Cp4.1LG11g00960 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG11g00960
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionMyb transcription factor
LocationCp4.1LG11 : 556985 .. 558755 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTAGTATAGTATAGTAATAAAAGGACAAGAGAAAACATCCTTGTTTTTCTTATTCTGTCATCCTTCATTTAATTTTGTATTGCATAATGCCACACCCTTCTTCTTTTTTATATTTACTCAGATTGGGCTTTTCAGCGACCATGTTTCCCACTTTTCTCAGATAACCTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTATAGTTCTTTGTTGTTGTTGTGGAGAAACAAAGAAGGAAACATGGGGAGAGCTCCTTGCTGCGACAAGGCCAACGTTAAGAAAGGGCCATGGTCCCCTGAGGAAGATGCCAAGCTCAAGTCTTACATTGAGAAACATGGAACTGGTGGTAACTGGATTGCTTTGCCCCAAAAGATTGGTAAAAATTTCATCTTTTTGTTTGATTTGTGGTTTGTGAAGGTAGTAATTGGGGTTAAGAATTGACTGTTTTTGTGAATGGAAAAAGTAGGGCTTAAGAGATGTGGCAAAAGCTGCCGGTTGAGATGGCTCAACTATCTGCGTCCAAACATCAAGCATGGAGGCTTCTCTGAAGAGGAAGATAGAATCATTTGTAGCCTTTATGTTAGTATTGGAAGCAGGTAATTTTTCTTTCTTTATTTATTTCATTCAATTTTGATCAAACCCCAAATCATTTCAGCTTAATTAGGGTTTCTTACACCTAAATGATTGATCTCTATCTTTTTTGGTTAATATCACAACAACAACTAATTTCATTTCTCTCCTTTCTCTTCGATCAATTTCGATAATTTGTTGTCGTATTGATTTTCAATTTTTTTTTTTTTAATTTAAGTTTTTGGGTCGAGTGGTGATTTAGTAGATGAACGACGCACGAACCATTTCACGAGGGTTTTCTCTTCTTACATTACAAATACAAATATAATATGGGGTTTTGGATCTGTTTCGAGTTTTTGTATGTTTCCTACATAATAATATGTATCTTTGTCCCCAAAAAAAAATGAGGTTATGCATATAAAGAGCGTTTTTGGAACGGAATAGGTGGTCTATAATTGCAGCGCAGTTACCGGGAAGAACAGACAATGATATAAAGAACTATTGGAACACGAGGTTGAAGAAGAAGCTATTTGGGAAGCAGCGGAAAGAGCATCATCATCAACAACAACAGGCAACTCGTAGAGGAAACGCTCTAAAGCAAATGCAACAAATGAAGAGACCATTAGAGAATAATAATAACGCAACAAATTATGGGGCTGAGAGCAACAATATTGCCATGTTTTCATTAAACAACATTCCTTATTGGCCTCAGCAGCAGCAGCAGCAGCTCCCTTTGGGACCTCACTACAACCAGGGCAGCTTGCCAGCATCTGATCCAATCAACCCGATTGAAAATCTGAGCAAATTTGGAGGTGAATCCATGGGTGAAGAAAGTGGGTATAGTAATATGAACAACAATGCAAATGGGTATGGCCATTTTTTGCCAATTATGCAAGGGCAAAGCAGTAACCAAATGGTGGAGGTGGAGGTGGAGAATTACAACATGACAGGGTACGAGGATCCGAGGAGGGTTTTATGTGGTCTTGAGTTTCTGTTTGAAGATCATCATCATCATCAGATTTTGGGTACCAATGGTCATGGCTGTGAAATGGGGTCTCTCCAGAGTTCTTCATGCCCGAATTACGAACCAATAATGCTGCAAGATTTACCAACTACTGCTGAACAATATAATGCTAAGTTTGATGACTTGAGGATACTA

