Cp4.1LG10g04340 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG10g04340
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description60S ribosomal protein L24
LocationCp4.1LG10 : 1544459 .. 1546186 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTTTTCGGCGACCACGAAGAAACAGAGGAGTAGCCACTGCAGCCGCCGCCATGGTGTTGAAGTCAGTCTCTATTACTCTCTTTCTGATTTTTTTTTTTTTTGTTGAATTGATTTCATTTTGTTTTCCGGATCCTTTTATTGTTATTATTATTATTTTTTTCTGATAATCGGTGATTGCGTCGTTGTGGTGAAATAGAGCAAGAACAATGTCACCTATGTGTGCTGTTTAATTAAACTTTCAGTGCCTGGAGATGTATATCCTTGAAATCTCTAGGTTTTCTGGCGAATTGAAATGTTTGTCAGTAGATTTCATTATGATCGTTGGGTTTGAAGATGTAGTGGCTCATCCAATGAGAATGTTTGTGGTGCTAGATATGCGTAATTCGTTATTGATTGATTCTGAAATATAATGCTGGTTTTGGTAGGACCGAGCTTTGTCGTTTCAGTGGCGCTAAGATATATCCCGGTAGAGGAATCAGATTTATCCGTGCTGATTCACAGGTAATAAACCTGCGTGGCCGCTGATTGAGTTGTAGTTGTATCTGGATAATCTGATATATATTTTGTACTTTGATGTATACGTACCTGCTATTTTAATTTCTAACTTGGCTGGATTCACCAGGTTTTCCTGTTTGCAAACTCCAAATGCAAGAGGTACTTCCATAACAAATTGAAGCCTTCTAAGCTCACCTGGACAGCCATGTACAGGAAGCAACATAAGAAGGTAAGAAGTCAAATTTATTTTCTGGATTTATTTTCTTGTTGGGTATATTTATAGTCTATCATATTGTTCTTTGTCTGTTAGCTTTGATTTTGGACGGGTGATTTTGAAACAGATTGTTTTGACTGTGGTTCTTGTAGATCATAATTATCTACTGTATTATGCCCTGTTAACCACGATTTTTACTAAATAATTGGTGAATTATTGAATCCTTCTTTTCTTTTCATTCCGTAGGATATTGCTCAAGAGGCTGTGAAGAAGAGGAGACGTACCACTAAGAAGCCCTACTCGAGGTCCATAGTGGGTGCTACATTGGAGGTTATCCAGAAGAAGAGAGCTGAGAAGCCCGAGGTTCGTGACGCTGCTAGAGAAGCAGCCCTCCGGTATGTGATTGTTCCAAGTTTATATTTTTCAAATTTTCTTGATAATATTGCATGTCATCAAATCTCAAGAAAAGCCAAATGTAGACATTTATATGTTTATAACGAGTACTGAATGATTTATTGATCAGCCACATATTTTGTTTAAATTATTTTAATGTATTGAATTTGTTAATCTTTGGGGTGTAGTGAAATTAAGGAGAGAATTAAGAAAACGAAGGATGAAAAGAAGGCAAAGAAGGCAGAAGTGACGGCAAAAACACAGAAGACACAGAACAAGGCTAACGTTGGTAGGGGAGCTGCACCGAAAGGACCAAAGCTTGGTGGTGGCGGTGGCAAACGTTGAACTCTCCACGCTGCAAGCTAGGAAGAGTAGTTGTGAGCTTTTATGTTCTTTGATTATTTCCAAAATTTTGTATGGATAAATTATTTTGGCACATTTCTTCTTCCAGTTATGTCCCAAATATCAGAGTTCTTCATTTTTTCCCTTCAATTTACATAATTATGAGTTATAACTCGATTGCTGAAAAGGGGATTAGAAACTCTTGGTTTTTGTGAAGTTCTTGGTTTTTATGAATTTCCTTTCAAATTTTATTTGCTTACCTTTTGGATTCATATAATATATA

