CmaCh05G003960 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh05G003960
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionZinc finger (Ran-binding) family protein
LocationCma_Chr05 : 1733277 .. 1733897 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAAAAAAGAAGGACAAAAATCGCAGTTCACCGGTATAAAACCCACCACCACCGGCTGTTTCGTCAGAGAAACGTGATCAGGCCATTAAAACCGAACCGCCGCCGCATCAACTTCACGCAAAAGGTAAGCTTTCCGGTTAATTAGAGTTCATTTGTTTTTTGGCGTTAAGGGTTGGGACTAAATTTGGAGGGGAATACAAAGAAGCAGGATGAGCAGGCCGGGGGATTGGAATTGCAGGTCTTGCCACCATCTCAACTTCCAACGACGGGAGTCCTGTCAGCGCTGTGGCGAGCCTAGGGCTGACTTCAACGGCGGAAGAGTTGGTTCTTCGTCCTTCGGTTTCACTACCGGCCCCGACGTCCGTCCTGGGGATTGGTACTGCGCCGTCGCCAACTGCGGTGCTCATAACTTCGCTAGCCGCTCTATCTGCTTCAAGTGCGGCGCTTCTAAAGATGACGCTTCCCCTGCCTCCGCCGCCGCTTACGACGGCGATTTTACTAGAATGAGAGGCTTTAACTTCGGCGCTGCCTCCAACCGCCCTGGATGGAAATCTGGTGATTGGATCTGTTCCAGGTAGGGTTTCCAATTTTTCTCTAAATTCCATTTTCATCCCCAC

mRNA sequence

AAAAAAAAAAAAGAAGGACAAAAATCGCAGTTCACCGGTATAAAACCCACCACCACCGGCTGTTTCGTCAGAGAAACGTGATCAGGCCATTAAAACCGAACCGCCGCCGCATCAACTTCACGCAAAAGATGAGCAGGCCGGGGGATTGGAATTGCAGGTCTTGCCACCATCTCAACTTCCAACGACGGGAGTCCTGTCAGCGCTGTGGCGAGCCTAGGGCTGACTTCAACGGCGGAAGAGTTGGTTCTTCGTCCTTCGGTTTCACTACCGGCCCCGACGTCCGTCCTGGGGATTGGTACTGCGCCGTCGCCAACTGCGGTGCTCATAACTTCGCTAGCCGCTCTATCTGCTTCAAGTGCGGCGCTTCTAAAGATGACGCTTCCCCTGCCTCCGCCGCCGCTTACGACGGCGATTTTACTAGAATGAGAGGCTTTAACTTCGGCGCTGCCTCCAACCGCCCTGGATGGAAATCTGGTGATTGGATCTGTTCCAGGTAGGGTTTCCAATTTTTCTCTAAATTCCATTTTCATCCCCAC

Coding sequence (CDS)

ATGAGCAGGCCGGGGGATTGGAATTGCAGGTCTTGCCACCATCTCAACTTCCAACGACGGGAGTCCTGTCAGCGCTGTGGCGAGCCTAGGGCTGACTTCAACGGCGGAAGAGTTGGTTCTTCGTCCTTCGGTTTCACTACCGGCCCCGACGTCCGTCCTGGGGATTGGTACTGCGCCGTCGCCAACTGCGGTGCTCATAACTTCGCTAGCCGCTCTATCTGCTTCAAGTGCGGCGCTTCTAAAGATGACGCTTCCCCTGCCTCCGCCGCCGCTTACGACGGCGATTTTACTAGAATGAGAGGCTTTAACTTCGGCGCTGCCTCCAACCGCCCTGGATGGAAATCTGGTGATTGGATCTGTTCCAGGTAG

Protein sequence

MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFNGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPASAAAYDGDFTRMRGFNFGAASNRPGWKSGDWICSR
Homology
[Close]
BLAST of CmaCh05G003960 vs. TrEMBL
Match: A0A0A0LLW7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380050 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 2.7e-57
Identity = 105/128 (82.03%), Postives = 111/128 (86.72%), Query Frame = 1 