mRNA sequence

ATTAGTATAGTATAGTAATAAAAGGACAAGAGAAAACATCCTTGTTTTTCTTATTCTGTCATCCTTCATTTAATTTTGTATTGCATAATGCCACACCCTTCTTCTTTTTTATATTTACTCAGATTGGGCTTTTCAGCGACCATGTTTCCCACTTTTCTCAGATAACCTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTATAGTTCTTTGTTGTTGTTGTGGAGAAACAAAGAAGGAAACATGGGGAGAGCTCCTTGCTGCGACAAGGCCAACGTTAAGAAAGGGCCATGGTCCCCTGAGGAAGATGCCAAGCTCAAGTCTTACATTGAGAAACATGGAACTGGTGGTAACTGGATTGCTTTGCCCCAAAAGATTGGGCTTAAGAGATGTGGCAAAAGCTGCCGGTTGAGATGGCTCAACTATCTGCGTCCAAACATCAAGCATGGAGGCTTCTCTGAAGAGGAAGATAGAATCATTTGTAGCCTTTATGTTAGTATTGGAAGCAGACCATTAGAGAATAATAATAACGCAACAAATTATGGGGCTGAGAGCAACAATATTGCCATGTTTTCATTAAACAACATTCCTTATTGGCCTCAGCAGCAGCAGCAGCAGCTCCCTTTGGGACCTCACTACAACCAGGGCAGCTTGCCAGCATCTGATCCAATCAACCCGATTGAAAATCTGAGCAAATTTGGAGGTGAATCCATGGGTGAAGAAAGTGGGTATAGTAATATGAACAACAATGCAAATGGGTATGGCCATTTTTTGCCAATTATGCAAGGGCAAAGCAGTAACCAAATGGTGGAGGTGGAGGTGGAGAATTACAACATGACAGGGTACGAGGATCCGAGGAGGGTTTTATGTGGTCTTGAGTTTCTGTTTGAAGATCATCATCATCATCAGATTTTGGGTACCAATGGTCATGGCTGTGAAATGGGGTCTCTCCAGAGTTCTTCATGCCCGAATTACGAACCAATAATGCTGCAAGATTTACCAACTACTGCTGAACAATATAATGCTAAGTTTGATGACTTGAGGATACTA

Coding sequence (CDS)

ATGGGGAGAGCTCCTTGCTGCGACAAGGCCAACGTTAAGAAAGGGCCATGGTCCCCTGAGGAAGATGCCAAGCTCAAGTCTTACATTGAGAAACATGGAACTGGTGGTAACTGGATTGCTTTGCCCCAAAAGATTGGGCTTAAGAGATGTGGCAAAAGCTGCCGGTTGAGATGGCTCAACTATCTGCGTCCAAACATCAAGCATGGAGGCTTCTCTGAAGAGGAAGATAGAATCATTTGTAGCCTTTATGTTAGTATTGGAAGCAGACCATTAGAGAATAATAATAACGCAACAAATTATGGGGCTGAGAGCAACAATATTGCCATGTTTTCATTAAACAACATTCCTTATTGGCCTCAGCAGCAGCAGCAGCAGCTCCCTTTGGGACCTCACTACAACCAGGGCAGCTTGCCAGCATCTGATCCAATCAACCCGATTGAAAATCTGAGCAAATTTGGAGGTGAATCCATGGGTGAAGAAAGTGGGTATAGTAATATGAACAACAATGCAAATGGGTATGGCCATTTTTTGCCAATTATGCAAGGGCAAAGCAGTAACCAAATGGTGGAGGTGGAGGTGGAGAATTACAACATGACAGGGTACGAGGATCCGAGGAGGGTTTTATGTGGTCTTGAGTTTCTGTTTGAAGATCATCATCATCATCAGATTTTGGGTACCAATGGTCATGGCTGTGAAATGGGGTCTCTCCAGAGTTCTTCATGCCCGAATTACGAACCAATAATGCTGCAAGATTTACCAACTACTGCTGAACAATATAATGCTAAGTTTGATGACTTGAGGATACTA

