Ran BP2/NZF zinc finger-like superfamily protein)

HSP 1 Score: 198.0 bits (502), Expect = 4.6e-51
Identity = 101/170 (59.41%), Postives = 113/170 (66.47%), Query Frame = 1 

Query: 13  MSRPGDWNCRSCHHLNFQRRESCQRCGEPRA--------DFSGGRVGSSSFGFTTGPDVR 72
           M+RPGDWNCR C HLNFQRR+SCQRC EPR            GGR  SSSFGF TGPDVR
Sbjct: 1   MNRPGDWNCRLCSHLNFQRRDSCQRCREPRPGGISTDLLSGFGGRPVSSSFGFNTGPDVR 60

Query: 73  PGDWYCAVANCGAHNFASRSICFKCGASKDD--ASPAAAYDGDFTRMRG-----FNFGAA 132
           PGDWYC + +CG HNFA+RS CFKCGA+KD+   S AAA  G      G     F FG +
Sbjct: 61  PGDWYCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMDMNVGPRRGLFGFGGS 120

Query: 133 SN------RPGWKSGDWICSRSNCNEHNFANRRECFRCNAPRDSNNTSPY 162
           S+      R  WKSGDWIC RS CNEHNFA+R ECFRCNAP++     PY
Sbjct: 121 SSGGGGTGRSPWKSGDWICPRSGCNEHNFASRSECFRCNAPKELATEPPY 170

[Close]
BLAST of Cp4.1LG11g03460 vs. TAIR10
Match: AT2G26695.1 (AT2G26695.1 Ran BP2/NZF zinc finger-like superfamily protein)

HSP 1 Score: 131.3 bits (329), Expect = 5.3e-31
Identity = 62/138 (44.93%), Postives = 85/138 (61.59%), Query Frame = 1 

Query: 17  GDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAVANCG 76
           GDW C +C H NF++RESCQ+CG P+  F G  V +  +  T   +V  GDWYC   NCG
Sbjct: 6   GDWLCGACQHANFKKRESCQKCGYPK--FGGVDVSTYLYNRT---EVMAGDWYCGALNCG 65

Query: 77  AHNFASRSICFKCGASKDDASPAAAYDGDFTRMRGFNFGAASNRPGWKSGDWICSRSNCN 136
           +HN+ASR+ C++CG  K + +    Y G   +M  +    A+  PGWK+GDW+C R  C 
Sbjct: 66  SHNYASRTSCYRCGMIKVEYTEQ--YYG--AQMVAYGNDGAACPPGWKTGDWVCPRVGCG 125

Query: 137 EHNFANRRECFRCNAPRD 155
            HN+A+R ECF+C   RD
Sbjct: 126 VHNYASRAECFKCKTTRD 134

[Close]
BLAST of Cp4.1LG11g03460 vs. TAIR10
Match: AT2G17975.1 (AT2G17975.1 zinc finger (Ran-binding) family protein)

HSP 1 Score: 77.4 bits (189), Expect = 9.1e-15
Identity = 54/157 (34.39%), Postives = 72/157 (45.86%), Query Frame = 1 

Query: 15  RPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAVAN 74
           R GDW C  C + N+  R  C RC +PR         +S +        R GDW C    
Sbjct: 5   REGDWECLGCRNRNYAFRSFCNRCKQPRLIMDNNTSPNSKW------LPRIGDWIC--TG 64

Query: 75  CGAHNFASRSICFKCGASKDDAS-PAAAYDGDF--TRMRGFNFGAAS-NRPG-------- 134
           C  +N+ASR  C KCG SK+ A+  A A  G    T +  F  G  S ++PG        
Sbjct: 65  CTNNNYASREKCKKCGQSKEVAALSALAIPGASLQTHLHYFTRGPESHDQPGSLLAFSNA 124