mRNA sequence

GGTTTTCGGCGACCACGAAGAAACAGAGGAGTAGCCACTGCAGCCGCCGCCATGGTGTTGAATGCCTGGAGATGTATATCCTTGAAATCTCTAGGTTTTCTGGCGAATTGAAATGTTTGTCAGTAGATTTCATTATGATCGTTGGGTTTGAAGATGTAGTGGCTCATCCAATGAGAATGACCGAGCTTTGTCGTTTCAGTGGCGCTAAGATATATCCCGGTAGAGGAATCAGATTTATCCGTGCTGATTCACAGGTTTTCCTGTTTGCAAACTCCAAATGCAAGAGGTACTTCCATAACAAATTGAAGCCTTCTAAGCTCACCTGGACAGCCATGTACAGGAAGCAACATAAGAAGGATATTGCTCAAGAGGCTGTGAAGAAGAGGAGACGTACCACTAAGAAGCCCTACTCGAGGTCCATAGTGGGTGCTACATTGGAGGTTATCCAGAAGAAGAGAGCTGAGAAGCCCGAGGTTCGTGACGCTGCTAGAGAAGCAGCCCTCCGTGAAATTAAGGAGAGAATTAAGAAAACGAAGGATGAAAAGAAGGCAAAGAAGGCAGAAGTGACGGCAAAAACACAGAAGACACAGAACAAGGCTAACGTTGGTAGGGGAGCTGCACCGAAAGGACCAAAGCTTGGTGGTGGCGGTGGCAAACGTTGAACTCTCCACGCTGCAAGCTAGGAAGAGTAGTTGTGAGCTTTTATGTTCTTTGATTATTTCCAAAATTTTGTATGGATAAATTATTTTGGCACATTTCTTCTTCCAGTTATGTCCCAAATATCAGAGTTCTTCATTTTTTCCCTTCAATTTACATAATTATGAGTTATAACTCGATTGCTGAAAAGGGGATTAGAAACTCTTGGTTTTTGTGAAGTTCTTGGTTTTTATGAATTTCCTTTCAAATTTTATTTGCTTACCTTTTGGATTCATATAATATATA

Coding sequence (CDS)

ATGTATATCCTTGAAATCTCTAGGTTTTCTGGCGAATTGAAATGTTTGTCAGTAGATTTCATTATGATCGTTGGGTTTGAAGATGTAGTGGCTCATCCAATGAGAATGACCGAGCTTTGTCGTTTCAGTGGCGCTAAGATATATCCCGGTAGAGGAATCAGATTTATCCGTGCTGATTCACAGGTTTTCCTGTTTGCAAACTCCAAATGCAAGAGGTACTTCCATAACAAATTGAAGCCTTCTAAGCTCACCTGGACAGCCATGTACAGGAAGCAACATAAGAAGGATATTGCTCAAGAGGCTGTGAAGAAGAGGAGACGTACCACTAAGAAGCCCTACTCGAGGTCCATAGTGGGTGCTACATTGGAGGTTATCCAGAAGAAGAGAGCTGAGAAGCCCGAGGTTCGTGACGCTGCTAGAGAAGCAGCCCTCCGTGAAATTAAGGAGAGAATTAAGAAAACGAAGGATGAAAAGAAGGCAAAGAAGGCAGAAGTGACGGCAAAAACACAGAAGACACAGAACAAGGCTAACGTTGGTAGGGGAGCTGCACCGAAAGGACCAAAGCTTGGTGGTGGCGGTGGCAAACGTTGA

Protein sequence

MYILEISRFSGELKCLSVDFIMIVGFEDVVAHPMRMTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVTAKTQKTQNKANVGRGAAPKGPKLGGGGGKR
Homology
[Close]
BLAST of Cp4.1LG10g04340 vs. Swiss-Prot
Match: RL24_CICAR (60S ribosomal protein L24 OS=Cicer arietinum GN=RPL24 PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.0e-70
Identity = 142/159 (89.31%), Postives = 148/159 (93.08%), Query Frame = 1 

Query: 37  TELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKD 96
           TELCRFSGAKIYPGRGIRFIR DSQVFLF NSKCKRYFHN+LKPSKLTWTAM+RKQHKKD
Sbjct: 5   TELCRFSGAKIYPGRGIRFIRGDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQHKKD 64

Query: 97  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 156
            AQEAVKKRRR TKKPYSRSIVGATLEVIQKKR EKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  AAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIKKTKD 124

