Carg09326 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg09326
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Zinc finger (Ran-binding) family protein
Location	Cucurbita_argyrosperma_scaffold_018 : 624646 .. 625762 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACGTGATCAGGCCATTAAAACCGAACCGCCGCCGCATCAACTTCAGGCAAAAGGTAAGCTTTCCGGTTAATTAGAGTTCATTTTGTTTTTTTTTGGCGTTAAGGGTTGGGACTAAATTTGGAGGGGAATAAAAAGAAGCAGGATGAGCAGGCCGGGGGATTGGAATTGTAGGTCTTGCCACCATCTCAACTTCCAACGACGGGAGTCCTGTCAGCGTTGTGGTGAGCCTAGGGCCGACTTCAGCGGCGGAAGAGTTGGTTCCTCGTCCTTTGGTTTCACTACCGGCCCCGACGTCCGTCCTGGGGATTGGTACTGCGCCGTCGCCAACTGCGGCGCTCATAACTTCGCTAGCCGCTCTATCTGCTTCAAGTGCGGCGCTTCTAAAGATGACGCTTCCCCTGCCGCCGCCGCCGCCGCCGCCGCTTACGACGGCGATTTTACTAGAATGAGAGGCTTTAACTTCGGCGCTGCCTCCAACCGCCCTGGATGGAAATCTGGTGATTGGATCTGTTCCAGGTAGGGTTTCCAATTTTTCTCTAAATTCCATTTTCATCCCCACCACTTTCAATATTTTCAAATTTAGTCCATTTTTAATTATGATTTTAATTTTTTCATCCCATATCTACTAAATTAATCTATAAAAAAAAAGTCAAAAATTAATGTTACAGATCAAATTGCAACGAGCATAACTTTGCCAACAGAAGAGAATGCTTCAGATGTAATGCACCTAGAGATTCAAACAACACGTCTCCATACTCGTACTCGTAGAGGTAATTAATTAATTTCTAGAAACAAAATATCATATTTATAAATGGATCCCTAAACTCTTTCTCGGGTTTAATTAGTTATTAATATTATTATTTTGGGAATATTTTGCAATTTACAGGTGGTAGCAATGGAAGGATCAAATTCTAGCTAGAAAGAAGAGAGTTTCCAATCAGAACGTCGTCGTTTTGTTTTCTTTATTTTCCAGTTTCAAAAGTGATTTAAGGGTGGATTTATGCATGCATGCAGGAAAATACTTCGTATCCAATTTTCTAATTTATATTATATTAATCCGTAACTTTCACTTTATGTTATGTGCTTACCTCGAATTAATTTTCTAATAATAAATC

mRNA sequence

AAACGTGATCAGGCCATTAAAACCGAACCGCCGCCGCATCAACTTCAGGCAAAAGGATGAGCAGGCCGGGGGATTGGAATTGTAGGTCTTGCCACCATCTCAACTTCCAACGACGGGAGTCCTGTCAGCGTTGTGGTGAGCCTAGGGCCGACTTCAGCGGCGGAAGAGTTGGTTCCTCGTCCTTTGGTTTCACTACCGGCCCCGACGTCCGTCCTGGGGATTGGTACTGCGCCGTCGCCAACTGCGGCGCTCATAACTTCGCTAGCCGCTCTATCTGCTTCAAGTGCGGCGCTTCTAAAGATGACGCTTCCCCTGCCGCCGCCGCCGCCGCCGCCGCTTACGACGGCGATTTTACTAGAATGAGAGGCTTTAACTTCGGCGCTGCCTCCAACCGCCCTGGATGGAAATCTGGTGATTGGATCTGTTCCAGATCAAATTGCAACGAGCATAACTTTGCCAACAGAAGAGAATGCTTCAGATGTAATGCACCTAGAGATTCAAACAACACGTCTCCATACTCGTACTCGTAGAGGTGGTAGCAATGGAAGGATCAAATTCTAGCTAGAAAGAAGAGAGTTTCCAATCAGAACGTCGTCGTTTTGTTTTCTTTATTTTCCAGTTTCAAAAGTGATTTAAGGGTGGATTTATGCATGCATGCAGGAAAATACTTCGTATCCAATTTTCTAATTTATATTATATTAATCCGTAACTTTCACTTTATGTTATGTGCTTACCTCGAATTAATTTTCTAATAATAAATC

Coding sequence (CDS)