Query: 135 ---------WKSGDWICSRSNCNEHNFANRRECFRCN 151
                    W+SGDWIC    C  HN+++R +C +CN
Sbjct: 125 TNQASVHKEWRSGDWIC---RCGFHNYSSRIQCKKCN 150

[Close]
BLAST of Cp4.1LG11g03460 vs. TAIR10
Match: AT1G48570.1 (AT1G48570.1 zinc finger (Ran-binding) family protein)

HSP 1 Score: 53.5 bits (127), Expect = 1.4e-07
Identity = 43/157 (27.39%), Postives = 54/157 (34.39%), Query Frame = 1 

Query: 4   NLERNKRSRMSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDV 63
           N E ++R R     DW C  C  +NF R E C+ C E         V            V
Sbjct: 288 NDESSQRDRPLYSADWACPKCDFVNFARNERCRECNEVADRRPVAAV------------V 347

Query: 64  RPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAYDGDFTRMRGFNFGAASNRPGW 123
           + GDW C    C   NF     C KC A                  +G    +  N    
Sbjct: 348 KEGDWLC--PECSFLNFTRNQSCLKCKA------------------KGPKKTSMVNIVEM 407

Query: 124 KSGDWICSRSNCNEHNFANRRECFRCNAPRDSNNTSP 161
           K GDW C  + C   NFA+ ++C  C   R      P
Sbjct: 408 KKGDWNC--TGCGYMNFASNKQCRECREQRHKTLAEP 410

[Close]
BLAST of Cp4.1LG11g03460 vs. NCBI nr
Match: gi|700207806|gb|KGN62925.1| (hypothetical protein Csa_2G380050 [Cucumis sativus])

HSP 1 Score: 287.0 bits (733), Expect = 2.1e-74
Identity = 132/158 (83.54%), Postives = 142/158 (89.87%), Query Frame = 1 

Query: 11  SRMSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVG------SSSFGFTTGPDVR 70
           +RMSRPGDWNCRSC+HLNFQRR+SCQRCG+PRADF GG  G      SSSFGFTTGPDVR
Sbjct: 79  NRMSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVR 138

Query: 71  PGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAYDGDFTRMRGFNFGAASNRPGWK 130
           PGDWYC VANCGAHNFASRSICFKCGA+KD+ S AAAYDGD  RMRGFNFG ASNRPGWK
Sbjct: 139 PGDWYCTVANCGAHNFASRSICFKCGATKDETS-AAAYDGDLPRMRGFNFGGASNRPGWK 198

Query: 131 SGDWICSRSNCNEHNFANRRECFRCNAPRDSNNTSPYS 163
           SGDWIC+RS+CNEHNFA+RRECFRCNAPRDSN+ SPYS
Sbjct: 199 SGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 235

[Close]
BLAST of Cp4.1LG11g03460 vs. NCBI nr
Match: gi|449441928|ref|XP_004138734.1| (PREDICTED: uncharacterized RNA-binding protein C17H9.04c [Cucumis sativus])

HSP 1 Score: 285.0 bits (728), Expect = 8.1e-74
Identity = 131/156 (83.97%), Postives = 140/156 (89.74%), Query Frame = 1 

Query: 13  MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVG------SSSFGFTTGPDVRPG 72
           MSRPGDWNCRSC+HLNFQRR+SCQRCG+PRADF GG  G      SSSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 60

Query: 73  DWYCAVANCGAHNFASRSICFKCGASKDDASPAAAYDGDFTRMRGFNFGAASNRPGWKSG 132
           DWYC VANCGAHNFASRSICFKCGA+KD+ S AAAYDGD  RMRGFNFG ASNRPGWKSG
Sbjct: 61  DWYCTVANCGAHNFASRSICFKCGATKDETS-AAAYDGDLPRMRGFNFGGASNRPGWKSG 120

Query: 133 DWICSRSNCNEHNFANRRECFRCNAPRDSNNTSPYS 163
           DWIC+RS+CNEHNFA+RRECFRCNAPRDSN+ SPYS
Sbjct: 121 DWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 155