Protein sequence

MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDRIICSLYVSIGSRPLENNNNATNYGAESNNIAMFSLNNIPYWPQQQQQQLPLGPHYNQGSLPASDPINPIENLSKFGGESMGEESGYSNMNNNANGYGHFLPIMQGQSSNQMVEVEVENYNMTGYEDPRRVLCGLEFLFEDHHHHQILGTNGHGCEMGSLQSSSCPNYEPIMLQDLPTTAEQYNAKFDDLRIL
Homology
[Close]
BLAST of Cp4.1LG11g00960 vs. Swiss-Prot
Match: MYB36_ARATH (Transcription factor MYB36 OS=Arabidopsis thaliana GN=MYB36 PE=1 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.4e-46
Identity = 87/108 (80.56%), Postives = 92/108 (85.19%), Query Frame = 1 

Query: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKKGPWSPEED KLK YI+K+GTGGNWIALPQKIGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDVKLKDYIDKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDRIICSLYVSIGSR--------PLENNNNATNY 101
           YLRPNIKHGGFSEEEDRII SLY+SIGSR        P   +N+  NY
Sbjct: 61  YLRPNIKHGGFSEEEDRIILSLYISIGSRWSIIAAQLPGRTDNDIKNY 108

[Close]
BLAST of Cp4.1LG11g00960 vs. Swiss-Prot
Match: RAX3_ARATH (Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.8e-46
Identity = 87/108 (80.56%), Postives = 92/108 (85.19%), Query Frame = 1 

Query: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKKGPWSPEEDAKLKSYIE  GTGGNWIALPQKIGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDRIICSLYVSIGSR--------PLENNNNATNY 101
           YLRPNIKHGGFSEEE+ IICSLY++IGSR        P   +N+  NY
Sbjct: 61  YLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNY 108

[Close]
BLAST of Cp4.1LG11g00960 vs. Swiss-Prot
Match: RAX2_ARATH (Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.1e-42
Identity = 76/89 (85.39%), Postives = 81/89 (91.01%), Query Frame = 1 

Query: 1  MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
          MGRAPCCDKANVK+GPWSPEEDAKLK YIEK GTGGNWIALP K GL+RCGKSCRLRWLN
Sbjct: 1  MGRAPCCDKANVKRGPWSPEEDAKLKDYIEKQGTGGNWIALPHKAGLRRCGKSCRLRWLN 60

Query: 61 YLRPNIKHGGFSEEEDRIICSLYVSIGSR 90
          YLRPNI+HG F+EEED II SL+ SIGSR
Sbjct: 61 YLRPNIRHGDFTEEEDNIIYSLFASIGSR 89

[Close]
BLAST of Cp4.1LG11g00960 vs. Swiss-Prot
Match: RAX1_ARATH (Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.8e-39
Identity = 88/182 (48.35%), Postives = 110/182 (60.44%), Query Frame = 1 

Query: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDK  VK+GPWSPEED+KL+ YIEK+G GGNWI+ P K GL+RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKTKVKRGPWSPEEDSKLRDYIEKYGNGGNWISFPLKAGLRRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDRIICSLYVSIGSR--------PLENNNNATNYGAESNNIAMFSL 120
           YLRPNIKHG FSEEEDRII SL+ +IGSR        P   +N+  N             
Sbjct: 61  YLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKN------------- 120

Query: 121 NNIPYWPQQQQQQLPLGPHYNQGSLPASDPINPI-ENLSKFGGESMGEESGYSNMNNNAN 174
               YW  + +++L      +  S  AS  +NPI +++ +    +    S Y+    N N
Sbjct: 121 ----YWNTKLRKKLLSSSSDSSSSAMASPYLNPISQDVKRPTSPTTIPSSSYNPYAENPN 165

[Close]
BLAST of Cp4.1LG11g00960 vs. Swiss-Prot
Match: MYB80_ARATH (Transcription factor MYB80 OS=Arabidopsis thaliana GN=MYB80 PE=1 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.0e-28
Identity = 59/108 (54.63%), Postives = 74/108 (68.52%), Query Frame = 1 