Query: 157 EKKAKKAEVTAKTQKTQNKANVGRGAAPKGPKLGGGGGK 196
           EKKAKKAEV +K QK+Q K NV +GA PKGPK+GGGGGK
Sbjct: 125 EKKAKKAEVASKAQKSQGKGNVQKGALPKGPKMGGGGGK 163

[Close]
BLAST of Cp4.1LG10g04340 vs. Swiss-Prot
Match: RL24_PRUAV (60S ribosomal protein L24 OS=Prunus avium GN=RPL24 PE=2 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 4.7e-68
Identity = 140/156 (89.74%), Postives = 149/156 (95.51%), Query Frame = 1 

Query: 37  TELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKD 96
           TELCRFSGAKIYPG+GIRFIR+DSQVFLFANSKCKRYFHN+LKPSKLTWTAMYRKQHKKD
Sbjct: 5   TELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 64

Query: 97  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 156
           IAQEAVKKRRRTTKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKD 124

Query: 157 EKKAKKAEVTAKTQKTQNKANVGRGAA-PKGPKLGG 192
           EKKAKKAEVT K+QK+Q K ++ +G A PKGPKLGG
Sbjct: 125 EKKAKKAEVT-KSQKSQGKGSIAKGGAQPKGPKLGG 159

[Close]
BLAST of Cp4.1LG10g04340 vs. Swiss-Prot
Match: RL241_ARATH (60S ribosomal protein L24-1 OS=Arabidopsis thaliana GN=RPL24A PE=1 SV=2)

HSP 1 Score: 256.1 bits (653), Expect = 3.0e-67
Identity = 137/160 (85.62%), Postives = 145/160 (90.62%), Query Frame = 1 

Query: 37  TELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKD 96
           TELCRFSG KIYPGRGIRFIR+DSQVFLF NSKCKRYFHNKLKPSKL WTAMYRKQHKKD
Sbjct: 5   TELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHKKD 64

Query: 97  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 156
            AQEAVK+RRR TKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  AAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 124

Query: 157 EKKAKKAEVTAKTQKTQNKANVGRGAAPKGPKLGGGGGKR 197
           EKKAKK E  +K QK+Q K N+ + AAPK  K+GGGGG+R
Sbjct: 125 EKKAKKVEYASKQQKSQVKGNIPKSAAPKAAKMGGGGGRR 164

[Close]
BLAST of Cp4.1LG10g04340 vs. Swiss-Prot
Match: RL242_ARATH (60S ribosomal protein L24-2 OS=Arabidopsis thaliana GN=RPL24B PE=1 SV=2)

HSP 1 Score: 248.8 bits (634), Expect = 4.8e-65
Identity = 139/161 (86.34%), Postives = 144/161 (89.44%), Query Frame = 1 

Query: 37  TELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKD 96
           TELCRFSG KIYPGRGIRFIR+DSQVFLF NSKCKRYFHNKLKPSKL WTAMYRKQHKKD
Sbjct: 5   TELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHKKD 64

Query: 97  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 156
            AQEAVK+RRR TKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  AAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 124

Query: 157 EKKAKKAEVTAKTQKTQNKANVGR-GAAPKGPKLGGGGGKR 197
           EKKAKK E  +K QK   KAN  +  AA KGPK+GGGGGKR
Sbjct: 125 EKKAKKVEFASKQQKV--KANFPKAAAASKGPKVGGGGGKR 163

[Close]
BLAST of Cp4.1LG10g04340 vs. Swiss-Prot
Match: RL24_HORVU (60S ribosomal protein L24 OS=Hordeum vulgare GN=RPL24 PE=2 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.1e-64
Identity = 140/161 (86.96%), Postives = 148/161 (91.93%), Query Frame = 1 

Query: 37  TELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKD 96
           TELCRFSG KIYPG+GIRFIR+DSQVFLFANSKCKRYFHN+LKP+KL WTAMYRKQHKKD
Sbjct: 5   TELCRFSGQKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPAKLCWTAMYRKQHKKD 64

Query: 97  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 156
           I  EA KKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  IHAEAAKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 124