Query: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFNGGRVG------SSSFGFTTGPDVRPG 60
           MSRPGDWNCRSC+HLNFQRR+SCQRCG+PRADF GG  G      SSSFGFTTGPDVRPG
Sbjct: 81  MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 140

Query: 61  DWYCAVANCGAHNFASRSICFKCGASKDDASPASAAAYDGDFTRMRGFNFGAASNRPGWK 120
           DWYC VANCGAHNFASRSICFKCGA+KD+    SAAAYDGD  RMRGFNFG ASNRPGWK
Sbjct: 141 DWYCTVANCGAHNFASRSICFKCGATKDE---TSAAAYDGDLPRMRGFNFGGASNRPGWK 200

Query: 121 SGDWICSR 123
           SGDWIC+R
Sbjct: 201 SGDWICAR 205

[Close]
BLAST of CmaCh05G003960 vs. TrEMBL
Match: V7AXS5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G094900g PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 4.7e-49
Identity = 96/127 (75.59%), Postives = 104/127 (81.89%), Query Frame = 1 

Query: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPRA--DFNGG--RVGSSSFGFTTGPDVRPGDW 60
           MSRPGDWNCR+C+HLNFQRRESCQRCGEPR+  D+ GG    GSSSFGFTTGPDVRPGDW
Sbjct: 1   MSRPGDWNCRTCNHLNFQRRESCQRCGEPRSGGDYGGGFGGRGSSSFGFTTGPDVRPGDW 60

Query: 61  YCAVANCGAHNFASRSICFKCGASKDDASPASAAAYDGDFTRMRGFNFGAASN-RPGWKS 120
           YC V NCGAHNFASRS CFKCG SK+D+S  S   YD D TRMR F FG  S+ RPGWKS
Sbjct: 61  YCTVGNCGAHNFASRSSCFKCGVSKEDSSTGS---YDVDITRMRPFGFGGGSSARPGWKS 120

Query: 121 GDWICSR 123
           GDWIC+R
Sbjct: 121 GDWICTR 124

[Close]
BLAST of CmaCh05G003960 vs. TrEMBL
Match: A0A0L9UHF7_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g216200 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.0e-48
Identity = 95/127 (74.80%), Postives = 104/127 (81.89%), Query Frame = 1 

Query: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPRA--DFNG--GRVGSSSFGFTTGPDVRPGDW 60
           MSRPGDWNCR+C+HLNFQRRESCQRCGEPR+  D+ G  G  GSSSFGFTTGPDVRPGDW
Sbjct: 1   MSRPGDWNCRTCNHLNFQRRESCQRCGEPRSGGDYGGAFGGRGSSSFGFTTGPDVRPGDW 60

Query: 61  YCAVANCGAHNFASRSICFKCGASKDDASPASAAAYDGDFTRMRGFNF-GAASNRPGWKS 120
           YC V NCGAHNFASRS CFKCG SK+D+S  S   YD D TRMR + F G +S RPGWKS
Sbjct: 61  YCTVGNCGAHNFASRSSCFKCGVSKEDSSTGS---YDVDITRMRPYGFGGGSSTRPGWKS 120

Query: 121 GDWICSR 123
           GDWIC+R
Sbjct: 121 GDWICTR 124

[Close]
BLAST of CmaCh05G003960 vs. TrEMBL
Match: A0A0S3RC49_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G083200 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.0e-48
Identity = 95/127 (74.80%), Postives = 104/127 (81.89%), Query Frame = 1 

Query: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPRA--DFNG--GRVGSSSFGFTTGPDVRPGDW 60
           MSRPGDWNCR+C+HLNFQRRESCQRCGEPR+  D+ G  G  GSSSFGFTTGPDVRPGDW
Sbjct: 1   MSRPGDWNCRTCNHLNFQRRESCQRCGEPRSGGDYGGAFGGRGSSSFGFTTGPDVRPGDW 60