[Close]
BLAST of Cp4.1LG11g03460 vs. NCBI nr
Match: gi|950969071|ref|XP_014499728.1| (PREDICTED: transcription initiation factor TFIID subunit 15-like [Vigna radiata var. radiata])

HSP 1 Score: 247.3 bits (630), Expect = 1.9e-62
Identity = 116/153 (75.82%), Postives = 129/153 (84.31%), Query Frame = 1 

Query: 13  MSRPGDWNCRSCHHLNFQRRESCQRCGEPRA--DFSG--GRVGSSSFGFTTGPDVRPGDW 72
           MSRPGDWNCR+C+HLNFQRRESCQRCGEPR+  D+ G  G  GSSSFGFTTGPDVRPGDW
Sbjct: 1   MSRPGDWNCRTCNHLNFQRRESCQRCGEPRSAGDYGGAFGGRGSSSFGFTTGPDVRPGDW 60

Query: 73  YCAVANCGAHNFASRSICFKCGASKDDASPAAAYDGDFTRMRGFNFGAASN-RPGWKSGD 132
           YC V NCGAHNFASRS CFKCG SK+D+S   +YD D TRMR + FG+ S+ RPGWKSGD
Sbjct: 61  YCTVGNCGAHNFASRSSCFKCGVSKEDSS-TGSYDLDITRMRPYGFGSGSSARPGWKSGD 120

Query: 133 WICSRSNCNEHNFANRRECFRCNAPRDSNNTSP 161
           WIC+RS CNEHNFANR EC+RCNAPRDSN+  P
Sbjct: 121 WICTRSGCNEHNFANRMECYRCNAPRDSNSGRP 152

[Close]
BLAST of Cp4.1LG11g03460 vs. NCBI nr
Match: gi|920698739|gb|KOM41964.1| (hypothetical protein LR48_Vigan04g216200 [Vigna angularis])

HSP 1 Score: 247.3 bits (630), Expect = 1.9e-62
Identity = 116/153 (75.82%), Postives = 128/153 (83.66%), Query Frame = 1 

Query: 13  MSRPGDWNCRSCHHLNFQRRESCQRCGEPRA--DFSG--GRVGSSSFGFTTGPDVRPGDW 72
           MSRPGDWNCR+C+HLNFQRRESCQRCGEPR+  D+ G  G  GSSSFGFTTGPDVRPGDW
Sbjct: 1   MSRPGDWNCRTCNHLNFQRRESCQRCGEPRSGGDYGGAFGGRGSSSFGFTTGPDVRPGDW 60

Query: 73  YCAVANCGAHNFASRSICFKCGASKDDASPAAAYDGDFTRMRGFNF-GAASNRPGWKSGD 132
           YC V NCGAHNFASRS CFKCG SK+D+S   +YD D TRMR + F G +S RPGWKSGD
Sbjct: 61  YCTVGNCGAHNFASRSSCFKCGVSKEDSS-TGSYDVDITRMRPYGFGGGSSTRPGWKSGD 120

Query: 133 WICSRSNCNEHNFANRRECFRCNAPRDSNNTSP 161
           WIC+RS CNEHNFANR EC+RCNAPRDSN+  P
Sbjct: 121 WICTRSGCNEHNFANRMECYRCNAPRDSNSGRP 152

[Close]
BLAST of Cp4.1LG11g03460 vs. NCBI nr
Match: gi|593279185|ref|XP_007137042.1| (hypothetical protein PHAVU_009G094900g [Phaseolus vulgaris])

HSP 1 Score: 246.5 bits (628), Expect = 3.2e-62
Identity = 116/153 (75.82%), Postives = 128/153 (83.66%), Query Frame = 1 