ATGAGCAGGCCGGGGGATTGGAATTGTAGGTCTTGCCACCATCTCAACTTCCAACGACGGGAGTCCTGTCAGCGTTGTGGTGAGCCTAGGGCCGACTTCAGCGGCGGAAGAGTTGGTTCCTCGTCCTTTGGTTTCACTACCGGCCCCGACGTCCGTCCTGGGGATTGGTACTGCGCCGTCGCCAACTGCGGCGCTCATAACTTCGCTAGCCGCTCTATCTGCTTCAAGTGCGGCGCTTCTAAAGATGACGCTTCCCCTGCCGCCGCCGCCGCCGCCGCCGCTTACGACGGCGATTTTACTAGAATGAGAGGCTTTAACTTCGGCGCTGCCTCCAACCGCCCTGGATGGAAATCTGGTGATTGGATCTGTTCCAGATCAAATTGCAACGAGCATAACTTTGCCAACAGAAGAGAATGCTTCAGATGTAATGCACCTAGAGATTCAAACAACACGTCTCCATACTCGTACTCGTAG

Protein sequence

MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAYDGDFTRMRGFNFGAASNRPGWKSGDWICSRSNCNEHNFANRRECFRCNAPRDSNNTSPYSYS

Homology

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BLAST of Carg09326 vs. NCBI nr
Match: XP_022962203.1 (uncharacterized RNA-binding protein C17H9.04c-like isoform X1 [Cucurbita moschata] >XP_022962204.1 uncharacterized RNA-binding protein C17H9.04c-like isoform X1 [Cucurbita moschata] >XP_022962206.1 uncharacterized RNA-binding protein C17H9.04c-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 328.9 bits (842), Expect = 9.1e-87
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAV 60
           MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAV
Sbjct: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAV 60

Query: 61  ANCGAHNFASRSICFKCGASKDDASPXXXXXXXXYDGDFTRMRGFNFGAASNRPGWKSGD 120
           ANCGAHNFASRSICFKCGASKDDASPXXXXXXXXYDGDFTRMRGFNFGAASNRPGWKSGD
Sbjct: 61  ANCGAHNFASRSICFKCGASKDDASPXXXXXXXXYDGDFTRMRGFNFGAASNRPGWKSGD 120

Query: 121 WICSRSNCNEHNFANRRECFRCNAPRDSNNTSPYSYS 158
           WICSRSNCNEHNFANRRECFRCNAPRDSNNTSPYSYS
Sbjct: 121 WICSRSNCNEHNFANRRECFRCNAPRDSNNTSPYSYS 157

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BLAST of Carg09326 vs. NCBI nr
Match: XP_023547066.1 (zinc finger Ran-binding domain-containing protein 2-like [Cucurbita pepo subsp. pepo] >XP_023547067.1 zinc finger Ran-binding domain-containing protein 2-like [Cucurbita pepo subsp. pepo] >XP_023547068.1 zinc finger Ran-binding domain-containing protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 324.7 bits (831), Expect = 1.7e-85
Identity = 149/157 (94.90%), Postives = 149/157 (94.90%), Query Frame = 0


Query: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAV 60
           MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAV
Sbjct: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAV 60

Query: 61  ANCGAHNFASRSICFKCGASKDDASPXXXXXXXXYDGDFTRMRGFNFGAASNRPGWKSGD 120
           ANCGAHNFASRSICFKCGASKDDASP        YDGDFTRMRGFNFGAASNRPGWKSGD
Sbjct: 61  ANCGAHNFASRSICFKCGASKDDASP-----AAAYDGDFTRMRGFNFGAASNRPGWKSGD 120

Query: 121 WICSRSNCNEHNFANRRECFRCNAPRDSNNTSPYSYS 158
           WICSRSNCNEHNFANRRECFRCNAPRDSNNTSPYSYS
Sbjct: 121 WICSRSNCNEHNFANRRECFRCNAPRDSNNTSPYSYS 152

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BLAST of Carg09326 vs. NCBI nr
Match: XP_022996813.1 (zinc finger Ran-binding domain-containing protein 2-like [Cucurbita maxima] >XP_022996814.1 zinc finger Ran-binding domain-containing protein 2-like [Cucurbita maxima] >XP_022996815.1 zinc finger Ran-binding domain-containing protein 2-like [Cucurbita maxima])

HSP 1 Score: 317.8 bits (813), Expect = 2.1e-83
Identity = 146/157 (92.99%), Postives = 148/157 (94.27%), Query Frame = 0


Query: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAV 60
           MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADF+GGRVGSSSFGFTTGPDVRPGDWYCAV
Sbjct: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFNGGRVGSSSFGFTTGPDVRPGDWYCAV 60