Query: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGR PCC+K NVK+G W+PEED KL SYI +HGT  NW  +P+  GL+RCGKSCRLRW N
Sbjct: 1   MGRIPCCEKENVKRGQWTPEEDNKLASYIAQHGTR-NWRLIPKNAGLQRCGKSCRLRWTN 60

Query: 61  YLRPNIKHGGFSEEEDRIICSLYVSIGSR--------PLENNNNATNY 101
           YLRP++KHG FSE E+ II   +  +G+R        P   +N+  NY
Sbjct: 61  YLRPDLKHGQFSEAEEHIIVKFHSVLGNRWSLIAAQLPGRTDNDVKNY 107

[Close]
BLAST of Cp4.1LG11g00960 vs. TrEMBL
Match: A0A0A0LKH5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G352940 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 6.7e-48
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1 

Query: 1  MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
          MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLN
Sbjct: 1  MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61 YLRPNIKHGGFSEEEDRIICSLYVSIGSR 90
          YLRPNIKHGGFSEEEDRIICSLYVSIGSR
Sbjct: 61 YLRPNIKHGGFSEEEDRIICSLYVSIGSR 89

[Close]
BLAST of Cp4.1LG11g00960 vs. TrEMBL
Match: A0A151TTL8_CAJCA (Transcription factor RAX3 OS=Cajanus cajan GN=KK1_009582 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 4.3e-47
Identity = 91/108 (84.26%), Postives = 94/108 (87.04%), Query Frame = 1 

Query: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDRIICSLYVSIGSR--------PLENNNNATNY 101
           YLRPNIKHGGFSEEED IICSLY+SIGSR        P   +N+  NY
Sbjct: 61  YLRPNIKHGGFSEEEDNIICSLYISIGSRWSVIAAQLPGRTDNDIKNY 108

[Close]
BLAST of Cp4.1LG11g00960 vs. TrEMBL
Match: W9S2H9_9ROSA (Transcription factor RAX3 OS=Morus notabilis GN=L484_007097 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 5.7e-47
Identity = 110/206 (53.40%), Postives = 128/206 (62.14%), Query Frame = 1 

Query: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKKGPWSPEEDAKLKSYIE+HGTGGNWIALPQKIGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIEEHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDRIICSLYVSIGSR--------PLENNNNATNYGAESNNIAMFSL 120
           YLRPNIKHGGFSEEED IICSLY+SIGSR        P   +N+  NY        +   
Sbjct: 61  YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLG- 120

Query: 121 NNIPYWPQQQQQQLPLGPHYNQGSLPASDPINPIENLSKFGG--ESMGEESGYSNMNNNA 180
                  +Q++ QL       +  L A +    I N+       +   E +G + MN N 
Sbjct: 121 -------KQRKDQLAA-----RKGLKAQETKRGINNIGMINSMVDVNSENTGPNIMNINQ 180

Query: 181 NGYGHFLPIMQGQSSNQMVEVEVENY 197
           N Y   LPI+  Q  +   E   +N+
Sbjct: 181 NPYWPELPILAPQPYSSEFEQRRDNH 193

[Close]
BLAST of Cp4.1LG11g00960 vs. TrEMBL
Match: K7K0T6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_U038900 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 5.7e-47
Identity = 91/108 (84.26%), Postives = 94/108 (87.04%), Query Frame = 1 

Query: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDRIICSLYVSIGSR--------PLENNNNATNY 101
           YLRPN+KHGGFSEEED IICSLYVSIGSR        P   +N+  NY
Sbjct: 61  YLRPNLKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNY 108

[Close]
BLAST of Cp4.1LG11g00960 vs. TrEMBL
Match: A0A151T0M8_CAJCA (Transcription factor RAX3 OS=Cajanus cajan GN=KK1_023012 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 5.7e-47
Identity = 91/108 (84.26%), Postives = 94/108 (87.04%), Query Frame = 1 

