ClCG08G016790 (gene) Watermelon (Charleston Gray)

Overview
NameClCG08G016790
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr08 : 29117010 .. 29117585 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAACAAATGAAGAGATCATCAGAGAATAACAACACAACAACAACAATAACTCATATGGGTGAGAATAATAGTGCCATATTTTCATTAAACCAATCTCATAACAACAATATTCTTCCTTACTGGCCTCAGCAACAGCACCTCCCTTTAGCATCTCACTACAACAACTTGCCTCCCAGCTTTGGAAAGCCAATTGAAAATGATTTGAGCAAATTTGGAGTTCAATTCATGGATCAAGAAAGTGTGTATAGTAATAATCATGGAAATGAGTATGGTAATTTTTTGCCGGTAATTCAAGGGCAAAGTAGCAACAGCAACAGCCAAATGGTGGAGGTTGAGAATTATAACATGGCTACTTATGAAGATCCAAGGAGGGTTTTGTGTGGACTTGAATTTCTATATGGAGATCATCAGATAATGAGTGGCAATAATGATCAAATGGGGTCTCTCCAAATTTCTTCTTGCCTTCCAAATTATGAAGAAATATTGCTTCAAGATTTGTCAACCACTACTACAACTCAAGAATATGAAGCTAAGTTTGATGATTTGAGGATATTGGATAACAATGCATTATGA

mRNA sequence

ATGCAACAAATGAAGAGATCATCAGAGAATAACAACACAACAACAACAATAACTCATATGGGTGAGAATAATAGTGCCATATTTTCATTAAACCAATCTCATAACAACAATATTCTTCCTTACTGGCCTCAGCAACAGCACCTCCCTTTAGCATCTCACTACAACAACTTGCCTCCCAGCTTTGGAAAGCCAATTGAAAATGATTTGAGCAAATTTGGAGTTCAATTCATGGATCAAGAAAGTGTGTATAGTAATAATCATGGAAATGAGTATGGTAATTTTTTGCCGGTAATTCAAGGGCAAAGTAGCAACAGCAACAGCCAAATGGTGGAGGTTGAGAATTATAACATGGCTACTTATGAAGATCCAAGGAGGGTTTTGTGTGGACTTGAATTTCTATATGGAGATCATCAGATAATGAGTGGCAATAATGATCAAATGGGGTCTCTCCAAATTTCTTCTTGCCTTCCAAATTATGAAGAAATATTGCTTCAAGATTTGTCAACCACTACTACAACTCAAGAATATGAAGCTAAGTTTGATGATTTGAGGATATTGGATAACAATGCATTATGA

Coding sequence (CDS)

ATGCAACAAATGAAGAGATCATCAGAGAATAACAACACAACAACAACAATAACTCATATGGGTGAGAATAATAGTGCCATATTTTCATTAAACCAATCTCATAACAACAATATTCTTCCTTACTGGCCTCAGCAACAGCACCTCCCTTTAGCATCTCACTACAACAACTTGCCTCCCAGCTTTGGAAAGCCAATTGAAAATGATTTGAGCAAATTTGGAGTTCAATTCATGGATCAAGAAAGTGTGTATAGTAATAATCATGGAAATGAGTATGGTAATTTTTTGCCGGTAATTCAAGGGCAAAGTAGCAACAGCAACAGCCAAATGGTGGAGGTTGAGAATTATAACATGGCTACTTATGAAGATCCAAGGAGGGTTTTGTGTGGACTTGAATTTCTATATGGAGATCATCAGATAATGAGTGGCAATAATGATCAAATGGGGTCTCTCCAAATTTCTTCTTGCCTTCCAAATTATGAAGAAATATTGCTTCAAGATTTGTCAACCACTACTACAACTCAAGAATATGAAGCTAAGTTTGATGATTTGAGGATATTGGATAACAATGCATTATGA

Protein sequence

MQQMKRSSENNNTTTTITHMGENNSAIFSLNQSHNNNILPYWPQQQHLPLASHYNNLPPSFGKPIENDLSKFGVQFMDQESVYSNNHGNEYGNFLPVIQGQSSNSNSQMVEVENYNMATYEDPRRVLCGLEFLYGDHQIMSGNNDQMGSLQISSCLPNYEEILLQDLSTTTTTQEYEAKFDDLRILDNNAL
Homology
[Close]
BLAST of ClCG08G016790 vs. TrEMBL
Match: A0A0A0LR06_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G352950 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 3.9e-82
Identity = 165/202 (81.68%), Postives = 177/202 (87.62%), Query Frame = 1 