Query: 61  YCAVANCGAHNFASRSICFKCGASKDDASPASAAAYDGDFTRMRGFNF-GAASNRPGWKS 120
           YC V NCGAHNFASRS CFKCG SK+D+S  S   YD D TRMR + F G +S RPGWKS
Sbjct: 61  YCTVGNCGAHNFASRSSCFKCGVSKEDSSTGS---YDVDITRMRPYGFGGGSSTRPGWKS 120

Query: 121 GDWICSR 123
           GDWIC+R
Sbjct: 121 GDWICTR 124

[Close]
BLAST of CmaCh05G003960 vs. TrEMBL
Match: I1JUE6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G068400 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.2e-47
Identity = 94/131 (71.76%), Postives = 103/131 (78.63%), Query Frame = 1 

Query: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPRAD--------FNGGRVGSSSFGFTTGPDVR 60
           MSRPGDWNCR+C+HLNFQRRESCQRCGEPR+         F GGR GSSSFGFTTGPDVR
Sbjct: 13  MSRPGDWNCRTCNHLNFQRRESCQRCGEPRSGGGGDYGGGFGGGR-GSSSFGFTTGPDVR 72

Query: 61  PGDWYCAVANCGAHNFASRSICFKCGASKDDASPASAAAYDGDFTRMRGFNFGAASN-RP 120
           PGDWYC V NCGAHNFASRS CFKCGA K+D   +SA  +D D  RMR + FG  S+ RP
Sbjct: 73  PGDWYCTVGNCGAHNFASRSSCFKCGAPKED---SSAGPFDADMPRMRPYGFGGGSSARP 132

Query: 121 GWKSGDWICSR 123
           GWKSGDWIC+R
Sbjct: 133 GWKSGDWICTR 139

[Close]
BLAST of CmaCh05G003960 vs. TAIR10
Match: AT5G25490.1 (AT5G25490.1 Ran BP2/NZF zinc finger-like superfamily protein)

HSP 1 Score: 162.2 bits (409), Expect = 2.1e-40
Identity = 83/141 (58.87%), Postives = 93/141 (65.96%), Query Frame = 1 

Query: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPRA--------DFNGGRVGSSSFGFTTGPDVR 60
           M+RPGDWNCR C HLNFQRR+SCQRC EPR            GGR  SSSFGF TGPDVR
Sbjct: 1   MNRPGDWNCRLCSHLNFQRRDSCQRCREPRPGGISTDLLSGFGGRPVSSSFGFNTGPDVR 60

Query: 61  PGDWYCAVANCGAHNFASRSICFKCGASKDDASPASAAAYDGDFTRMRG-----FNFGAA 120
           PGDWYC + +CG HNFA+RS CFKCGA+KD+ S +SAAA  G      G     F FG +
Sbjct: 61  PGDWYCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMDMNVGPRRGLFGFGGS 120

Query: 121 SN------RPGWKSGDWICSR 123
           S+      R  WKSGDWIC R
Sbjct: 121 SSGGGGTGRSPWKSGDWICPR 141

[Close]
BLAST of CmaCh05G003960 vs. TAIR10
Match: AT3G15680.1 (AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein)

HSP 1 Score: 158.3 bits (399), Expect = 3.0e-39
Identity = 81/139 (58.27%), Postives = 88/139 (63.31%), Query Frame = 1 

Query: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPRA--------DFN--GGRVGSSSFGFTTGPD 60
           MSRPGDWNCRSC HLNFQRR+SCQRCG+ R+        DF   GGR   S+FGFTTG D
Sbjct: 1   MSRPGDWNCRSCSHLNFQRRDSCQRCGDSRSGPGGVGGLDFGNFGGRA-MSAFGFTTGSD 60

Query: 61  VRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPASA-------AAYDGDFTRMRGFN 120
           VRPGDWYC V NCG HNFASRS CFKCG  KD+             A +D D  R R   
Sbjct: 61  VRPGDWYCTVGNCGTHNFASRSTCFKCGTFKDETGAGGGGGGIGGPAMFDADIMRSRVPG 120