Query: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDRIICSLYVSIGSR--------PLENNNNATNY 101
           YLRPN+KHGGFSEEED IICSLYVSIGSR        P   +N+  NY
Sbjct: 61  YLRPNLKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNY 108

[Close]
BLAST of Cp4.1LG11g00960 vs. TAIR10
Match: AT5G57620.1 (AT5G57620.1 myb domain protein 36)

HSP 1 Score: 188.0 bits (476), Expect = 7.8e-48
Identity = 87/108 (80.56%), Postives = 92/108 (85.19%), Query Frame = 1 

Query: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKKGPWSPEED KLK YI+K+GTGGNWIALPQKIGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDVKLKDYIDKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDRIICSLYVSIGSR--------PLENNNNATNY 101
           YLRPNIKHGGFSEEEDRII SLY+SIGSR        P   +N+  NY
Sbjct: 61  YLRPNIKHGGFSEEEDRIILSLYISIGSRWSIIAAQLPGRTDNDIKNY 108

[Close]
BLAST of Cp4.1LG11g00960 vs. TAIR10
Match: AT3G49690.1 (AT3G49690.1 myb domain protein 84)

HSP 1 Score: 187.6 bits (475), Expect = 1.0e-47
Identity = 87/108 (80.56%), Postives = 92/108 (85.19%), Query Frame = 1 

Query: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKKGPWSPEEDAKLKSYIE  GTGGNWIALPQKIGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDRIICSLYVSIGSR--------PLENNNNATNY 101
           YLRPNIKHGGFSEEE+ IICSLY++IGSR        P   +N+  NY
Sbjct: 61  YLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNY 108

[Close]
BLAST of Cp4.1LG11g00960 vs. TAIR10
Match: AT5G65790.1 (AT5G65790.1 myb domain protein 68)

HSP 1 Score: 186.4 bits (472), Expect = 2.3e-47
Identity = 86/108 (79.63%), Postives = 91/108 (84.26%), Query Frame = 1 

Query: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKKGPWSPEEDAKLK YIE  GTGGNWIALPQKIGL+RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKDYIENSGTGGNWIALPQKIGLRRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDRIICSLYVSIGSR--------PLENNNNATNY 101
           YLRPNIKHGGFSEEED IIC+LYV+IGSR        P   +N+  NY
Sbjct: 61  YLRPNIKHGGFSEEEDNIICNLYVTIGSRWSIIAAQLPGRTDNDIKNY 108

[Close]
BLAST of Cp4.1LG11g00960 vs. TAIR10
Match: AT4G37780.1 (AT4G37780.1 myb domain protein 87)

HSP 1 Score: 175.3 bits (443), Expect = 5.2e-44
Identity = 79/108 (73.15%), Postives = 89/108 (82.41%), Query Frame = 1 

Query: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDK  VKKGPWS EEDA LKSYIEKHGTG NWI+LPQ+IG+KRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKMAVKKGPWSTEEDAVLKSYIEKHGTGNNWISLPQRIGIKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDRIICSLYVSIGSR--------PLENNNNATNY 101
           YLRPN+KHGGF++EED IICSLY++IGSR        P   +N+  NY
Sbjct: 61  YLRPNLKHGGFTDEEDYIICSLYITIGSRWSIIASQLPGRTDNDIKNY 108

[Close]
BLAST of Cp4.1LG11g00960 vs. TAIR10
Match: AT2G36890.1 (AT2G36890.1 Duplicated homeodomain-like superfamily protein)

HSP 1 Score: 174.1 bits (440), Expect = 1.2e-43
Identity = 76/89 (85.39%), Postives = 81/89 (91.01%), Query Frame = 1 

Query: 1  MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
          MGRAPCCDKANVK+GPWSPEEDAKLK YIEK GTGGNWIALP K GL+RCGKSCRLRWLN
Sbjct: 1  MGRAPCCDKANVKRGPWSPEEDAKLKDYIEKQGTGGNWIALPHKAGLRRCGKSCRLRWLN 60