Query: 157 EKKAKKAEVTAKTQKTQ-NKANVGRGAAPKGPKLGGGGGKR 197
           EKKAKKAEVT K+QK+Q  K  V +G+  KGPKLGGGGGKR
Sbjct: 125 EKKAKKAEVT-KSQKSQGGKGAVQKGS--KGPKLGGGGGKR 162

[Close]
BLAST of Cp4.1LG10g04340 vs. TrEMBL
Match: A0A0A0KHD4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G449310 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.4e-74
Identity = 153/160 (95.62%), Postives = 156/160 (97.50%), Query Frame = 1 

Query: 37  TELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKD 96
           TELCRFSGAKIYPGRGIRF+RADSQVFLFANSKCKRYFHN+LKPSKLTWTAMYRKQHKKD
Sbjct: 5   TELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 64

Query: 97  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 156
           IAQEAVKKRRR TKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  IAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIKKTKD 124

Query: 157 EKKAKKAEVTAKTQKTQNKANVGRGAAPKGPKLGGGGGKR 197
           EKKAKKAEV AKTQKTQ K NVGRGAAPKGPKLGGGGGKR
Sbjct: 125 EKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 164

[Close]
BLAST of Cp4.1LG10g04340 vs. TrEMBL
Match: A0A067JRN7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20649 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.7e-72
Identity = 148/160 (92.50%), Postives = 156/160 (97.50%), Query Frame = 1 

Query: 37  TELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKD 96
           TELCRFSGAKIYPG+GIRFIR+DSQVFLFANSKCKRYFHN+LKPSKLTWTAMYRKQHKKD
Sbjct: 5   TELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 64

Query: 97  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 156
           I+ EAVKK+RRTTKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  ISAEAVKKKRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKD 124

Query: 157 EKKAKKAEVTAKTQKTQNKANVGRGAAPKGPKLGGGGGKR 197
           EKKAKKAEV AKTQKTQ K+NVG+GAAPKGPKLGGGGGKR
Sbjct: 125 EKKAKKAEVMAKTQKTQGKSNVGKGAAPKGPKLGGGGGKR 164

[Close]
BLAST of Cp4.1LG10g04340 vs. TrEMBL
Match: A0A061FQJ2_THECC (60S ribosomal protein L24-1 isoform 1 OS=Theobroma cacao GN=TCM_043464 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 1.1e-71
Identity = 147/160 (91.88%), Postives = 154/160 (96.25%), Query Frame = 1 

Query: 37  TELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKD 96
           TELCRFSGAKIYPG+GIRF+R+DSQVFLFANSKCKRYFHN+LKPSKLTWTAMYRKQHKKD
Sbjct: 22  TELCRFSGAKIYPGKGIRFVRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 81

Query: 97  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 156
           IA EAVKKRRRTTKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERIKKTKD
Sbjct: 82  IAAEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKD 141

Query: 157 EKKAKKAEVTAKTQKTQNKANVGRGAAPKGPKLGGGGGKR 197
           EKKAKKAE+ AKTQKTQ K NV +GAAPKGPKLGGGGGKR
Sbjct: 142 EKKAKKAELMAKTQKTQGKGNVPKGAAPKGPKLGGGGGKR 181

[Close]
BLAST of Cp4.1LG10g04340 vs. TrEMBL
Match: A0A061FPV3_THECC (60S ribosomal protein L24-1 isoform 2 OS=Theobroma cacao GN=TCM_043464 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 1.1e-71
Identity = 147/160 (91.88%), Postives = 154/160 (96.25%), Query Frame = 1 

Query: 37  TELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKD 96
           TELCRFSGAKIYPG+GIRF+R+DSQVFLFANSKCKRYFHN+LKPSKLTWTAMYRKQHKKD
Sbjct: 5   TELCRFSGAKIYPGKGIRFVRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 64

Query: 97  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 156
           IA EAVKKRRRTTKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  IAAEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKD 124

Query: 157 EKKAKKAEVTAKTQKTQNKANVGRGAAPKGPKLGGGGGKR 197
           EKKAKKAE+ AKTQKTQ K NV +GAAPKGPKLGGGGGKR
Sbjct: 125 EKKAKKAELMAKTQKTQGKGNVPKGAAPKGPKLGGGGGKR 164