Query: 61  ANCGAHNFASRSICFKCGASKDDASPXXXXXXXXYDGDFTRMRGFNFGAASNRPGWKSGD 120
           ANCGAHNFASRSICFKCGASKDDASP        YDGDFTRMRGFNFGAASNRPGWKSGD
Sbjct: 61  ANCGAHNFASRSICFKCGASKDDASP---ASAAAYDGDFTRMRGFNFGAASNRPGWKSGD 120

Query: 121 WICSRSNCNEHNFANRRECFRCNAPRDSNNTSPYSYS 158
           WICSRS+CNEHNFANRRECFRCNA RDSNNTSPYSYS
Sbjct: 121 WICSRSDCNEHNFANRRECFRCNALRDSNNTSPYSYS 154

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BLAST of Carg09326 vs. NCBI nr
Match: XP_022131903.1 (uncharacterized RNA-binding protein C17H9.04c-like [Momordica charantia] >XP_022131904.1 uncharacterized RNA-binding protein C17H9.04c-like [Momordica charantia])

HSP 1 Score: 284.3 bits (726), Expect = 2.6e-73
Identity = 131/161 (81.37%), Postives = 137/161 (85.09%), Query Frame = 0


Query: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGG------RVGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSC+HLNFQRR+SC RCGEPRADF GG      RVGSSSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCHRCGEPRADFGGGGYGGAARVGSSSFGFTTGPDVRPG 60

Query: 61  DWYCAVANCGAHNFASRSICFKCGASKDDASPXXXXXXXXYDGDFTRMRGFNFGAASNRP 120
           DWYCA+ NCGAHNFASRSICFKCGA KDDAS         YDGD  RMRGFNFG ASNRP
Sbjct: 61  DWYCAIGNCGAHNFASRSICFKCGACKDDAS------AGAYDGDIPRMRGFNFGGASNRP 120

Query: 121 GWKSGDWICSRSNCNEHNFANRRECFRCNAPRDSNNTSPYS 156
           GWKSGDWIC+RS+CNEHNFA+RRECFRCNAPRDSN  SPYS
Sbjct: 121 GWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNGNSPYS 155

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BLAST of Carg09326 vs. NCBI nr
Match: XP_023538151.1 (uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 282.3 bits (721), Expect = 9.8e-73
Identity = 130/160 (81.25%), Postives = 140/160 (87.50%), Query Frame = 0


Query: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADF-----SGGRVGSSSFGFTTGPDVRPGD 60
           MSRPGDWNCRSC+HLNFQRR+SC RCG+PRADF      GGR GSSSFGFTTGPDVRPGD
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAAYGGGRGGSSSFGFTTGPDVRPGD 60

Query: 61  WYCAVANCGAHNFASRSICFKCGASKDDASPXXXXXXXXYDGDFTRMRGFNFGAASNRPG 120
           WYCAVANCGAHNFASRSICFKCGASKD+AS         YDGD +R+RGFNFG ASNRPG
Sbjct: 61  WYCAVANCGAHNFASRSICFKCGASKDEAS------AAAYDGDLSRIRGFNFGGASNRPG 120

Query: 121 WKSGDWICSRSNCNEHNFANRRECFRCNAPRDSNNTSPYS 156
           WKSGDWIC+RS+CNEHNFA+RRECFRCNAPRDSN+ SPYS
Sbjct: 121 WKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 154

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BLAST of Carg09326 vs. TAIR10
Match: AT5G25490.1 (Ran BP2/NZF zinc finger-like superfamily protein)

HSP 1 Score: 197.2 bits (500), Expect = 7.5e-51
Identity = 99/170 (58.24%), Postives = 113/170 (66.47%), Query Frame = 0


Query: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPR--------ADFSGGRVGSSSFGFTTGPDVR 60
           M+RPGDWNCR C HLNFQRR+SCQRC EPR            GGR  SSSFGF TGPDVR
Sbjct: 1   MNRPGDWNCRLCSHLNFQRRDSCQRCREPRPGGISTDLLSGFGGRPVSSSFGFNTGPDVR 60

Query: 61  PGDWYCAVANCGAHNFASRSICFKCGASKDDASPXXXXXXXXY-DGDFTRMRG-FNFGAA 120
           PGDWYC + +CG HNFA+RS CFKCGA+KD+ S         + D +    RG F FG +
Sbjct: 61  PGDWYCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMDMNVGPRRGLFGFGGS 120

Query: 121 SN------RPGWKSGDWICSRSNCNEHNFANRRECFRCNAPRDSNNTSPY 155
           S+      R  WKSGDWIC RS CNEHNFA+R ECFRCNAP++     PY
Sbjct: 121 SSGGGGTGRSPWKSGDWICPRSGCNEHNFASRSECFRCNAPKELATEPPY 170