Query: 61 YLRPNIKHGGFSEEEDRIICSLYVSIGSR 90
          YLRPNI+HG F+EEED II SL+ SIGSR
Sbjct: 61 YLRPNIRHGDFTEEEDNIIYSLFASIGSR 89

[Close]
BLAST of Cp4.1LG11g00960 vs. NCBI nr
Match: gi|700207296|gb|KGN62415.1| (hypothetical protein Csa_2G352940 [Cucumis sativus])

HSP 1 Score: 199.1 bits (505), Expect = 9.6e-48
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1 

Query: 1  MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
          MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLN
Sbjct: 1  MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61 YLRPNIKHGGFSEEEDRIICSLYVSIGSR 90
          YLRPNIKHGGFSEEEDRIICSLYVSIGSR
Sbjct: 61 YLRPNIKHGGFSEEEDRIICSLYVSIGSR 89

[Close]
BLAST of Cp4.1LG11g00960 vs. NCBI nr
Match: gi|449450570|ref|XP_004143035.1| (PREDICTED: transcription factor RAX3-like [Cucumis sativus])

HSP 1 Score: 198.7 bits (504), Expect = 1.3e-47
Identity = 93/108 (86.11%), Postives = 95/108 (87.96%), Query Frame = 1 

Query: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDRIICSLYVSIGSR--------PLENNNNATNY 101
           YLRPNIKHGGFSEEEDRIICSLYVSIGSR        P   +N+  NY
Sbjct: 61  YLRPNIKHGGFSEEEDRIICSLYVSIGSRWSIIAAQLPGRTDNDIKNY 108

[Close]
BLAST of Cp4.1LG11g00960 vs. NCBI nr
Match: gi|659087547|ref|XP_008444511.1| (PREDICTED: transcription factor RAX3-like [Cucumis melo])

HSP 1 Score: 198.7 bits (504), Expect = 1.3e-47
Identity = 93/108 (86.11%), Postives = 95/108 (87.96%), Query Frame = 1 

Query: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDRIICSLYVSIGSR--------PLENNNNATNY 101
           YLRPNIKHGGFSEEEDRIICSLYVSIGSR        P   +N+  NY
Sbjct: 61  YLRPNIKHGGFSEEEDRIICSLYVSIGSRWSIIAAQLPGRTDNDIKNY 108

[Close]
BLAST of Cp4.1LG11g00960 vs. NCBI nr
Match: gi|1012359182|gb|KYP70366.1| (Transcription factor RAX3 [Cajanus cajan])

HSP 1 Score: 196.4 bits (498), Expect = 6.2e-47
Identity = 91/108 (84.26%), Postives = 94/108 (87.04%), Query Frame = 1 

Query: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDRIICSLYVSIGSR--------PLENNNNATNY 101
           YLRPNIKHGGFSEEED IICSLY+SIGSR        P   +N+  NY
Sbjct: 61  YLRPNIKHGGFSEEEDNIICSLYISIGSRWSVIAAQLPGRTDNDIKNY 108

[Close]
BLAST of Cp4.1LG11g00960 vs. NCBI nr
Match: gi|703148780|ref|XP_010109432.1| (Transcription factor RAX3 [Morus notabilis])

HSP 1 Score: 196.1 bits (497), Expect = 8.1e-47
Identity = 110/206 (53.40%), Postives = 128/206 (62.14%), Query Frame = 1 

Query: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKKGPWSPEEDAKLKSYIE+HGTGGNWIALPQKIGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIEEHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDRIICSLYVSIGSR--------PLENNNNATNYGAESNNIAMFSL 120
           YLRPNIKHGGFSEEED IICSLY+SIGSR        P   +N+  NY        +   
Sbjct: 61  YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLG- 120