[Close]
BLAST of Cp4.1LG10g04340 vs. TrEMBL
Match: A0A067JER1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26143 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 1.4e-71
Identity = 148/160 (92.50%), Postives = 154/160 (96.25%), Query Frame = 1 

Query: 37  TELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKD 96
           TELCRFSGAKIYPG+GIRFIR+DSQVFLFANSKCKRYFHN+LKPSKLTWTAMYRKQHKKD
Sbjct: 5   TELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 64

Query: 97  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 156
           IA EAVKKRRRTTKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  IAAEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKD 124

Query: 157 EKKAKKAEVTAKTQKTQNKANVGRGAAPKGPKLGGGGGKR 197
           EKKAKKAEV AKTQKTQ+K  V +GAAPKGPKLGGGGGKR
Sbjct: 125 EKKAKKAEVMAKTQKTQSKGGVPKGAAPKGPKLGGGGGKR 164

[Close]
BLAST of Cp4.1LG10g04340 vs. TAIR10
Match: AT2G36620.1 (AT2G36620.1 ribosomal protein L24)

HSP 1 Score: 256.1 bits (653), Expect = 1.7e-68
Identity = 137/160 (85.62%), Postives = 145/160 (90.62%), Query Frame = 1 

Query: 37  TELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKD 96
           TELCRFSG KIYPGRGIRFIR+DSQVFLF NSKCKRYFHNKLKPSKL WTAMYRKQHKKD
Sbjct: 5   TELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHKKD 64

Query: 97  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 156
            AQEAVK+RRR TKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  AAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 124

Query: 157 EKKAKKAEVTAKTQKTQNKANVGRGAAPKGPKLGGGGGKR 197
           EKKAKK E  +K QK+Q K N+ + AAPK  K+GGGGG+R
Sbjct: 125 EKKAKKVEYASKQQKSQVKGNIPKSAAPKAAKMGGGGGRR 164

[Close]
BLAST of Cp4.1LG10g04340 vs. TAIR10
Match: AT3G53020.1 (AT3G53020.1 Ribosomal protein L24e family protein)

HSP 1 Score: 248.8 bits (634), Expect = 2.7e-66
Identity = 139/161 (86.34%), Postives = 144/161 (89.44%), Query Frame = 1 

Query: 37  TELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKD 96
           TELCRFSG KIYPGRGIRFIR+DSQVFLF NSKCKRYFHNKLKPSKL WTAMYRKQHKKD
Sbjct: 5   TELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHKKD 64

Query: 97  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 156
            AQEAVK+RRR TKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  AAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 124

Query: 157 EKKAKKAEVTAKTQKTQNKANVGR-GAAPKGPKLGGGGGKR 197
           EKKAKK E  +K QK   KAN  +  AA KGPK+GGGGGKR
Sbjct: 125 EKKAKKVEFASKQQKV--KANFPKAAAASKGPKVGGGGGKR 163

[Close]
BLAST of Cp4.1LG10g04340 vs. TAIR10
Match: AT2G44860.1 (AT2G44860.1 Ribosomal protein L24e family protein)

HSP 1 Score: 67.8 bits (164), Expect = 8.6e-12
Identity = 47/125 (37.60%), Postives = 69/125 (55.20%), Query Frame = 1 

Query: 38  ELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKDI 97
           E C F  + IYPG GI+F+R D+++F F  SKC + F  K  P K+ WT  +R  H KD+
Sbjct: 4   EKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHGKDM 63

Query: 98  AQEAV----KKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKK 157
            ++      KKR R  +  Y R++   TL  I+K      ++R  AREA  + I+ R+K 
Sbjct: 64  TKDTTFEFEKKRNRPER--YDRNVTENTLMAIKK----IAKIR-TAREA--KHIENRLKP 119

Query: 158 TKDEK 159
            K +K
Sbjct: 124 NKQKK 119

[Close]
BLAST of Cp4.1LG10g04340 vs. NCBI nr
Match: gi|449451090|ref|XP_004143295.1| (PREDICTED: 60S ribosomal protein L24 [Cucumis sativus])

HSP 1 Score: 287.3 bits (734), Expect = 2.0e-74
Identity = 153/160 (95.62%), Postives = 156/160 (97.50%), Query Frame = 1 