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BLAST of Carg09326 vs. TAIR10
Match: AT3G15680.1 (Ran BP2/NZF zinc finger-like superfamily protein)

HSP 1 Score: 196.4 bits (498), Expect = 1.3e-50
Identity = 106/167 (63.47%), Postives = 114/167 (68.26%), Query Frame = 0


Query: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPRA--------DFS--GGRVGSSSFGFTTGPD 60
           MSRPGDWNCRSC HLNFQRR+SCQRCG+ R+        DF   GGR   S+FGFTTG D
Sbjct: 1   MSRPGDWNCRSCSHLNFQRRDSCQRCGDSRSGPGGVGGLDFGNFGGR-AMSAFGFTTGSD 60

Query: 61  VRPGDWYCAVANCGAHNFASRSICFKCGASKDDAS----PXXXXXXXXYDGDFTRMRGFN 120
           VRPGDWYC V NCG HNFASRS CFKCG  KD+       XXXX    +D D  R R   
Sbjct: 61  VRPGDWYCTVGNCGTHNFASRSTCFKCGTFKDETGAXXXXXXXXGPAMFDADIMRSRVPG 120

Query: 121 FGAASNRPGWKSGDWICSRSNCNEHNFANRRECFRCNAPRD-SNNTS 153
            G    R  WKSGDWIC+R  CNEHNFA+R ECFRCNAPRD SN TS
Sbjct: 121 NG---GRSSWKSGDWICTRIGCNEHNFASRMECFRCNAPRDFSNRTS 163

[Close]

BLAST of Carg09326 vs. TAIR10
Match: AT2G26695.1 (Ran BP2/NZF zinc finger-like superfamily protein)

HSP 1 Score: 130.2 bits (326), Expect = 1.1e-30
Identity = 62/143 (43.36%), Postives = 85/143 (59.44%), Query Frame = 0


Query: 5   GDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAVANCG 64
           GDW C +C H NF++RESCQ+CG P+  F G  V +  +  T   +V  GDWYC   NCG
Sbjct: 6   GDWLCGACQHANFKKRESCQKCGYPK--FGGVDVSTYLYNRT---EVMAGDWYCGALNCG 65

Query: 65  AHNFASRSICFKCGASKDDASPXXXXXXXXYDGDFTRMRGFNFGAASNRPGWKSGDWICS 124
           +HN+ASR+ C++CG  K + +         Y G   +M  +    A+  PGWK+GDW+C 
Sbjct: 66  SHNYASRTSCYRCGMIKVEYT-------EQYYG--AQMVAYGNDGAACPPGWKTGDWVCP 125

Query: 125 RSNCNEHNFANRRECFRCNAPRD 148
           R  C  HN+A+R ECF+C   RD
Sbjct: 126 RVGCGVHNYASRAECFKCKTTRD 134

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BLAST of Carg09326 vs. TAIR10
Match: AT2G17975.1 (zinc finger (Ran-binding) family protein)

HSP 1 Score: 51.2 bits (121), Expect = 6.7e-07
Identity = 39/135 (28.89%), Postives = 51/135 (37.78%), Query Frame = 0


Query: 52  RPGDWYCAVANCGAHNFASRSICFKCG--ASKDDASPXXXXXXXXYDGDFTRMR------ 111
           R GDW C    CG HN++SR  C KC   A     +         ++ D  R+       
Sbjct: 127 RSGDWIC---RCGFHNYSSRIQCKKCNEIAPLALGTKRLASEALAHEWDSKRLNQGYTSM 186

Query: 112 -----------GFNFGAASN------------RPG--------WKSGDWICSRSNCNEHN 148
                      G + G  SN             P         W+ GDW+C  +NC  HN
Sbjct: 187 QTQSAIYASFPGMSLGRVSNWQLPLPFLQQHSTPALLGMGVKQWRDGDWMC--TNCKNHN 246

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BLAST of Carg09326 vs. Swiss-Prot
Match: sp|O13801|YE04_SCHPO (Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC17H9.04c PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.6e-12
Identity = 65/256 (25.39%), Postives = 75/256 (29.30%), Query Frame = 0


Query: 3   RPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSF------------------- 62
           RPGDWNC  C   NFQRR SC RC  P         GS++F                   
Sbjct: 343 RPGDWNCPMCGFSNFQRRTSCFRCSFPGPTHVSAATGSNTFSPDFPYGNSYGNGSSHFIA 402