Query: 1   MQQMKRSSENNNTT-TTITHMGENNSAIFSLNQSHNNNILPYWPQQQHLPLASHYNNLPP 60
           MQQMKRSSENNN T TTI HMGENNS+IFSLNQSHNNNILPYWPQQQHLPLA H+N+   
Sbjct: 1   MQQMKRSSENNNATITTIAHMGENNSSIFSLNQSHNNNILPYWPQQQHLPLAPHFNSNLT 60

Query: 61  SFGKP-IENDLSKFGVQFMDQES-VYSNN-----HGNEYGNFLPVIQGQSSNSNSQMVEV 120
            FGKP IENDLSKFGVQFMDQES +YS+N     +GNEYGN+LP++QGQSS+SNSQMVE+
Sbjct: 61  PFGKPIIENDLSKFGVQFMDQESNLYSSNNNNNGNGNEYGNYLPIMQGQSSSSNSQMVEI 120

Query: 121 ENY-NMATYEDPRRVLCGLEFLYGDHQIMSGNNDQMGSLQISSCLPNYEEILLQDLS--T 180
           ENY NMA YEDPRRVLCGLEFLYGDH IMSGNN+    LQISSCLPNYEEILLQDLS  T
Sbjct: 121 ENYNNMANYEDPRRVLCGLEFLYGDHHIMSGNNN---DLQISSCLPNYEEILLQDLSTTT 180

Query: 181 TTTTQEYEAKFDDLRILDNNAL 192
           TTTTQEY AKFDDLRILDNNAL
Sbjct: 181 TTTTQEYGAKFDDLRILDNNAL 199

[Close]
BLAST of ClCG08G016790 vs. NCBI nr
Match: gi|659087547|ref|XP_008444511.1| (PREDICTED: transcription factor RAX3-like [Cucumis melo])

HSP 1 Score: 316.2 bits (809), Expect = 3.8e-83
Identity = 164/202 (81.19%), Postives = 177/202 (87.62%), Query Frame = 1 

Query: 1   MQQMKRSSENNNTT--TTITHMGENNSAIFSLNQSHNNNILPYWPQQQHLPLASHYNNLP 60
           MQQ+KRSSENNNTT  TTI HMGENNS+IFSLN SHNNNILPYWPQQQHLPLA H+NN  
Sbjct: 140 MQQIKRSSENNNTTITTTIAHMGENNSSIFSLNHSHNNNILPYWPQQQHLPLAPHFNNNL 199

Query: 61  PSFGKPIENDLSKFGVQFMDQES-VYSNN-----HGNEYGNFLPVIQGQSSNSNSQMVEV 120
             FGKPIENDLSKFGVQFMDQES +YS+N     +GNEYGN++P++QGQSS+SNSQMVE+
Sbjct: 200 TPFGKPIENDLSKFGVQFMDQESNLYSSNNNNNENGNEYGNYIPIMQGQSSSSNSQMVEI 259

Query: 121 ENY-NMATYEDPRRVLCGLEFLYGDHQIMSGNNDQMGSLQISSCLPNYEEILLQDLS--T 180
           ENY NMA YEDPRRVLCGLEFLYGDH IMSGNN+    LQISSCLPNYEEILLQDLS  T
Sbjct: 260 ENYNNMANYEDPRRVLCGLEFLYGDHHIMSGNNN---DLQISSCLPNYEEILLQDLSTTT 319

Query: 181 TTTTQEYEAKFDDLRILDNNAL 192
           TTTTQEY AKFDDLRILDNNAL
Sbjct: 320 TTTTQEYGAKFDDLRILDNNAL 338

[Close]
BLAST of ClCG08G016790 vs. NCBI nr
Match: gi|449450570|ref|XP_004143035.1| (PREDICTED: transcription factor RAX3-like [Cucumis sativus])

HSP 1 Score: 312.4 bits (799), Expect = 5.5e-82
Identity = 165/202 (81.68%), Postives = 177/202 (87.62%), Query Frame = 1 

Query: 1   MQQMKRSSENNNTT-TTITHMGENNSAIFSLNQSHNNNILPYWPQQQHLPLASHYNNLPP 60
           MQQMKRSSENNN T TTI HMGENNS+IFSLNQSHNNNILPYWPQQQHLPLA H+N+   
Sbjct: 140 MQQMKRSSENNNATITTIAHMGENNSSIFSLNQSHNNNILPYWPQQQHLPLAPHFNSNLT 199