Query: 121 FGAASNRPGWKSGDWICSR 123
            G    R  WKSGDWIC+R
Sbjct: 121 NG---GRSSWKSGDWICTR 135

[Close]
BLAST of CmaCh05G003960 vs. TAIR10
Match: AT2G26695.1 (AT2G26695.1 Ran BP2/NZF zinc finger-like superfamily protein)

HSP 1 Score: 105.1 bits (261), Expect = 3.0e-23
Identity = 50/118 (42.37%), Postives = 70/118 (59.32%), Query Frame = 1 

Query: 5   GDWNCRSCHHLNFQRRESCQRCGEPRADFNGGRVGSSSFGFTTGPDVRPGDWYCAVANCG 64
           GDW C +C H NF++RESCQ+CG P+  F G  V +  +  T   +V  GDWYC   NCG
Sbjct: 6   GDWLCGACQHANFKKRESCQKCGYPK--FGGVDVSTYLYNRT---EVMAGDWYCGALNCG 65

Query: 65  AHNFASRSICFKCGASKDDASPASAAAYDGDFTRMRGFNFGAASNRPGWKSGDWICSR 123
           +HN+ASR+ C++CG  K + +     A      +M  +    A+  PGWK+GDW+C R
Sbjct: 66  SHNYASRTSCYRCGMIKVEYTEQYYGA------QMVAYGNDGAACPPGWKTGDWVCPR 112

[Close]
BLAST of CmaCh05G003960 vs. TAIR10
Match: AT2G17975.1 (AT2G17975.1 zinc finger (Ran-binding) family protein)

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-11
Identity = 45/137 (32.85%), Postives = 61/137 (44.53%), Query Frame = 1 

Query: 3   RPGDWNCRSCHHLNFQRRESCQRCGEPRADFNGGRVGSSSFGFTTGPDVRPGDWYCAVAN 62
           R GDW C  C + N+  R  C RC +PR   +     +S +        R GDW C    
Sbjct: 5   REGDWECLGCRNRNYAFRSFCNRCKQPRLIMDNNTSPNSKW------LPRIGDWIC--TG 64

Query: 63  CGAHNFASRSICFKCGASKDDASPASAAAYDGDF-TRMRGFNFGAAS-NRPG-------- 121
           C  +N+ASR  C KCG SK+ A+ ++ A       T +  F  G  S ++PG        
Sbjct: 65  CTNNNYASREKCKKCGQSKEVAALSALAIPGASLQTHLHYFTRGPESHDQPGSLLAFSNA 124

[Close]
BLAST of CmaCh05G003960 vs. TAIR10
Match: AT1G48570.1 (AT1G48570.1 zinc finger (Ran-binding) family protein)

HSP 1 Score: 47.0 bits (110), Expect = 9.8e-06
Identity = 31/100 (31.00%), Postives = 38/100 (38.00%), Query Frame = 1 

Query: 3   RPGDWNCRSCHHLNFQRRESCQRCGEPRADFNGGRVGSSSFGFTTGPDVRPGDWYCAVAN 62
           + GDW C  C  LNF R +SC +C            G          +++ GDW C    
Sbjct: 336 KEGDWLCPECSFLNFTRNQSCLKCKAK---------GPKKTSMVNIVEMKKGDWNC--TG 395

Query: 63  CGAHNFASRSICFKCGAS--KDDASPASAAAYDGDFTRMR 101
           CG  NFAS   C +C     K  A P        DF   R
Sbjct: 396 CGYMNFASNKQCRECREQRHKTLAEPGDWECPSCDFVNFR 424

[Close]
BLAST of CmaCh05G003960 vs. NCBI nr
Match: gi|449441928|ref|XP_004138734.1| (PREDICTED: uncharacterized RNA-binding protein C17H9.04c [Cucumis sativus])

HSP 1 Score: 229.2 bits (583), Expect = 3.9e-57
Identity = 105/128 (82.03%), Postives = 111/128 (86.72%), Query Frame = 1 

Query: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFNGGRVG------SSSFGFTTGPDVRPG 60
           MSRPGDWNCRSC+HLNFQRR+SCQRCG+PRADF GG  G      SSSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 60