Query: 63  ----------------------------------GFTTGPDVRPGDWYCAVANCGAHNFA 122
                                              F      R GDW C    CG HNFA
Sbjct: 403 NYGGSVHHSNENTMQSDLQHQNGNNAVNHHHSSRSFGGNVPFRAGDWKCGSEGCGYHNFA 462

Query: 123 SRSICFKCGASKDDASPXXXXXXXXYDGDF------------------------------ 156
               C +CGAS+  A+          +G +                              
Sbjct: 463 KNVCCLRCGASRATAAVVADHASGPVNGSYSHNSYSHIPPVMSTSPPNHSVYPYSQLSIN 522

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BLAST of Carg09326 vs. Swiss-Prot
Match: sp|Q5ZLX5|ZRAB2_CHICK (Zinc finger Ran-binding domain-containing protein 2 OS=Gallus gallus OX=9031 GN=ZRANB2 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 6.0e-05
Identity = 31/84 (36.90%), Postives = 38/84 (45.24%), Query Frame = 0


Query: 5  GDWNC--RSCHHLNFQRRESCQRCG-EPRADFSGGRVGSSSFGFTTGPDVR----PGDWY 64
          GDW C  + C ++NF RR SC RCG E   +    + G +  G T     R      DW 
Sbjct: 11 GDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGLFSANDWQ 70

Query: 65 CAVANCGAHNFASRSICFKCGASK 82
          C    CG  N+A RS C  C   K
Sbjct: 71 C--KTCGNVNWARRSECNMCNTPK 92

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BLAST of Carg09326 vs. Swiss-Prot
Match: sp|O95218|ZRAB2_HUMAN (Zinc finger Ran-binding domain-containing protein 2 OS=Homo sapiens OX=9606 GN=ZRANB2 PE=1 SV=2)

HSP 1 Score: 46.6 bits (109), Expect = 3.0e-04
Identity = 30/84 (35.71%), Postives = 37/84 (44.05%), Query Frame = 0


Query: 5  GDWNC--RSCHHLNFQRRESCQRCG-EPRADFSGGRVGSSSFGFTTGPDVR----PGDWY 64
          GDW C  + C ++NF RR SC RCG E   +    + G +  G T     R      DW 
Sbjct: 11 GDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGLFSANDWQ 70

Query: 65 CAVANCGAHNFASRSICFKCGASK 82
          C    C   N+A RS C  C   K
Sbjct: 71 C--KTCSNVNWARRSECNMCNTPK 92

[Close]

BLAST of Carg09326 vs. Swiss-Prot
Match: sp|Q9R020|ZRAB2_MOUSE (Zinc finger Ran-binding domain-containing protein 2 OS=Mus musculus OX=10090 GN=Zranb2 PE=1 SV=2)

HSP 1 Score: 46.6 bits (109), Expect = 3.0e-04
Identity = 30/84 (35.71%), Postives = 37/84 (44.05%), Query Frame = 0


Query: 5  GDWNC--RSCHHLNFQRRESCQRCG-EPRADFSGGRVGSSSFGFTTGPDVR----PGDWY 64
          GDW C  + C ++NF RR SC RCG E   +    + G +  G T     R      DW 
Sbjct: 11 GDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGLFSANDWQ 70

Query: 65 CAVANCGAHNFASRSICFKCGASK 82
          C    C   N+A RS C  C   K
Sbjct: 71 C--KTCSNVNWARRSECNMCNTPK 92

[Close]

BLAST of Carg09326 vs. Swiss-Prot
Match: sp|Q19QU3|ZRAB2_PIG (Zinc finger Ran-binding domain-containing protein 2 OS=Sus scrofa OX=9823 GN=ZRANB2 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.0e-04
Identity = 30/84 (35.71%), Postives = 37/84 (44.05%), Query Frame = 0


Query: 5  GDWNC--RSCHHLNFQRRESCQRCG-EPRADFSGGRVGSSSFGFTTGPDVR----PGDWY 64
          GDW C  + C ++NF RR SC RCG E   +    + G +  G T     R      DW 
Sbjct: 11 GDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGLFSANDWQ 70

Query: 65 CAVANCGAHNFASRSICFKCGASK 82
          C    C   N+A RS C  C   K
Sbjct: 71 C--KTCSNVNWARRSECNMCNTPK 92

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BLAST of Carg09326 vs. TrEMBL
Match: tr|A0A1S3BBL4|A0A1S3BBL4_CUCME (uncharacterized RNA-binding protein C17H9.04c OS=Cucumis melo OX=3656 GN=LOC103488288 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 1.8e-70
Identity = 126/161 (78.26%), Postives = 135/161 (83.85%), Query Frame = 0