Query: 37  TELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKD 96
           TELCRFSGAKIYPGRGIRF+RADSQVFLFANSKCKRYFHN+LKPSKLTWTAMYRKQHKKD
Sbjct: 5   TELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 64

Query: 97  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 156
           IAQEAVKKRRR TKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  IAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIKKTKD 124

Query: 157 EKKAKKAEVTAKTQKTQNKANVGRGAAPKGPKLGGGGGKR 197
           EKKAKKAEV AKTQKTQ K NVGRGAAPKGPKLGGGGGKR
Sbjct: 125 EKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 164

[Close]
BLAST of Cp4.1LG10g04340 vs. NCBI nr
Match: gi|659125126|ref|XP_008462521.1| (PREDICTED: 60S ribosomal protein L24 [Cucumis melo])

HSP 1 Score: 286.2 bits (731), Expect = 4.4e-74
Identity = 152/160 (95.00%), Postives = 156/160 (97.50%), Query Frame = 1 

Query: 37  TELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKD 96
           TELCRFSGAKIYPG+GIRF+RADSQVFLFANSKCKRYFHN+LKPSKLTWTAMYRKQHKKD
Sbjct: 5   TELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 64

Query: 97  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 156
           IAQEAVKKRRR TKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  IAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIKKTKD 124

Query: 157 EKKAKKAEVTAKTQKTQNKANVGRGAAPKGPKLGGGGGKR 197
           EKKAKKAEV AKTQKTQ K NVGRGAAPKGPKLGGGGGKR
Sbjct: 125 EKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 164

[Close]
BLAST of Cp4.1LG10g04340 vs. NCBI nr
Match: gi|802740954|ref|XP_012086983.1| (PREDICTED: 60S ribosomal protein L24-like [Jatropha curcas])

HSP 1 Score: 280.4 bits (716), Expect = 2.4e-72
Identity = 148/160 (92.50%), Postives = 156/160 (97.50%), Query Frame = 1 

Query: 37  TELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKD 96
           TELCRFSGAKIYPG+GIRFIR+DSQVFLFANSKCKRYFHN+LKPSKLTWTAMYRKQHKKD
Sbjct: 5   TELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 64

Query: 97  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 156
           I+ EAVKK+RRTTKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  ISAEAVKKKRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKD 124

Query: 157 EKKAKKAEVTAKTQKTQNKANVGRGAAPKGPKLGGGGGKR 197
           EKKAKKAEV AKTQKTQ K+NVG+GAAPKGPKLGGGGGKR
Sbjct: 125 EKKAKKAEVMAKTQKTQGKSNVGKGAAPKGPKLGGGGGKR 164

[Close]
BLAST of Cp4.1LG10g04340 vs. NCBI nr
Match: gi|1009160805|ref|XP_015898548.1| (PREDICTED: 60S ribosomal protein L24 [Ziziphus jujuba])

HSP 1 Score: 279.3 bits (713), Expect = 5.3e-72
Identity = 148/160 (92.50%), Postives = 153/160 (95.62%), Query Frame = 1 

Query: 37  TELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKD 96
           TELCRFSG KIYPG+GIRFIR+DSQVFLFANSKCKRYFHN+LKPSKLTWTAMYRKQHKKD
Sbjct: 5   TELCRFSGQKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 64

Query: 97  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 156
           IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKR EKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIKKTKD 124

Query: 157 EKKAKKAEVTAKTQKTQNKANVGRGAAPKGPKLGGGGGKR 197
           EKKAKKAEV AKTQK Q K N+ +GAAPKGPKLGGGGGKR
Sbjct: 125 EKKAKKAEVLAKTQKAQGKVNISKGAAPKGPKLGGGGGKR 164

[Close]
BLAST of Cp4.1LG10g04340 vs. NCBI nr
Match: gi|590566091|ref|XP_007010132.1| (60S ribosomal protein L24-1 isoform 1 [Theobroma cacao])

HSP 1 Score: 277.7 bits (709), Expect = 1.5e-71
Identity = 147/160 (91.88%), Postives = 154/160 (96.25%), Query Frame = 1 