Query: 61  DWYCAVANCGAHNFASRSICFKCGASKDDASPASAAAYDGDFTRMRGFNFGAASNRPGWK 120
           DWYC VANCGAHNFASRSICFKCGA+KD+    SAAAYDGD  RMRGFNFG ASNRPGWK
Sbjct: 61  DWYCTVANCGAHNFASRSICFKCGATKDE---TSAAAYDGDLPRMRGFNFGGASNRPGWK 120

Query: 121 SGDWICSR 123
           SGDWIC+R
Sbjct: 121 SGDWICAR 125

[Close]
BLAST of CmaCh05G003960 vs. NCBI nr
Match: gi|700207806|gb|KGN62925.1| (hypothetical protein Csa_2G380050 [Cucumis sativus])

HSP 1 Score: 229.2 bits (583), Expect = 3.9e-57
Identity = 105/128 (82.03%), Postives = 111/128 (86.72%), Query Frame = 1 

Query: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFNGGRVG------SSSFGFTTGPDVRPG 60
           MSRPGDWNCRSC+HLNFQRR+SCQRCG+PRADF GG  G      SSSFGFTTGPDVRPG
Sbjct: 81  MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 140

Query: 61  DWYCAVANCGAHNFASRSICFKCGASKDDASPASAAAYDGDFTRMRGFNFGAASNRPGWK 120
           DWYC VANCGAHNFASRSICFKCGA+KD+    SAAAYDGD  RMRGFNFG ASNRPGWK
Sbjct: 141 DWYCTVANCGAHNFASRSICFKCGATKDE---TSAAAYDGDLPRMRGFNFGGASNRPGWK 200

Query: 121 SGDWICSR 123
           SGDWIC+R
Sbjct: 201 SGDWICAR 205

[Close]
BLAST of CmaCh05G003960 vs. NCBI nr
Match: gi|593279185|ref|XP_007137042.1| (hypothetical protein PHAVU_009G094900g [Phaseolus vulgaris])

HSP 1 Score: 201.8 bits (512), Expect = 6.7e-49
Identity = 96/127 (75.59%), Postives = 104/127 (81.89%), Query Frame = 1 

Query: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPRA--DFNGG--RVGSSSFGFTTGPDVRPGDW 60
           MSRPGDWNCR+C+HLNFQRRESCQRCGEPR+  D+ GG    GSSSFGFTTGPDVRPGDW
Sbjct: 1   MSRPGDWNCRTCNHLNFQRRESCQRCGEPRSGGDYGGGFGGRGSSSFGFTTGPDVRPGDW 60

Query: 61  YCAVANCGAHNFASRSICFKCGASKDDASPASAAAYDGDFTRMRGFNFGAASN-RPGWKS 120
           YC V NCGAHNFASRS CFKCG SK+D+S  S   YD D TRMR F FG  S+ RPGWKS
Sbjct: 61  YCTVGNCGAHNFASRSSCFKCGVSKEDSSTGS---YDVDITRMRPFGFGGGSSARPGWKS 120

Query: 121 GDWICSR 123
           GDWIC+R
Sbjct: 121 GDWICTR 124

[Close]
BLAST of CmaCh05G003960 vs. NCBI nr
Match: gi|950969071|ref|XP_014499728.1| (PREDICTED: transcription initiation factor TFIID subunit 15-like [Vigna radiata var. radiata])

HSP 1 Score: 200.7 bits (509), Expect = 1.5e-48
Identity = 95/127 (74.80%), Postives = 105/127 (82.68%), Query Frame = 1 

Query: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPRA--DFNG--GRVGSSSFGFTTGPDVRPGDW 60
           MSRPGDWNCR+C+HLNFQRRESCQRCGEPR+  D+ G  G  GSSSFGFTTGPDVRPGDW
Sbjct: 1   MSRPGDWNCRTCNHLNFQRRESCQRCGEPRSAGDYGGAFGGRGSSSFGFTTGPDVRPGDW 60