Query: 13  MSRPGDWNCRSCHHLNFQRRESCQRCGEPRA--DFSGG--RVGSSSFGFTTGPDVRPGDW 72
           MSRPGDWNCR+C+HLNFQRRESCQRCGEPR+  D+ GG    GSSSFGFTTGPDVRPGDW
Sbjct: 1   MSRPGDWNCRTCNHLNFQRRESCQRCGEPRSGGDYGGGFGGRGSSSFGFTTGPDVRPGDW 60

Query: 73  YCAVANCGAHNFASRSICFKCGASKDDASPAAAYDGDFTRMRGFNFGAASN-RPGWKSGD 132
           YC V NCGAHNFASRS CFKCG SK+D+S   +YD D TRMR F FG  S+ RPGWKSGD
Sbjct: 61  YCTVGNCGAHNFASRSSCFKCGVSKEDSS-TGSYDVDITRMRPFGFGGGSSARPGWKSGD 120

Query: 133 WICSRSNCNEHNFANRRECFRCNAPRDSNNTSP 161
           WIC+RS CNEHNFANR EC+RCNAPRDS++  P
Sbjct: 121 WICTRSGCNEHNFANRMECYRCNAPRDSSSGRP 152

The following BLAST results are available for this feature:
BLAST of Cp4.1LG11g03460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG11g03460 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLW7_CUCSA1.5e-7483.54Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380050 PE=4 SV=1[more]
A0A0S3RC49_PHAAN1.3e-6275.82Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G083200 PE=... [more]
A0A0L9UHF7_PHAAN1.3e-6275.82Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g216200 PE=4 SV=1[more]
V7AXS5_PHAVU2.2e-6275.82Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G094900g PE=4 SV=1[more]
I1JUE6_SOYBN2.2e-6272.12Uncharacterized protein OS=Glycine max GN=GLYMA_04G068400 PE=4 SV=1[more]
BLAST of Cp4.1LG11g03460 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G15680.13.5e-5161.68 Ran BP2/NZF zinc finger-like superfamily protein[more]
AT5G25490.14.6e-5159.41 Ran BP2/NZF zinc finger-like superfamily protein[more]
AT2G26695.15.3e-3144.93 Ran BP2/NZF zinc finger-like superfamily protein[more]
AT2G17975.19.1e-1534.39 zinc finger (Ran-binding) family protein[more]
AT1G48570.11.4e-0727.39 zinc finger (Ran-binding) family protein[more]
BLAST of Cp4.1LG11g03460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207806|gb|KGN62925.1|2.1e-7483.54hypothetical protein Csa_2G380050 [Cucumis sativus][more]
gi|449441928|ref|XP_004138734.1|8.1e-7483.97PREDICTED: uncharacterized RNA-binding protein C17H9.04c [Cucumis sativus][more]
gi|950969071|ref|XP_014499728.1|1.9e-6275.82PREDICTED: transcription initiation factor TFIID subunit 15-like [Vigna radiata ... [more]
gi|920698739|gb|KOM41964.1|1.9e-6275.82hypothetical protein LR48_Vigan04g216200 [Vigna angularis][more]
gi|593279185|ref|XP_007137042.1|3.2e-6275.82hypothetical protein PHAVU_009G094900g [Phaseolus vulgaris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR001876Znf_RanBP2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g03460.1Cp4.1LG11g03460.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001876Zinc finger, RanBP2-typeGENE3DG3DSA:4.10.1060.10coord: 11..43
score: 1.0E-12coord: 60..95
score: 2.1E-15coord: 118..155
score: 2.2