Query: 121 NNIPYWPQQQQQQLPLGPHYNQGSLPASDPINPIENLSKFGG--ESMGEESGYSNMNNNA 180
                  +Q++ QL       +  L A +    I N+       +   E +G + MN N 
Sbjct: 121 -------KQRKDQLAA-----RKGLKAQETKRGINNIGMINSMVDVNSENTGPNIMNINQ 180

Query: 181 NGYGHFLPIMQGQSSNQMVEVEVENY 197
           N Y   LPI+  Q  +   E   +N+
Sbjct: 181 NPYWPELPILAPQPYSSEFEQRRDNH 193

The following BLAST results are available for this feature:
BLAST of Cp4.1LG11g00960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MYB36_ARATH1.4e-4680.56Transcription factor MYB36 OS=Arabidopsis thaliana GN=MYB36 PE=1 SV=1[more]
RAX3_ARATH1.8e-4680.56Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1[more]
RAX2_ARATH2.1e-4285.39Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1[more]
RAX1_ARATH2.8e-3948.35Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1[more]
MYB80_ARATH1.0e-2854.63Transcription factor MYB80 OS=Arabidopsis thaliana GN=MYB80 PE=1 SV=1[more]
BLAST of Cp4.1LG11g00960 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKH5_CUCSA6.7e-48100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G352940 PE=4 SV=1[more]
A0A151TTL8_CAJCA4.3e-4784.26Transcription factor RAX3 OS=Cajanus cajan GN=KK1_009582 PE=4 SV=1[more]
W9S2H9_9ROSA5.7e-4753.40Transcription factor RAX3 OS=Morus notabilis GN=L484_007097 PE=4 SV=1[more]
K7K0T6_SOYBN5.7e-4784.26Uncharacterized protein OS=Glycine max GN=GLYMA_U038900 PE=4 SV=1[more]
A0A151T0M8_CAJCA5.7e-4784.26Transcription factor RAX3 OS=Cajanus cajan GN=KK1_023012 PE=4 SV=1[more]
BLAST of Cp4.1LG11g00960 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G57620.17.8e-4880.56 myb domain protein 36[more]
AT3G49690.11.0e-4780.56 myb domain protein 84[more]
AT5G65790.12.3e-4779.63 myb domain protein 68[more]
AT4G37780.15.2e-4473.15 myb domain protein 87[more]
AT2G36890.11.2e-4385.39 Duplicated homeodomain-like superfamily protein[more]
BLAST of Cp4.1LG11g00960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207296|gb|KGN62415.1|9.6e-48100.00hypothetical protein Csa_2G352940 [Cucumis sativus][more]
gi|449450570|ref|XP_004143035.1|1.3e-4786.11PREDICTED: transcription factor RAX3-like [Cucumis sativus][more]
gi|659087547|ref|XP_008444511.1|1.3e-4786.11PREDICTED: transcription factor RAX3-like [Cucumis melo][more]
gi|1012359182|gb|KYP70366.1|6.2e-4784.26Transcription factor RAX3 [Cajanus cajan][more]
gi|703148780|ref|XP_010109432.1|8.1e-4753.40Transcription factor RAX3 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017930Myb_dom
IPR009057Homeobox-like_sf
IPR001005SANT/Myb
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g00960.1Cp4.1LG11g00960.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 14..62
score: 2.7
IPR001005SANT/Myb domainSMARTSM00717santcoord: 13..64
score: 3.8
IPR009057Homeodomain-likeGENE3DG3DSA:1.10.10.60coord: 66..87