Query: 61  YCAVANCGAHNFASRSICFKCGASKDDASPASAAAYDGDFTRMRGFNFGAASN-RPGWKS 120
           YC V NCGAHNFASRS CFKCG SK+D+S  S   YD D TRMR + FG+ S+ RPGWKS
Sbjct: 61  YCTVGNCGAHNFASRSSCFKCGVSKEDSSTGS---YDLDITRMRPYGFGSGSSARPGWKS 120

Query: 121 GDWICSR 123
           GDWIC+R
Sbjct: 121 GDWICTR 124

[Close]
BLAST of CmaCh05G003960 vs. NCBI nr
Match: gi|920698739|gb|KOM41964.1| (hypothetical protein LR48_Vigan04g216200 [Vigna angularis])

HSP 1 Score: 200.7 bits (509), Expect = 1.5e-48
Identity = 95/127 (74.80%), Postives = 104/127 (81.89%), Query Frame = 1 

Query: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPRA--DFNG--GRVGSSSFGFTTGPDVRPGDW 60
           MSRPGDWNCR+C+HLNFQRRESCQRCGEPR+  D+ G  G  GSSSFGFTTGPDVRPGDW
Sbjct: 1   MSRPGDWNCRTCNHLNFQRRESCQRCGEPRSGGDYGGAFGGRGSSSFGFTTGPDVRPGDW 60

Query: 61  YCAVANCGAHNFASRSICFKCGASKDDASPASAAAYDGDFTRMRGFNF-GAASNRPGWKS 120
           YC V NCGAHNFASRS CFKCG SK+D+S  S   YD D TRMR + F G +S RPGWKS
Sbjct: 61  YCTVGNCGAHNFASRSSCFKCGVSKEDSSTGS---YDVDITRMRPYGFGGGSSTRPGWKS 120