IPR001876Zinc finger, RanBP2-typePFAMPF00641zf-RanBPcoord: 124..153
score: 4.1E-8coord: 15..42
score: 0.0016coord: 64..93
score: 5.
IPR001876Zinc finger, RanBP2-typeSMARTSM00547zf_4coord: 66..92
score: 4.4E-7coord: 126..152
score: 2.4E-4coord: 17..41
score: 2.
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 68..89
score: -coord: 19..38
score: -coord: 128..149
scor
IPR001876Zinc finger, RanBP2-typePROFILEPS50199ZF_RANBP2_2coord: 124..155
score: 10.591coord: 64..95
score: 10.015coord: 15..44
score: 9
IPR001876Zinc finger, RanBP2-typeunknownSSF90209Ran binding protein zinc finger-likecoord: 60..95
score: 5.02E-11coord: 118..156
score: 5.96E-11coord: 7..44
score: 6.
NoneNo IPR availablePANTHERPTHR23111ZINC FINGER PROTEINcoord: 6..163
score: 4.1
NoneNo IPR availablePANTHERPTHR23111:SF21SUBFAMILY NOT NAMEDcoord: 6..163
score: 4.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG11g03460Cucsa.162240Cucumber (Gy14) v1cgycpeB0430
Cp4.1LG11g03460CmaCh12G003270Cucurbita maxima (Rimu)cmacpeB179
Cp4.1LG11g03460CmaCh05G003960Cucurbita maxima (Rimu)cmacpeB766
Cp4.1LG11g03460CmoCh05G004090Cucurbita moschata (Rifu)cmocpeB720
Cp4.1LG11g03460CmoCh10G006070Cucurbita moschata (Rifu)cmocpeB050
Cp4.1LG11g03460CmoCh12G002770Cucurbita moschata (Rifu)cmocpeB154
Cp4.1LG11g03460Cla022308Watermelon (97103) v1cpewmB101
Cp4.1LG11g03460Csa2G380050Cucumber (Chinese Long) v2cpecuB105
Cp4.1LG11g03460MELO3C011238Melon (DHL92) v3.5.1cpemeB089
Cp4.1LG11g03460ClCG08G013170Watermelon (Charleston Gray)cpewcgB125
Cp4.1LG11g03460CSPI02G23260Wild cucumber (PI 183967)cpecpiB101
Cp4.1LG11g03460Lsi08G011800Bottle gourd (USVL1VR-Ls)cpelsiB100
Cp4.1LG11g03460MELO3C011238.2Melon (DHL92) v3.6.1cpemedB112
Cp4.1LG11g03460CsaV3_2G031890Cucumber (Chinese Long) v3cpecucB0116
Cp4.1LG11g03460Bhi04G000803Wax gourdcpewgoB0137
Cp4.1LG11g03460CsGy2G023050Cucumber (Gy14) v2cgybcpeB169
Cp4.1LG11g03460Carg03916Silver-seed gourdcarcpeB1352
Cp4.1LG11g03460Carg09326Silver-seed gourdcarcpeB0199
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG11g03460Cp4.1LG18g04690Cucurbita pepo (Zucchini)cpecpeB115
Cp4.1LG11g03460Cp4.1LG07g02810Cucurbita pepo (Zucchini)cpecpeB146
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG11g03460Cucumber (Chinese Long) v3cpecucB0124
Cp4.1LG11g03460Wax gourdcpewgoB0161
Cp4.1LG11g03460Cucurbita pepo (Zucchini)cpecpeB121
Cp4.1LG11g03460Cucumber (Gy14) v1cgycpeB0813
Cp4.1LG11g03460Wild cucumber (PI 183967)cpecpiB109
Cp4.1LG11g03460Cucumber (Chinese Long) v2cpecuB113
Cp4.1LG11g03460Bottle gourd (USVL1VR-Ls)cpelsiB087
Cp4.1LG11g03460Watermelon (Charleston Gray)cpewcgB110
Cp4.1LG11g03460Watermelon (97103) v1cpewmB106
Cp4.1LG11g03460Melon (DHL92) v3.5.1cpemeB097
Cp4.1LG11g03460Cucumber (Gy14) v2cgybcpeB299
Cp4.1LG11g03460Melon (DHL92) v3.6.1cpemedB121