score: 2.7E-5coord: 5..65
score: 1.6
IPR009057Homeodomain-likeunknownSSF46689Homeodomain-likecoord: 15..89
score: 2.79
IPR017930Myb domainPROFILEPS51294HTH_MYBcoord: 9..66
score: 21
NoneNo IPR availablePANTHERPTHR10641MYB-LIKE DNA-BINDING PROTEIN MYBcoord: 1..89
score: 1.7
NoneNo IPR availablePANTHERPTHR10641:SF654TRANSCRIPTION FACTOR RAX1-RELATEDcoord: 1..89
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG11g00960Cucsa.353120Cucumber (Gy14) v1cgycpeB0919
Cp4.1LG11g00960CmaCh05G001160Cucurbita maxima (Rimu)cmacpeB766
Cp4.1LG11g00960CmaCh09G003200Cucurbita maxima (Rimu)cmacpeB030
Cp4.1LG11g00960CmaCh12G006200Cucurbita maxima (Rimu)cmacpeB179
Cp4.1LG11g00960CmoCh01G018180Cucurbita moschata (Rifu)cmocpeB420
Cp4.1LG11g00960CmoCh09G003180Cucurbita moschata (Rifu)cmocpeB006
Cp4.1LG11g00960CmoCh12G005570Cucurbita moschata (Rifu)cmocpeB154
Cp4.1LG11g00960CmoCh05G001200Cucurbita moschata (Rifu)cmocpeB720
Cp4.1LG11g00960Cla020901Watermelon (97103) v1cpewmB110
Cp4.1LG11g00960Cla022655Watermelon (97103) v1cpewmB101
Cp4.1LG11g00960Csa4G645320Cucumber (Chinese Long) v2cpecuB116
Cp4.1LG11g00960MELO3C010777Melon (DHL92) v3.5.1cpemeB091
Cp4.1LG11g00960ClCG05G017640Watermelon (Charleston Gray)cpewcgB115
Cp4.1LG11g00960ClCG08G016790Watermelon (Charleston Gray)cpewcgB125
Cp4.1LG11g00960CSPI04G25090Wild cucumber (PI 183967)cpecpiB112
Cp4.1LG11g00960Lsi04G014470Bottle gourd (USVL1VR-Ls)cpelsiB085
Cp4.1LG11g00960Lsi08G015570Bottle gourd (USVL1VR-Ls)cpelsiB100
Cp4.1LG11g00960MELO3C010777.2Melon (DHL92) v3.6.1cpemedB115
Cp4.1LG11g00960MELO3C016847.2Melon (DHL92) v3.6.1cpemedB132
Cp4.1LG11g00960CsaV3_4G035370Cucumber (Chinese Long) v3cpecucB0127
Cp4.1LG11g00960CsaV3_2G025830Cucumber (Chinese Long) v3cpecucB0106
Cp4.1LG11g00960Bhi09G002612Wax gourdcpewgoB0157
Cp4.1LG11g00960Bhi04G000429Wax gourdcpewgoB0141
Cp4.1LG11g00960CsGy4G023390Cucumber (Gy14) v2cgybcpeB478
Cp4.1LG11g00960Carg16374Silver-seed gourdcarcpeB0636
Cp4.1LG11g00960Carg11905Silver-seed gourdcarcpeB0263
Cp4.1LG11g00960Carg10667Silver-seed gourdcarcpeB1078
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG11g00960Cp4.1LG07g04790Cucurbita pepo (Zucchini)cpecpeB146
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG11g00960Cucurbita pepo (Zucchini)cpecpeB111
Cp4.1LG11g00960Cucurbita pepo (Zucchini)cpecpeB125
Cp4.1LG11g00960Cucurbita pepo (Zucchini)cpecpeB136
Cp4.1LG11g00960Cucumber (Gy14) v1cgycpeB1039
Cp4.1LG11g00960Cucurbita maxima (Rimu)cmacpeB460
Cp4.1LG11g00960Wild cucumber (PI 183967)cpecpiB092
Cp4.1LG11g00960Cucumber (Chinese Long) v2cpecuB096
Cp4.1LG11g00960Melon (DHL92) v3.5.1cpemeB107
Cp4.1LG11g00960Cucumber (Gy14) v2cgybcpeB161
Cp4.1LG11g00960Melon (DHL92) v3.6.1cpemedB103
Cp4.1LG11g00960Silver-seed gourdcarcpeB0446
Cp4.1LG11g00960Cucumber (Chinese Long) v3cpecucB0141