Query: 37  TELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKD 96
           TELCRFSGAKIYPG+GIRF+R+DSQVFLFANSKCKRYFHN+LKPSKLTWTAMYRKQHKKD
Sbjct: 22  TELCRFSGAKIYPGKGIRFVRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 81

Query: 97  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 156
           IA EAVKKRRRTTKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERIKKTKD
Sbjct: 82  IAAEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKD 141

Query: 157 EKKAKKAEVTAKTQKTQNKANVGRGAAPKGPKLGGGGGKR 197
           EKKAKKAE+ AKTQKTQ K NV +GAAPKGPKLGGGGGKR
Sbjct: 142 EKKAKKAELMAKTQKTQGKGNVPKGAAPKGPKLGGGGGKR 181

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g04340 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL24_CICAR1.0e-7089.3160S ribosomal protein L24 OS=Cicer arietinum GN=RPL24 PE=2 SV=1[more]
RL24_PRUAV4.7e-6889.7460S ribosomal protein L24 OS=Prunus avium GN=RPL24 PE=2 SV=1[more]
RL241_ARATH3.0e-6785.6360S ribosomal protein L24-1 OS=Arabidopsis thaliana GN=RPL24A PE=1 SV=2[more]
RL242_ARATH4.8e-6586.3460S ribosomal protein L24-2 OS=Arabidopsis thaliana GN=RPL24B PE=1 SV=2[more]
RL24_HORVU1.1e-6486.9660S ribosomal protein L24 OS=Hordeum vulgare GN=RPL24 PE=2 SV=1[more]
BLAST of Cp4.1LG10g04340 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KHD4_CUCSA1.4e-7495.63Uncharacterized protein OS=Cucumis sativus GN=Csa_6G449310 PE=4 SV=1[more]
A0A067JRN7_JATCU1.7e-7292.50Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20649 PE=4 SV=1[more]
A0A061FQJ2_THECC1.1e-7191.8860S ribosomal protein L24-1 isoform 1 OS=Theobroma cacao GN=TCM_043464 PE=4 SV=1[more]
A0A061FPV3_THECC1.1e-7191.8860S ribosomal protein L24-1 isoform 2 OS=Theobroma cacao GN=TCM_043464 PE=4 SV=1[more]
A0A067JER1_JATCU1.4e-7192.50Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26143 PE=4 SV=1[more]
BLAST of Cp4.1LG10g04340 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G36620.11.7e-6885.63 ribosomal protein L24[more]
AT3G53020.12.7e-6686.34 Ribosomal protein L24e family protein[more]
AT2G44860.18.6e-1237.60 Ribosomal protein L24e family protein[more]
BLAST of Cp4.1LG10g04340 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449451090|ref|XP_004143295.1|2.0e-7495.63PREDICTED: 60S ribosomal protein L24 [Cucumis sativus][more]
gi|659125126|ref|XP_008462521.1|4.4e-7495.00PREDICTED: 60S ribosomal protein L24 [Cucumis melo][more]
gi|802740954|ref|XP_012086983.1|2.4e-7292.50PREDICTED: 60S ribosomal protein L24-like [Jatropha curcas][more]
gi|1009160805|ref|XP_015898548.1|5.3e-7292.50PREDICTED: 60S ribosomal protein L24 [Ziziphus jujuba][more]
gi|590566091|ref|XP_007010132.1|1.5e-7191.8860S ribosomal protein L24-1 isoform 1 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR023442Ribosomal_L24e_CS
IPR023441Ribosomal protein L24e domain
IPR011017TRASH_dom
IPR000988Ribosomal_L24e-rel
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0001510 RNA methylation
cellular_component GO:0005840 ribosome
cellular_component GO:0009507 chloroplast
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g04340.1Cp4.1LG10g04340.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000988Ribosomal protein L24e-relatedPANTHERPTHR1079260S RIBOSOMAL PROTEIN L24coord: 36..196
score: 1.1E
IPR000988Ribosomal protein L24e-relatedPFAMPF01246Ribosomal_L24ecoord: 37..99
score: 1.3
IPR011017TRASH domainSMARTSM007464TRASHcoord: 40..78
score: 5.
IPR023441Ribosomal protein L24e domainGENE3DG3DSA:2.30.170.20coord: 37..100
score: 7.5
IPR023442Ribosomal protein L24e, conserved sitePROSITEPS01073RIBOSOMAL_L24Ecoord: 42..59
scor
NoneNo IPR availableunknownCoilCoilcoord: 144..171
scor
NoneNo IPR availablePANTHERPTHR10792:SF11SUBFAMILY NOT NAMEDcoord: 36..196
score: 1.1E
NoneNo IPR availableunknownSSF57716Glucocorticoid receptor-like (DNA-binding domain)coord: 38..90
score: 8.84