Query: 61  SFGKP-IENDLSKFGVQFMDQES-VYSNN-----HGNEYGNFLPVIQGQSSNSNSQMVEV 120
            FGKP IENDLSKFGVQFMDQES +YS+N     +GNEYGN+LP++QGQSS+SNSQMVE+
Sbjct: 200 PFGKPIIENDLSKFGVQFMDQESNLYSSNNNNNGNGNEYGNYLPIMQGQSSSSNSQMVEI 259

Query: 121 ENY-NMATYEDPRRVLCGLEFLYGDHQIMSGNNDQMGSLQISSCLPNYEEILLQDLS--T 180
           ENY NMA YEDPRRVLCGLEFLYGDH IMSGNN+    LQISSCLPNYEEILLQDLS  T
Sbjct: 260 ENYNNMANYEDPRRVLCGLEFLYGDHHIMSGNNN---DLQISSCLPNYEEILLQDLSTTT 319

Query: 181 TTTTQEYEAKFDDLRILDNNAL 192
           TTTTQEY AKFDDLRILDNNAL
Sbjct: 320 TTTTQEYGAKFDDLRILDNNAL 338

[Close]
BLAST of ClCG08G016790 vs. NCBI nr
Match: gi|700207297|gb|KGN62416.1| (hypothetical protein Csa_2G352950 [Cucumis sativus])

HSP 1 Score: 312.4 bits (799), Expect = 5.5e-82
Identity = 165/202 (81.68%), Postives = 177/202 (87.62%), Query Frame = 1 

Query: 1   MQQMKRSSENNNTT-TTITHMGENNSAIFSLNQSHNNNILPYWPQQQHLPLASHYNNLPP 60
           MQQMKRSSENNN T TTI HMGENNS+IFSLNQSHNNNILPYWPQQQHLPLA H+N+   
Sbjct: 1   MQQMKRSSENNNATITTIAHMGENNSSIFSLNQSHNNNILPYWPQQQHLPLAPHFNSNLT 60

Query: 61  SFGKP-IENDLSKFGVQFMDQES-VYSNN-----HGNEYGNFLPVIQGQSSNSNSQMVEV 120
            FGKP IENDLSKFGVQFMDQES +YS+N     +GNEYGN+LP++QGQSS+SNSQMVE+
Sbjct: 61  PFGKPIIENDLSKFGVQFMDQESNLYSSNNNNNGNGNEYGNYLPIMQGQSSSSNSQMVEI 120

Query: 121 ENY-NMATYEDPRRVLCGLEFLYGDHQIMSGNNDQMGSLQISSCLPNYEEILLQDLS--T 180
           ENY NMA YEDPRRVLCGLEFLYGDH IMSGNN+    LQISSCLPNYEEILLQDLS  T
Sbjct: 121 ENYNNMANYEDPRRVLCGLEFLYGDHHIMSGNNN---DLQISSCLPNYEEILLQDLSTTT 180