Query: 121 GDWICSR 123
           GDWIC+R
Sbjct: 121 GDWICTR 124

The following BLAST results are available for this feature:
BLAST of CmaCh05G003960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh05G003960 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLW7_CUCSA2.7e-5782.03Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380050 PE=4 SV=1[more]
V7AXS5_PHAVU4.7e-4975.59Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G094900g PE=4 SV=1[more]
A0A0L9UHF7_PHAAN1.0e-4874.80Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g216200 PE=4 SV=1[more]
A0A0S3RC49_PHAAN1.0e-4874.80Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G083200 PE=... [more]
I1JUE6_SOYBN1.2e-4771.76Uncharacterized protein OS=Glycine max GN=GLYMA_04G068400 PE=4 SV=1[more]
BLAST of CmaCh05G003960 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G25490.12.1e-4058.87 Ran BP2/NZF zinc finger-like superfamily protein[more]
AT3G15680.13.0e-3958.27 Ran BP2/NZF zinc finger-like superfamily protein[more]
AT2G26695.13.0e-2342.37 Ran BP2/NZF zinc finger-like superfamily protein[more]
AT2G17975.11.2e-1132.85 zinc finger (Ran-binding) family protein[more]
AT1G48570.19.8e-0631.00 zinc finger (Ran-binding) family protein[more]
BLAST of CmaCh05G003960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449441928|ref|XP_004138734.1|3.9e-5782.03PREDICTED: uncharacterized RNA-binding protein C17H9.04c [Cucumis sativus][more]
gi|700207806|gb|KGN62925.1|3.9e-5782.03hypothetical protein Csa_2G380050 [Cucumis sativus][more]
gi|593279185|ref|XP_007137042.1|6.7e-4975.59hypothetical protein PHAVU_009G094900g [Phaseolus vulgaris][more]
gi|950969071|ref|XP_014499728.1|1.5e-4874.80PREDICTED: transcription initiation factor TFIID subunit 15-like [Vigna radiata ... [more]
gi|920698739|gb|KOM41964.1|1.5e-4874.80hypothetical protein LR48_Vigan04g216200 [Vigna angularis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001876Znf_RanBP2
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh05G003960.1CmaCh05G003960.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001876Zinc finger, RanBP2-typeGENE3DG3DSA:4.10.1060.10coord: 48..83
score: 1.2E-15coord: 3..31
score: 7.4
IPR001876Zinc finger, RanBP2-typePFAMPF00641zf-RanBPcoord: 52..81
score: 3.1E-6coord: 3..30
score: 9.
IPR001876Zinc finger, RanBP2-typeSMARTSM00547zf_4coord: 54..80
score: 4.4E-7coord: 5..29
score: 2.
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 56..77
score: -coord: 7..26
scor
IPR001876Zinc finger, RanBP2-typePROFILEPS50199ZF_RANBP2_2coord: 52..83
score: 10.015coord: 3..32
score: 9
IPR001876Zinc finger, RanBP2-typeunknownSSF90209Ran binding protein zinc finger-likecoord: 48..83
score: 2.82E-11coord: 2..32
score: 9.7
NoneNo IPR availableunknownCoilCoilcoord: 122..122
scor
NoneNo IPR availablePANTHERPTHR23111ZINC FINGER PROTEINcoord: 1..122
score: 4.2
NoneNo IPR availablePANTHERPTHR23111:SF21SUBFAMILY NOT NAMEDcoord: 1..122
score: 4.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh05G003960Cucsa.162240Cucumber (Gy14) v1cgycmaB0462
CmaCh05G003960Cla022308Watermelon (97103) v1cmawmB753
CmaCh05G003960Csa2G380050Cucumber (Chinese Long) v2cmacuB792
CmaCh05G003960MELO3C011238Melon (DHL92) v3.5.1cmameB725
CmaCh05G003960ClCG08G013170Watermelon (Charleston Gray)cmawcgB712
CmaCh05G003960CSPI02G23260Wild cucumber (PI 183967)cmacpiB801
CmaCh05G003960CmoCh05G004090Cucurbita moschata (Rifu)cmacmoB786
CmaCh05G003960CmoCh12G002770Cucurbita moschata (Rifu)cmacmoB770
CmaCh05G003960Cp4.1LG11g03460Cucurbita pepo (Zucchini)cmacpeB766
CmaCh05G003960Cp4.1LG07g02810Cucurbita pepo (Zucchini)cmacpeB797
CmaCh05G003960MELO3C011238.2Melon (DHL92) v3.6.1cmamedB818
CmaCh05G003960CsaV3_2G031890Cucumber (Chinese Long) v3cmacucB0935
CmaCh05G003960Cla97C08G156500Watermelon (97103) v2cmawmbB832
CmaCh05G003960Cla97C07G139600Watermelon (97103) v2cmawmbB829
CmaCh05G003960Bhi04G000803Wax gourdcmawgoB0939
CmaCh05G003960CsGy2G023050Cucumber (Gy14) v2cgybcmaB258
CmaCh05G003960Carg03916Silver-seed gourdcarcmaB1357
CmaCh05G003960Carg09326Silver-seed gourdcarcmaB0189
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh05G003960CmaCh12G003270Cucurbita maxima (Rimu)cmacmaB199
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh05G003960Cucumber (Chinese Long) v2cmacuB797
CmaCh05G003960Melon (DHL92) v3.5.1cmameB733
CmaCh05G003960Watermelon (Charleston Gray)cmawcgB700
CmaCh05G003960Watermelon (97103) v1cmawmB756
CmaCh05G003960Cucurbita pepo (Zucchini)cmacpeB778
CmaCh05G003960Bottle gourd (USVL1VR-Ls)cmalsiB727
CmaCh05G003960Bottle gourd (USVL1VR-Ls)cmalsiB739
CmaCh05G003960Cucumber (Gy14) v2cgybcmaB422
CmaCh05G003960Melon (DHL92) v3.6.1cmamedB828
CmaCh05G003960Cucumber (Chinese Long) v3cmacucB0940
CmaCh05G003960Watermelon (97103) v2cmawmbB818
CmaCh05G003960Wax gourdcmawgoB0964
CmaCh05G003960Cucurbita maxima (Rimu)cmacmaB434
CmaCh05G003960Cucumber (Gy14) v1cgycmaB0874
CmaCh05G003960Cucurbita moschata (Rifu)cmacmoB783
CmaCh05G003960Wild cucumber (PI 183967)cmacpiB806