Query: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGG------RVGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSC+HLNFQRR+SCQRCG+PRADF GG          SSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSXXXXXXXXXSSFGFTTGPDVRPG 60

Query: 61  DWYCAVANCGAHNFASRSICFKCGASKDDASPXXXXXXXXYDGDFTRMRGFNFGAASNRP 120
           DWYC VANCGAHNFASRSICFKCGA+KD+ S         YDGD  RMRGFNFG ASNRP
Sbjct: 61  DWYCTVANCGAHNFASRSICFKCGATKDETS------AAAYDGDLPRMRGFNFGGASNRP 120

Query: 121 GWKSGDWICSRSNCNEHNFANRRECFRCNAPRDSNNTSPYS 156
           GWKSGDWIC+RS+CNEHNFA+RRECFRCNAPRDSN+ SPYS
Sbjct: 121 GWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 155

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BLAST of Carg09326 vs. TrEMBL
Match: tr|A0A0A0LLW7|A0A0A0LLW7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G380050 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 1.8e-70
Identity = 126/161 (78.26%), Postives = 135/161 (83.85%), Query Frame = 0


Query: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGG------RVGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSC+HLNFQRR+SCQRCG+PRADF GG          SSFGFTTGPDVRPG
Sbjct: 81  MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSXXXXXXXXXSSFGFTTGPDVRPG 140

Query: 61  DWYCAVANCGAHNFASRSICFKCGASKDDASPXXXXXXXXYDGDFTRMRGFNFGAASNRP 120
           DWYC VANCGAHNFASRSICFKCGA+KD+ S         YDGD  RMRGFNFG ASNRP
Sbjct: 141 DWYCTVANCGAHNFASRSICFKCGATKDETS------AAAYDGDLPRMRGFNFGGASNRP 200

Query: 121 GWKSGDWICSRSNCNEHNFANRRECFRCNAPRDSNNTSPYS 156
           GWKSGDWIC+RS+CNEHNFA+RRECFRCNAPRDSN+ SPYS
Sbjct: 201 GWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 235

[Close]

BLAST of Carg09326 vs. TrEMBL
Match: tr|A0A1S3U123|A0A1S3U123_VIGRR (transcription initiation factor TFIID subunit 15-like OS=Vigna radiata var. radiata OX=3916 GN=LOC106760812 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.1e-61
Identity = 116/158 (73.42%), Postives = 128/158 (81.01%), Query Frame = 0


Query: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPRA--DFSG--GRVGSSSFGFTTGPDVRPGDW 60
           MSRPGDWNCR+C+HLNFQRRESCQRCGEPR+  D+ G  G  GSSSFGFTTGPDVRPGDW
Sbjct: 1   MSRPGDWNCRTCNHLNFQRRESCQRCGEPRSAGDYGGAFGGRGSSSFGFTTGPDVRPGDW 60

Query: 61  YCAVANCGAHNFASRSICFKCGASKDDASPXXXXXXXXYDGDFTRMRGFNFGAASN-RPG 120
           YC V NCGAHNFASRS CFKCG SK+D+S         YD D TRMR + FG+ S+ RPG
Sbjct: 61  YCTVGNCGAHNFASRSSCFKCGVSKEDSS------TGSYDLDITRMRPYGFGSGSSARPG 120

Query: 121 WKSGDWICSRSNCNEHNFANRRECFRCNAPRDSNNTSP 154
           WKSGDWIC+RS CNEHNFANR EC+RCNAPRDSN+  P
Sbjct: 121 WKSGDWICTRSGCNEHNFANRMECYRCNAPRDSNSGRP 152

[Close]

BLAST of Carg09326 vs. TrEMBL
Match: tr|A0A0L9UHF7|A0A0L9UHF7_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan04g216200 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.1e-61
Identity = 116/158 (73.42%), Postives = 127/158 (80.38%), Query Frame = 0


Query: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPRA--DFSG--GRVGSSSFGFTTGPDVRPGDW 60
           MSRPGDWNCR+C+HLNFQRRESCQRCGEPR+  D+ G  G  GSSSFGFTTGPDVRPGDW
Sbjct: 1   MSRPGDWNCRTCNHLNFQRRESCQRCGEPRSGGDYGGAFGGRGSSSFGFTTGPDVRPGDW 60

Query: 61  YCAVANCGAHNFASRSICFKCGASKDDASPXXXXXXXXYDGDFTRMRGFNF-GAASNRPG 120
           YC V NCGAHNFASRS CFKCG SK+D+S         YD D TRMR + F G +S RPG
Sbjct: 61  YCTVGNCGAHNFASRSSCFKCGVSKEDSS------TGSYDVDITRMRPYGFGGGSSTRPG 120