Query: 181 TTTTQEYEAKFDDLRILDNNAL 192
           TTTTQEY AKFDDLRILDNNAL
Sbjct: 181 TTTTQEYGAKFDDLRILDNNAL 199

The following BLAST results are available for this feature:
BLAST of ClCG08G016790 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LR06_CUCSA3.9e-8281.68Uncharacterized protein OS=Cucumis sativus GN=Csa_2G352950 PE=4 SV=1[more]
BLAST of ClCG08G016790 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659087547|ref|XP_008444511.1|3.8e-8381.19PREDICTED: transcription factor RAX3-like [Cucumis melo][more]
gi|449450570|ref|XP_004143035.1|5.5e-8281.68PREDICTED: transcription factor RAX3-like [Cucumis sativus][more]
gi|700207297|gb|KGN62416.1|5.5e-8281.68hypothetical protein Csa_2G352950 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0000785 chromatin
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
molecular_function GO:0003682 chromatin binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G016790.1ClCG08G016790.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG08G016790Csa2G352950Cucumber (Chinese Long) v2cuwcgB169
ClCG08G016790MELO3C010777Melon (DHL92) v3.5.1mewcgB295
ClCG08G016790Cla022655Watermelon (97103) v1wcgwmB400
ClCG08G016790Cla97C08G160470Watermelon (97103) v2wcgwmbB336
ClCG08G016790Bhi04G000429Wax gourdwcgwgoB612
ClCG08G016790CSPI02G18250Wild cucumber (PI 183967)cpiwcgB172
ClCG08G016790Cucsa.395340Cucumber (Gy14) v1cgywcgB674
ClCG08G016790CmaCh12G006200Cucurbita maxima (Rimu)cmawcgB169
ClCG08G016790CmaCh05G001160Cucurbita maxima (Rimu)cmawcgB712
ClCG08G016790CmoCh05G001200Cucurbita moschata (Rifu)cmowcgB716
ClCG08G016790CmoCh12G005570Cucurbita moschata (Rifu)cmowcgB161
ClCG08G016790Lsi08G015570Bottle gourd (USVL1VR-Ls)lsiwcgB438
ClCG08G016790Cp4.1LG11g00960Cucurbita pepo (Zucchini)cpewcgB125
ClCG08G016790Cp4.1LG07g04790Cucurbita pepo (Zucchini)cpewcgB748
ClCG08G016790MELO3C010777.2Melon (DHL92) v3.6.1medwcgB288
ClCG08G016790Carg16374Silver-seed gourdcarwcgB0446
ClCG08G016790Carg11905Silver-seed gourdcarwcgB0178
ClCG08G016790CsaV3_2G025830Cucumber (Chinese Long) v3cucwcgB176
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG08G016790Cucurbita maxima (Rimu)cmawcgB029
ClCG08G016790Cucurbita maxima (Rimu)cmawcgB434
ClCG08G016790Cucurbita maxima (Rimu)cmawcgB603
ClCG08G016790Cucurbita maxima (Rimu)cmawcgB776
ClCG08G016790Cucurbita moschata (Rifu)cmowcgB023
ClCG08G016790Cucurbita moschata (Rifu)cmowcgB435
ClCG08G016790Cucurbita moschata (Rifu)cmowcgB602
ClCG08G016790Cucurbita moschata (Rifu)cmowcgB777
ClCG08G016790Wild cucumber (PI 183967)cpiwcgB350
ClCG08G016790Wild cucumber (PI 183967)cpiwcgB529
ClCG08G016790Wild cucumber (PI 183967)cpiwcgB599
ClCG08G016790Cucumber (Chinese Long) v2cuwcgB332
ClCG08G016790Cucumber (Chinese Long) v2cuwcgB503
ClCG08G016790Melon (DHL92) v3.5.1mewcgB502
ClCG08G016790Melon (DHL92) v3.5.1mewcgB544
ClCG08G016790Watermelon (97103) v1wcgwmB414
ClCG08G016790Watermelon (97103) v1wcgwmB418
ClCG08G016790Cucurbita pepo (Zucchini)cpewcgB086
ClCG08G016790Cucurbita pepo (Zucchini)cpewcgB446
ClCG08G016790Cucurbita pepo (Zucchini)cpewcgB528
ClCG08G016790Cucurbita pepo (Zucchini)cpewcgB708
ClCG08G016790Bottle gourd (USVL1VR-Ls)lsiwcgB153
ClCG08G016790Bottle gourd (USVL1VR-Ls)lsiwcgB305
ClCG08G016790Cucumber (Gy14) v2cgybwcgB155
ClCG08G016790Cucumber (Gy14) v2cgybwcgB309
ClCG08G016790Cucumber (Gy14) v2cgybwcgB461
ClCG08G016790Melon (DHL92) v3.6.1medwcgB496
ClCG08G016790Melon (DHL92) v3.6.1medwcgB542
ClCG08G016790Silver-seed gourdcarwcgB0003
ClCG08G016790Silver-seed gourdcarwcgB0315
ClCG08G016790Silver-seed gourdcarwcgB0403
ClCG08G016790Silver-seed gourdcarwcgB0752
ClCG08G016790Cucumber (Chinese Long) v3cucwcgB350
ClCG08G016790Cucumber (Chinese Long) v3cucwcgB521
ClCG08G016790Cucumber (Chinese Long) v3cucwcgB601
ClCG08G016790Watermelon (97103) v2wcgwmbB314
ClCG08G016790Watermelon (97103) v2wcgwmbB329
ClCG08G016790Wax gourdwcgwgoB640
ClCG08G016790Wax gourdwcgwgoB656
ClCG08G016790Watermelon (Charleston Gray)wcgwcgB112
ClCG08G016790Watermelon (Charleston Gray)wcgwcgB168
ClCG08G016790Cucumber (Gy14) v1cgywcgB138
ClCG08G016790Cucumber (Gy14) v1cgywcgB399
ClCG08G016790Cucumber (Gy14) v1cgywcgB603