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG10g04340Cucsa.125060Cucumber (Gy14) v1cgycpeB0314
Cp4.1LG10g04340CmaCh06G004300Cucurbita maxima (Rimu)cmacpeB807
Cp4.1LG10g04340CmaCh07G008750Cucurbita maxima (Rimu)cmacpeB866
Cp4.1LG10g04340CmaCh14G002560Cucurbita maxima (Rimu)cmacpeB254
Cp4.1LG10g04340CmoCh03G011790Cucurbita moschata (Rifu)cmocpeB606
Cp4.1LG10g04340CmoCh07G009080Cucurbita moschata (Rifu)cmocpeB806
Cp4.1LG10g04340CmoCh14G002460Cucurbita moschata (Rifu)cmocpeB218
Cp4.1LG10g04340CmoCh06G004270Cucurbita moschata (Rifu)cmocpeB761
Cp4.1LG10g04340Cla017744Watermelon (97103) v1cpewmB064
Cp4.1LG10g04340Cla018359Watermelon (97103) v1cpewmB078
Cp4.1LG10g04340Csa3G748210Cucumber (Chinese Long) v2cpecuB067
Cp4.1LG10g04340Csa6G449310Cucumber (Chinese Long) v2cpecuB085
Cp4.1LG10g04340MELO3C009419Melon (DHL92) v3.5.1cpemeB054
Cp4.1LG10g04340MELO3C024506Melon (DHL92) v3.5.1cpemeB069
Cp4.1LG10g04340ClCG10G019550Watermelon (Charleston Gray)cpewcgB057
Cp4.1LG10g04340ClCG04G009670Watermelon (Charleston Gray)cpewcgB071
Cp4.1LG10g04340CSPI06G25110Wild cucumber (PI 183967)cpecpiB081
Cp4.1LG10g04340CSPI03G34010Wild cucumber (PI 183967)cpecpiB062
Cp4.1LG10g04340Lsi01G012630Bottle gourd (USVL1VR-Ls)cpelsiB054
Cp4.1LG10g04340Lsi03G019540Bottle gourd (USVL1VR-Ls)cpelsiB062
Cp4.1LG10g04340MELO3C024506.2Melon (DHL92) v3.6.1cpemedB090
Cp4.1LG10g04340MELO3C019857.2Melon (DHL92) v3.6.1cpemedB069
Cp4.1LG10g04340MELO3C009419.2Melon (DHL92) v3.6.1cpemedB071
Cp4.1LG10g04340CsaV3_6G040310Cucumber (Chinese Long) v3cpecucB0093
Cp4.1LG10g04340CsaV3_3G036650Cucumber (Chinese Long) v3cpecucB0069
Cp4.1LG10g04340Bhi03G001156Wax gourdcpewgoB0100
Cp4.1LG10g04340Bhi11G001696Wax gourdcpewgoB0069
Cp4.1LG10g04340CsGy6G024530Cucumber (Gy14) v2cgybcpeB710
Cp4.1LG10g04340CsGy3G031810Cucumber (Gy14) v2cgybcpeB290
Cp4.1LG10g04340Carg05378Silver-seed gourdcarcpeB1127
Cp4.1LG10g04340Carg10455Silver-seed gourdcarcpeB0337
Cp4.1LG10g04340Carg03721Silver-seed gourdcarcpeB0348
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG10g04340Cp4.1LG19g03780Cucurbita pepo (Zucchini)cpecpeB076
Cp4.1LG10g04340Cp4.1LG03g01320Cucurbita pepo (Zucchini)cpecpeB092
Cp4.1LG10g04340Cp4.1LG08g10620Cucurbita pepo (Zucchini)cpecpeB106
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG10g04340Cucurbita maxima (Rimu)cmacpeB656