Query: 121 WKSGDWICSRSNCNEHNFANRRECFRCNAPRDSNNTSP 154
           WKSGDWIC+RS CNEHNFANR EC+RCNAPRDSN+  P
Sbjct: 121 WKSGDWICTRSGCNEHNFANRMECYRCNAPRDSNSGRP 152

[Close]

BLAST of Carg09326 vs. TrEMBL
Match: tr|A0A0S3RC49|A0A0S3RC49_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.02G083200 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.1e-61
Identity = 116/158 (73.42%), Postives = 127/158 (80.38%), Query Frame = 0


Query: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPRA--DFSG--GRVGSSSFGFTTGPDVRPGDW 60
           MSRPGDWNCR+C+HLNFQRRESCQRCGEPR+  D+ G  G  GSSSFGFTTGPDVRPGDW
Sbjct: 1   MSRPGDWNCRTCNHLNFQRRESCQRCGEPRSGGDYGGAFGGRGSSSFGFTTGPDVRPGDW 60

Query: 61  YCAVANCGAHNFASRSICFKCGASKDDASPXXXXXXXXYDGDFTRMRGFNF-GAASNRPG 120
           YC V NCGAHNFASRS CFKCG SK+D+S         YD D TRMR + F G +S RPG
Sbjct: 61  YCTVGNCGAHNFASRSSCFKCGVSKEDSS------TGSYDVDITRMRPYGFGGGSSTRPG 120

Query: 121 WKSGDWICSRSNCNEHNFANRRECFRCNAPRDSNNTSP 154
           WKSGDWIC+RS CNEHNFANR EC+RCNAPRDSN+  P
Sbjct: 121 WKSGDWICTRSGCNEHNFANRMECYRCNAPRDSNSGRP 152

The following BLAST results are available for this feature:

BLAST of Carg09326 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022962203.1	9.1e-87	100.00	uncharacterized RNA-binding protein C17H9.04c-like isoform X1 [Cucurbita moschat...	[more]
XP_023547066.1	1.7e-85	94.90	zinc finger Ran-binding domain-containing protein 2-like [Cucurbita pepo subsp. ...	[more]
XP_022996813.1	2.1e-83	92.99	zinc finger Ran-binding domain-containing protein 2-like [Cucurbita maxima] >XP_...	[more]
XP_022131903.1	2.6e-73	81.37	uncharacterized RNA-binding protein C17H9.04c-like [Momordica charantia] >XP_022...	[more]
XP_023538151.1	9.8e-73	81.25	uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg09326 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G25490.1	7.5e-51	58.24	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT3G15680.1	1.3e-50	63.47	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G26695.1	1.1e-30	43.36	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G17975.1	6.7e-07	28.89	zinc finger (Ran-binding) family protein	[more]

BLAST of Carg09326 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O13801\|YE04_SCHPO	6.6e-12	25.39	Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (stra...	[more]
sp\|Q5ZLX5\|ZRAB2_CHICK	6.0e-05	36.90	Zinc finger Ran-binding domain-containing protein 2 OS=Gallus gallus OX=9031 GN=...	[more]
sp\|O95218\|ZRAB2_HUMAN	3.0e-04	35.71	Zinc finger Ran-binding domain-containing protein 2 OS=Homo sapiens OX=9606 GN=Z...	[more]
sp\|Q9R020\|ZRAB2_MOUSE	3.0e-04	35.71	Zinc finger Ran-binding domain-containing protein 2 OS=Mus musculus OX=10090 GN=...	[more]
sp\|Q19QU3\|ZRAB2_PIG	3.0e-04	35.71	Zinc finger Ran-binding domain-containing protein 2 OS=Sus scrofa OX=9823 GN=ZRA...	[more]

BLAST of Carg09326 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BBL4\|A0A1S3BBL4_CUCME	1.8e-70	78.26	uncharacterized RNA-binding protein C17H9.04c OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
tr\|A0A0A0LLW7\|A0A0A0LLW7_CUCSA	1.8e-70	78.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G380050 PE=4 SV=1	[more]
tr\|A0A1S3U123\|A0A1S3U123_VIGRR	1.1e-61	73.42	transcription initiation factor TFIID subunit 15-like OS=Vigna radiata var. radi...	[more]
tr\|A0A0L9UHF7\|A0A0L9UHF7_PHAAN	1.1e-61	73.42	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan04g216200 PE...	[more]
tr\|A0A0S3RC49\|A0A0S3RC49_PHAAN	1.1e-61	73.42	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.02G...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036443	Znf_RanBP2_sf
IPR001876	Znf_RanBP2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09326-RA	Carg09326-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 119..145 e-value: 2.4E-4 score: 30.5 coord: 5..29 e-value: 2.8E-6 score: 36.8 coord: 54..80 e-value: 4.4E-7 score: 39.5
IPR001876	Zinc finger, RanBP2-type	PFAM	PF00641	zf-RanBP	coord: 52..81 e-value: 4.9E-6 score: 25.6 coord: 3..30 e-value: 0.0015 score: 17.7 coord: 117..146 e-value: 3.9E-8 score: 32.4
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 56..77
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 121..142
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 7..26
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 52..83 score: 10.015
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 3..32 score: 9.857
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 117..148 score: 10.591
None	No IPR available	GENE3D	G3DSA:4.10.1060.10		coord: 1..33 e-value: 5.0E-11 score: 43.6 coord: 108..150 e-value: 1.5E-11 score: 45.3 coord: 44..85 e-value: 7.8E-14 score: 52.6
None	No IPR available	PANTHER	PTHR23111:SF21	SUBFAMILY NOT NAMED	coord: 1..155
None	No IPR available	PANTHER	PTHR23111	ZINC FINGER PROTEIN	coord: 1..155
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	SSF90209	Ran binding protein zinc finger-like	coord: 48..83
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	SSF90209	Ran binding protein zinc finger-like	coord: 111..149
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	SSF90209	Ran binding protein zinc finger-like	coord: 2..32

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg09326	Cla022308	Watermelon (97103) v1	carwmB0133
Carg09326	Csa2G380050	Cucumber (Chinese Long) v2	carcuB0150
Carg09326	MELO3C011238	Melon (DHL92) v3.5.1	carmeB0143
Carg09326	ClCG07G012800	Watermelon (Charleston Gray)	carwcgB0136
Carg09326	ClCG08G013170	Watermelon (Charleston Gray)	carwcgB0137
Carg09326	CSPI02G23260	Wild cucumber (PI 183967)	carcpiB0155
Carg09326	Cucsa.162240	Cucumber (Gy14) v1	carcgyB0171
Carg09326	CmaCh05G003960	Cucurbita maxima (Rimu)	carcmaB0189
Carg09326	CmaCh12G003270	Cucurbita maxima (Rimu)	carcmaB0183
Carg09326	CmoCh12G002770	Cucurbita moschata (Rifu)	carcmoB0192
Carg09326	CmoCh05G004090	Cucurbita moschata (Rifu)	carcmoB0196
Carg09326	Lsi08G011800	Bottle gourd (USVL1VR-Ls)	carlsiB128
Carg09326	Cp4.1LG11g03460	Cucurbita pepo (Zucchini)	carcpeB0199
Carg09326	Cp4.1LG07g02810	Cucurbita pepo (Zucchini)	carcpeB0205
Carg09326	CsGy2G023050	Cucumber (Gy14) v2	carcgybB0148
Carg09326	MELO3C011238.2	Melon (DHL92) v3.6.1	carmedB0147
Carg09326	CsaV3_2G031890	Cucumber (Chinese Long) v3	carcucB0159
Carg09326	Cla97C08G156500	Watermelon (97103) v2	carwmbB0149
Carg09326	Bhi04G000803	Wax gourd	carwgoB0176

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg09326	Carg03916	Silver-seed gourd	carcarB168

The following block(s) are covering this gene:


Gene	Organism	Block
Carg09326	Wax gourd	carwgoB0182
Carg09326	Silver-seed gourd	carcarB165
Carg09326	Cucumber (Gy14) v2	carcgybB0153
Carg09326	Cucumber (Gy14) v1	carcgyB0174
Carg09326	Cucurbita maxima (Rimu)	carcmaB0186
Carg09326	Cucurbita pepo (Zucchini)	carcpeB0203
Carg09326	Wild cucumber (PI 183967)	carcpiB0160
Carg09326	Cucumber (Chinese Long) v2	carcuB0155
Carg09326	Cucumber (Chinese Long) v3	carcucB0163
Carg09326	Bottle gourd (USVL1VR-Ls)	carlsiB126
Carg09326	Melon (DHL92) v3.5.1	carmeB0145
Carg09326	Melon (DHL92) v3.6.1	carmedB0149
Carg09326	Watermelon (Charleston Gray)	carwcgB0135
Carg09326	Watermelon (97103) v1	carwmB0136
Carg09326	Watermelon (97103) v2	carwmbB0148